@macrostrat/column-views 3.4.2 → 3.5.1

package/dist/prepare-units/helpers.js

@@ -1,12 +1,14 @@
 import { group } from "d3-array";
 import { ColumnAxisType } from "@macrostrat/column-components";
 import { ensureRealFloat, getUnitHeightRange, ensureArray, createUnitSorter, unitsOverlap } from "./utils.js";
-import { compareAgeRanges, AgeRangeRelationship } from "@macrostrat/stratigraphy-utils";
+import { compareAgeRanges, AgeRangeRelationship, mergeAgeRanges, MergeMode } from "@macrostrat/stratigraphy-utils";
 const dt = 1e-3;
 class UnitGroup {
   units;
-  constructor(units) {
+  axisType;
+  constructor(units, axisType = ColumnAxisType.AGE) {
     this.units = units;
+    this.axisType = axisType;
   }
   get t_age() {
     return Math.min(...this.units.map((d) => d.t_age));
@@ -18,25 +20,28 @@ class UnitGroup {
     return assignColumnsToUnitsWithinOverlappingGroup(this);
   }
 }
-function groupUnitsByMutualOverlap(units, tolerance = dt) {
-  const sections = groupUnitsIntoSectionsByOverlap(
-    units,
-    ColumnAxisType.AGE,
-    tolerance
-  );
+function groupUnitsByMutualOverlap(units, tolerance = dt, axisType = ColumnAxisType.AGE) {
+  const sections = groupUnitsIntoSectionsByOverlap(units, axisType, tolerance);
+  console.log("Grouped sections", sections);
   return sections.map((d) => {
-    return new UnitGroup(d.units);
+    return new UnitGroup(d.units, axisType);
   });
 }
 const sortByAge = createUnitSorter(ColumnAxisType.AGE);
 function assignColumnsToUnitsWithinOverlappingGroup(group2) {
-  const sortedUnits = [...group2.units].sort((a, b) => b.b_age - a.b_age);
+  const sortedUnits = [...group2.units].sort(createUnitSorter(group2.axisType));
   const columns = [];
   for (const unit of sortedUnits) {
+    const colHint = unit.layoutHints?.column;
+    if (colHint != null) {
+      columns[colHint] ??= [];
+      columns[colHint].push(unit);
+      continue;
+    }
     let didAddToExistingColumn = false;
     for (const column of columns) {
       const lastUnit = column[column.length - 1];
-      if (!unitsOverlap(unit, lastUnit, ColumnAxisType.AGE, dt)) {
+      if (!unitsOverlap(unit, lastUnit, group2.axisType, dt)) {
         column.push(unit);
         didAddToExistingColumn = true;
         break;
@@ -46,13 +51,15 @@ function assignColumnsToUnitsWithinOverlappingGroup(group2) {
       columns.push([unit]);
     }
   }
+  console.log(columns);
   const units = columns.flatMap(
     (column, columnIndex) => column.map((unit) => {
       return {
         ...unit,
-        overlap: {
+        layout: {
           column: columnIndex,
-          nColumns: columns.length,
+          nColumns: 1,
+          totalColumns: columns.length,
           unitGroup: group2
         }
       };
@@ -66,7 +73,7 @@ function preprocessUnits(section, axisType = ColumnAxisType.AGE) {
   if (axisType != ColumnAxisType.AGE) {
     tolerance = 0.01;
   }
-  const unitGroups = groupUnitsByMutualOverlap(units, tolerance);
+  const unitGroups = groupUnitsByMutualOverlap(units, tolerance, axisType);
   const divisions = [];
   for (const group2 of unitGroups) {
     divisions.push(...group2.getUnits());
@@ -109,33 +116,48 @@ function groupUnitsIntoSectionsBySectionID(units, axisType = ColumnAxisType.AGE)
   return groups1;
 }
 function groupUnitsIntoSectionsByOverlap(units, axisType = ColumnAxisType.AGE, tolerance = dt) {
-  const sectionList = [];
-  for (const unit of units) {
-    const heightRange = getUnitHeightRange(unit, axisType);
-    let section = sectionList.find(
-      (s) => compareAgeRanges(heightRange, s.heightRange, tolerance) !== AgeRangeRelationship.Disjoint
-    );
-    if (section == null) {
-      sectionList.push({
-        heightRange,
-        units: [unit]
-      });
-    } else {
-      section.units.push(unit);
-      if (axisType == ColumnAxisType.DEPTH || axisType == ColumnAxisType.AGE) {
-        section.heightRange = [
-          Math.max(section.heightRange[0], heightRange[0]),
-          Math.min(section.heightRange[1], heightRange[1])
-        ];
+  const initialSections = units.map((unit) => {
+    return {
+      units: [unit],
+      heightRange: getUnitHeightRange(unit, axisType)
+    };
+  });
+  const isOverlapping = (a, b) => {
+    const res = compareAgeRanges(a.heightRange, b.heightRange, tolerance);
+    return res !== AgeRangeRelationship.Disjoint;
+  };
+  const mergeSections = (a, b) => {
+    return {
+      units: [...a.units, ...b.units],
+      heightRange: mergeAgeRanges(
+        [a.heightRange, b.heightRange],
+        MergeMode.Outer
+      )
+    };
+  };
+  let finalSectionList = initialSections;
+  while (true) {
+    let merged = false;
+    const nextSections = [];
+    for (const section of finalSectionList) {
+      if (nextSections.length === 0) {
+        nextSections.push(section);
       } else {
-        section.heightRange = [
-          Math.min(section.heightRange[0], heightRange[0]),
-          Math.max(section.heightRange[1], heightRange[1])
-        ];
+        const lastSection = nextSections[nextSections.length - 1];
+        if (isOverlapping(section, lastSection)) {
+          nextSections[nextSections.length - 1] = mergeSections(lastSection, section);
+          merged = true;
+        } else {
+          nextSections.push(section);
+        }
       }
     }
+    finalSectionList = nextSections;
+    if (!merged) {
+      break;
+    }
   }
-  return sectionList.map((section, i) => {
+  return finalSectionList.map((section, i) => {
     const [b_age, t_age] = getSectionAgeRange(section.units);
     const [b_pos, t_pos] = getSectionPosRange(section.units, axisType);
     return {

package/dist/prepare-units/helpers.js.map

@@ -1 +1 @@
-{"version":3,"file":"helpers.js","sources":["../../src/prepare-units/helpers.ts"],"sourcesContent":["import type { BaseUnit, UnitLong } from \"@macrostrat/api-types\";\nimport { group } from \"d3-array\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport {\n  createUnitSorter,\n  ensureArray,\n  ensureRealFloat,\n  getUnitHeightRange,\n  unitsOverlap,\n} from \"./utils\";\nimport {\n  AgeRangeRelationship,\n  compareAgeRanges,\n} from \"@macrostrat/stratigraphy-utils\";\nimport type { ExtUnit, SectionInfo, StratigraphicPackage } from \"./types\";\n\nconst dt = 0.001;\n\nexport type UnitWithDefinedOverlap<T extends BaseUnit> = T & {\n  overlap: UnitOverlapInfo<T>;\n};\n\ntype UnitOverlapInfo<T extends BaseUnit> = {\n  column: number;\n  nColumns: number;\n  unitGroup: UnitGroup<T>;\n};\n\nclass UnitGroup<T extends BaseUnit> implements StratigraphicPackage {\n  units: T[];\n\n  constructor(units: T[]) {\n    this.units = units;\n  }\n\n  get t_age(): number {\n    return Math.min(...this.units.map((d) => d.t_age));\n  }\n\n  get b_age(): number {\n    return Math.max(...this.units.map((d) => d.b_age));\n  }\n\n  getUnits(): UnitWithDefinedOverlap<T>[] {\n    return assignColumnsToUnitsWithinOverlappingGroup(this);\n  }\n}\n\nfunction groupUnitsByMutualOverlap<T extends BaseUnit>(\n  units: T[],\n  tolerance: number = dt,\n): UnitGroup<T>[] {\n  /** Group units within a section that have mutual overlap. */\n  const sections = groupUnitsIntoSectionsByOverlap(\n    units,\n    ColumnAxisType.AGE,\n    tolerance,\n  );\n  return sections.map((d) => {\n    return new UnitGroup(d.units);\n  });\n}\n\nconst sortByAge = createUnitSorter(ColumnAxisType.AGE);\n\nfunction assignColumnsToUnitsWithinOverlappingGroup<T extends BaseUnit>(\n  group: UnitGroup<T>,\n): UnitWithDefinedOverlap<T>[] {\n  /** A relatively naïve function to assign columns to units within a mutually overlapping group.\n   * This gets the number of columns that would be needed to accommodate the units in the group.\n   * It then assigns columns to units in the group based on the number of columns needed, with\n   * lower units further to the left.\n   */\n\n  const sortedUnits = [...group.units].sort((a, b) => b.b_age - a.b_age);\n\n  const columns: T[][] = [];\n\n  for (const unit of sortedUnits) {\n    // Find a column that is not already occupied by an overlapping unit\n    let didAddToExistingColumn = false;\n    for (const column of columns) {\n      const lastUnit = column[column.length - 1];\n      if (!unitsOverlap(unit, lastUnit, ColumnAxisType.AGE, dt)) {\n        column.push(unit);\n        didAddToExistingColumn = true;\n        break;\n      }\n    }\n    if (!didAddToExistingColumn) {\n      columns.push([unit]);\n    }\n  }\n\n  const units: UnitWithDefinedOverlap<T>[] = columns.flatMap(\n    (column, columnIndex) =>\n      column.map((unit) => {\n        return {\n          ...unit,\n          overlap: {\n            column: columnIndex,\n            nColumns: columns.length,\n            unitGroup: group,\n          },\n        };\n      }),\n  );\n\n  return units.toSorted(sortByAge);\n}\n\nexport function preprocessUnits<T extends UnitLong = UnitLong>(\n  section: SectionInfo<T>,\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): ExtUnit[] {\n  /** Preprocess units to add overlapping units and columns. */\n  let units = section.units;\n\n  let tolerance = 0.001; // 1 kyr tolerance for age columns\n  if (axisType != ColumnAxisType.AGE) {\n    tolerance = 0.01; // 1cm tolerance for height/depth columns\n  }\n\n  const unitGroups = groupUnitsByMutualOverlap(units, tolerance);\n\n  const divisions: any[] = [];\n  // Serialize all groups' units to a single array\n  for (const group of unitGroups) {\n    divisions.push(...group.getUnits());\n  }\n\n  return divisions.map((d) =>\n    enhanceUnitWithClippingPosition(section, d, axisType),\n  );\n}\n\nexport function enhanceUnitWithClippingPosition(section, d, axisType) {\n  const [b_pos, t_pos] = getUnitHeightRange(d, axisType);\n  if (axisType == ColumnAxisType.AGE) {\n    if (b_pos > section.b_age) {\n      d.b_clip_pos = section.b_age;\n    }\n    if (t_pos < section.t_age) {\n      d.t_clip_pos = section.t_age;\n    }\n  }\n  if (axisType == ColumnAxisType.DEPTH) {\n    if (b_pos > section.b_pos) {\n      d.b_clip_pos = section.b_pos;\n    }\n    if (t_pos < section.t_pos) {\n      d.t_clip_pos = section.t_pos;\n    }\n  }\n  return d;\n}\n\nexport function groupUnitsIntoSectionsBySectionID<T extends UnitLong>(\n  units: T[],\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): SectionInfo<T>[] {\n  /** Group units into sections by section_id.\n   * This works for large-scale Macrostrat columns, where units are grouped by section_id.\n   * */\n  let groups = Array.from(group(units, (d) => d.section_id));\n  const unitComparator = createUnitSorter(axisType);\n\n  const groups1 = groups.map(([section_id, sectionUnits]) => {\n    const [b_age, t_age] = getSectionAgeRange(sectionUnits);\n    const [b_pos, t_pos] = getSectionPosRange(sectionUnits, axisType);\n\n    // sort units by position\n    sectionUnits.sort(unitComparator);\n    return { section_id, t_age, b_age, b_pos, t_pos, units: sectionUnits };\n  });\n  // Sort sections by increasing top age, then increasing bottom age.\n  // Sections have no relative ordinal position other than age...\n  const compareSections = createUnitSorter(axisType) as (\n    a: StratigraphicPackage,\n    b: StratigraphicPackage,\n  ) => number;\n  groups1.sort(compareSections);\n  return groups1;\n}\n\ninterface WorkingSection {\n  units: UnitLong[];\n  // Position or age\n  heightRange?: [number, number];\n}\n\nexport function groupUnitsIntoSectionsByOverlap<T extends BaseUnit>(\n  units: T[],\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n  tolerance: number = dt,\n): SectionInfo<T>[] {\n  /** Group units into sections by overlap.\n   * This creates \"synthetic\" sections that correspond to packages bound by scale gaps.\n   * This is most useful in the height and depth domains, where gaps (e.g., missing core) are\n   * common.\n   * */\n  // Start with each unit as its own \"section\", and progressively merge...\n  const sectionList: WorkingSection[] = [];\n  for (const unit of units) {\n    // Check if the unit overlaps with any existing section\n    const heightRange = getUnitHeightRange(unit, axisType);\n    let section: WorkingSection | undefined = sectionList.find(\n      (s) =>\n        compareAgeRanges(heightRange, s.heightRange, tolerance) !==\n        AgeRangeRelationship.Disjoint,\n    );\n    if (section == null) {\n      // No overlap, create a new section\n      sectionList.push({\n        heightRange,\n        units: [unit],\n      });\n    } else {\n      // Overlap, merge the unit into the section\n      section.units.push(unit);\n      // Update the height range\n      if (axisType == ColumnAxisType.DEPTH || axisType == ColumnAxisType.AGE) {\n        section.heightRange = [\n          Math.max(section.heightRange[0], heightRange[0]),\n          Math.min(section.heightRange[1], heightRange[1]),\n        ];\n      } else {\n        section.heightRange = [\n          Math.min(section.heightRange[0], heightRange[0]),\n          Math.max(section.heightRange[1], heightRange[1]),\n        ];\n      }\n    }\n  }\n  // We should have a section for each unit, now we can convert to SectionInfo\n  // Ages have to be really actually ages, not heights\n\n  return sectionList.map((section, i) => {\n    const [b_age, t_age] = getSectionAgeRange(section.units);\n    const [b_pos, t_pos] = getSectionPosRange(section.units, axisType);\n    return {\n      // Negative section IDs are used to indicate that these are synthetic sections\n      section_id: -i,\n      t_age,\n      b_age,\n      t_pos,\n      b_pos,\n      units: section.units as T[],\n    };\n  });\n}\n\nexport function getSectionPosRange(\n  units: BaseUnit[],\n  axisType: ColumnAxisType,\n): [number, number] {\n  /** Get the overall position range of a set of units. */\n  const t_positions = units.map((d) => {\n    switch (axisType) {\n      case ColumnAxisType.AGE:\n        return d.t_age;\n      case ColumnAxisType.DEPTH:\n      case ColumnAxisType.HEIGHT:\n      case ColumnAxisType.ORDINAL:\n        return d.t_pos;\n      default:\n        throw new Error(`Unknown axis type: ${axisType}`);\n    }\n  });\n  const b_positions = units.map((d) => {\n    switch (axisType) {\n      case ColumnAxisType.AGE:\n        return d.b_age;\n      case ColumnAxisType.DEPTH:\n      case ColumnAxisType.HEIGHT:\n      case ColumnAxisType.ORDINAL:\n        return d.b_pos;\n      default:\n        throw new Error(`Unknown axis type: ${axisType}`);\n    }\n  });\n  if (axisType == ColumnAxisType.AGE || axisType == ColumnAxisType.DEPTH) {\n    return [Math.max(...b_positions), Math.min(...t_positions)];\n  } else {\n    return [Math.min(...b_positions), Math.max(...t_positions)];\n  }\n}\n\nexport function getSectionAgeRange(units: BaseUnit[]): [number, number] {\n  /** Get the overall age range of a set of units. */\n  return getSectionPosRange(units, ColumnAxisType.AGE);\n}\n\nexport function mergeOverlappingSections<T extends UnitLong>(\n  sections: SectionInfo<T>[],\n): SectionInfo<T>[] {\n  /** Columns can have sections that overlap in time. Here, we merge overlapping\n   * sections into a single section to correctly render gap-bound packages.\n   */\n  const [firstSection, ...rest] = sections;\n  const newSections = [firstSection];\n  for (const section of rest) {\n    const lastSection = newSections[newSections.length - 1];\n    if (\n      lastSection.b_age < section.t_age ||\n      lastSection.t_age > section.b_age\n    ) {\n      // No overlap, add the section as normal\n      newSections.push(section);\n      continue;\n    }\n\n    // Overlap, merge the sections\n    lastSection.section_id = [\n      ...ensureArray(lastSection.section_id),\n      ...ensureArray(section.section_id),\n    ];\n    lastSection.units.push(...section.units);\n    lastSection.b_age = Math.max(lastSection.b_age, section.b_age);\n    lastSection.t_age = Math.min(lastSection.t_age, section.t_age);\n  }\n  return newSections;\n}\n\nexport function preprocessSectionUnit(unit: UnitLong): UnitLong {\n  /** Preprocess a single unit for a \"section\" column type.\n   * This mostly handles vagaries of eODP-style columns.\n   * */\n\n  let b_pos = unit.b_pos;\n  let t_pos = unit.t_pos;\n\n  let unit_name = unit.unit_name;\n\n  // eODP columns sometimes have overlapping core sections, which are encoded in the name field\n  // Match eODP section names\n  const match = unit.unit_name.match(/^(\\d+(\\.\\d+)?)-(\\d+(\\.\\d+)?): (.+)/);\n\n  if (match) {\n    // These values should already be set if we've used the show_positions flag\n    t_pos ??= ensureRealFloat(match[1]);\n    b_pos ??= ensureRealFloat(match[3]);\n    unit_name = match[5];\n  }\n\n  return {\n    ...unit,\n    b_pos: ensureRealFloat(b_pos),\n    t_pos: ensureRealFloat(t_pos),\n    unit_name,\n  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+{"version":3,"file":"helpers.js","sources":["../../src/prepare-units/helpers.ts"],"sourcesContent":["import type { BaseUnit, UnitLong } from \"@macrostrat/api-types\";\nimport { group } from \"d3-array\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport {\n  createUnitSorter,\n  ensureArray,\n  ensureRealFloat,\n  getUnitHeightRange,\n  unitsOverlap,\n} from \"./utils\";\nimport {\n  AgeRangeRelationship,\n  compareAgeRanges,\n  mergeAgeRanges,\n  MergeMode,\n} from \"@macrostrat/stratigraphy-utils\";\nimport type { ExtUnit, SectionInfo, StratigraphicPackage } from \"./types\";\n\nconst dt = 0.001;\n\nexport type UnitWithLayoutParameters<T extends BaseUnit> = T & {\n  layout: UnitLayoutData<T>;\n};\n\nexport type UnitWithLayoutHints<T extends BaseUnit> = T & {\n  layoutHints?: UnitLayoutHints;\n};\n\ninterface UnitLayoutInfo {\n  column: number;\n  nColumns: number;\n}\n\ntype UnitLayoutHints = Partial<UnitLayoutInfo>;\n\ntype UnitLayoutData<T extends BaseUnit> = UnitLayoutInfo & {\n  totalColumns: number;\n  unitGroup: UnitGroup<T>;\n};\n\nclass UnitGroup<T extends BaseUnit> implements StratigraphicPackage {\n  units: T[];\n  axisType: ColumnAxisType;\n\n  constructor(units: T[], axisType: ColumnAxisType = ColumnAxisType.AGE) {\n    this.units = units;\n    this.axisType = axisType;\n  }\n\n  get t_age(): number {\n    return Math.min(...this.units.map((d) => d.t_age));\n  }\n\n  get b_age(): number {\n    return Math.max(...this.units.map((d) => d.b_age));\n  }\n\n  getUnits(): UnitWithLayoutParameters<T>[] {\n    return assignColumnsToUnitsWithinOverlappingGroup(this);\n  }\n}\n\nfunction groupUnitsByMutualOverlap<T extends BaseUnit>(\n  units: T[],\n  tolerance: number = dt,\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): UnitGroup<T>[] {\n  /** Group units within a section that have mutual overlap. */\n\n  const sections = groupUnitsIntoSectionsByOverlap(units, axisType, tolerance);\n\n  console.log(\"Grouped sections\", sections);\n\n  return sections.map((d) => {\n    return new UnitGroup(d.units, axisType);\n  });\n}\n\nconst sortByAge = createUnitSorter(ColumnAxisType.AGE);\n\nfunction assignColumnsToUnitsWithinOverlappingGroup<T extends BaseUnit>(\n  group: UnitGroup<UnitWithLayoutHints<T>>,\n): UnitWithLayoutParameters<T>[] {\n  /** A relatively naïve function to assign columns to units within a mutually overlapping group.\n   * This gets the number of columns that would be needed to accommodate the units in the group.\n   * It then assigns columns to units in the group based on the number of columns needed, with\n   * lower units further to the left.\n   */\n\n  const sortedUnits = [...group.units].sort(createUnitSorter(group.axisType));\n\n  const columns: T[][] = [];\n\n  let nColumns = 1;\n\n  for (const unit of sortedUnits) {\n    let startIndex = 0;\n    let endIndex = 0;\n    // Find a column that is not already occupied by an overlapping unit\n    const colHint = unit.layoutHints?.column;\n    if (colHint != null) {\n      columns[colHint] ??= [];\n      columns[colHint].push(unit);\n      continue;\n    }\n    let didAddToExistingColumn = false;\n\n    for (const column of columns) {\n      const lastUnit = column[column.length - 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Here, we merge overlapping\n   * sections into a single section to correctly render gap-bound packages.\n   */\n  const [firstSection, ...rest] = sections;\n  const newSections = [firstSection];\n  for (const section of rest) {\n    const lastSection = newSections[newSections.length - 1];\n    if (\n      lastSection.b_age < section.t_age ||\n      lastSection.t_age > section.b_age\n    ) {\n      // No overlap, add the section as normal\n      newSections.push(section);\n      continue;\n    }\n\n    // Overlap, merge the sections\n    lastSection.section_id = [\n      ...ensureArray(lastSection.section_id),\n      ...ensureArray(section.section_id),\n    ];\n    lastSection.units.push(...section.units);\n    lastSection.b_age = Math.max(lastSection.b_age, section.b_age);\n    lastSection.t_age = Math.min(lastSection.t_age, section.t_age);\n  }\n  return newSections;\n}\n\nexport function preprocessSectionUnit(unit: UnitLong): UnitLong {\n  /** Preprocess a single unit for a 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package/dist/prepare-units/index.cjs

@@ -97,6 +97,7 @@ function prepareColumnUnits(units, options) {
     sectionsWithScales,
     unconformityHeight
   );
+  console.log(sections2, "sections");
   const sectionsOut = sections2.map((section) => {
     return {
       ...section,

package/dist/prepare-units/index.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"index.cjs","sources":["../../src/prepare-units/index.ts"],"sourcesContent":["import {\n  getSectionAgeRange,\n  getSectionPosRange,\n  groupUnitsIntoSectionsByOverlap,\n  groupUnitsIntoSectionsBySectionID,\n  mergeOverlappingSections,\n  preprocessSectionUnit,\n  preprocessUnits,\n} from \"./helpers\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { useMemo } from \"react\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport {\n  collapseUnconformitiesByPixelHeight,\n  computeSectionHeights,\n  finalizeSectionHeights,\n  type CompositeColumnScale,\n} from \"./composite-scale\";\nimport {\n  agesOverlap,\n  MergeSectionsMode,\n  PrepareColumnOptions,\n  PreparedColumnData,\n  unitsOverlap,\n} from \"./utils\";\nimport { SectionInfo } from \"./types\";\n\nexport * from \"./utils\";\nexport * from \"./types\";\nexport { preprocessUnits };\nexport type { CompositeColumnScale };\n\nexport function usePreparedColumnUnits(\n  data: UnitLong[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** This function wraps and memoizes all preparation steps for converting\n   * an array of units from the /units route to a form ready for usage.\n   */\n  return useMemo(() => {\n    return prepareColumnUnits(data, options);\n  }, [data, ...Object.values(options)]);\n}\n\nexport function prepareColumnUnits(\n  units: UnitLong[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** Prepare units for rendering into Macrostrat columns */\n\n  let { t_age, b_age, t_pos, b_pos } = options;\n\n  const {\n    mergeSections = MergeSectionsMode.OVERLAPPING,\n    axisType,\n    unconformityHeight,\n    collapseSmallUnconformities = false,\n    hybridScale,\n    scale,\n  } = options;\n\n  let _totalHeight: number | null = null;\n\n  if (scale != null) {\n    // Set t_age and b_age based on scale domain if not already set\n    const domain = scale.domain();\n    if (axisType == ColumnAxisType.AGE) {\n      if (t_age == null) t_age = Math.min(...domain);\n      if (b_age == null) b_age = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_age) - scale(t_age));\n    } else {\n      if (t_pos == null) t_pos = Math.min(...domain);\n      if (b_pos == null) b_pos = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_pos) - scale(t_pos));\n    }\n  }\n\n  // Start by ensuring that ages and positions are numbers\n  // also set up some values for eODP-style columns\n  let units1 = units.map(preprocessSectionUnit);\n\n  /** Prototype filtering to age range */\n  units1 = units1.filter((d) => {\n    // Filter units by t_age and b_age, inclusive\n    if (axisType == ColumnAxisType.AGE) {\n      return agesOverlap(d, { t_age, b_age });\n    } else {\n      return unitsOverlap(d, { t_pos, b_pos } as any, axisType);\n    }\n  });\n\n  let mergeMode = mergeSections;\n  // if (axisType != ColumnAxisType.AGE) {\n  //   // For non-age columns, we always merge sections.\n  //   // This is because the \"groupUnitsIntoSections\" function is not well-defined\n  //   // for non-age columns.\n  //   mergeMode = MergeSectionsMode.ALL;\n  // }\n\n  let sections0: SectionInfo<UnitLong>[];\n  if (mergeMode == MergeSectionsMode.ALL) {\n    // For the \"merge sections\" mode, we need to create a single section\n    const [b_unit_pos, t_unit_pos] = getSectionPosRange(units1, axisType);\n    const [b_unit_age, t_unit_age] = getSectionAgeRange(units1);\n    sections0 = [\n      {\n        section_id: 0,\n        /**\n         * If ages limits are directly specified, use them to define the section bounds.\n         * */\n        t_pos: t_unit_pos,\n        b_pos: b_unit_pos,\n        t_age: t_unit_age,\n        b_age: b_unit_age,\n        units: units1,\n      },\n    ];\n  } else if (axisType == ColumnAxisType.AGE) {\n    sections0 = groupUnitsIntoSectionsBySectionID(units1, axisType);\n  } else {\n    sections0 = groupUnitsIntoSectionsByOverlap(units1, axisType);\n  }\n\n  // Limit sections to the range specified by t_age/b_age or t_pos/b_pos global options\n  for (let section of sections0) {\n    if (axisType == ColumnAxisType.AGE) {\n      section.t_age = Math.max(section.t_age, t_age ?? -Infinity);\n      section.b_age = Math.min(section.b_age, b_age ?? 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+{"version":3,"file":"index.cjs","sources":["../../src/prepare-units/index.ts"],"sourcesContent":["import {\n  getSectionAgeRange,\n  getSectionPosRange,\n  groupUnitsIntoSectionsByOverlap,\n  groupUnitsIntoSectionsBySectionID,\n  mergeOverlappingSections,\n  preprocessSectionUnit,\n  preprocessUnits,\n  UnitWithLayoutHints,\n} from \"./helpers\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { useMemo } from \"react\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport {\n  collapseUnconformitiesByPixelHeight,\n  computeSectionHeights,\n  finalizeSectionHeights,\n  type CompositeColumnScale,\n} from \"./composite-scale\";\nimport {\n  agesOverlap,\n  MergeSectionsMode,\n  PrepareColumnOptions,\n  PreparedColumnData,\n  unitsOverlap,\n} from \"./utils\";\nimport { SectionInfo } from \"./types\";\n\nexport * from \"./utils\";\nexport * from \"./types\";\nexport { preprocessUnits };\nexport type { CompositeColumnScale };\n\nexport function usePreparedColumnUnits(\n  data: UnitLong[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** This function wraps and memoizes all preparation steps for converting\n   * an array of units from the /units route to a form ready for usage.\n   */\n  return useMemo(() => {\n    return prepareColumnUnits(data, options);\n  }, [data, ...Object.values(options)]);\n}\n\nexport function prepareColumnUnits(\n  units: UnitWithLayoutHints<UnitLong>[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** Prepare units for rendering into Macrostrat columns */\n\n  let { t_age, b_age, t_pos, b_pos } = options;\n\n  const {\n    mergeSections = MergeSectionsMode.OVERLAPPING,\n    axisType,\n    unconformityHeight,\n    collapseSmallUnconformities = false,\n    hybridScale,\n    scale,\n  } = options;\n\n  let _totalHeight: number | null = null;\n\n  if (scale != null) {\n    // Set t_age and b_age based on scale domain if not already set\n    const domain = scale.domain();\n    if (axisType == ColumnAxisType.AGE) {\n      if (t_age == null) t_age = Math.min(...domain);\n      if (b_age == null) b_age = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_age) - scale(t_age));\n    } else {\n      if (t_pos == null) t_pos = Math.min(...domain);\n      if (b_pos == null) b_pos = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_pos) - scale(t_pos));\n    }\n  }\n\n  // Start by ensuring that ages and positions are numbers\n  // also set up some values for eODP-style columns\n  let units1 = units.map(preprocessSectionUnit);\n\n  /** Prototype filtering to age range */\n  units1 = units1.filter((d) => {\n    // Filter units by t_age and b_age, inclusive\n    if (axisType == ColumnAxisType.AGE) {\n      return agesOverlap(d, { t_age, b_age });\n    } else {\n      return unitsOverlap(d, { t_pos, b_pos } as any, axisType);\n    }\n  });\n\n  let mergeMode = mergeSections;\n  // if (axisType != ColumnAxisType.AGE) {\n  //   // For non-age columns, we always merge sections.\n  //   // This is because the \"groupUnitsIntoSections\" function is not well-defined\n  //   // for non-age columns.\n  //   mergeMode = MergeSectionsMode.ALL;\n  // }\n\n  let sections0: SectionInfo<UnitLong>[];\n  if (mergeMode == MergeSectionsMode.ALL) {\n    // For the \"merge sections\" mode, we need to create a single section\n    const [b_unit_pos, t_unit_pos] = getSectionPosRange(units1, axisType);\n    const [b_unit_age, t_unit_age] = getSectionAgeRange(units1);\n    sections0 = [\n      {\n        section_id: 0,\n        /**\n         * If ages limits are directly specified, use them to define the section bounds.\n         * */\n        t_pos: t_unit_pos,\n        b_pos: b_unit_pos,\n        t_age: t_unit_age,\n        b_age: b_unit_age,\n        units: units1,\n      },\n    ];\n  } else if (axisType == ColumnAxisType.AGE) {\n    sections0 = groupUnitsIntoSectionsBySectionID(units1, axisType);\n  } else {\n    sections0 = groupUnitsIntoSectionsByOverlap(units1, axisType);\n  }\n\n  // Limit sections to the range specified by t_age/b_age or t_pos/b_pos global options\n  for (let section of sections0) {\n    if (axisType == ColumnAxisType.AGE) {\n      section.t_age = Math.max(section.t_age, t_age ?? -Infinity);\n      section.b_age = Math.min(section.b_age, b_age ?? 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package/dist/prepare-units/index.d.ts

@@ -1,4 +1,4 @@
-import { preprocessUnits } from './helpers';
+import { preprocessUnits, UnitWithLayoutHints } from './helpers';
 import { UnitLong } from '@macrostrat/api-types';
 import { CompositeColumnScale } from './composite-scale';
 import { PrepareColumnOptions, PreparedColumnData } from './utils';
@@ -7,4 +7,4 @@ export * from './types';
 export { preprocessUnits };
 export type { CompositeColumnScale };
 export declare function usePreparedColumnUnits(data: UnitLong[], options: PrepareColumnOptions): PreparedColumnData;
-export declare function prepareColumnUnits(units: UnitLong[], options: PrepareColumnOptions): PreparedColumnData;
+export declare function prepareColumnUnits(units: UnitWithLayoutHints<UnitLong>[], options: PrepareColumnOptions): PreparedColumnData;

package/dist/prepare-units/index.js

@@ -96,6 +96,7 @@ function prepareColumnUnits(units, options) {
     sectionsWithScales,
     unconformityHeight
   );
+  console.log(sections2, "sections");
   const sectionsOut = sections2.map((section) => {
     return {
       ...section,

package/dist/prepare-units/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sources":["../../src/prepare-units/index.ts"],"sourcesContent":["import {\n  getSectionAgeRange,\n  getSectionPosRange,\n  groupUnitsIntoSectionsByOverlap,\n  groupUnitsIntoSectionsBySectionID,\n  mergeOverlappingSections,\n  preprocessSectionUnit,\n  preprocessUnits,\n} from \"./helpers\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { useMemo } from \"react\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport {\n  collapseUnconformitiesByPixelHeight,\n  computeSectionHeights,\n  finalizeSectionHeights,\n  type CompositeColumnScale,\n} from \"./composite-scale\";\nimport {\n  agesOverlap,\n  MergeSectionsMode,\n  PrepareColumnOptions,\n  PreparedColumnData,\n  unitsOverlap,\n} from \"./utils\";\nimport { SectionInfo } from \"./types\";\n\nexport * from \"./utils\";\nexport * from \"./types\";\nexport { preprocessUnits };\nexport type { CompositeColumnScale };\n\nexport function usePreparedColumnUnits(\n  data: UnitLong[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** This function wraps and memoizes all preparation steps for converting\n   * an array of units from the /units route to a form ready for usage.\n   */\n  return useMemo(() => {\n    return prepareColumnUnits(data, options);\n  }, [data, ...Object.values(options)]);\n}\n\nexport function prepareColumnUnits(\n  units: UnitLong[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** Prepare units for rendering into Macrostrat columns */\n\n  let { t_age, b_age, t_pos, b_pos } = options;\n\n  const {\n    mergeSections = MergeSectionsMode.OVERLAPPING,\n    axisType,\n    unconformityHeight,\n    collapseSmallUnconformities = false,\n    hybridScale,\n    scale,\n  } = options;\n\n  let _totalHeight: number | null = null;\n\n  if (scale != null) {\n    // Set t_age and b_age based on scale domain if not already set\n    const domain = scale.domain();\n    if (axisType == ColumnAxisType.AGE) {\n      if (t_age == null) t_age = Math.min(...domain);\n      if (b_age == null) b_age = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_age) - scale(t_age));\n    } else {\n      if (t_pos == null) t_pos = Math.min(...domain);\n      if (b_pos == null) b_pos = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_pos) - scale(t_pos));\n    }\n  }\n\n  // Start by ensuring that ages and positions are numbers\n  // also set up some values for eODP-style columns\n  let units1 = units.map(preprocessSectionUnit);\n\n  /** Prototype filtering to age range */\n  units1 = units1.filter((d) => {\n    // Filter units by t_age and b_age, inclusive\n    if (axisType == ColumnAxisType.AGE) {\n      return agesOverlap(d, { t_age, b_age });\n    } else {\n      return unitsOverlap(d, { t_pos, b_pos } as any, axisType);\n    }\n  });\n\n  let mergeMode = mergeSections;\n  // if (axisType != ColumnAxisType.AGE) {\n  //   // For non-age columns, we always merge sections.\n  //   // This is because the \"groupUnitsIntoSections\" function is not well-defined\n  //   // for non-age columns.\n  //   mergeMode = MergeSectionsMode.ALL;\n  // }\n\n  let sections0: SectionInfo<UnitLong>[];\n  if (mergeMode == MergeSectionsMode.ALL) {\n    // For the \"merge sections\" mode, we need to create a single section\n    const [b_unit_pos, t_unit_pos] = getSectionPosRange(units1, axisType);\n    const [b_unit_age, t_unit_age] = getSectionAgeRange(units1);\n    sections0 = [\n      {\n        section_id: 0,\n        /**\n         * If ages limits are directly specified, use them to define the section bounds.\n         * */\n        t_pos: t_unit_pos,\n        b_pos: b_unit_pos,\n        t_age: t_unit_age,\n        b_age: b_unit_age,\n        units: units1,\n      },\n    ];\n  } else if (axisType == ColumnAxisType.AGE) {\n    sections0 = groupUnitsIntoSectionsBySectionID(units1, axisType);\n  } else {\n    sections0 = groupUnitsIntoSectionsByOverlap(units1, axisType);\n  }\n\n  // Limit sections to the range specified by t_age/b_age or t_pos/b_pos global options\n  for (let section of sections0) {\n    if (axisType == ColumnAxisType.AGE) {\n      section.t_age = Math.max(section.t_age, t_age ?? -Infinity);\n      section.b_age = Math.min(section.b_age, b_age ?? 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+{"version":3,"file":"index.js","sources":["../../src/prepare-units/index.ts"],"sourcesContent":["import {\n  getSectionAgeRange,\n  getSectionPosRange,\n  groupUnitsIntoSectionsByOverlap,\n  groupUnitsIntoSectionsBySectionID,\n  mergeOverlappingSections,\n  preprocessSectionUnit,\n  preprocessUnits,\n  UnitWithLayoutHints,\n} from \"./helpers\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { useMemo } from \"react\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport {\n  collapseUnconformitiesByPixelHeight,\n  computeSectionHeights,\n  finalizeSectionHeights,\n  type CompositeColumnScale,\n} from \"./composite-scale\";\nimport {\n  agesOverlap,\n  MergeSectionsMode,\n  PrepareColumnOptions,\n  PreparedColumnData,\n  unitsOverlap,\n} from \"./utils\";\nimport { SectionInfo } from \"./types\";\n\nexport * from \"./utils\";\nexport * from \"./types\";\nexport { preprocessUnits };\nexport type { CompositeColumnScale };\n\nexport function usePreparedColumnUnits(\n  data: UnitLong[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** This function wraps and memoizes all preparation steps for converting\n   * an array of units from the /units route to a form ready for usage.\n   */\n  return useMemo(() => {\n    return prepareColumnUnits(data, options);\n  }, [data, ...Object.values(options)]);\n}\n\nexport function prepareColumnUnits(\n  units: UnitWithLayoutHints<UnitLong>[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** Prepare units for rendering into Macrostrat columns */\n\n  let { t_age, b_age, t_pos, b_pos } = options;\n\n  const {\n    mergeSections = MergeSectionsMode.OVERLAPPING,\n    axisType,\n    unconformityHeight,\n    collapseSmallUnconformities = false,\n    hybridScale,\n    scale,\n  } = options;\n\n  let _totalHeight: number | null = null;\n\n  if (scale != null) {\n    // Set t_age and b_age based on scale domain if not already set\n    const domain = scale.domain();\n    if (axisType == ColumnAxisType.AGE) {\n      if (t_age == null) t_age = Math.min(...domain);\n      if (b_age == null) b_age = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_age) - scale(t_age));\n    } else {\n      if (t_pos == null) t_pos = Math.min(...domain);\n      if (b_pos == null) b_pos = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_pos) - scale(t_pos));\n    }\n  }\n\n  // Start by ensuring that ages and positions are numbers\n  // also set up some values for eODP-style columns\n  let units1 = units.map(preprocessSectionUnit);\n\n  /** Prototype filtering to age range */\n  units1 = units1.filter((d) => {\n    // Filter units by t_age and b_age, inclusive\n    if (axisType == ColumnAxisType.AGE) {\n      return agesOverlap(d, { t_age, b_age });\n    } else {\n      return unitsOverlap(d, { t_pos, b_pos } as any, axisType);\n    }\n  });\n\n  let mergeMode = mergeSections;\n  // if (axisType != ColumnAxisType.AGE) {\n  //   // For non-age columns, we always merge sections.\n  //   // This is because the \"groupUnitsIntoSections\" function is not well-defined\n  //   // for non-age columns.\n  //   mergeMode = MergeSectionsMode.ALL;\n  // }\n\n  let sections0: SectionInfo<UnitLong>[];\n  if (mergeMode == MergeSectionsMode.ALL) {\n    // For the \"merge sections\" mode, we need to create a single section\n    const [b_unit_pos, t_unit_pos] = getSectionPosRange(units1, axisType);\n    const [b_unit_age, t_unit_age] = getSectionAgeRange(units1);\n    sections0 = [\n      {\n        section_id: 0,\n        /**\n         * If ages limits are directly specified, use them to define the section bounds.\n         * */\n        t_pos: t_unit_pos,\n        b_pos: b_unit_pos,\n        t_age: t_unit_age,\n        b_age: b_unit_age,\n        units: units1,\n      },\n    ];\n  } else if (axisType == ColumnAxisType.AGE) {\n    sections0 = groupUnitsIntoSectionsBySectionID(units1, axisType);\n  } else {\n    sections0 = groupUnitsIntoSectionsByOverlap(units1, axisType);\n  }\n\n  // Limit sections to the range specified by t_age/b_age or t_pos/b_pos global options\n  for (let section of sections0) {\n    if (axisType == ColumnAxisType.AGE) {\n      section.t_age = Math.max(section.t_age, t_age ?? -Infinity);\n      section.b_age = Math.min(section.b_age, b_age ?? Infinity);\n    } else if (axisType == ColumnAxisType.DEPTH) {\n      section.t_pos = Math.max(section.t_pos, t_pos ?? -Infinity);\n      section.b_pos = Math.min(section.b_pos, b_pos ?? Infinity);\n    } else if (axisType == ColumnAxisType.HEIGHT) {\n      section.t_pos = Math.max(section.t_pos, t_pos ?? -Infinity);\n      section.b_pos = Math.min(section.b_pos, b_pos ?? Infinity);\n    }\n  }\n\n  /** Merging overlapping sections really only makes sense for age/height/depth\n   * columns. Ordinal columns are numbered by section so merging them\n   * results in collisions.\n   */\n  let sections = sections0;\n  if (\n    mergeSections == MergeSectionsMode.OVERLAPPING &&\n    axisType == ColumnAxisType.AGE\n  ) {\n    sections = mergeOverlappingSections(sections);\n  }\n  // Filter out undefined sections just in case\n  sections = sections.filter((d) => d != null);\n\n  // SCALES\n\n  /* Compute pixel scales etc. for sections\n   * We need to do this now to determine which unconformities\n   * are small enough to collapse.\n   */\n  let sectionsWithScales = computeSectionHeights(sections, options);\n\n  if (collapseSmallUnconformities && hybridScale == null) {\n    // Collapse small unconformities in pixel height space\n    // TODO: this doesn't seem to work properly for non-age columns?\n    let threshold = unconformityHeight ?? 30;\n    if (typeof collapseSmallUnconformities == \"number\") {\n      threshold = collapseSmallUnconformities;\n    }\n\n    sectionsWithScales = collapseUnconformitiesByPixelHeight(\n      sectionsWithScales,\n      threshold,\n      options,\n    );\n  }\n\n  /** Prepare section scale information using groups.\n   * Total height is computed from section scales.\n   * */\n  let { totalHeight, sections: sections2 } = finalizeSectionHeights(\n    sectionsWithScales,\n    unconformityHeight,\n  );\n\n  /** For each section, find units that are overlapping.\n   * We do this after merging sections so that we can\n   * handle cases where there are overlapping units across sections\n   * */\n  console.log(sections2, \"sections\");\n\n  const sectionsOut = sections2.map((section) => {\n    return {\n      ...section,\n      units: preprocessUnits(section, axisType),\n    };\n  });\n\n  /** Reconstitute the units so that they are sorted by section and properly enhanced.\n   * This is mostly important so that unit keyboard navigation\n   * predictably selects adjacent units.\n   */\n  const units2 = sectionsOut.reduce((acc, group) => {\n    const { units } = group;\n    for (const unit of units) {\n      acc.push(unit);\n    }\n    return acc;\n  }, []);\n\n  return {\n    units: units2,\n    totalHeight: _totalHeight ?? totalHeight,\n    sections: sectionsOut,\n  };\n}\n"],"names":["units"],"mappings":";;;;;;AAiCO,SAAS,uBACd,MACA,SACoB;AAIpB,SAAO,QAAQ,MAAM;AACnB,WAAO,mBAAmB,MAAM,OAAO;AAAA,EACzC,GAAG,CAAC,MAAM,GAAG,OAAO,OAAO,OAAO,CAAC,CAAC;AACtC;AAEO,SAAS,mBACd,OACA,SACoB;AAGpB,MAAI,EAAE,OAAO,OAAO,OAAO,UAAU;AAErC,QAAM;AAAA,IACJ,gBAAgB,kBAAkB;AAAA,IAClC;AAAA,IACA;AAAA,IACA,8BAA8B;AAAA,IAC9B;AAAA,IACA;AAAA,EAAA,IACE;AAEJ,MAAI,eAA8B;AAElC,MAAI,SAAS,MAAM;AAEjB,UAAM,SAAS,MAAM,OAAA;AACrB,QAAI,YAAY,eAAe,KAAK;AAClC,UAAI,SAAS,KAAM,SAAQ,KAAK,IAAI,GAAG,MAAM;AAC7C,UAAI,SAAS,KAAM,SAAQ,KAAK,IAAI,GAAG,MAAM;AAC7C,qBAAe,KAAK,IAAI,MAAM,KAAK,IAAI,MAAM,KAAK,CAAC;AAAA,IACrD,OAAO;AACL,UAAI,SAAS,KAAM,SAAQ,KAAK,IAAI,GAAG,MAAM;AAC7C,UAAI,SAAS,KAAM,SAAQ,KAAK,IAAI,GAAG,MAAM;AAC7C,qBAAe,KAAK,IAAI,MAAM,KAAK,IAAI,MAAM,KAAK,CAAC;AAAA,IACrD;AAAA,EACF;AAIA,MAAI,SAAS,MAAM,IAAI,qBAAqB;AAG5C,WAAS,OAAO,OAAO,CAAC,MAAM;AAE5B,QAAI,YAAY,eAAe,KAAK;AAClC,aAAO,YAAY,GAAG,EAAE,OAAO,OAAO;AAAA,IACxC,OAAO;AACL,aAAO,aAAa,GAAG,EAAE,OAAO,MAAA,GAAgB,QAAQ;AAAA,IAC1D;AAAA,EACF,CAAC;AAED,MAAI,YAAY;AAQhB,MAAI;AACJ,MAAI,aAAa,kBAAkB,KAAK;AAEtC,UAAM,CAAC,YAAY,UAAU,IAAI,mBAAmB,QAAQ,QAAQ;AACpE,UAAM,CAAC,YAAY,UAAU,IAAI,mBAAmB,MAAM;AAC1D,gBAAY;AAAA,MACV;AAAA,QACE,YAAY;AAAA;AAAA;AAAA;AAAA,QAIZ,OAAO;AAAA,QACP,OAAO;AAAA,QACP,OAAO;AAAA,QACP,OAAO;AAAA,QACP,OAAO;AAAA,MAAA;AAAA,IACT;AAAA,EAEJ,WAAW,YAAY,eAAe,KAAK;AACzC,gBAAY,kCAAkC,QAAQ,QAAQ;AAAA,EAChE,OAAO;AACL,gBAAY,gCAAgC,QAAQ,QAAQ;AAAA,EAC9D;AAGA,WAAS,WAAW,WAAW;AAC7B,QAAI,YAAY,eAAe,KAAK;AAClC,cAAQ,QAAQ,KAAK,IAAI,QAAQ,OAAO,SAAS,SAAS;AAC1D,cAAQ,QAAQ,KAAK,IAAI,QAAQ,OAAO,SAAS,QAAQ;AAAA,IAC3D,WAAW,YAAY,eAAe,OAAO;AAC3C,cAAQ,QAAQ,KAAK,IAAI,QAAQ,OAAO,SAAS,SAAS;AAC1D,cAAQ,QAAQ,KAAK,IAAI,QAAQ,OAAO,SAAS,QAAQ;AAAA,IAC3D,WAAW,YAAY,eAAe,QAAQ;AAC5C,cAAQ,QAAQ,KAAK,IAAI,QAAQ,OAAO,SAAS,SAAS;AAC1D,cAAQ,QAAQ,KAAK,IAAI,QAAQ,OAAO,SAAS,QAAQ;AAAA,IAC3D;AAAA,EACF;AAMA,MAAI,WAAW;AACf,MACE,iBAAiB,kBAAkB,eACnC,YAAY,eAAe,KAC3B;AACA,eAAW,yBAAyB,QAAQ;AAAA,EAC9C;AAEA,aAAW,SAAS,OAAO,CAAC,MAAM,KAAK,IAAI;AAQ3C,MAAI,qBAAqB,sBAAsB,UAAU,OAAO;AAEhE,MAAI,+BAA+B,eAAe,MAAM;AAGtD,QAAI,YAAY,sBAAsB;AACtC,QAAI,OAAO,+BAA+B,UAAU;AAClD,kBAAY;AAAA,IACd;AAEA,yBAAqB;AAAA,MACnB;AAAA,MACA;AAAA,MACA;AAAA,IAAA;AAAA,EAEJ;AAKA,MAAI,EAAE,aAAa,UAAU,UAAA,IAAc;AAAA,IACzC;AAAA,IACA;AAAA,EAAA;AAOF,UAAQ,IAAI,WAAW,UAAU;AAEjC,QAAM,cAAc,UAAU,IAAI,CAAC,YAAY;AAC7C,WAAO;AAAA,MACL,GAAG;AAAA,MACH,OAAO,gBAAgB,SAAS,QAAQ;AAAA,IAAA;AAAA,EAE5C,CAAC;AAMD,QAAM,SAAS,YAAY,OAAO,CAAC,KAAK,UAAU;AAChD,UAAM,EAAE,OAAAA,OAAAA,IAAU;AAClB,eAAW,QAAQA,QAAO;AACxB,UAAI,KAAK,IAAI;AAAA,IACf;AACA,WAAO;AAAA,EACT,GAAG,CAAA,CAAE;AAEL,SAAO;AAAA,IACL,OAAO;AAAA,IACP,aAAa,gBAAgB;AAAA,IAC7B,UAAU;AAAA,EAAA;AAEd;"}

package/dist/unit-details/panel.cjs

@@ -58,7 +58,7 @@ function UnitDetailsPanel({
         key: "json-view-toggle",
         className: classNames__default.default("json-view-toggle", { enabled: setShowJSON }),
         onClick(evt) {
-          setShowJSON(!showJSON);
+          setShowJSON(!_showJSON);
           evt.stopPropagation();
         }
       }),

package/dist/unit-details/panel.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"panel.cjs","sources":["../../src/unit-details/panel.ts"],"sourcesContent":["import { JSONView } from \"@macrostrat/ui-components\";\nimport { Button, ButtonGroup } from \"@blueprintjs/core\";\nimport { ReactNode, useMemo, useState } from \"react\";\nimport {\n  DataField,\n  EnvironmentsList,\n  ItemList,\n  LithologyList,\n  LithologyTagFeature,\n  MacrostratInteractionManager,\n  MacrostratInteractionProvider,\n  MacrostratItemIdentifier,\n  Parenthetical,\n  useInteractionManager,\n  Value,\n} from \"@macrostrat/data-components\";\nimport { useColumnUnitsMap } from \"../data-provider\";\nimport {\n  useMacrostratColumnInfo,\n  useMacrostratData,\n  useMacrostratDefs,\n} from \"@macrostrat/data-provider\";\nimport type {\n  Environment,\n  EnvironmentIdentifier,\n  Interval,\n  Lithology,\n  UnitLong,\n  UnitLongFull,\n} from \"@macrostrat/api-types\";\nimport { defaultNameFunction } from \"../units/names\";\nimport classNames from \"classnames\";\nimport { AgeField, Duration, IntervalProportions } from \"./age-range\";\nimport { formatRange, formatSignificance } from \"./utils.ts\";\nimport h from \"./panel.module.sass\";\nimport { StratNameField } from \"./strat-names.ts\";\nimport { Identifier, UnitIdentifier, UnitInfo } from \"./identifiers.ts\";\nimport { LithologyIdentifier } from \"@macrostrat/api-types/src/lithologies\";\n\nexport interface UnitDetailsPanelProps {\n  unit: any;\n  onClose?: any;\n  className?: string;\n  actions?: ReactNode;\n  hiddenActions?: ReactNode;\n  features?: Set<UnitDetailsFeature>;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  onSelectUnit?: (unitID: number) => void;\n  onClickItem?: MacrostratItemClickHandler;\n  interactionManager?: MacrostratInteractionManager;\n  showJSON?: boolean;\n}\n\nexport function UnitDetailsPanel({\n  unit,\n  onClose,\n  className,\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n    UnitDetailsFeature.JSONToggle,\n    UnitDetailsFeature.DepthRange,\n  ]),\n  lithologyFeatures,\n  actions,\n  hiddenActions = null,\n  onSelectUnit,\n  onClickItem,\n  showJSON,\n}: UnitDetailsPanelProps) {\n  const [_showJSON, setShowJSON] = useState(false);\n\n  let content: ReactNode = null;\n  if (showJSON ?? _showJSON) {\n    content = h(JSONView, { data: unit, showRoot: false });\n  } else {\n    content = h(UnitDetailsContent, {\n      unit,\n      features,\n      lithologyFeatures,\n      onClickItem,\n    });\n  }\n\n  let title = defaultNameFunction(unit);\n\n  if (features.has(UnitDetailsFeature.JSONToggle)) {\n    hiddenActions = h([\n      h(Button, {\n        icon: \"code\",\n        small: true,\n        minimal: true,\n        key: \"json-view-toggle\",\n        className: classNames(\"json-view-toggle\", { enabled: setShowJSON }),\n        onClick(evt) {\n          setShowJSON(!showJSON);\n          evt.stopPropagation();\n        },\n      }),\n      hiddenActions,\n    ]);\n  }\n\n  const main = h(\"div.unit-details-panel\", { className }, [\n    h(LegendPanelHeader, {\n      onClose,\n      title,\n      id: unit.unit_id,\n      actions,\n      hiddenActions,\n    }),\n    h(\"div.unit-details-content-holder\", content),\n  ]);\n\n  /** Handle unit selection clicks */\n  const clickHandlerForItem = useMemo(() => {\n    if (onSelectUnit == null && onClickItem == null) return null;\n    return (item: MacrostratItemIdentifier) => {\n      if (\"unit_id\" in item && !(\"col_id\" in item)) {\n        // We are selecting a unit within the column\n        return (event: MouseEvent) => {\n          if (onSelectUnit != null) {\n            onSelectUnit(item.unit_id);\n          } else if (onClickItem != null) {\n            console.warn(\n              \"Unit selection: onClickItem is defined but onSelectUnit is not; ignoring click\",\n            );\n          }\n          // Don't allow event to propagate further (e.g., to open a link)\n          event.preventDefault();\n        };\n      }\n      return undefined;\n    };\n  }, [onSelectUnit, onClickItem]);\n\n  if (clickHandlerForItem != null) {\n    // We wrap this in a MacrostratInteractionManager to handle unit selection\n    return h(\n      MacrostratInteractionProvider,\n      {\n        clickHandlerForItem,\n        inherit: true,\n      },\n      main,\n    );\n  }\n\n  return main;\n}\n\nexport function LegendPanelHeader({\n  title,\n  id,\n  onClose,\n  actions = null,\n  hiddenActions,\n}: {\n  title?: string | null;\n  id?: number | null;\n  onClose?: () => void;\n  actions?: ReactNode | null;\n  hiddenActions?: ReactNode | null;\n}) {\n  return h(\"header.legend-panel-header\", [\n    h(\"div.title-container\", [\n      h.if(title != null)(\"h3\", title),\n      h.if(hiddenActions != null)(\n        \"span.hidden-actions-container\",\n        h(\"div.hidden-actions\", hiddenActions),\n      ),\n    ]),\n    h(\"div.spacer\"),\n    h.if(id != null)(\"code.unit-id\", id),\n    h.if(actions != null)(ButtonGroup, { minimal: true }, actions),\n    h.if(onClose != null)(Button, {\n      icon: \"cross\",\n      minimal: true,\n      small: true,\n      onClick() {\n        onClose?.();\n      },\n    }),\n  ]);\n}\n\nexport enum UnitDetailsFeature {\n  AdjacentUnits = \"adjacent-units\",\n  Color = \"color\",\n  OutcropType = \"outcrop-type\",\n  JSONToggle = \"json-toggle\",\n  DepthRange = \"depth-range\",\n  ColumnName = \"column-name\",\n}\n\nexport type MacrostratItemClickHandler = (\n  event: MouseEvent,\n  item:\n    | Lithology\n    | Environment\n    | UnitLong\n    | Interval\n    | { strat_name_id: number },\n) => void;\n\nfunction UnitDetailsContent({\n  unit,\n  lithologyFeatures = new Set([\n    LithologyTagFeature.Proportion,\n    LithologyTagFeature.Attributes,\n  ]),\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n  ]),\n  onClickItem,\n  getItemHref,\n}: {\n  unit: UnitLong;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  features?: Set<UnitDetailsFeature>;\n  onClickItem?: MacrostratItemClickHandler;\n  getItemHref?: (item: Lithology | Environment | UnitLong) => string | null;\n}) {\n  const lithMap = useMacrostratDefs(\"lithologies\");\n  const envMap = useMacrostratDefs(\"environments\");\n\n  const environments = enhanceEnvironments(unit.environ, envMap);\n  const lithologies = enhanceLithologies(unit.lith ?? [], lithMap);\n\n  let outcropField: ReactNode = null;\n  if (features.has(UnitDetailsFeature.OutcropType)) {\n    // Determine outcrop type\n    let outcrop = unit.outcrop;\n    if (outcrop == \"both\") {\n      outcrop = \"surface and subsurface\";\n    }\n    outcropField = h(DataField, {\n      label: \"Outcrop\",\n      value: outcrop,\n    });\n  }\n\n  let thicknessOrHeightRange: ReactNode = null;\n  const [thickness, thicknessUnit] = getThickness(unit);\n  // Proxy for actual heights in t_pos and b_pos\n  if (\n    features.has(UnitDetailsFeature.DepthRange) &&\n    unit.t_pos != null &&\n    unit.b_pos != null &&\n    unit.min_thick == unit.max_thick && // We have an actual fixed height\n    unit.min_thick != 0 // Not a zero thickness\n  ) {\n    const label = unit.t_pos < unit.b_pos ? \"Depth\" : \"Height\";\n    const u1 = \"m\";\n\n    thicknessOrHeightRange = h(DataField, {\n      unit: u1,\n      label,\n      value: formatRange(unit.b_pos, unit.t_pos),\n      children: h(\n        Parenthetical,\n        h(Value, { value: thickness, unit: thicknessUnit }),\n      ),\n    });\n  }\n  thicknessOrHeightRange ??= h(DataField, {\n    label: \"Thickness\",\n    value: thickness,\n    unit: thicknessUnit,\n  });\n\n  /** We are trying to move away from passing the \"color\" parameter in the API */\n  let colorSwatch: ReactNode = null;\n  if (\"color\" in unit && features.has(UnitDetailsFeature.Color)) {\n    const unit1 = unit as UnitLongFull;\n    colorSwatch = h(\"div.color-swatch\", {\n      style: { backgroundColor: unit1.color },\n    });\n  }\n\n  return h(\"div.unit-details-content\", [\n    h.if(features.has(UnitDetailsFeature.ColumnName))(ColumnNameField, {\n      col_id: unit.col_id,\n    }),\n    thicknessOrHeightRange,\n    h.if(lithologies != null)(LithologyList, {\n      label: \"Lithology\",\n      lithologies: lithologies ?? [],\n      features: lithologyFeatures,\n    }),\n    h(AgeField, { unit }, [\n      h(Parenthetical, h(Duration, { value: unit.b_age - unit.t_age })),\n      h(IntervalProportions, {\n        unit,\n        onClickItem,\n      }),\n    ]),\n    h.if(environments != null)(EnvironmentsList, {\n      environments,\n    }),\n    h.if(unit.strat_name_id != null)(StratNameField, {\n      strat_name_id: unit.strat_name_id,\n    }),\n    outcropField,\n    h.if(features.has(UnitDetailsFeature.AdjacentUnits))([\n      h.if(unit.units_above != null)(\n        DataField,\n        { label: \"Above\" },\n        h(UnitIDList, {\n          units: unit.units_above,\n          showNames: true,\n        }),\n      ),\n      h.if(unit.units_below != null)(\n        DataField,\n        { label: \"Below\" },\n        h(UnitIDList, {\n          units: unit.units_below,\n          showNames: true,\n        }),\n      ),\n    ]),\n    colorSwatch,\n    h(ReferencesField, { refs: unit.refs, inline: true 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unit.max_thick ?? unit.min_thick ?? 0;\n  let _unit = \"m\";\n\n  if (minThickness == 0 && maxThickness == 0) {\n    return [\"Unknown\", null];\n  }\n\n  if (minThickness < 0.8 && maxThickness < 1.2) {\n    // Convert to cm\n    minThickness = minThickness * 100;\n    maxThickness = maxThickness * 100;\n    _unit = \"cm\";\n  } else if (minThickness > 800 && maxThickness > 1200) {\n    // Convert to km\n    minThickness = minThickness / 1000;\n    maxThickness = maxThickness / 1000;\n    _unit = \"km\";\n  }\n\n  if (minThickness == maxThickness) {\n    return [formatSignificance(minThickness), _unit];\n  }\n\n  return [formatRange(minThickness, maxThickness), _unit];\n}\n\nexport function ThicknessField({ unit, label = \"Thickness\" }) {\n  const [value, thicknessUnit] = getThickness(unit);\n  return h(DataField, {\n    label,\n    value,\n    unit: thicknessUnit,\n  });\n}\n\nfunction BibInfo({ refs }) {\n  const refData = useMacrostratData(\"refs\", refs);\n\n  if (refData == null 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+{"version":3,"file":"panel.cjs","sources":["../../src/unit-details/panel.ts"],"sourcesContent":["import { JSONView } from \"@macrostrat/ui-components\";\nimport { Button, ButtonGroup } from \"@blueprintjs/core\";\nimport { ReactNode, useMemo, useState } from \"react\";\nimport {\n  DataField,\n  EnvironmentsList,\n  ItemList,\n  LithologyList,\n  LithologyTagFeature,\n  MacrostratInteractionManager,\n  MacrostratInteractionProvider,\n  MacrostratItemIdentifier,\n  Parenthetical,\n  useInteractionManager,\n  Value,\n} from \"@macrostrat/data-components\";\nimport { useColumnUnitsMap } from \"../data-provider\";\nimport {\n  useMacrostratColumnInfo,\n  useMacrostratData,\n  useMacrostratDefs,\n} from \"@macrostrat/data-provider\";\nimport type {\n  Environment,\n  EnvironmentIdentifier,\n  Interval,\n  Lithology,\n  UnitLong,\n  UnitLongFull,\n} from \"@macrostrat/api-types\";\nimport { defaultNameFunction } from \"../units/names\";\nimport classNames from \"classnames\";\nimport { AgeField, Duration, IntervalProportions } from \"./age-range\";\nimport { formatRange, formatSignificance } from \"./utils.ts\";\nimport h from \"./panel.module.sass\";\nimport { StratNameField } from \"./strat-names.ts\";\nimport { Identifier, UnitIdentifier, UnitInfo } from \"./identifiers.ts\";\nimport { LithologyIdentifier } from \"@macrostrat/api-types/src/lithologies\";\n\nexport interface UnitDetailsPanelProps {\n  unit: any;\n  onClose?: any;\n  className?: string;\n  actions?: ReactNode;\n  hiddenActions?: ReactNode;\n  features?: Set<UnitDetailsFeature>;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  onSelectUnit?: (unitID: number) => void;\n  onClickItem?: MacrostratItemClickHandler;\n  interactionManager?: MacrostratInteractionManager;\n  showJSON?: boolean;\n}\n\nexport function UnitDetailsPanel({\n  unit,\n  onClose,\n  className,\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n    UnitDetailsFeature.JSONToggle,\n    UnitDetailsFeature.DepthRange,\n  ]),\n  lithologyFeatures,\n  actions,\n  hiddenActions = null,\n  onSelectUnit,\n  onClickItem,\n  showJSON,\n}: UnitDetailsPanelProps) {\n  const [_showJSON, setShowJSON] = useState(false);\n\n  let content: ReactNode = null;\n  if (showJSON ?? _showJSON) {\n    content = h(JSONView, { data: unit, showRoot: false });\n  } else {\n    content = h(UnitDetailsContent, {\n      unit,\n      features,\n      lithologyFeatures,\n      onClickItem,\n    });\n  }\n\n  let title = defaultNameFunction(unit);\n\n  if (features.has(UnitDetailsFeature.JSONToggle)) {\n    hiddenActions = h([\n      h(Button, {\n        icon: \"code\",\n        small: true,\n        minimal: true,\n        key: \"json-view-toggle\",\n        className: classNames(\"json-view-toggle\", { enabled: setShowJSON }),\n        onClick(evt) {\n          setShowJSON(!_showJSON);\n          evt.stopPropagation();\n        },\n      }),\n      hiddenActions,\n    ]);\n  }\n\n  const main = h(\"div.unit-details-panel\", { className }, [\n    h(LegendPanelHeader, {\n      onClose,\n      title,\n      id: unit.unit_id,\n      actions,\n      hiddenActions,\n    }),\n    h(\"div.unit-details-content-holder\", content),\n  ]);\n\n  /** Handle unit selection clicks */\n  const clickHandlerForItem = useMemo(() => {\n    if (onSelectUnit == null && onClickItem == null) return null;\n    return (item: MacrostratItemIdentifier) => {\n      if (\"unit_id\" in item && !(\"col_id\" in item)) {\n        // We are selecting a unit within the column\n        return (event: MouseEvent) => {\n          if (onSelectUnit != null) {\n            onSelectUnit(item.unit_id);\n          } else if (onClickItem != null) {\n            console.warn(\n              \"Unit selection: onClickItem is defined but onSelectUnit is not; ignoring click\",\n            );\n          }\n          // Don't allow event to propagate further (e.g., to open a link)\n          event.preventDefault();\n        };\n      }\n      return undefined;\n    };\n  }, [onSelectUnit, onClickItem]);\n\n  if (clickHandlerForItem != null) {\n    // We wrap this in a MacrostratInteractionManager to handle unit selection\n    return h(\n      MacrostratInteractionProvider,\n      {\n        clickHandlerForItem,\n        inherit: true,\n      },\n      main,\n    );\n  }\n\n  return main;\n}\n\nexport function LegendPanelHeader({\n  title,\n  id,\n  onClose,\n  actions = null,\n  hiddenActions,\n}: {\n  title?: string | null;\n  id?: number | null;\n  onClose?: () => void;\n  actions?: ReactNode | null;\n  hiddenActions?: ReactNode | null;\n}) {\n  return h(\"header.legend-panel-header\", [\n    h(\"div.title-container\", [\n      h.if(title != null)(\"h3\", title),\n      h.if(hiddenActions != null)(\n        \"span.hidden-actions-container\",\n        h(\"div.hidden-actions\", hiddenActions),\n      ),\n    ]),\n    h(\"div.spacer\"),\n    h.if(id != null)(\"code.unit-id\", id),\n    h.if(actions != null)(ButtonGroup, { minimal: true }, actions),\n    h.if(onClose != null)(Button, {\n      icon: \"cross\",\n      minimal: true,\n      small: true,\n      onClick() {\n        onClose?.();\n      },\n    }),\n  ]);\n}\n\nexport enum UnitDetailsFeature {\n  AdjacentUnits = \"adjacent-units\",\n  Color = \"color\",\n  OutcropType = \"outcrop-type\",\n  JSONToggle = \"json-toggle\",\n  DepthRange = \"depth-range\",\n  ColumnName = \"column-name\",\n}\n\nexport type MacrostratItemClickHandler = (\n  event: MouseEvent,\n  item:\n    | Lithology\n    | Environment\n    | UnitLong\n    | Interval\n    | { strat_name_id: number },\n) => void;\n\nfunction UnitDetailsContent({\n  unit,\n  lithologyFeatures = new Set([\n    LithologyTagFeature.Proportion,\n    LithologyTagFeature.Attributes,\n  ]),\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n  ]),\n  onClickItem,\n  getItemHref,\n}: {\n  unit: UnitLong;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  features?: Set<UnitDetailsFeature>;\n  onClickItem?: MacrostratItemClickHandler;\n  getItemHref?: (item: Lithology | Environment | UnitLong) => string | null;\n}) {\n  const lithMap = useMacrostratDefs(\"lithologies\");\n  const envMap = useMacrostratDefs(\"environments\");\n\n  const environments = enhanceEnvironments(unit.environ, envMap);\n  const lithologies = enhanceLithologies(unit.lith ?? [], lithMap);\n\n  let outcropField: ReactNode = null;\n  if (features.has(UnitDetailsFeature.OutcropType)) {\n    // Determine outcrop type\n    let outcrop = unit.outcrop;\n    if (outcrop == \"both\") {\n      outcrop = \"surface and subsurface\";\n    }\n    outcropField = h(DataField, {\n      label: \"Outcrop\",\n      value: outcrop,\n    });\n  }\n\n  let thicknessOrHeightRange: ReactNode = null;\n  const [thickness, thicknessUnit] = getThickness(unit);\n  // Proxy for actual heights in t_pos and b_pos\n  if (\n    features.has(UnitDetailsFeature.DepthRange) &&\n    unit.t_pos != null &&\n    unit.b_pos != null &&\n    unit.min_thick == unit.max_thick && // We have an actual fixed height\n    unit.min_thick != 0 // Not a zero thickness\n  ) {\n    const label = unit.t_pos < unit.b_pos ? \"Depth\" : \"Height\";\n    const u1 = \"m\";\n\n    thicknessOrHeightRange = h(DataField, {\n      unit: u1,\n      label,\n      value: formatRange(unit.b_pos, unit.t_pos),\n      children: h(\n        Parenthetical,\n        h(Value, { value: thickness, unit: thicknessUnit }),\n      ),\n    });\n  }\n  thicknessOrHeightRange ??= h(DataField, {\n    label: \"Thickness\",\n    value: thickness,\n    unit: thicknessUnit,\n  });\n\n  /** We are trying to move away from passing the \"color\" parameter in the API */\n  let colorSwatch: ReactNode = null;\n  if (\"color\" in unit && features.has(UnitDetailsFeature.Color)) {\n    const unit1 = unit as UnitLongFull;\n    colorSwatch = h(\"div.color-swatch\", {\n      style: { backgroundColor: unit1.color },\n    });\n  }\n\n  return h(\"div.unit-details-content\", [\n    h.if(features.has(UnitDetailsFeature.ColumnName))(ColumnNameField, {\n      col_id: unit.col_id,\n    }),\n    thicknessOrHeightRange,\n    h.if(lithologies != null)(LithologyList, {\n      label: \"Lithology\",\n      lithologies: lithologies ?? [],\n      features: lithologyFeatures,\n    }),\n    h(AgeField, { unit }, [\n      h(Parenthetical, h(Duration, { value: unit.b_age - unit.t_age })),\n      h(IntervalProportions, {\n        unit,\n        onClickItem,\n      }),\n    ]),\n    h.if(environments != null)(EnvironmentsList, {\n      environments,\n    }),\n    h.if(unit.strat_name_id != null)(StratNameField, {\n      strat_name_id: unit.strat_name_id,\n    }),\n    outcropField,\n    h.if(features.has(UnitDetailsFeature.AdjacentUnits))([\n      h.if(unit.units_above != null)(\n        DataField,\n        { label: \"Above\" },\n        h(UnitIDList, {\n          units: unit.units_above,\n          showNames: true,\n        }),\n      ),\n      h.if(unit.units_below != null)(\n        DataField,\n        { label: \"Below\" },\n        h(UnitIDList, {\n          units: unit.units_below,\n          showNames: true,\n        }),\n      ),\n    ]),\n    colorSwatch,\n    h(ReferencesField, { refs: unit.refs, inline: true }),\n  ]);\n}\n\nfunction ColumnNameField({\n  col_id,\n  showIdentifier = false,\n}: {\n  col_id: number;\n  showIdentifier?: boolean;\n}) {\n  const colData = useMacrostratColumnInfo(col_id);\n  let inner: any = h(Identifier, { id: col_id });\n  const name = colData?.col_name;\n  if (name != null) {\n    inner = h(\"span.value\", [\n      h(\"span.col-name\", name),\n      h.if(showIdentifier)([\" \", h(Parenthetical, inner)]),\n    ]);\n  }\n\n  return h(\n    DataField,\n    {\n      label: \"Column\",\n    },\n    inner,\n  );\n}\n\nexport function ReferencesField({ refs, className = null, ...rest }) {\n  if (refs == null || refs.length === 0) {\n    return null;\n  }\n\n  return h(\n    DataField,\n    {\n      label: \"References\",\n      className: classNames(\"refs-field\", className),\n      ...rest,\n    },\n    h(BibInfo, { refs }),\n  );\n}\n\nfunction getThickness(unit): [string, string | null] {\n  let minThickness = unit.min_thick ?? 0;\n  let maxThickness = unit.max_thick ?? unit.min_thick ?? 0;\n  let _unit = \"m\";\n\n  if (minThickness == 0 && maxThickness == 0) {\n    return [\"Unknown\", null];\n  }\n\n  if (minThickness < 0.8 && maxThickness < 1.2) {\n    // Convert to cm\n    minThickness = minThickness * 100;\n    maxThickness = maxThickness * 100;\n    _unit = \"cm\";\n  } else if (minThickness > 800 && maxThickness > 1200) {\n    // Convert to km\n    minThickness = minThickness / 1000;\n    maxThickness = maxThickness / 1000;\n    _unit = \"km\";\n  }\n\n  if (minThickness == maxThickness) {\n    return [formatSignificance(minThickness), _unit];\n  }\n\n  return [formatRange(minThickness, maxThickness), _unit];\n}\n\nexport function ThicknessField({ unit, label = \"Thickness\" }) {\n  const [value, thicknessUnit] = getThickness(unit);\n  return h(DataField, {\n    label,\n    value,\n    unit: thicknessUnit,\n  });\n}\n\nfunction BibInfo({ refs }) {\n  const refData = useMacrostratData(\"refs\", refs);\n\n  if (refData == null 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lithologies?.map((lith) => {\n    return {\n      ...(lithMap?.get(lith.lith_id) ?? {}), // get lithology details\n      ...lith, // override with the unit's specific lithology data\n    };\n  });\n}\n\nfunction UnitIDList({ units, showNames = false }) {\n  const unitsMap = useColumnUnitsMap();\n\n  const interactionManager = useInteractionManager();\n\n  const extUnits: UnitInfo[] = useMemo(() => {\n    const u1 = units.filter((d) => d != 0);\n    if (showNames) {\n      return u1.map((unitID) => {\n        const unitData = unitsMap?.get(unitID);\n        let name: string | null = null;\n        if (unitData != null) {\n          name = defaultNameFunction(unitData);\n        }\n        return {\n          unitID,\n          colID: unitData?.col_id,\n          name,\n        };\n      });\n    } else {\n      return u1.map((unitID) => ({ unitID }));\n    }\n  }, [units, unitsMap]);\n\n  if (extUnits.length === 0) {\n    return h(\"span.no-units\", \"None\");\n  }\n\n  return h(\n    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package/dist/unit-details/panel.js

@@ -54,7 +54,7 @@ function UnitDetailsPanel({
         key: "json-view-toggle",
         className: classNames("json-view-toggle", { enabled: setShowJSON }),
         onClick(evt) {
-          setShowJSON(!showJSON);
+          setShowJSON(!_showJSON);
           evt.stopPropagation();
         }
       }),

package/dist/unit-details/panel.js.map

@@ -1 +1 @@
-{"version":3,"file":"panel.js","sources":["../../src/unit-details/panel.ts"],"sourcesContent":["import { JSONView } from \"@macrostrat/ui-components\";\nimport { Button, ButtonGroup } from \"@blueprintjs/core\";\nimport { ReactNode, useMemo, useState } from \"react\";\nimport {\n  DataField,\n  EnvironmentsList,\n  ItemList,\n  LithologyList,\n  LithologyTagFeature,\n  MacrostratInteractionManager,\n  MacrostratInteractionProvider,\n  MacrostratItemIdentifier,\n  Parenthetical,\n  useInteractionManager,\n  Value,\n} from \"@macrostrat/data-components\";\nimport { useColumnUnitsMap } from \"../data-provider\";\nimport {\n  useMacrostratColumnInfo,\n  useMacrostratData,\n  useMacrostratDefs,\n} from \"@macrostrat/data-provider\";\nimport type {\n  Environment,\n  EnvironmentIdentifier,\n  Interval,\n  Lithology,\n  UnitLong,\n  UnitLongFull,\n} from \"@macrostrat/api-types\";\nimport { defaultNameFunction } from \"../units/names\";\nimport classNames from \"classnames\";\nimport { AgeField, Duration, IntervalProportions } from \"./age-range\";\nimport { formatRange, formatSignificance } from \"./utils.ts\";\nimport h from \"./panel.module.sass\";\nimport { StratNameField } from \"./strat-names.ts\";\nimport { Identifier, UnitIdentifier, UnitInfo } from \"./identifiers.ts\";\nimport { LithologyIdentifier } from \"@macrostrat/api-types/src/lithologies\";\n\nexport interface UnitDetailsPanelProps {\n  unit: any;\n  onClose?: any;\n  className?: string;\n  actions?: ReactNode;\n  hiddenActions?: ReactNode;\n  features?: Set<UnitDetailsFeature>;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  onSelectUnit?: (unitID: number) => void;\n  onClickItem?: MacrostratItemClickHandler;\n  interactionManager?: MacrostratInteractionManager;\n  showJSON?: boolean;\n}\n\nexport function UnitDetailsPanel({\n  unit,\n  onClose,\n  className,\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n    UnitDetailsFeature.JSONToggle,\n    UnitDetailsFeature.DepthRange,\n  ]),\n  lithologyFeatures,\n  actions,\n  hiddenActions = null,\n  onSelectUnit,\n  onClickItem,\n  showJSON,\n}: UnitDetailsPanelProps) {\n  const [_showJSON, setShowJSON] = useState(false);\n\n  let content: ReactNode = null;\n  if (showJSON ?? _showJSON) {\n    content = h(JSONView, { data: unit, showRoot: false });\n  } else {\n    content = h(UnitDetailsContent, {\n      unit,\n      features,\n      lithologyFeatures,\n      onClickItem,\n    });\n  }\n\n  let title = defaultNameFunction(unit);\n\n  if (features.has(UnitDetailsFeature.JSONToggle)) {\n    hiddenActions = h([\n      h(Button, {\n        icon: \"code\",\n        small: true,\n        minimal: true,\n        key: \"json-view-toggle\",\n        className: classNames(\"json-view-toggle\", { enabled: setShowJSON }),\n        onClick(evt) {\n          setShowJSON(!showJSON);\n          evt.stopPropagation();\n        },\n      }),\n      hiddenActions,\n    ]);\n  }\n\n  const main = h(\"div.unit-details-panel\", { className }, [\n    h(LegendPanelHeader, {\n      onClose,\n      title,\n      id: unit.unit_id,\n      actions,\n      hiddenActions,\n    }),\n    h(\"div.unit-details-content-holder\", content),\n  ]);\n\n  /** Handle unit selection clicks */\n  const clickHandlerForItem = useMemo(() => {\n    if (onSelectUnit == null && onClickItem == null) return null;\n    return (item: MacrostratItemIdentifier) => {\n      if (\"unit_id\" in item && !(\"col_id\" in item)) {\n        // We are selecting a unit within the column\n        return (event: MouseEvent) => {\n          if (onSelectUnit != null) {\n            onSelectUnit(item.unit_id);\n          } else if (onClickItem != null) {\n            console.warn(\n              \"Unit selection: onClickItem is defined but onSelectUnit is not; ignoring click\",\n            );\n          }\n          // Don't allow event to propagate further (e.g., to open a link)\n          event.preventDefault();\n        };\n      }\n      return undefined;\n    };\n  }, [onSelectUnit, onClickItem]);\n\n  if (clickHandlerForItem != null) {\n    // We wrap this in a MacrostratInteractionManager to handle unit selection\n    return h(\n      MacrostratInteractionProvider,\n      {\n        clickHandlerForItem,\n        inherit: true,\n      },\n      main,\n    );\n  }\n\n  return main;\n}\n\nexport function LegendPanelHeader({\n  title,\n  id,\n  onClose,\n  actions = null,\n  hiddenActions,\n}: {\n  title?: string | null;\n  id?: number | null;\n  onClose?: () => void;\n  actions?: ReactNode | null;\n  hiddenActions?: ReactNode | null;\n}) {\n  return h(\"header.legend-panel-header\", [\n    h(\"div.title-container\", [\n      h.if(title != null)(\"h3\", title),\n      h.if(hiddenActions != null)(\n        \"span.hidden-actions-container\",\n        h(\"div.hidden-actions\", hiddenActions),\n      ),\n    ]),\n    h(\"div.spacer\"),\n    h.if(id != null)(\"code.unit-id\", id),\n    h.if(actions != null)(ButtonGroup, { minimal: true }, actions),\n    h.if(onClose != null)(Button, {\n      icon: \"cross\",\n      minimal: true,\n      small: true,\n      onClick() {\n        onClose?.();\n      },\n    }),\n  ]);\n}\n\nexport enum UnitDetailsFeature {\n  AdjacentUnits = \"adjacent-units\",\n  Color = \"color\",\n  OutcropType = \"outcrop-type\",\n  JSONToggle = \"json-toggle\",\n  DepthRange = \"depth-range\",\n  ColumnName = \"column-name\",\n}\n\nexport type MacrostratItemClickHandler = (\n  event: MouseEvent,\n  item:\n    | Lithology\n    | Environment\n    | UnitLong\n    | Interval\n    | { strat_name_id: number },\n) => void;\n\nfunction UnitDetailsContent({\n  unit,\n  lithologyFeatures = new Set([\n    LithologyTagFeature.Proportion,\n    LithologyTagFeature.Attributes,\n  ]),\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n  ]),\n  onClickItem,\n  getItemHref,\n}: {\n  unit: UnitLong;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  features?: Set<UnitDetailsFeature>;\n  onClickItem?: MacrostratItemClickHandler;\n  getItemHref?: (item: Lithology | Environment | UnitLong) => string | null;\n}) {\n  const lithMap = useMacrostratDefs(\"lithologies\");\n  const envMap = useMacrostratDefs(\"environments\");\n\n  const environments = enhanceEnvironments(unit.environ, envMap);\n  const lithologies = enhanceLithologies(unit.lith ?? [], lithMap);\n\n  let outcropField: ReactNode = null;\n  if (features.has(UnitDetailsFeature.OutcropType)) {\n    // Determine outcrop type\n    let outcrop = unit.outcrop;\n    if (outcrop == \"both\") {\n      outcrop = \"surface and subsurface\";\n    }\n    outcropField = h(DataField, {\n      label: \"Outcrop\",\n      value: outcrop,\n    });\n  }\n\n  let thicknessOrHeightRange: ReactNode = null;\n  const [thickness, thicknessUnit] = getThickness(unit);\n  // Proxy for actual heights in t_pos and b_pos\n  if (\n    features.has(UnitDetailsFeature.DepthRange) &&\n    unit.t_pos != null &&\n    unit.b_pos != null &&\n    unit.min_thick == unit.max_thick && // We have an actual fixed height\n    unit.min_thick != 0 // Not a zero thickness\n  ) {\n    const label = unit.t_pos < unit.b_pos ? \"Depth\" : \"Height\";\n    const u1 = \"m\";\n\n    thicknessOrHeightRange = h(DataField, {\n      unit: u1,\n      label,\n      value: formatRange(unit.b_pos, unit.t_pos),\n      children: h(\n        Parenthetical,\n        h(Value, { value: thickness, unit: thicknessUnit }),\n      ),\n    });\n  }\n  thicknessOrHeightRange ??= h(DataField, {\n    label: \"Thickness\",\n    value: thickness,\n    unit: thicknessUnit,\n  });\n\n  /** We are trying to move away from passing the \"color\" parameter in the API */\n  let colorSwatch: ReactNode = null;\n  if (\"color\" in unit && features.has(UnitDetailsFeature.Color)) {\n    const unit1 = unit as UnitLongFull;\n    colorSwatch = h(\"div.color-swatch\", {\n      style: { backgroundColor: unit1.color },\n    });\n  }\n\n  return h(\"div.unit-details-content\", [\n    h.if(features.has(UnitDetailsFeature.ColumnName))(ColumnNameField, {\n      col_id: unit.col_id,\n    }),\n    thicknessOrHeightRange,\n    h.if(lithologies != null)(LithologyList, {\n      label: \"Lithology\",\n      lithologies: lithologies ?? [],\n      features: lithologyFeatures,\n    }),\n    h(AgeField, { unit }, [\n      h(Parenthetical, h(Duration, { value: unit.b_age - unit.t_age })),\n      h(IntervalProportions, {\n        unit,\n        onClickItem,\n      }),\n    ]),\n    h.if(environments != null)(EnvironmentsList, {\n      environments,\n    }),\n    h.if(unit.strat_name_id != null)(StratNameField, {\n      strat_name_id: unit.strat_name_id,\n    }),\n    outcropField,\n    h.if(features.has(UnitDetailsFeature.AdjacentUnits))([\n      h.if(unit.units_above != null)(\n        DataField,\n        { label: \"Above\" },\n        h(UnitIDList, {\n          units: unit.units_above,\n          showNames: true,\n        }),\n      ),\n      h.if(unit.units_below != null)(\n        DataField,\n        { label: \"Below\" },\n        h(UnitIDList, {\n          units: unit.units_below,\n          showNames: true,\n        }),\n      ),\n    ]),\n    colorSwatch,\n    h(ReferencesField, { refs: unit.refs, inline: true 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unit.max_thick ?? unit.min_thick ?? 0;\n  let _unit = \"m\";\n\n  if (minThickness == 0 && maxThickness == 0) {\n    return [\"Unknown\", null];\n  }\n\n  if (minThickness < 0.8 && maxThickness < 1.2) {\n    // Convert to cm\n    minThickness = minThickness * 100;\n    maxThickness = maxThickness * 100;\n    _unit = \"cm\";\n  } else if (minThickness > 800 && maxThickness > 1200) {\n    // Convert to km\n    minThickness = minThickness / 1000;\n    maxThickness = maxThickness / 1000;\n    _unit = \"km\";\n  }\n\n  if (minThickness == maxThickness) {\n    return [formatSignificance(minThickness), _unit];\n  }\n\n  return [formatRange(minThickness, maxThickness), _unit];\n}\n\nexport function ThicknessField({ unit, label = \"Thickness\" }) {\n  const [value, thicknessUnit] = getThickness(unit);\n  return h(DataField, {\n    label,\n    value,\n    unit: thicknessUnit,\n  });\n}\n\nfunction BibInfo({ refs }) {\n  const refData = useMacrostratData(\"refs\", refs);\n\n  if (refData == null || refData.length === 0) {\n    return null;\n  }\n\n  if (refData.length == 1) {\n    return h(Citation, {\n      data: refData[0],\n      tag: \"span\",\n      key: refData[0].ref_id,\n    });\n  }\n\n  return h(\n    \"ul.refs\",\n    refData.map((data, i) =>\n      h(Citation, { data, tag: \"li\", key: data.ref_id }),\n    ),\n  );\n}\n\nfunction Citation({ data, tag = \"p\" }) {\n  return h(tag, { className: \"citation\" }, [\n    h(\"span.authors\", data.author),\n    \", \",\n    h(\"span.year\", data.pub_year),\n    \", \",\n    h(\"span.title\", data.ref),\n  ]);\n}\n\nfunction enhanceEnvironments(\n  environments?: EnvironmentIdentifier[] | null,\n  envMap?: Map<number, Environment> | null,\n) {\n  return environments?.map((env) => {\n    return {\n      ...(envMap?.get(env.environ_id) ?? {}),\n      ...env,\n    };\n  });\n}\n\nfunction enhanceLithologies(\n  lithologies?: LithologyIdentifier[] | null,\n  lithMap?: Map<number, any> | null,\n) {\n  return lithologies?.map((lith) => {\n    return {\n      ...(lithMap?.get(lith.lith_id) ?? {}), // get lithology details\n      ...lith, // override with the unit's specific lithology data\n    };\n  });\n}\n\nfunction UnitIDList({ units, showNames = false }) {\n  const unitsMap = useColumnUnitsMap();\n\n  const interactionManager = useInteractionManager();\n\n  const extUnits: UnitInfo[] = useMemo(() => {\n    const u1 = units.filter((d) => d != 0);\n    if (showNames) {\n      return u1.map((unitID) => {\n        const unitData = unitsMap?.get(unitID);\n        let name: string | null = null;\n        if (unitData != null) {\n          name = defaultNameFunction(unitData);\n        }\n        return {\n          unitID,\n          colID: unitData?.col_id,\n          name,\n        };\n      });\n    } else {\n      return u1.map((unitID) => ({ unitID }));\n    }\n  }, [units, unitsMap]);\n\n  if (extUnits.length === 0) {\n    return h(\"span.no-units\", \"None\");\n  }\n\n  return h(\n    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