@macrostrat/column-views 3.6.1 → 3.9.0

package/dist/prepare-units/composite-scale.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"composite-scale.cjs","sources":["../../src/prepare-units/composite-scale.ts"],"sourcesContent":["import { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { ensureArray, getUnitHeightRange } from \"./utils\";\nimport { ScaleContinuousNumeric, scaleLinear } from \"d3-scale\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport { buildHybridScale } from \"./dynamic-scales\";\nimport { ExtUnit, HybridScaleType, SectionInfo } from \"./types\";\nimport type {\n  ColumnScaleOptions,\n  CompositeColumnData,\n  CompositeScaleData,\n  PackageLayoutData,\n  PackageScaleInfo,\n  PackageScaleLayoutData,\n  SectionScaleOptions,\n} from \"./types\";\n\n// Composite scale information augmented with units in each package\n\nexport function buildCompositeScaleInfo(\n  inputScales: PackageScaleInfo[],\n  unconformityHeight: number,\n): CompositeScaleData {\n  /** Finalize the heights of sections, including the heights of unconformities\n   * between them.\n   */\n\n  let totalHeight = unconformityHeight / 2;\n  let lastSectionTopHeight = 0;\n\n  const packages2: PackageScaleLayoutData[] = [];\n  for (const group of inputScales) {\n    const { domain, scale } = group;\n    const [b_age, t_age] = domain;\n    const key = `package-${b_age}-${t_age}`;\n\n    packages2.push({\n      ...createPackageScale(group, totalHeight),\n      key,\n      offset: totalHeight,\n      // Unconformity height above this particular section\n      paddingTop: totalHeight - lastSectionTopHeight,\n    });\n\n    const pixelHeight = Math.abs(scale(b_age) - scale(t_age));\n    lastSectionTopHeight = totalHeight + pixelHeight;\n    totalHeight = lastSectionTopHeight + unconformityHeight;\n  }\n  totalHeight += unconformityHeight / 2;\n  return {\n    totalHeight,\n    sections: packages2,\n  };\n}\n\nexport function finalizeSectionHeights<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  unconformityHeight: number,\n): CompositeColumnData<T> {\n  /** Finalize the heights of sections, including the heights of unconformities\n   * between them.\n   */\n\n  const sectionScales = sections.map((d) => d.scaleInfo);\n\n  const { totalHeight, sections: packages } = buildCompositeScaleInfo(\n    sectionScales,\n    unconformityHeight,\n  );\n\n  // This could perhaps be simplified.\n  const sections1: PackageLayoutData<T>[] = [];\n  for (const i in sections) {\n    const group = sections[i];\n    const scaleInfo = packages[i];\n    sections1.push({\n      ...group,\n      key: scaleInfo.key,\n      scaleInfo,\n    });\n  }\n  return {\n    totalHeight,\n    sections: sections1,\n  };\n}\n\nexport interface SectionInfoWithScale<\n  T extends UnitLong = ExtUnit,\n> extends SectionInfo<T> {\n  scaleInfo: PackageScaleInfo;\n}\n\nexport function computeSectionHeights<T extends UnitLong>(\n  sections: SectionInfo<T>[],\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T>[] {\n  return sections.map((group) => {\n    return addScaleToSection<T>(group, opts);\n  });\n}\n\nfunction addScaleToSection<T extends UnitLong = ExtUnit>(\n  group: SectionInfo<T>,\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T> {\n  const { t_age, b_age, t_pos, b_pos, units } = group;\n  let _range = null;\n  // if t_age and b_age are set for a group, use them to define the range...\n  if (opts.axisType == ColumnAxisType.AGE) {\n    _range = [b_age, t_age];\n  } else {\n    _range = [b_pos, t_pos];\n  }\n\n  const scaleInfo = buildSectionScale<T>(units, {\n    ...opts,\n    domain: _range,\n  });\n\n  return {\n    ...group,\n    scaleInfo,\n  };\n}\n\nfunction buildSectionScale<T extends UnitLong>(\n  data: T[],\n  opts: SectionScaleOptions,\n): PackageScaleInfo {\n  const {\n    targetUnitHeight = 20,\n    minPixelScale = 0.2,\n    axisType,\n    minSectionHeight,\n    scale,\n    hybridScale,\n  } = opts;\n  const domain = opts.domain ?? findSectionHeightRange(data, axisType);\n\n  const dAge = Math.abs(domain[0] - domain[1]);\n\n  let _pixelScale = opts.pixelScale;\n  let pixelHeight: number;\n\n  if (hybridScale != null) {\n    /** In an equidistant surfaces scale, we want to determine the heights of surfaces\n     * and then distribute units evenly between them.\n     * This is somewhat like an ordinal scale\n     */\n    if (hybridScale.type === HybridScaleType.EquidistantSurfaces) {\n      _pixelScale ??= targetUnitHeight;\n    }\n\n    return buildHybridScale(hybridScale, data, domain, {\n      pixelOffset: 0,\n      pixelScale: _pixelScale,\n    });\n  }\n\n  if (scale == null) {\n    if (_pixelScale == null) {\n      const avgAgeRange = findAverageUnitHeight(data, axisType);\n      // Get pixel height necessary to render average unit at target height\n      _pixelScale = Math.max(targetUnitHeight / avgAgeRange, minPixelScale);\n\n      // OLD METHOD that cares about overall section height vs. individual unit height\n      // 0.2 pixel per myr is the floor scale\n      //const targetHeight = targetUnitHeight * data.length;\n      // 1 pixel per myr is the floor scale\n      //_pixelScale = Math.max(targetHeight / dAge, minPixelScale);\n    }\n\n    let height = dAge * _pixelScale;\n    // If height is less than minSectionHeight, set it to minSectionHeight\n    const _minSectionHeight = minSectionHeight ?? targetUnitHeight ?? 0;\n    pixelHeight = Math.max(height, _minSectionHeight);\n    _pixelScale = pixelHeight / dAge;\n  } else {\n    // If a scale is provided, use it to compute pixel height\n    pixelHeight = Math.abs(scale(domain[0]) - scale(domain[1]));\n  }\n\n  return createPackageScale(\n    { scale, domain, pixelHeight, pixelScale: _pixelScale },\n    0,\n  );\n}\n\nexport function createPackageScale(\n  def: PackageScaleInfo,\n  offset: number = 0,\n): PackageScaleInfo {\n  /** Build a section scale */\n  // Domain should be oriented from bottom to top, but scale is oriented from top to bottom\n  const { domain, pixelScale, pixelHeight, scale, heightScale } = def;\n\n  if (scale == null && pixelScale == null) {\n    throw new Error(\"Either scale or pixelScale must be provided\");\n  }\n\n  let _scale: ScaleContinuousNumeric<number, number>;\n  if (scale == null) {\n    _scale = scaleLinear()\n      .domain([domain[1], domain[0]])\n      .range([offset, pixelHeight + offset]);\n  } else {\n    const domain0 = scale.domain();\n    const range0 = scale.range();\n    _scale = scale\n      .copy()\n      .domain(domain0)\n      .range(range0.map((d) => d + offset));\n  }\n\n  _scale.clamp();\n\n  let _heightScale = null;\n  if (heightScale != null) {\n    // Adjust height scale as well\n    const range0 = scale.range();\n    _heightScale = heightScale.copy().range(range0.map((d) => d + offset));\n    _heightScale.clamp();\n  }\n\n  return {\n    domain,\n    pixelScale,\n    pixelHeight,\n    scale: _scale,\n    // Internal details for hybrid scales. TODO: improve this\n    heightScale: _heightScale,\n  };\n}\n\nfunction findSectionHeightRange(\n  data: UnitLong[],\n  axisType: ColumnAxisType,\n): [number, number] {\n  if (axisType == null) {\n    throw new Error(\"Axis type is not set\");\n  }\n  if (axisType === ColumnAxisType.AGE) {\n    const t_age = Math.min(...data.map((d) => d.t_age));\n    const b_age = Math.max(...data.map((d) => d.b_age));\n    return [b_age, t_age];\n  } else if (\n    axisType == ColumnAxisType.DEPTH ||\n    axisType == ColumnAxisType.ORDINAL\n  ) {\n    const t_pos = Math.min(...data.map((d) => d.t_pos));\n    const b_pos = Math.max(...data.map((d) => d.b_pos));\n    return [b_pos, t_pos];\n  } else if (axisType == ColumnAxisType.HEIGHT) {\n    const t_pos = Math.max(...data.map((d) => d.t_pos));\n    const b_pos = Math.min(...data.map((d) => d.b_pos));\n    return [b_pos, t_pos];\n  }\n}\n\nfunction findAverageUnitHeight(\n  data: UnitLong[],\n  axisType: ColumnAxisType,\n): number {\n  const unitHeights = data.map((d) => {\n    const [b_pos, t_pos] = getUnitHeightRange(d, axisType);\n    return Math.abs(b_pos - t_pos);\n  });\n  return unitHeights.reduce((a, b) => a + b, 0) / unitHeights.length;\n}\n\nexport interface CompositeColumnScale {\n  (age: number): number | null;\n  copy(): CompositeColumnScale;\n  domain(): [number, number];\n  invert(pixelHeight: number): number | null;\n  clamp(clamp: boolean): void;\n}\n\nexport function createCompositeScale(\n  sections: PackageLayoutData[],\n  interpolateUnconformities: boolean = false,\n): CompositeColumnScale {\n  /** Create a scale that works across multiple packages */\n\n  const scales: ScaleContinuousNumeric<number, number>[] = [];\n\n  let lastScale: ScaleContinuousNumeric<number, number> | null = null;\n  for (const section of sections) {\n    const _scale = section.scaleInfo.scale.copy().clamp(true);\n    scales.push(_scale);\n    if (lastScale != null && interpolateUnconformities) {\n      // Add a new scale that interpolates between lastScale and _scale\n      const lastDomain = lastScale.domain();\n      const lastRange = lastScale.range();\n      const currentDomain = _scale.domain();\n      const currentRange = _scale.range();\n\n      const interpScale = scaleLinear()\n        .domain([lastDomain[lastDomain.length - 1], currentDomain[0]])\n        .range([lastRange[lastRange.length - 1], currentRange[0]])\n        .clamp(true);\n      scales.push(interpScale);\n    }\n    lastScale = _scale;\n  }\n\n  const scale: CompositeColumnScale = (age) => {\n    for (const s of scales) {\n      const domain = s.domain();\n      if (\n        domain[0] < domain[domain.length - 1] &&\n        age >= domain[0] &&\n        age <= domain[domain.length - 1]\n      ) {\n        // Age axes\n        return s(age);\n      } else if (age <= domain[0] && age >= domain[domain.length - 1]) {\n        // Normal axes like height\n        return s(age);\n      }\n    }\n    return null;\n  };\n\n  scale.copy = () => {\n    return createCompositeScale(sections, interpolateUnconformities);\n  };\n\n  scale.domain = () => {\n    /** Return the domain of the scale */\n    const vals = sections.flatMap((d) => d.scaleInfo.domain);\n    if (vals[0] < vals[vals.length - 1]) {\n      // age axes\n      return [Math.min(...vals), Math.max(...vals)];\n    }\n    // Normal axes like height\n    return [Math.max(...vals), Math.min(...vals)];\n  };\n\n  scale.invert = (pixelHeight) => {\n    /** Invert the scale to get the age at a given pixel height */\n    // Iterate through the sections to find the correct one\n    for (const scale of scales) {\n      const range = scale.range();\n      if (\n        pixelHeight > Math.min(...range) &&\n        pixelHeight <= Math.max(...range)\n      ) {\n        //console.log(\"Inverting scale at pixel height\", pixelHeight);\n        return scale.invert(pixelHeight);\n      }\n    }\n    return null;\n  };\n\n  scale.clamp = (clamp: boolean) => {\n    /** Clamp all constituent scales */\n    for (const s of scales) {\n      s.clamp(clamp);\n    }\n  };\n\n  return scale;\n}\n\n/** Collapse sections separated by unconformities that are smaller than a given pixel height. */\nexport function collapseUnconformitiesByPixelHeight<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  threshold: number,\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T>[] {\n  const newSections = [];\n  let currentSection: SectionInfoWithScale<T> | null = null;\n  for (const nextSection of sections) {\n    if (currentSection == null) {\n      currentSection = nextSection;\n      continue;\n    }\n    let heights: [number, number];\n    let pxHeights: [number, number];\n    if (opts.axisType !== ColumnAxisType.AGE) {\n      heights = [nextSection.t_pos, currentSection.b_pos];\n    } else {\n      heights = [nextSection.t_age, currentSection.b_age];\n    }\n\n    const _diff = (vals: number[]) => {\n      return Math.abs(vals[0] - vals[1]);\n    };\n\n    pxHeights = [\n      _diff(heights.map(nextSection.scaleInfo.scale)),\n      _diff(heights.map(currentSection.scaleInfo.scale)),\n    ];\n\n    const pxHeight = Math.min(...pxHeights);\n\n    if (pxHeight < threshold) {\n      let t_pos: number;\n      let b_pos: number;\n      if (\n        opts.axisType == ColumnAxisType.AGE ||\n        opts.axisType == ColumnAxisType.DEPTH\n      ) {\n        t_pos = Math.min(currentSection.t_pos, nextSection.t_pos);\n        b_pos = Math.max(currentSection.b_pos, nextSection.b_pos);\n      } else {\n        t_pos = Math.max(currentSection.t_pos, nextSection.t_pos);\n        b_pos = Math.min(currentSection.b_pos, nextSection.b_pos);\n      }\n\n      // We need to merge the sections\n      const compositeSection0: SectionInfo<T> = {\n        units: [...currentSection.units, ...nextSection.units],\n        section_id: [\n          ...ensureArray(currentSection.section_id),\n          ...ensureArray(nextSection.section_id),\n        ],\n        t_age: 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An age-based key (`package-${b_age}-${t_age}`)\n    // changes every frame while the age window animates, forcing every package,\n    // column, and timescale slice in the correlation chart to remount each frame.\n    const key = `package-${i}`;\n\n    packages2.push({\n      ...createPackageScale(group, totalHeight),\n      key,\n      offset: totalHeight,\n      // Unconformity height above this particular section\n      paddingTop: totalHeight - lastSectionTopHeight,\n    });\n\n    const pixelHeight = Math.abs(scale(b_age) - scale(t_age));\n    lastSectionTopHeight = totalHeight + pixelHeight;\n    totalHeight = lastSectionTopHeight + unconformityHeight;\n  }\n  totalHeight += unconformityHeight / 2;\n  return {\n    totalHeight,\n    sections: packages2,\n  };\n}\n\nexport function finalizeSectionHeights<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  unconformityHeight: number,\n): CompositeColumnData<T> {\n  /** Finalize the heights of sections, including the heights of unconformities\n   * between them.\n   */\n\n  const sectionScales = sections.map((d) => d.scaleInfo);\n\n  const { totalHeight, sections: packages } = buildCompositeScaleInfo(\n    sectionScales,\n    unconformityHeight,\n  );\n\n  // This could perhaps be simplified.\n  const sections1: PackageLayoutData<T>[] = [];\n  for (const i in sections) {\n    const group = sections[i];\n    const scaleInfo = packages[i];\n    sections1.push({\n      ...group,\n      key: scaleInfo.key,\n      scaleInfo,\n    });\n  }\n  return {\n    totalHeight,\n    sections: sections1,\n  };\n}\n\nexport interface SectionInfoWithScale<\n  T extends UnitLong = ExtUnit,\n> extends SectionInfo<T> {\n  scaleInfo: PackageScaleInfo;\n}\n\nexport function computeSectionHeights<T extends UnitLong>(\n  sections: SectionInfo<T>[],\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T>[] {\n  return sections.map((group) => {\n    return addScaleToSection<T>(group, opts);\n  });\n}\n\nfunction addScaleToSection<T extends UnitLong = ExtUnit>(\n  group: SectionInfo<T>,\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T> {\n  const { t_age, b_age, t_pos, b_pos, units } = group;\n  let _range = null;\n  // if t_age and b_age are set for a group, use them to define the range...\n  if (opts.axisType == ColumnAxisType.AGE) {\n    _range = [b_age, t_age];\n  } else {\n    _range = [b_pos, t_pos];\n  }\n\n  const scaleInfo = buildSectionScale<T>(units, {\n    ...opts,\n    domain: _range,\n  });\n\n  return {\n    ...group,\n    scaleInfo,\n  };\n}\n\nfunction buildSectionScale<T extends UnitLong>(\n  data: T[],\n  opts: SectionScaleOptions,\n): PackageScaleInfo {\n  const {\n    targetUnitHeight = 20,\n    minPixelScale = 0.2,\n    axisType,\n    minSectionHeight,\n    visibleWindow,\n    scale,\n    hybridScale,\n  } = opts;\n  const domain = opts.domain ?? 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Math.max(section.t_age, bound)\n        : Math.min(section.b_age, bound);\n    const available = direction > 0 ? section.b_age - from : from - section.t_age;\n    if (available <= 0) continue;\n\n    const cost = available * pixelScale;\n    if (budget <= cost) return from + direction * (budget / pixelScale);\n\n    bound = direction > 0 ? section.b_age : section.t_age;\n    budget -= cost;\n  }\n  return bound;\n}\n\n/** The age at which a section starts, measured from the window edge outward. */\nfunction nearEdge<T extends UnitLong>(\n  section: SectionInfoWithScale<T>,\n  direction: 1 | -1,\n): number {\n  return direction > 0 ? section.t_age : section.b_age;\n}\n\n/**\n * Clip laid-out sections to the rendered window — the last step of layout, so\n * that every section has already been sized (and floored) at its full extent.\n * Each section renders at the density `scaleFor` resolved for it, which is what\n * keeps a padding margin the same number of pixels as the band it borders is\n * stretched to meet `minSectionHeight`.\n */\nexport function trimSectionsToWindow<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  window: [number, number],\n  scaleFor: (section: SectionInfoWithScale<T>) => number,\n): SectionInfoWithScale<T>[] {\n  const [b_win, t_win] = window;\n  const out: SectionInfoWithScale<T>[] = [];\n\n  for (const section of sections) {\n    const t_age = Math.max(section.t_age, t_win);\n    const b_age = Math.min(section.b_age, b_win);\n    if (b_age <= t_age) continue;\n\n    const pixelScale = scaleFor(section);\n    if (\n      b_age === section.b_age &&\n      t_age === section.t_age &&\n      pixelScale === section.scaleInfo.pixelScale\n    ) {\n      out.push(section);\n      continue;\n    }\n\n    out.push({\n      ...section,\n      t_age,\n      b_age,\n      units: section.units.filter((u) => agesOverlap(u, { t_age, b_age })),\n      scaleInfo: createPackageScale({\n        domain: [b_age, t_age],\n        pixelScale,\n        pixelHeight: (b_age - t_age) * pixelScale,\n        scale: null,\n      }),\n    });\n  }\n  return out;\n}\n\nexport function createPackageScale(\n  def: PackageScaleInfo,\n  offset: number = 0,\n): PackageScaleInfo {\n  /** Build a section scale */\n  // Domain should be oriented from bottom to top, but scale is oriented from top to bottom\n  const { domain, pixelScale, pixelHeight, scale, heightScale } = def;\n\n  if (scale == null && pixelScale == null) {\n    throw new Error(\"Either scale or pixelScale must be provided\");\n  }\n\n  let _scale: ScaleContinuousNumeric<number, number>;\n  if (scale == null) {\n    _scale = scaleLinear()\n      .domain([domain[1], domain[0]])\n      .range([offset, pixelHeight + offset]);\n  } else {\n    const domain0 = scale.domain();\n    const range0 = scale.range();\n    _scale = scale\n      .copy()\n      .domain(domain0)\n      .range(range0.map((d) => d + offset));\n  }\n\n  _scale.clamp();\n\n  let _heightScale = null;\n  if (heightScale != null) {\n    // Adjust height scale as well\n    const range0 = scale.range();\n    _heightScale = heightScale.copy().range(range0.map((d) => d + offset));\n    _heightScale.clamp();\n  }\n\n  return {\n    domain,\n    pixelScale,\n    pixelHeight,\n    scale: _scale,\n    // Internal details for hybrid scales. TODO: improve this\n    heightScale: _heightScale,\n  };\n}\n\nfunction findSectionHeightRange(\n  data: UnitLong[],\n  axisType: ColumnAxisType,\n): [number, number] {\n  if (axisType == null) {\n    throw new Error(\"Axis type is not set\");\n  }\n  if (axisType === ColumnAxisType.AGE) {\n    const t_age = Math.min(...data.map((d) => d.t_age));\n    const b_age = Math.max(...data.map((d) => d.b_age));\n    return [b_age, t_age];\n  } else if (\n    axisType == ColumnAxisType.DEPTH ||\n    axisType == ColumnAxisType.ORDINAL\n  ) {\n    const t_pos = Math.min(...data.map((d) => d.t_pos));\n    const b_pos = Math.max(...data.map((d) => d.b_pos));\n    return [b_pos, t_pos];\n  } else if (axisType == ColumnAxisType.HEIGHT) {\n    const t_pos = Math.max(...data.map((d) => d.t_pos));\n    const b_pos = Math.min(...data.map((d) => d.b_pos));\n    return [b_pos, t_pos];\n  }\n}\n\nfunction findAverageUnitHeight(\n  data: UnitLong[],\n  axisType: ColumnAxisType,\n  visibleWindow?: [number, number] | null,\n): number {\n  /** The typical duration of a unit, which `targetUnitHeight` sizes.\n   *\n   * Measured over what the render window actually *shows* — units outside it\n   * are ignored and a unit it cuts through counts only for its visible part.\n   * That's what makes `targetUnitHeight` mean the same thing at every zoom\n   * depth: the units on screen are drawn at the target height whether they're\n   * whole or slivers of something much longer.\n   *\n   * A section the window doesn't reach has nothing visible to measure, so it\n   * falls back to its own units at full duration — it's drawn at its own scale.\n   * (Deriving it from the padded window instead would be circular: padding is\n   * measured in pixels, which is what we're trying to establish.)\n   */\n  const durations = (clip: boolean) =>\n    data\n      .map((d) => {\n        const [b_pos, t_pos] = getUnitHeightRange(d, axisType);\n        if (!clip) return Math.abs(b_pos - t_pos);\n        const [b_win, t_win] = visibleWindow;\n        return Math.max(\n          0,\n          Math.min(b_pos, b_win) - Math.max(t_pos, t_win),\n        );\n      })\n      .filter((d) => d > 0);\n\n  const useWindow = visibleWindow != null && axisType === ColumnAxisType.AGE;\n  let heights = useWindow ? durations(true) : [];\n  if (heights.length === 0) heights = durations(false);\n  if (heights.length === 0) return 1;\n\n  return heights.reduce((a, b) => a + b, 0) / heights.length;\n}\n\nexport interface CompositeColumnScale {\n  (age: number): number | null;\n  copy(): CompositeColumnScale;\n  domain(): [number, number];\n  invert(pixelHeight: number): number | null;\n  clamp(clamp: boolean): void;\n}\n\nexport function createCompositeScale(\n  sections: PackageLayoutData[],\n  interpolateUnconformities: boolean = false,\n): CompositeColumnScale {\n  /** Create a scale that works across multiple packages */\n\n  const scales: ScaleContinuousNumeric<number, number>[] = [];\n\n  let lastScale: ScaleContinuousNumeric<number, number> | null = null;\n  for (const section of sections) {\n    const _scale = section.scaleInfo.scale.copy().clamp(true);\n    scales.push(_scale);\n    if (lastScale != null && interpolateUnconformities) {\n      // Add a new scale that interpolates between lastScale and _scale\n      const lastDomain = lastScale.domain();\n      const lastRange = lastScale.range();\n      const currentDomain = _scale.domain();\n      const currentRange = _scale.range();\n\n      const interpScale = scaleLinear()\n        .domain([lastDomain[lastDomain.length - 1], currentDomain[0]])\n        .range([lastRange[lastRange.length - 1], currentRange[0]])\n        .clamp(true);\n      scales.push(interpScale);\n    }\n    lastScale = _scale;\n  }\n\n  const scale: CompositeColumnScale = (age) => {\n    for (const s of scales) {\n      const domain = s.domain();\n      if (\n        domain[0] < domain[domain.length - 1] &&\n        age >= domain[0] &&\n        age <= domain[domain.length - 1]\n      ) {\n        // Age axes\n        return s(age);\n      } else if (age <= domain[0] && age >= domain[domain.length - 1]) {\n        // Normal axes like height\n        return s(age);\n      }\n    }\n    return null;\n  };\n\n  scale.copy = () => {\n    return createCompositeScale(sections, interpolateUnconformities);\n  };\n\n  scale.domain = () => {\n    /** Return the domain of the scale */\n    const vals = sections.flatMap((d) => d.scaleInfo.domain);\n    if (vals[0] < vals[vals.length - 1]) {\n      // age axes\n      return [Math.min(...vals), Math.max(...vals)];\n    }\n    // Normal axes like height\n    return [Math.max(...vals), Math.min(...vals)];\n  };\n\n  scale.invert = (pixelHeight) => {\n    /** Invert the scale to get the age at a given pixel height */\n    // Iterate through the sections to find the correct one\n    for (const scale of scales) {\n      const range = scale.range();\n      if (\n        pixelHeight > Math.min(...range) &&\n        pixelHeight <= Math.max(...range)\n      ) {\n        //console.log(\"Inverting scale at pixel height\", pixelHeight);\n        return scale.invert(pixelHeight);\n      }\n    }\n    return null;\n  };\n\n  scale.clamp = (clamp: boolean) => {\n    /** Clamp all constituent scales */\n    for (const s of scales) {\n      s.clamp(clamp);\n    }\n  };\n\n  return scale;\n}\n\n/** Collapse sections separated by unconformities that are smaller than a given pixel height. */\nexport function collapseUnconformitiesByPixelHeight<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  threshold: number,\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T>[] {\n  const newSections = [];\n  let currentSection: SectionInfoWithScale<T> | null = null;\n  for (const nextSection of sections) {\n    if (currentSection == null) {\n      currentSection = nextSection;\n      continue;\n    }\n    let heights: [number, number];\n    let pxHeights: [number, number];\n    if (opts.axisType !== ColumnAxisType.AGE) {\n      heights = [nextSection.t_pos, currentSection.b_pos];\n    } else {\n      heights = [nextSection.t_age, currentSection.b_age];\n    }\n\n    const _diff = (vals: number[]) => {\n      return Math.abs(vals[0] - vals[1]);\n    };\n\n    pxHeights = [\n      _diff(heights.map(nextSection.scaleInfo.scale)),\n      _diff(heights.map(currentSection.scaleInfo.scale)),\n    ];\n\n    const pxHeight = Math.min(...pxHeights);\n\n    if (pxHeight < threshold) {\n      let t_pos: number;\n      let b_pos: number;\n      if (\n        opts.axisType == ColumnAxisType.AGE ||\n        opts.axisType == ColumnAxisType.DEPTH\n      ) {\n        t_pos = Math.min(currentSection.t_pos, nextSection.t_pos);\n        b_pos = Math.max(currentSection.b_pos, nextSection.b_pos);\n      } else {\n        t_pos = Math.max(currentSection.t_pos, nextSection.t_pos);\n        b_pos = Math.min(currentSection.b_pos, nextSection.b_pos);\n      }\n\n      // We need to merge 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package/dist/prepare-units/composite-scale.d.ts

@@ -6,6 +6,45 @@ export interface SectionInfoWithScale<T extends UnitLong = ExtUnit> extends Sect
     scaleInfo: PackageScaleInfo;
 }
 export declare function computeSectionHeights<T extends UnitLong>(sections: SectionInfo<T>[], opts: ColumnScaleOptions): SectionInfoWithScale<T>[];
+/**
+ * The density each section will actually render at once the window is applied.
+ *
+ * A section the window cuts short is still being *looked at*, so
+ * `minSectionHeight` applies to what remains — it's honored by expanding the
+ * section's scale, not by showing more of it. Resolving this **before** padding
+ * matters: padding is a pixel margin measured at the density it will render at,
+ * and a section stretched to the floor afterwards would multiply the margin
+ * along with everything else (a 20 px margin in a band stretched 4× renders at
+ * 80 px, and asymmetrically so whenever one side is truncated).
+ *
+ * Sections the window leaves whole keep their laid-out density — they already
+ * met the floor when they were sized.
+ */
+export declare function resolveWindowScales<T extends UnitLong>(sections: SectionInfoWithScale<T>[], focalWindow: [number, number], floor: number): Map<SectionInfoWithScale<T>, number>;
+/**
+ * Expand an age window outward by `padding` **pixels** of column, spending the
+ * budget against sections that are already laid out at full extent, at the
+ * densities they will finally render at (`scaleFor`).
+ *
+ * Because the layout is done, this is exact rather than predicted: each section
+ * contributes its own real pixel height. Padding collapses when the column runs
+ * out on that side.
+ *
+ * Unconformities between sections cost nothing. They render at a fixed height
+ * that's typically larger than the padding itself (30–60 px), so charging them
+ * would mean padding could never reach across a gap — which is the case it
+ * exists for: revealing the neighboring section keeps its timescale intervals
+ * navigable. The padding is a budget of neighboring *content*.
+ */
+export declare function padWindowByPixels<T extends UnitLong>(sections: SectionInfoWithScale<T>[], window: [number, number], padding: number, scaleFor: (section: SectionInfoWithScale<T>) => number): [number, number];
+/**
+ * Clip laid-out sections to the rendered window — the last step of layout, so
+ * that every section has already been sized (and floored) at its full extent.
+ * Each section renders at the density `scaleFor` resolved for it, which is what
+ * keeps a padding margin the same number of pixels as the band it borders is
+ * stretched to meet `minSectionHeight`.
+ */
+export declare function trimSectionsToWindow<T extends UnitLong>(sections: SectionInfoWithScale<T>[], window: [number, number], scaleFor: (section: SectionInfoWithScale<T>) => number): SectionInfoWithScale<T>[];
 export declare function createPackageScale(def: PackageScaleInfo, offset?: number): PackageScaleInfo;
 export interface CompositeColumnScale {
     (age: number): number | null;

package/dist/prepare-units/composite-scale.js

@@ -1,5 +1,5 @@
 import { ColumnAxisType } from "@macrostrat/column-components";
-import { ensureArray, getUnitHeightRange } from "./utils.js";
+import { ensureArray, agesOverlap, getUnitHeightRange } from "./utils.js";
 import { scaleLinear } from "d3-scale";
 import { buildHybridScale } from "./dynamic-scales.js";
 import { HybridScaleType } from "./types.js";
@@ -7,10 +7,11 @@ function buildCompositeScaleInfo(inputScales, unconformityHeight) {
   let totalHeight = unconformityHeight / 2;
   let lastSectionTopHeight = 0;
   const packages2 = [];
-  for (const group of inputScales) {
+  for (let i = 0; i < inputScales.length; i++) {
+    const group = inputScales[i];
     const { domain, scale } = group;
     const [b_age, t_age] = domain;
-    const key = `package-${b_age}-${t_age}`;
+    const key = `package-${i}`;
     packages2.push({
       ...createPackageScale(group, totalHeight),
       key,
@@ -77,6 +78,7 @@ function buildSectionScale(data, opts) {
     minPixelScale = 0.2,
     axisType,
     minSectionHeight,
+    visibleWindow,
     scale,
     hybridScale
   } = opts;
@@ -95,7 +97,7 @@ function buildSectionScale(data, opts) {
   }
   if (scale == null) {
     if (_pixelScale == null) {
-      const avgAgeRange = findAverageUnitHeight(data, axisType);
+      const avgAgeRange = findAverageUnitHeight(data, axisType, visibleWindow);
       _pixelScale = Math.max(targetUnitHeight / avgAgeRange, minPixelScale);
     }
     let height = dAge * _pixelScale;
@@ -110,6 +112,78 @@ function buildSectionScale(data, opts) {
     0
   );
 }
+function resolveWindowScales(sections, focalWindow, floor) {
+  const [b_focal, t_focal] = focalWindow;
+  const scales = /* @__PURE__ */ new Map();
+  for (const section of sections) {
+    const t_age = Math.max(section.t_age, t_focal);
+    const b_age = Math.min(section.b_age, b_focal);
+    if (b_age <= t_age) continue;
+    const natural = section.scaleInfo.pixelScale;
+    if (!(natural > 0)) continue;
+    const isClipped = b_age < section.b_age || t_age > section.t_age;
+    const needed = isClipped && floor > 0 ? floor / (b_age - t_age) : 0;
+    scales.set(section, Math.max(natural, needed));
+  }
+  return scales;
+}
+function padWindowByPixels(sections, window, padding, scaleFor) {
+  if (!(padding > 0) || sections.length === 0) return window;
+  const [b_age, t_age] = window;
+  return [
+    spendOutward(sections, b_age, 1, padding, scaleFor),
+    spendOutward(sections, t_age, -1, padding, scaleFor)
+  ];
+}
+function spendOutward(sections, edge, direction, padding, scaleFor) {
+  const beyond = sections.filter(
+    (s) => direction * (s.b_age - edge) > 0 || direction * (s.t_age - edge) > 0
+  ).sort((a, b) => direction * (nearEdge(a, direction) - nearEdge(b, direction)));
+  let bound = edge;
+  let budget = padding;
+  for (const section of beyond) {
+    const pixelScale = scaleFor(section);
+    if (!(pixelScale > 0)) continue;
+    const from = direction > 0 ? Math.max(section.t_age, bound) : Math.min(section.b_age, bound);
+    const available = direction > 0 ? section.b_age - from : from - section.t_age;
+    if (available <= 0) continue;
+    const cost = available * pixelScale;
+    if (budget <= cost) return from + direction * (budget / pixelScale);
+    bound = direction > 0 ? section.b_age : section.t_age;
+    budget -= cost;
+  }
+  return bound;
+}
+function nearEdge(section, direction) {
+  return direction > 0 ? section.t_age : section.b_age;
+}
+function trimSectionsToWindow(sections, window, scaleFor) {
+  const [b_win, t_win] = window;
+  const out = [];
+  for (const section of sections) {
+    const t_age = Math.max(section.t_age, t_win);
+    const b_age = Math.min(section.b_age, b_win);
+    if (b_age <= t_age) continue;
+    const pixelScale = scaleFor(section);
+    if (b_age === section.b_age && t_age === section.t_age && pixelScale === section.scaleInfo.pixelScale) {
+      out.push(section);
+      continue;
+    }
+    out.push({
+      ...section,
+      t_age,
+      b_age,
+      units: section.units.filter((u) => agesOverlap(u, { t_age, b_age })),
+      scaleInfo: createPackageScale({
+        domain: [b_age, t_age],
+        pixelScale,
+        pixelHeight: (b_age - t_age) * pixelScale,
+        scale: null
+      })
+    });
+  }
+  return out;
+}
 function createPackageScale(def, offset = 0) {
   const { domain, pixelScale, pixelHeight, scale, heightScale } = def;
   if (scale == null && pixelScale == null) {
@@ -157,12 +231,21 @@ function findSectionHeightRange(data, axisType) {
     return [b_pos, t_pos];
   }
 }
-function findAverageUnitHeight(data, axisType) {
-  const unitHeights = data.map((d) => {
+function findAverageUnitHeight(data, axisType, visibleWindow) {
+  const durations = (clip) => data.map((d) => {
     const [b_pos, t_pos] = getUnitHeightRange(d, axisType);
-    return Math.abs(b_pos - t_pos);
-  });
-  return unitHeights.reduce((a, b) => a + b, 0) / unitHeights.length;
+    if (!clip) return Math.abs(b_pos - t_pos);
+    const [b_win, t_win] = visibleWindow;
+    return Math.max(
+      0,
+      Math.min(b_pos, b_win) - Math.max(t_pos, t_win)
+    );
+  }).filter((d) => d > 0);
+  const useWindow = visibleWindow != null && axisType === ColumnAxisType.AGE;
+  let heights = useWindow ? durations(true) : [];
+  if (heights.length === 0) heights = durations(false);
+  if (heights.length === 0) return 1;
+  return heights.reduce((a, b) => a + b, 0) / heights.length;
 }
 function createCompositeScale(sections, interpolateUnconformities = false) {
   const scales = [];
@@ -278,6 +361,9 @@ export {
   computeSectionHeights,
   createCompositeScale,
   createPackageScale,
-  finalizeSectionHeights
+  finalizeSectionHeights,
+  padWindowByPixels,
+  resolveWindowScales,
+  trimSectionsToWindow
 };
 //# sourceMappingURL=composite-scale.js.map

package/dist/prepare-units/composite-scale.js.map

@@ -1 +1 @@
-{"version":3,"file":"composite-scale.js","sources":["../../src/prepare-units/composite-scale.ts"],"sourcesContent":["import { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { ensureArray, getUnitHeightRange } from \"./utils\";\nimport { ScaleContinuousNumeric, scaleLinear } from \"d3-scale\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport { buildHybridScale } from \"./dynamic-scales\";\nimport { ExtUnit, HybridScaleType, SectionInfo } from \"./types\";\nimport type {\n  ColumnScaleOptions,\n  CompositeColumnData,\n  CompositeScaleData,\n  PackageLayoutData,\n  PackageScaleInfo,\n  PackageScaleLayoutData,\n  SectionScaleOptions,\n} from \"./types\";\n\n// Composite scale information augmented with units in each package\n\nexport function buildCompositeScaleInfo(\n  inputScales: PackageScaleInfo[],\n  unconformityHeight: number,\n): CompositeScaleData {\n  /** Finalize the heights of sections, including the heights of unconformities\n   * between them.\n   */\n\n  let totalHeight = unconformityHeight / 2;\n  let lastSectionTopHeight = 0;\n\n  const packages2: PackageScaleLayoutData[] = [];\n  for (const group of inputScales) {\n    const { domain, scale } = group;\n    const [b_age, t_age] = domain;\n    const key = `package-${b_age}-${t_age}`;\n\n    packages2.push({\n      ...createPackageScale(group, totalHeight),\n      key,\n      offset: totalHeight,\n      // Unconformity height above this particular section\n      paddingTop: totalHeight - lastSectionTopHeight,\n    });\n\n    const pixelHeight = Math.abs(scale(b_age) - scale(t_age));\n    lastSectionTopHeight = totalHeight + pixelHeight;\n    totalHeight = lastSectionTopHeight + unconformityHeight;\n  }\n  totalHeight += unconformityHeight / 2;\n  return {\n    totalHeight,\n    sections: packages2,\n  };\n}\n\nexport function finalizeSectionHeights<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  unconformityHeight: number,\n): CompositeColumnData<T> {\n  /** Finalize the heights of sections, including the heights of unconformities\n   * between them.\n   */\n\n  const sectionScales = sections.map((d) => d.scaleInfo);\n\n  const { totalHeight, sections: packages } = buildCompositeScaleInfo(\n    sectionScales,\n    unconformityHeight,\n  );\n\n  // This could perhaps be simplified.\n  const sections1: PackageLayoutData<T>[] = [];\n  for (const i in sections) {\n    const group = sections[i];\n    const scaleInfo = packages[i];\n    sections1.push({\n      ...group,\n      key: scaleInfo.key,\n      scaleInfo,\n    });\n  }\n  return {\n    totalHeight,\n    sections: sections1,\n  };\n}\n\nexport interface SectionInfoWithScale<\n  T extends UnitLong = ExtUnit,\n> extends SectionInfo<T> {\n  scaleInfo: PackageScaleInfo;\n}\n\nexport function computeSectionHeights<T extends UnitLong>(\n  sections: SectionInfo<T>[],\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T>[] {\n  return sections.map((group) => {\n    return addScaleToSection<T>(group, opts);\n  });\n}\n\nfunction addScaleToSection<T extends UnitLong = ExtUnit>(\n  group: SectionInfo<T>,\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T> {\n  const { t_age, b_age, t_pos, b_pos, units } = group;\n  let _range = null;\n  // if t_age and b_age are set for a group, use them to define the range...\n  if (opts.axisType == ColumnAxisType.AGE) {\n    _range = [b_age, t_age];\n  } else {\n    _range = [b_pos, t_pos];\n  }\n\n  const scaleInfo = buildSectionScale<T>(units, {\n    ...opts,\n    domain: _range,\n  });\n\n  return {\n    ...group,\n    scaleInfo,\n  };\n}\n\nfunction buildSectionScale<T extends UnitLong>(\n  data: T[],\n  opts: SectionScaleOptions,\n): PackageScaleInfo {\n  const {\n    targetUnitHeight = 20,\n    minPixelScale = 0.2,\n    axisType,\n    minSectionHeight,\n    scale,\n    hybridScale,\n  } = opts;\n  const domain = opts.domain ?? findSectionHeightRange(data, axisType);\n\n  const dAge = Math.abs(domain[0] - domain[1]);\n\n  let _pixelScale = opts.pixelScale;\n  let pixelHeight: number;\n\n  if (hybridScale != null) {\n    /** In an equidistant surfaces scale, we want to determine the heights of surfaces\n     * and then distribute units evenly between them.\n     * This is somewhat like an ordinal scale\n     */\n    if (hybridScale.type === HybridScaleType.EquidistantSurfaces) {\n      _pixelScale ??= targetUnitHeight;\n    }\n\n    return buildHybridScale(hybridScale, data, domain, {\n      pixelOffset: 0,\n      pixelScale: _pixelScale,\n    });\n  }\n\n  if (scale == null) {\n    if (_pixelScale == null) {\n      const avgAgeRange = findAverageUnitHeight(data, axisType);\n      // Get pixel height necessary to render average unit at target height\n      _pixelScale = Math.max(targetUnitHeight / avgAgeRange, minPixelScale);\n\n      // OLD METHOD that cares about overall section height vs. individual unit height\n      // 0.2 pixel per myr is the floor scale\n      //const targetHeight = targetUnitHeight * data.length;\n      // 1 pixel per myr is the floor scale\n      //_pixelScale = Math.max(targetHeight / dAge, minPixelScale);\n    }\n\n    let height = dAge * _pixelScale;\n    // If height is less than minSectionHeight, set it to minSectionHeight\n    const _minSectionHeight = minSectionHeight ?? targetUnitHeight ?? 0;\n    pixelHeight = Math.max(height, _minSectionHeight);\n    _pixelScale = pixelHeight / dAge;\n  } else {\n    // If a scale is provided, use it to compute pixel height\n    pixelHeight = Math.abs(scale(domain[0]) - scale(domain[1]));\n  }\n\n  return createPackageScale(\n    { scale, domain, pixelHeight, pixelScale: _pixelScale },\n    0,\n  );\n}\n\nexport function createPackageScale(\n  def: PackageScaleInfo,\n  offset: number = 0,\n): PackageScaleInfo {\n  /** Build a section scale */\n  // Domain should be oriented from bottom to top, but scale is oriented from top to bottom\n  const { domain, pixelScale, pixelHeight, scale, heightScale } = def;\n\n  if (scale == null && pixelScale == null) {\n    throw new Error(\"Either scale or pixelScale must be provided\");\n  }\n\n  let _scale: ScaleContinuousNumeric<number, number>;\n  if (scale == null) {\n    _scale = scaleLinear()\n      .domain([domain[1], domain[0]])\n      .range([offset, pixelHeight + offset]);\n  } else {\n    const domain0 = scale.domain();\n    const range0 = scale.range();\n    _scale = scale\n      .copy()\n      .domain(domain0)\n      .range(range0.map((d) => d + offset));\n  }\n\n  _scale.clamp();\n\n  let _heightScale = null;\n  if (heightScale != null) {\n    // Adjust height scale as well\n    const range0 = scale.range();\n    _heightScale = heightScale.copy().range(range0.map((d) => d + offset));\n    _heightScale.clamp();\n  }\n\n  return {\n    domain,\n    pixelScale,\n    pixelHeight,\n    scale: _scale,\n    // Internal details for hybrid scales. TODO: improve this\n    heightScale: _heightScale,\n  };\n}\n\nfunction findSectionHeightRange(\n  data: UnitLong[],\n  axisType: ColumnAxisType,\n): [number, number] {\n  if (axisType == null) {\n    throw new Error(\"Axis type is not set\");\n  }\n  if (axisType === ColumnAxisType.AGE) {\n    const t_age = Math.min(...data.map((d) => d.t_age));\n    const b_age = Math.max(...data.map((d) => d.b_age));\n    return [b_age, t_age];\n  } else if (\n    axisType == ColumnAxisType.DEPTH ||\n    axisType == ColumnAxisType.ORDINAL\n  ) {\n    const t_pos = Math.min(...data.map((d) => d.t_pos));\n    const b_pos = Math.max(...data.map((d) => d.b_pos));\n    return [b_pos, t_pos];\n  } else if (axisType == ColumnAxisType.HEIGHT) {\n    const t_pos = Math.max(...data.map((d) => d.t_pos));\n    const b_pos = Math.min(...data.map((d) => d.b_pos));\n    return [b_pos, t_pos];\n  }\n}\n\nfunction findAverageUnitHeight(\n  data: UnitLong[],\n  axisType: ColumnAxisType,\n): number {\n  const unitHeights = data.map((d) => {\n    const [b_pos, t_pos] = getUnitHeightRange(d, axisType);\n    return Math.abs(b_pos - t_pos);\n  });\n  return unitHeights.reduce((a, b) => a + b, 0) / unitHeights.length;\n}\n\nexport interface CompositeColumnScale {\n  (age: number): number | null;\n  copy(): CompositeColumnScale;\n  domain(): [number, number];\n  invert(pixelHeight: number): number | null;\n  clamp(clamp: boolean): void;\n}\n\nexport function createCompositeScale(\n  sections: PackageLayoutData[],\n  interpolateUnconformities: boolean = false,\n): CompositeColumnScale {\n  /** Create a scale that works across multiple packages */\n\n  const scales: ScaleContinuousNumeric<number, number>[] = [];\n\n  let lastScale: ScaleContinuousNumeric<number, number> | null = null;\n  for (const section of sections) {\n    const _scale = section.scaleInfo.scale.copy().clamp(true);\n    scales.push(_scale);\n    if (lastScale != null && interpolateUnconformities) {\n      // Add a new scale that interpolates between lastScale and _scale\n      const lastDomain = lastScale.domain();\n      const lastRange = lastScale.range();\n      const currentDomain = _scale.domain();\n      const currentRange = _scale.range();\n\n      const interpScale = scaleLinear()\n        .domain([lastDomain[lastDomain.length - 1], currentDomain[0]])\n        .range([lastRange[lastRange.length - 1], currentRange[0]])\n        .clamp(true);\n      scales.push(interpScale);\n    }\n    lastScale = _scale;\n  }\n\n  const scale: CompositeColumnScale = (age) => {\n    for (const s of scales) {\n      const domain = s.domain();\n      if (\n        domain[0] < domain[domain.length - 1] &&\n        age >= domain[0] &&\n        age <= domain[domain.length - 1]\n      ) {\n        // Age axes\n        return s(age);\n      } else if (age <= domain[0] && age >= domain[domain.length - 1]) {\n        // Normal axes like height\n        return s(age);\n      }\n    }\n    return null;\n  };\n\n  scale.copy = () => {\n    return createCompositeScale(sections, interpolateUnconformities);\n  };\n\n  scale.domain = () => {\n    /** Return the domain of the scale */\n    const vals = sections.flatMap((d) => d.scaleInfo.domain);\n    if (vals[0] < vals[vals.length - 1]) {\n      // age axes\n      return [Math.min(...vals), Math.max(...vals)];\n    }\n    // Normal axes like height\n    return [Math.max(...vals), Math.min(...vals)];\n  };\n\n  scale.invert = (pixelHeight) => {\n    /** Invert the scale to get the age at a given pixel height */\n    // Iterate through the sections to find the correct one\n    for (const scale of scales) {\n      const range = scale.range();\n      if (\n        pixelHeight > Math.min(...range) &&\n        pixelHeight <= Math.max(...range)\n      ) {\n        //console.log(\"Inverting scale at pixel height\", pixelHeight);\n        return scale.invert(pixelHeight);\n      }\n    }\n    return null;\n  };\n\n  scale.clamp = (clamp: boolean) => {\n    /** Clamp all constituent scales */\n    for (const s of scales) {\n      s.clamp(clamp);\n    }\n  };\n\n  return scale;\n}\n\n/** Collapse sections separated by unconformities that are smaller than a given pixel height. */\nexport function collapseUnconformitiesByPixelHeight<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  threshold: number,\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T>[] {\n  const newSections = [];\n  let currentSection: SectionInfoWithScale<T> | null = null;\n  for (const nextSection of sections) {\n    if (currentSection == null) {\n      currentSection = nextSection;\n      continue;\n    }\n    let heights: [number, number];\n    let pxHeights: [number, number];\n    if (opts.axisType !== ColumnAxisType.AGE) {\n      heights = [nextSection.t_pos, currentSection.b_pos];\n    } else {\n      heights = [nextSection.t_age, currentSection.b_age];\n    }\n\n    const _diff = (vals: number[]) => {\n      return Math.abs(vals[0] - vals[1]);\n    };\n\n    pxHeights = [\n      _diff(heights.map(nextSection.scaleInfo.scale)),\n      _diff(heights.map(currentSection.scaleInfo.scale)),\n    ];\n\n    const pxHeight = Math.min(...pxHeights);\n\n    if (pxHeight < threshold) {\n      let t_pos: number;\n      let b_pos: number;\n      if (\n        opts.axisType == ColumnAxisType.AGE ||\n        opts.axisType == ColumnAxisType.DEPTH\n      ) {\n        t_pos = Math.min(currentSection.t_pos, nextSection.t_pos);\n        b_pos = Math.max(currentSection.b_pos, nextSection.b_pos);\n      } else {\n        t_pos = Math.max(currentSection.t_pos, nextSection.t_pos);\n        b_pos = Math.min(currentSection.b_pos, nextSection.b_pos);\n      }\n\n      // We need to merge the sections\n      const compositeSection0: SectionInfo<T> = {\n        units: [...currentSection.units, ...nextSection.units],\n        section_id: [\n          ...ensureArray(currentSection.section_id),\n          ...ensureArray(nextSection.section_id),\n        ],\n        t_age: Math.min(currentSection.t_age, nextSection.t_age),\n        b_age: Math.max(currentSection.b_age, nextSection.b_age),\n        t_pos,\n        b_pos,\n      };\n\n      currentSection = addScaleToSection(compositeSection0, opts);\n    } else {\n      // We need to keep the section\n      newSections.push(currentSection);\n      currentSection = nextSection;\n    }\n  }\n  if (currentSection != null) {\n    newSections.push(currentSection);\n  }\n\n  return 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An age-based key (`package-${b_age}-${t_age}`)\n    // changes every frame while the age window animates, forcing every package,\n    // column, and timescale slice in the correlation chart to remount each frame.\n    const key = `package-${i}`;\n\n    packages2.push({\n      ...createPackageScale(group, totalHeight),\n      key,\n      offset: totalHeight,\n      // Unconformity height above this particular section\n      paddingTop: totalHeight - lastSectionTopHeight,\n    });\n\n    const pixelHeight = Math.abs(scale(b_age) - scale(t_age));\n    lastSectionTopHeight = totalHeight + pixelHeight;\n    totalHeight = lastSectionTopHeight + unconformityHeight;\n  }\n  totalHeight += unconformityHeight / 2;\n  return {\n    totalHeight,\n    sections: packages2,\n  };\n}\n\nexport function finalizeSectionHeights<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  unconformityHeight: number,\n): CompositeColumnData<T> {\n  /** Finalize the heights of sections, including the heights of unconformities\n   * between them.\n   */\n\n  const sectionScales = sections.map((d) => d.scaleInfo);\n\n  const { totalHeight, sections: packages } = buildCompositeScaleInfo(\n    sectionScales,\n    unconformityHeight,\n  );\n\n  // This could perhaps be simplified.\n  const sections1: PackageLayoutData<T>[] = [];\n  for (const i in sections) {\n    const group = sections[i];\n    const scaleInfo = packages[i];\n    sections1.push({\n      ...group,\n      key: scaleInfo.key,\n      scaleInfo,\n    });\n  }\n  return {\n    totalHeight,\n    sections: sections1,\n  };\n}\n\nexport interface SectionInfoWithScale<\n  T extends UnitLong = ExtUnit,\n> extends SectionInfo<T> {\n  scaleInfo: PackageScaleInfo;\n}\n\nexport function computeSectionHeights<T extends UnitLong>(\n  sections: SectionInfo<T>[],\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T>[] {\n  return sections.map((group) => {\n    return addScaleToSection<T>(group, opts);\n  });\n}\n\nfunction addScaleToSection<T extends UnitLong = ExtUnit>(\n  group: SectionInfo<T>,\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T> {\n  const { t_age, b_age, t_pos, b_pos, units } = group;\n  let _range = null;\n  // if t_age and b_age are set for a group, use them to define the range...\n  if (opts.axisType == ColumnAxisType.AGE) {\n    _range = [b_age, t_age];\n  } else {\n    _range = [b_pos, t_pos];\n  }\n\n  const scaleInfo = buildSectionScale<T>(units, {\n    ...opts,\n    domain: _range,\n  });\n\n  return {\n    ...group,\n    scaleInfo,\n  };\n}\n\nfunction buildSectionScale<T extends UnitLong>(\n  data: T[],\n  opts: SectionScaleOptions,\n): PackageScaleInfo {\n  const {\n    targetUnitHeight = 20,\n    minPixelScale = 0.2,\n    axisType,\n    minSectionHeight,\n    visibleWindow,\n    scale,\n    hybridScale,\n  } = opts;\n  const domain = opts.domain ?? 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Resolving this **before** padding\n * matters: padding is a pixel margin measured at the density it will render at,\n * and a section stretched to the floor afterwards would multiply the margin\n * along with everything else (a 20 px margin in a band stretched 4× renders at\n * 80 px, and asymmetrically so whenever one side is truncated).\n *\n * Sections the window leaves whole keep their laid-out density — they already\n * met the floor when they were sized.\n */\nexport function resolveWindowScales<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  focalWindow: [number, number],\n  floor: number,\n): Map<SectionInfoWithScale<T>, number> {\n  const [b_focal, t_focal] = focalWindow;\n  const scales = new Map<SectionInfoWithScale<T>, number>();\n\n  for (const section of sections) {\n    const t_age = Math.max(section.t_age, t_focal);\n    const b_age = Math.min(section.b_age, b_focal);\n    // Sections outside the focal window are visible only as padding; they keep\n    // their own density and render exactly the pixels asked for.\n    if (b_age <= t_age) continue;\n\n    const natural = section.scaleInfo.pixelScale;\n    if (!(natural > 0)) continue;\n\n    const isClipped = b_age < section.b_age || t_age > section.t_age;\n    const needed = isClipped && floor > 0 ? floor / (b_age - t_age) : 0;\n    scales.set(section, Math.max(natural, needed));\n  }\n  return scales;\n}\n\n/**\n * Expand an age window outward by `padding` **pixels** of column, spending the\n * budget against sections that are already laid out at full extent, at the\n * densities they will finally render at (`scaleFor`).\n *\n * Because the layout is done, this is exact rather than predicted: each section\n * contributes its own real pixel height. Padding collapses when the column runs\n * out on that side.\n *\n * Unconformities between sections cost nothing. They render at a fixed height\n * that's typically larger than the padding itself (30–60 px), so charging them\n * would mean padding could never reach across a gap — which is the case it\n * exists for: revealing the neighboring section keeps its timescale intervals\n * navigable. 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Math.max(section.t_age, bound)\n        : Math.min(section.b_age, bound);\n    const available = direction > 0 ? section.b_age - from : from - section.t_age;\n    if (available <= 0) continue;\n\n    const cost = available * pixelScale;\n    if (budget <= cost) return from + direction * (budget / pixelScale);\n\n    bound = direction > 0 ? section.b_age : section.t_age;\n    budget -= cost;\n  }\n  return bound;\n}\n\n/** The age at which a section starts, measured from the window edge outward. */\nfunction nearEdge<T extends UnitLong>(\n  section: SectionInfoWithScale<T>,\n  direction: 1 | -1,\n): number {\n  return direction > 0 ? section.t_age : section.b_age;\n}\n\n/**\n * Clip laid-out sections to the rendered window — the last step of layout, so\n * that every section has already been sized (and floored) at its full extent.\n * Each section renders at the density `scaleFor` resolved for it, which is what\n * keeps a padding margin the same number of pixels as the band it borders is\n * stretched to meet `minSectionHeight`.\n */\nexport function trimSectionsToWindow<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  window: [number, number],\n  scaleFor: (section: SectionInfoWithScale<T>) => number,\n): SectionInfoWithScale<T>[] {\n  const [b_win, t_win] = window;\n  const out: SectionInfoWithScale<T>[] = [];\n\n  for (const section of sections) {\n    const t_age = Math.max(section.t_age, t_win);\n    const b_age = Math.min(section.b_age, b_win);\n    if (b_age <= t_age) continue;\n\n    const pixelScale = scaleFor(section);\n    if (\n      b_age === section.b_age &&\n      t_age === section.t_age &&\n      pixelScale === section.scaleInfo.pixelScale\n    ) {\n      out.push(section);\n      continue;\n    }\n\n    out.push({\n      ...section,\n      t_age,\n      b_age,\n      units: section.units.filter((u) => agesOverlap(u, { t_age, b_age })),\n      scaleInfo: createPackageScale({\n        domain: [b_age, t_age],\n        pixelScale,\n        pixelHeight: (b_age - t_age) * pixelScale,\n        scale: null,\n      }),\n    });\n  }\n  return out;\n}\n\nexport function createPackageScale(\n  def: PackageScaleInfo,\n  offset: number = 0,\n): PackageScaleInfo {\n  /** Build a section scale */\n  // Domain should be oriented from bottom to top, but scale is oriented from top to bottom\n  const { domain, pixelScale, pixelHeight, scale, heightScale } = def;\n\n  if (scale == null && pixelScale == null) {\n    throw new Error(\"Either scale or pixelScale must be provided\");\n  }\n\n  let _scale: ScaleContinuousNumeric<number, number>;\n  if (scale == null) {\n    _scale = scaleLinear()\n      .domain([domain[1], domain[0]])\n      .range([offset, pixelHeight + offset]);\n  } else {\n    const domain0 = scale.domain();\n    const range0 = scale.range();\n    _scale = scale\n      .copy()\n      .domain(domain0)\n      .range(range0.map((d) => d + offset));\n  }\n\n  _scale.clamp();\n\n  let _heightScale = null;\n  if (heightScale != null) {\n    // Adjust height scale as well\n    const range0 = scale.range();\n    _heightScale = heightScale.copy().range(range0.map((d) => d + offset));\n    _heightScale.clamp();\n  }\n\n  return {\n    domain,\n    pixelScale,\n    pixelHeight,\n    scale: _scale,\n    // Internal details for hybrid scales. TODO: improve this\n    heightScale: _heightScale,\n  };\n}\n\nfunction findSectionHeightRange(\n  data: UnitLong[],\n  axisType: ColumnAxisType,\n): [number, number] {\n  if (axisType == null) {\n    throw new Error(\"Axis type is not set\");\n  }\n  if (axisType === ColumnAxisType.AGE) {\n    const t_age = Math.min(...data.map((d) => d.t_age));\n    const b_age = Math.max(...data.map((d) => d.b_age));\n    return [b_age, t_age];\n  } else if (\n    axisType == ColumnAxisType.DEPTH ||\n    axisType == ColumnAxisType.ORDINAL\n  ) {\n    const t_pos = Math.min(...data.map((d) => d.t_pos));\n    const b_pos = Math.max(...data.map((d) => d.b_pos));\n    return [b_pos, t_pos];\n  } else if (axisType == ColumnAxisType.HEIGHT) {\n    const t_pos = Math.max(...data.map((d) => d.t_pos));\n    const b_pos = Math.min(...data.map((d) => d.b_pos));\n    return [b_pos, t_pos];\n  }\n}\n\nfunction findAverageUnitHeight(\n  data: UnitLong[],\n  axisType: ColumnAxisType,\n  visibleWindow?: [number, number] | null,\n): number {\n  /** The typical duration of a unit, which `targetUnitHeight` sizes.\n   *\n   * Measured over what the render window actually *shows* — units outside it\n   * are ignored and a unit it cuts through counts only for its visible part.\n   * That's what makes `targetUnitHeight` mean the same thing at every zoom\n   * depth: the units on screen are drawn at the target height whether they're\n   * whole or slivers of something much longer.\n   *\n   * A section the window doesn't reach has nothing visible to measure, so it\n   * falls back to its own units at full duration — it's drawn at its own scale.\n   * (Deriving it from the padded window instead would be circular: padding is\n   * measured in pixels, which is what we're trying to establish.)\n   */\n  const durations = (clip: boolean) =>\n    data\n      .map((d) => {\n        const [b_pos, t_pos] = getUnitHeightRange(d, axisType);\n        if (!clip) return Math.abs(b_pos - t_pos);\n        const [b_win, t_win] = visibleWindow;\n        return Math.max(\n          0,\n          Math.min(b_pos, b_win) - Math.max(t_pos, t_win),\n        );\n      })\n      .filter((d) => d > 0);\n\n  const useWindow = visibleWindow != null && axisType === ColumnAxisType.AGE;\n  let heights = useWindow ? durations(true) : [];\n  if (heights.length === 0) heights = durations(false);\n  if (heights.length === 0) return 1;\n\n  return heights.reduce((a, b) => a + b, 0) / heights.length;\n}\n\nexport interface CompositeColumnScale {\n  (age: number): number | null;\n  copy(): CompositeColumnScale;\n  domain(): [number, number];\n  invert(pixelHeight: number): number | null;\n  clamp(clamp: boolean): void;\n}\n\nexport function createCompositeScale(\n  sections: PackageLayoutData[],\n  interpolateUnconformities: boolean = false,\n): CompositeColumnScale {\n  /** Create a scale that works across multiple packages */\n\n  const scales: ScaleContinuousNumeric<number, number>[] = [];\n\n  let lastScale: ScaleContinuousNumeric<number, number> | null = null;\n  for (const section of sections) {\n    const _scale = section.scaleInfo.scale.copy().clamp(true);\n    scales.push(_scale);\n    if (lastScale != null && interpolateUnconformities) {\n      // Add a new scale that interpolates between lastScale and _scale\n      const lastDomain = lastScale.domain();\n      const lastRange = lastScale.range();\n      const currentDomain = _scale.domain();\n      const currentRange = _scale.range();\n\n      const interpScale = scaleLinear()\n        .domain([lastDomain[lastDomain.length - 1], currentDomain[0]])\n        .range([lastRange[lastRange.length - 1], currentRange[0]])\n        .clamp(true);\n      scales.push(interpScale);\n    }\n    lastScale = _scale;\n  }\n\n  const scale: CompositeColumnScale = (age) => {\n    for (const s of scales) {\n      const domain = s.domain();\n      if (\n        domain[0] < domain[domain.length - 1] &&\n        age >= domain[0] &&\n        age <= domain[domain.length - 1]\n      ) {\n        // Age axes\n        return s(age);\n      } else if (age <= domain[0] && age >= domain[domain.length - 1]) {\n        // Normal axes like height\n        return s(age);\n      }\n    }\n    return null;\n  };\n\n  scale.copy = () => {\n    return createCompositeScale(sections, interpolateUnconformities);\n  };\n\n  scale.domain = () => {\n    /** Return the domain of the scale */\n    const vals = sections.flatMap((d) => d.scaleInfo.domain);\n    if (vals[0] < vals[vals.length - 1]) {\n      // age axes\n      return [Math.min(...vals), Math.max(...vals)];\n    }\n    // Normal axes like height\n    return [Math.max(...vals), Math.min(...vals)];\n  };\n\n  scale.invert = (pixelHeight) => {\n    /** Invert the scale to get the age at a given pixel height */\n    // Iterate through the sections to find the correct one\n    for (const scale of scales) {\n      const range = scale.range();\n      if (\n        pixelHeight > Math.min(...range) &&\n        pixelHeight <= Math.max(...range)\n      ) {\n        //console.log(\"Inverting scale at pixel height\", pixelHeight);\n        return scale.invert(pixelHeight);\n      }\n    }\n    return null;\n  };\n\n  scale.clamp = (clamp: boolean) => {\n    /** Clamp all constituent scales */\n    for (const s of scales) {\n      s.clamp(clamp);\n    }\n  };\n\n  return scale;\n}\n\n/** Collapse sections separated by unconformities that are smaller than a given pixel height. */\nexport function collapseUnconformitiesByPixelHeight<T extends UnitLong>(\n  sections: SectionInfoWithScale<T>[],\n  threshold: number,\n  opts: ColumnScaleOptions,\n): SectionInfoWithScale<T>[] {\n  const newSections = [];\n  let currentSection: SectionInfoWithScale<T> | null = null;\n  for (const nextSection of sections) {\n    if (currentSection == null) {\n      currentSection = nextSection;\n      continue;\n    }\n    let heights: [number, number];\n    let pxHeights: [number, number];\n    if (opts.axisType !== ColumnAxisType.AGE) {\n      heights = [nextSection.t_pos, currentSection.b_pos];\n    } else {\n      heights = [nextSection.t_age, currentSection.b_age];\n    }\n\n    const _diff = (vals: number[]) => {\n      return Math.abs(vals[0] - vals[1]);\n    };\n\n    pxHeights = [\n      _diff(heights.map(nextSection.scaleInfo.scale)),\n      _diff(heights.map(currentSection.scaleInfo.scale)),\n    ];\n\n    const pxHeight = Math.min(...pxHeights);\n\n    if (pxHeight < threshold) {\n      let t_pos: number;\n      let b_pos: number;\n      if (\n        opts.axisType == ColumnAxisType.AGE ||\n        opts.axisType == ColumnAxisType.DEPTH\n      ) {\n        t_pos = Math.min(currentSection.t_pos, nextSection.t_pos);\n        b_pos = Math.max(currentSection.b_pos, nextSection.b_pos);\n      } else {\n        t_pos = Math.max(currentSection.t_pos, nextSection.t_pos);\n        b_pos = Math.min(currentSection.b_pos, nextSection.b_pos);\n      }\n\n      // We need to merge 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package/dist/prepare-units/helpers.cjs

@@ -24,7 +24,6 @@ class UnitGroup {
 }
 function groupUnitsByMutualOverlap(units, tolerance = dt, axisType = columnComponents.ColumnAxisType.AGE) {
   const sections = groupUnitsIntoSectionsByOverlap(units, axisType, tolerance);
-  console.log("Grouped sections", sections);
   return sections.map((d) => {
     return new UnitGroup(d.units, axisType);
   });

package/dist/prepare-units/helpers.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"helpers.cjs","sources":["../../src/prepare-units/helpers.ts"],"sourcesContent":["import type { BaseUnit, UnitLong } from \"@macrostrat/api-types\";\nimport { group } from \"d3-array\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport {\n  createUnitSorter,\n  ensureArray,\n  ensureRealFloat,\n  getUnitHeightRange,\n  unitsOverlap,\n} from \"./utils\";\nimport {\n  AgeRangeRelationship,\n  compareAgeRanges,\n  mergeAgeRanges,\n  MergeMode,\n} from \"@macrostrat/stratigraphy-utils\";\nimport type { ExtUnit, SectionInfo, StratigraphicPackage } from \"./types\";\n\nconst dt = 0.001;\n\nexport type UnitWithLayoutParameters<T extends BaseUnit> = T & {\n  layout: UnitLayoutData<T>;\n};\n\nexport type UnitWithLayoutHints<T extends BaseUnit> = T & {\n  layoutHints?: UnitLayoutHints;\n};\n\ninterface UnitLayoutInfo {\n  column: number;\n  nColumns: number;\n}\n\ntype UnitLayoutHints = Partial<UnitLayoutInfo>;\n\ntype UnitLayoutData<T extends BaseUnit> = UnitLayoutInfo & {\n  totalColumns: number;\n  unitGroup: UnitGroup<T>;\n};\n\nclass UnitGroup<T extends BaseUnit> implements StratigraphicPackage {\n  units: T[];\n  axisType: ColumnAxisType;\n\n  constructor(units: T[], axisType: ColumnAxisType = ColumnAxisType.AGE) {\n    this.units = units;\n    this.axisType = axisType;\n  }\n\n  get t_age(): number {\n    return Math.min(...this.units.map((d) => d.t_age));\n  }\n\n  get b_age(): number {\n    return Math.max(...this.units.map((d) => d.b_age));\n  }\n\n  getUnits(): UnitWithLayoutParameters<T>[] {\n    return assignColumnsToUnitsWithinOverlappingGroup(this);\n  }\n}\n\nfunction groupUnitsByMutualOverlap<T extends BaseUnit>(\n  units: T[],\n  tolerance: number = dt,\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): UnitGroup<T>[] {\n  /** Group units within a section that have mutual overlap. */\n\n  const sections = groupUnitsIntoSectionsByOverlap(units, axisType, tolerance);\n\n  console.log(\"Grouped sections\", sections);\n\n  return sections.map((d) => {\n    return new UnitGroup(d.units, axisType);\n  });\n}\n\nconst sortByAge = createUnitSorter(ColumnAxisType.AGE);\n\nfunction assignColumnsToUnitsWithinOverlappingGroup<T extends BaseUnit>(\n  group: UnitGroup<UnitWithLayoutHints<T>>,\n): UnitWithLayoutParameters<T>[] {\n  /** A relatively naïve function to assign columns to units within a mutually overlapping group.\n   * This gets the number of columns that would be needed to accommodate the units in the group.\n   * It then assigns columns to units in the group based on the number of columns needed, with\n   * lower units further to the left.\n   */\n\n  const sortedUnits = [...group.units].sort(createUnitSorter(group.axisType));\n\n  const columns: T[][] = [];\n\n  let nColumns = 1;\n\n  for (const unit of sortedUnits) {\n    let startIndex = 0;\n    let endIndex = 0;\n    // Find a column that is not already occupied by an overlapping unit\n    const colHint = unit.layoutHints?.column;\n    if (colHint != null) {\n      columns[colHint] ??= [];\n      columns[colHint].push(unit);\n      continue;\n    }\n    let didAddToExistingColumn = false;\n\n    for (const column of columns) {\n      const lastUnit = column[column.length - 1];\n      if (!unitsOverlap(unit, lastUnit, group.axisType, dt)) {\n        column.push(unit);\n        didAddToExistingColumn = true;\n        break;\n      }\n    }\n    if (!didAddToExistingColumn) {\n      columns.push([unit]);\n    }\n  }\n\n  const units: UnitWithLayoutParameters<T>[] = columns.flatMap(\n    (column, columnIndex) =>\n      column.map((unit) => {\n        return {\n          ...unit,\n          layout: {\n            column: columnIndex,\n            nColumns: 1,\n            totalColumns: columns.length,\n            unitGroup: group,\n          },\n        };\n      }),\n  );\n\n  return units.toSorted(sortByAge);\n}\n\nexport function preprocessUnits<T extends UnitLong = UnitLong>(\n  section: SectionInfo<T>,\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): ExtUnit[] {\n  /** Preprocess units to add overlapping units and columns. */\n  let units = section.units;\n\n  let tolerance = 0.001; // 1 kyr tolerance for age columns\n  if (axisType != ColumnAxisType.AGE) {\n    tolerance = 0.01; // 1cm tolerance for height/depth columns\n  }\n\n  const unitGroups = groupUnitsByMutualOverlap(units, tolerance, axisType);\n\n  const divisions: any[] = [];\n  // Serialize all groups' units to a single array\n  for (const group of unitGroups) {\n    divisions.push(...group.getUnits());\n  }\n\n  return divisions.map((d) =>\n    enhanceUnitWithClippingPosition(section, d, axisType),\n  );\n}\n\nexport function enhanceUnitWithClippingPosition(section, d, axisType) {\n  const [b_pos, t_pos] = getUnitHeightRange(d, axisType);\n  if (axisType == ColumnAxisType.AGE) {\n    if (b_pos > section.b_age) {\n      d.b_clip_pos = section.b_age;\n    }\n    if (t_pos < section.t_age) {\n      d.t_clip_pos = section.t_age;\n    }\n  }\n  if (axisType == ColumnAxisType.DEPTH) {\n    if (b_pos > section.b_pos) {\n      d.b_clip_pos = section.b_pos;\n    }\n    if (t_pos < section.t_pos) {\n      d.t_clip_pos = section.t_pos;\n    }\n  }\n  return d;\n}\n\nexport function groupUnitsIntoSectionsBySectionID<T extends UnitLong>(\n  units: T[],\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): SectionInfo<T>[] {\n  /** Group units into sections by section_id.\n   * This works for large-scale Macrostrat columns, where units are grouped by section_id.\n   * */\n  let groups = Array.from(group(units, (d) => d.section_id));\n  const unitComparator = createUnitSorter(axisType);\n\n  const groups1 = groups.map(([section_id, sectionUnits]) => {\n    const [b_age, t_age] = getSectionAgeRange(sectionUnits);\n    const [b_pos, t_pos] = getSectionPosRange(sectionUnits, axisType);\n\n    // sort units by position\n    sectionUnits.sort(unitComparator);\n    return { section_id, t_age, b_age, b_pos, t_pos, units: sectionUnits };\n  });\n  // Sort sections by increasing top age, then increasing bottom age.\n  // Sections have no relative ordinal position other than age...\n  const compareSections = createUnitSorter(axisType) as (\n    a: StratigraphicPackage,\n    b: StratigraphicPackage,\n  ) => number;\n  groups1.sort(compareSections);\n  return groups1;\n}\n\ninterface WorkingSection {\n  units: UnitLong[];\n  // Position or age\n  heightRange: [number, number];\n}\n\nexport function groupUnitsIntoSectionsByOverlap<T extends BaseUnit>(\n  units: T[],\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n  tolerance: number = dt,\n): SectionInfo<T>[] {\n  /** Group units into sections by overlap.\n   * This creates \"synthetic\" sections that correspond to packages bound by scale gaps.\n   * This is most useful in the height and depth domains, where gaps (e.g., missing core) are\n   * common.\n   * */\n  // Start with each unit as its own \"section\", and progressively merge...\n  const sectionList: WorkingSection[] = [];\n\n  const initialSections: WorkingSection[] = units.map((unit) => {\n    return {\n      units: [unit],\n      heightRange: getUnitHeightRange(unit, axisType),\n    };\n  });\n\n  const isOverlapping = (a: WorkingSection, b: WorkingSection) => {\n    const res = compareAgeRanges(a.heightRange, b.heightRange, tolerance);\n    return res !== AgeRangeRelationship.Disjoint;\n  };\n\n  const mergeSections = (a: WorkingSection, b: WorkingSection) => {\n    return {\n      units: [...a.units, ...b.units],\n      heightRange: mergeAgeRanges(\n        [a.heightRange, b.heightRange],\n        MergeMode.Outer,\n      ),\n    };\n  };\n\n  // Merge overlapping sections progressively until no more merges are possible\n  let finalSectionList = initialSections;\n\n  while (true) {\n    let merged = false;\n    const nextSections: WorkingSection[] = [];\n\n    for (const section of finalSectionList) {\n      if (nextSections.length === 0) {\n        nextSections.push(section);\n      } else {\n        const lastSection = nextSections[nextSections.length - 1];\n        if (isOverlapping(section, lastSection)) {\n          // Merge with the last section\n          nextSections[nextSections.length - 1] = mergeSections(\n            lastSection,\n            section,\n          );\n          merged = true;\n        } else {\n          nextSections.push(section);\n        }\n      }\n    }\n\n    finalSectionList = nextSections;\n\n    // Stop when no more merges occurred in this pass\n    if (!merged) {\n      break;\n    }\n  }\n\n  return finalSectionList.map((section, i) => {\n    const [b_age, t_age] = getSectionAgeRange(section.units);\n    const [b_pos, t_pos] = getSectionPosRange(section.units, axisType);\n    return {\n      // Negative section IDs are used to indicate that these are synthetic sections\n      section_id: -i,\n      t_age,\n      b_age,\n      t_pos,\n      b_pos,\n      units: section.units as T[],\n    };\n  });\n}\n\nexport function getSectionPosRange(\n  units: BaseUnit[],\n  axisType: ColumnAxisType,\n): [number, number] {\n  /** Get the overall position range of a set of units. */\n  const t_positions = units.map((d) => {\n    switch (axisType) {\n      case ColumnAxisType.AGE:\n        return d.t_age;\n      case ColumnAxisType.DEPTH:\n      case ColumnAxisType.HEIGHT:\n      case ColumnAxisType.ORDINAL:\n        return d.t_pos;\n      default:\n        throw new Error(`Unknown axis type: ${axisType}`);\n    }\n  });\n  const b_positions = units.map((d) => {\n    switch (axisType) {\n      case ColumnAxisType.AGE:\n        return d.b_age;\n      case ColumnAxisType.DEPTH:\n      case ColumnAxisType.HEIGHT:\n      case ColumnAxisType.ORDINAL:\n        return d.b_pos;\n      default:\n        throw new Error(`Unknown axis type: ${axisType}`);\n    }\n  });\n  if (axisType == ColumnAxisType.AGE || axisType == ColumnAxisType.DEPTH) {\n    return [Math.max(...b_positions), Math.min(...t_positions)];\n  } else {\n    return [Math.min(...b_positions), Math.max(...t_positions)];\n  }\n}\n\nexport function getSectionAgeRange(units: BaseUnit[]): [number, number] {\n  /** Get the overall age range of a set of units. */\n  return getSectionPosRange(units, ColumnAxisType.AGE);\n}\n\nexport function mergeOverlappingSections<T extends UnitLong>(\n  sections: SectionInfo<T>[],\n): SectionInfo<T>[] {\n  /** Columns can have sections that overlap in time. Here, we merge overlapping\n   * sections into a single section to correctly render gap-bound packages.\n   */\n  const [firstSection, ...rest] = sections;\n  const newSections = [firstSection];\n  for (const section of rest) {\n    const lastSection = newSections[newSections.length - 1];\n    if (\n      lastSection.b_age < section.t_age ||\n      lastSection.t_age > section.b_age\n    ) {\n      // No overlap, add the section as normal\n      newSections.push(section);\n      continue;\n    }\n\n    // Overlap, merge the sections\n    lastSection.section_id = [\n      ...ensureArray(lastSection.section_id),\n      ...ensureArray(section.section_id),\n    ];\n    lastSection.units.push(...section.units);\n    lastSection.b_age = Math.max(lastSection.b_age, section.b_age);\n    lastSection.t_age = Math.min(lastSection.t_age, section.t_age);\n  }\n  return newSections;\n}\n\nexport function preprocessSectionUnit(unit: UnitLong): UnitLong {\n  /** Preprocess a single unit for a 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Here, we merge overlapping\n   * sections into a single section to correctly render gap-bound packages.\n   */\n  const [firstSection, ...rest] = sections;\n  const newSections = [firstSection];\n  for (const section of rest) {\n    const lastSection = newSections[newSections.length - 1];\n    if (\n      lastSection.b_age < section.t_age ||\n      lastSection.t_age > section.b_age\n    ) {\n      // No overlap, add the section as normal\n      newSections.push(section);\n      continue;\n    }\n\n    // Overlap, merge the sections\n    lastSection.section_id = [\n      ...ensureArray(lastSection.section_id),\n      ...ensureArray(section.section_id),\n    ];\n    lastSection.units.push(...section.units);\n    lastSection.b_age = Math.max(lastSection.b_age, section.b_age);\n    lastSection.t_age = Math.min(lastSection.t_age, section.t_age);\n  }\n  return newSections;\n}\n\nexport function preprocessSectionUnit(unit: UnitLong): UnitLong {\n  /** Preprocess a single unit for a 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package/dist/prepare-units/helpers.js

@@ -22,7 +22,6 @@ class UnitGroup {
 }
 function groupUnitsByMutualOverlap(units, tolerance = dt, axisType = ColumnAxisType.AGE) {
   const sections = groupUnitsIntoSectionsByOverlap(units, axisType, tolerance);
-  console.log("Grouped sections", sections);
   return sections.map((d) => {
     return new UnitGroup(d.units, axisType);
   });