@macrostrat/column-views 3.3.4 → 3.4.0

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Files changed (91) hide show
  1. package/CHANGELOG.md +63 -0
  2. package/dist/age-axis.d.ts +3 -3
  3. package/dist/column.cjs +2 -1
  4. package/dist/column.cjs.map +1 -1
  5. package/dist/column.d.ts +3 -3
  6. package/dist/column.js +2 -1
  7. package/dist/column.js.map +1 -1
  8. package/dist/correlation-chart/main.d.ts +1 -1
  9. package/dist/correlation-chart/prepare-data.d.ts +1 -1
  10. package/dist/data-provider/unit-selection.cjs +7 -3
  11. package/dist/data-provider/unit-selection.cjs.map +1 -1
  12. package/dist/data-provider/unit-selection.d.ts +3 -2
  13. package/dist/data-provider/unit-selection.js +7 -3
  14. package/dist/data-provider/unit-selection.js.map +1 -1
  15. package/dist/facets/carbon-isotopes/data-area.d.ts +1 -1
  16. package/dist/facets/carbon-isotopes/data-provider.d.ts +1 -1
  17. package/dist/facets/measurements/base.d.ts +2 -2
  18. package/dist/index.cjs +13 -8
  19. package/dist/index.cjs.map +1 -1
  20. package/dist/index.js +7 -2
  21. package/dist/index.js.map +1 -1
  22. package/dist/maps/column-correlation/state.d.ts +1 -1
  23. package/dist/maps/column-navigation/mapbox/state.d.ts +1 -1
  24. package/dist/maps/column-navigation/svg/data-fetcher.d.ts +1 -1
  25. package/dist/maps/column-navigation/svg/layers.d.ts +3 -3
  26. package/dist/maps/inset-map/index.d.ts +1 -1
  27. package/dist/maps/layers/columns.d.ts +1 -1
  28. package/dist/maps/layers/units.d.ts +1 -1
  29. package/dist/prepare-units/composite-scale.d.ts +1 -1
  30. package/dist/prepare-units/dynamic-scales.d.ts +1 -1
  31. package/dist/prepare-units/helpers.cjs +83 -49
  32. package/dist/prepare-units/helpers.cjs.map +1 -1
  33. package/dist/prepare-units/helpers.d.ts +21 -4
  34. package/dist/prepare-units/helpers.js +84 -50
  35. package/dist/prepare-units/helpers.js.map +1 -1
  36. package/dist/prepare-units/index.cjs.map +1 -1
  37. package/dist/prepare-units/index.d.ts +1 -1
  38. package/dist/prepare-units/index.js.map +1 -1
  39. package/dist/prepare-units/types.d.ts +2 -2
  40. package/dist/prepare-units/utils.d.ts +2 -2
  41. package/dist/section.cjs +1 -2
  42. package/dist/section.cjs.map +1 -1
  43. package/dist/section.d.ts +1 -1
  44. package/dist/section.js +1 -2
  45. package/dist/section.js.map +1 -1
  46. package/dist/unit-details/age-range.cjs.map +1 -1
  47. package/dist/unit-details/age-range.d.ts +2 -1
  48. package/dist/unit-details/age-range.js.map +1 -1
  49. package/dist/unit-details/identifiers.cjs +56 -0
  50. package/dist/unit-details/identifiers.cjs.map +1 -0
  51. package/dist/unit-details/identifiers.d.ts +31 -0
  52. package/dist/unit-details/identifiers.js +54 -0
  53. package/dist/unit-details/identifiers.js.map +1 -0
  54. package/dist/unit-details/index.d.ts +2 -0
  55. package/dist/unit-details/panel.cjs +73 -147
  56. package/dist/unit-details/panel.cjs.map +1 -1
  57. package/dist/unit-details/panel.d.ts +67 -0
  58. package/dist/unit-details/panel.js +19 -92
  59. package/dist/unit-details/panel.js.map +1 -1
  60. package/dist/unit-details/popover.cjs +1 -2
  61. package/dist/unit-details/popover.cjs.map +1 -1
  62. package/dist/unit-details/popover.js +2 -3
  63. package/dist/unit-details/popover.js.map +1 -1
  64. package/dist/unit-details/strat-names.cjs +44 -0
  65. package/dist/unit-details/strat-names.cjs.map +1 -0
  66. package/dist/unit-details/strat-names.d.ts +14 -0
  67. package/dist/unit-details/strat-names.js +42 -0
  68. package/dist/unit-details/strat-names.js.map +1 -0
  69. package/dist/units/boxes.d.ts +2 -2
  70. package/dist/units/colors.d.ts +1 -1
  71. package/dist/units/composite.d.ts +4 -4
  72. package/dist/units/index.cjs +20 -6
  73. package/dist/units/index.cjs.map +1 -1
  74. package/dist/units/index.d.ts +12 -21
  75. package/dist/units/index.js +20 -6
  76. package/dist/units/index.js.map +1 -1
  77. package/dist/units/names.d.ts +3 -3
  78. package/dist/units/resolvers.d.ts +2 -2
  79. package/package.json +19 -19
  80. package/src/column.ts +1 -1
  81. package/src/data-provider/unit-selection.ts +8 -4
  82. package/src/prepare-units/helpers.ts +121 -72
  83. package/src/prepare-units/index.ts +1 -1
  84. package/src/section.ts +0 -1
  85. package/src/unit-details/age-range.ts +1 -0
  86. package/src/unit-details/identifiers.ts +67 -0
  87. package/src/unit-details/index.ts +2 -0
  88. package/src/unit-details/panel.ts +27 -131
  89. package/src/unit-details/popover.ts +2 -7
  90. package/src/unit-details/strat-names.ts +57 -0
  91. package/src/units/index.ts +31 -8
@@ -1,66 +1,99 @@
1
1
  import { group } from "d3-array";
2
2
  import { ColumnAxisType } from "@macrostrat/column-components";
3
- import { getUnitHeightRange, ensureRealFloat, ensureArray, unitsOverlap, createUnitSorter } from "./utils.js";
3
+ import { ensureRealFloat, getUnitHeightRange, ensureArray, createUnitSorter, unitsOverlap } from "./utils.js";
4
4
  import { compareAgeRanges, AgeRangeRelationship } from "@macrostrat/stratigraphy-utils";
5
5
  const dt = 1e-3;
6
- function preprocessUnits(section, axisType = ColumnAxisType.AGE) {
7
- let units = section.units;
8
- let divisions = units.map((...args) => extendDivision(...args, axisType));
9
- for (let d of divisions) {
10
- const overlappingUnits = divisions.filter(
11
- (u) => d.overlappingUnits.includes(u.unit_id)
12
- );
13
- const columns = overlappingUnits.map((d2) => d2.column);
14
- if (columns.includes(d.column)) {
15
- let col = 0;
16
- while (columns.includes(col)) {
17
- col++;
18
- }
19
- d.column ??= col;
20
- }
21
- const [b_pos, t_pos] = getUnitHeightRange(d, axisType);
22
- if (axisType == ColumnAxisType.AGE) {
23
- if (b_pos > section.b_age) {
24
- d.b_clip_pos = section.b_age;
25
- }
26
- if (t_pos < section.t_age) {
27
- d.t_clip_pos = section.t_age;
6
+ class UnitGroup {
7
+ units;
8
+ constructor(units) {
9
+ this.units = units;
10
+ }
11
+ get t_age() {
12
+ return Math.min(...this.units.map((d) => d.t_age));
13
+ }
14
+ get b_age() {
15
+ return Math.max(...this.units.map((d) => d.b_age));
16
+ }
17
+ getUnits() {
18
+ return assignColumnsToUnitsWithinOverlappingGroup(this);
19
+ }
20
+ }
21
+ function groupUnitsByMutualOverlap(units, tolerance = dt) {
22
+ const sections = groupUnitsIntoSectionsByOverlap(
23
+ units,
24
+ ColumnAxisType.AGE,
25
+ tolerance
26
+ );
27
+ return sections.map((d) => {
28
+ return new UnitGroup(d.units);
29
+ });
30
+ }
31
+ const sortByAge = createUnitSorter(ColumnAxisType.AGE);
32
+ function assignColumnsToUnitsWithinOverlappingGroup(group2) {
33
+ const sortedUnits = [...group2.units].sort((a, b) => b.b_age - a.b_age);
34
+ const columns = [];
35
+ for (const unit of sortedUnits) {
36
+ let didAddToExistingColumn = false;
37
+ for (const column of columns) {
38
+ const lastUnit = column[column.length - 1];
39
+ if (!unitsOverlap(unit, lastUnit, ColumnAxisType.AGE, dt)) {
40
+ column.push(unit);
41
+ didAddToExistingColumn = true;
42
+ break;
28
43
  }
29
44
  }
30
- if (axisType == ColumnAxisType.DEPTH) {
31
- if (b_pos > section.b_pos) {
32
- d.b_clip_pos = section.b_pos;
33
- }
34
- if (t_pos < section.t_pos) {
35
- d.t_clip_pos = section.t_pos;
36
- }
45
+ if (!didAddToExistingColumn) {
46
+ columns.push([unit]);
37
47
  }
38
48
  }
39
- return divisions;
49
+ const units = columns.flatMap(
50
+ (column, columnIndex) => column.map((unit) => {
51
+ return {
52
+ ...unit,
53
+ overlap: {
54
+ column: columnIndex,
55
+ nColumns: columns.length,
56
+ unitGroup: group2
57
+ }
58
+ };
59
+ })
60
+ );
61
+ return units.toSorted(sortByAge);
40
62
  }
41
- function extendDivision(unit, i, divisions, axisType = ColumnAxisType.AGE) {
63
+ function preprocessUnits(section, axisType = ColumnAxisType.AGE) {
64
+ let units = section.units;
42
65
  let tolerance = 1e-3;
43
66
  if (axisType != ColumnAxisType.AGE) {
44
67
  tolerance = 0.01;
45
68
  }
46
- const overlappingUnits = divisions.filter(
47
- (d) => d.unit_id != unit.unit_id && unitsOverlap(unit, d, axisType, tolerance)
69
+ const unitGroups = groupUnitsByMutualOverlap(units, tolerance);
70
+ const divisions = [];
71
+ for (const group2 of unitGroups) {
72
+ divisions.push(...group2.getUnits());
73
+ }
74
+ return divisions.map(
75
+ (d) => enhanceUnitWithClippingPosition(section, d, axisType)
48
76
  );
49
- const u_pos = getUnitHeightRange(unit, axisType);
50
- const bottomOverlap = overlappingUnits.some((d) => {
51
- const d_pos = getUnitHeightRange(d, axisType);
52
- return d_pos[0] < u_pos[0] + dt;
53
- });
54
- let column = 0;
55
- if (overlappingUnits.length == 1) {
56
- column = 1;
77
+ }
78
+ function enhanceUnitWithClippingPosition(section, d, axisType) {
79
+ const [b_pos, t_pos] = getUnitHeightRange(d, axisType);
80
+ if (axisType == ColumnAxisType.AGE) {
81
+ if (b_pos > section.b_age) {
82
+ d.b_clip_pos = section.b_age;
83
+ }
84
+ if (t_pos < section.t_age) {
85
+ d.t_clip_pos = section.t_age;
86
+ }
57
87
  }
58
- return {
59
- ...unit,
60
- bottomOverlap,
61
- column: unit.column ?? column,
62
- overlappingUnits: overlappingUnits.map((d) => d.unit_id)
63
- };
88
+ if (axisType == ColumnAxisType.DEPTH) {
89
+ if (b_pos > section.b_pos) {
90
+ d.b_clip_pos = section.b_pos;
91
+ }
92
+ if (t_pos < section.t_pos) {
93
+ d.t_clip_pos = section.t_pos;
94
+ }
95
+ }
96
+ return d;
64
97
  }
65
98
  function groupUnitsIntoSectionsBySectionID(units, axisType = ColumnAxisType.AGE) {
66
99
  let groups = Array.from(group(units, (d) => d.section_id));
@@ -75,12 +108,12 @@ function groupUnitsIntoSectionsBySectionID(units, axisType = ColumnAxisType.AGE)
75
108
  groups1.sort(compareSections);
76
109
  return groups1;
77
110
  }
78
- function groupUnitsIntoSectionsByOverlap(units, axisType = ColumnAxisType.AGE) {
111
+ function groupUnitsIntoSectionsByOverlap(units, axisType = ColumnAxisType.AGE, tolerance = dt) {
79
112
  const sectionList = [];
80
113
  for (const unit of units) {
81
114
  const heightRange = getUnitHeightRange(unit, axisType);
82
115
  let section = sectionList.find(
83
- (s) => compareAgeRanges(heightRange, s.heightRange) !== AgeRangeRelationship.Disjoint
116
+ (s) => compareAgeRanges(heightRange, s.heightRange, tolerance) !== AgeRangeRelationship.Disjoint
84
117
  );
85
118
  if (section == null) {
86
119
  sectionList.push({
@@ -187,6 +220,7 @@ function preprocessSectionUnit(unit) {
187
220
  };
188
221
  }
189
222
  export {
223
+ enhanceUnitWithClippingPosition,
190
224
  getSectionAgeRange,
191
225
  getSectionPosRange,
192
226
  groupUnitsIntoSectionsByOverlap,
@@ -1 +1 @@
1
- {"version":3,"file":"helpers.js","sources":["../../src/prepare-units/helpers.ts"],"sourcesContent":["import type { BaseUnit, UnitLong } from \"@macrostrat/api-types\";\nimport { group } from \"d3-array\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport {\n createUnitSorter,\n ensureArray,\n ensureRealFloat,\n getUnitHeightRange,\n unitsOverlap,\n} from \"./utils\";\nimport {\n AgeRangeRelationship,\n compareAgeRanges,\n} from \"@macrostrat/stratigraphy-utils\";\nimport type { ExtUnit, SectionInfo, StratigraphicPackage } from \"./types\";\n\nconst dt = 0.001;\n\nexport function preprocessUnits<T extends UnitLong = UnitLong>(\n section: SectionInfo<T>,\n axisType: ColumnAxisType = ColumnAxisType.AGE,\n): ExtUnit[] {\n /** Preprocess units to add overlapping units and columns. */\n let units = section.units;\n\n let divisions = units.map((...args) => extendDivision(...args, axisType));\n for (let d of divisions) {\n const overlappingUnits = divisions.filter((u) =>\n d.overlappingUnits.includes(u.unit_id),\n );\n\n // Overlapping columns\n const columns = overlappingUnits.map((d) => d.column);\n\n if (columns.includes(d.column)) {\n let col = 0;\n // Go through columns to find a better index\n while (columns.includes(col)) {\n col++;\n }\n d.column ??= col;\n }\n\n // If unit overlaps the edges of a section, set the clip positions\n const [b_pos, t_pos] = getUnitHeightRange(d, axisType);\n if (axisType == ColumnAxisType.AGE) {\n if (b_pos > section.b_age) {\n d.b_clip_pos = section.b_age;\n }\n if (t_pos < section.t_age) {\n d.t_clip_pos = section.t_age;\n }\n }\n if (axisType == ColumnAxisType.DEPTH) {\n if (b_pos > section.b_pos) {\n d.b_clip_pos = section.b_pos;\n }\n if (t_pos < section.t_pos) {\n d.t_clip_pos = section.t_pos;\n }\n }\n // if (axisType == ColumnAxisType.HEIGHT) {\n // if (b_pos < section.b_pos) {\n // d.b_clip_pos = section.b_pos;\n // }\n // if (t_pos > section.t_pos) {\n // d.t_clip_pos = section.t_pos;\n // }\n // }\n }\n\n return divisions;\n}\n\nfunction extendDivision(\n unit: UnitLong,\n i: number,\n divisions: UnitLong[],\n axisType: ColumnAxisType = ColumnAxisType.AGE,\n): ExtUnit {\n // TODO: make this configurable\n let tolerance = 0.001; // 1 kyr tolerance for age columns\n if (axisType != ColumnAxisType.AGE) {\n tolerance = 0.01; // 1cm tolerance for height/depth columns\n }\n\n const overlappingUnits = divisions.filter(\n (d) =>\n d.unit_id != unit.unit_id && unitsOverlap(unit, d, axisType, tolerance),\n );\n const u_pos = getUnitHeightRange(unit, axisType);\n const bottomOverlap = overlappingUnits.some((d) => {\n const d_pos = getUnitHeightRange(d, axisType);\n // Check if the unit is below the current unit\n return d_pos[0] < u_pos[0] + dt;\n });\n let column = 0;\n if (overlappingUnits.length == 1) {\n column = 1;\n }\n\n return {\n ...unit,\n bottomOverlap,\n column: unit.column ?? column,\n overlappingUnits: overlappingUnits.map((d) => d.unit_id),\n };\n}\n\nexport function groupUnitsIntoSectionsBySectionID<T extends UnitLong>(\n units: T[],\n axisType: ColumnAxisType = ColumnAxisType.AGE,\n): SectionInfo<T>[] {\n /** Group units into sections by section_id.\n * This works for large-scale Macrostrat columns, where units are grouped by section_id.\n * */\n let groups = Array.from(group(units, (d) => d.section_id));\n const unitComparator = createUnitSorter(axisType);\n\n const groups1 = groups.map(([section_id, sectionUnits]) => {\n const [b_age, t_age] = getSectionAgeRange(sectionUnits);\n const [b_pos, t_pos] = getSectionPosRange(sectionUnits, axisType);\n\n // sort units by position\n sectionUnits.sort(unitComparator);\n return { section_id, t_age, b_age, b_pos, t_pos, units: sectionUnits };\n });\n // Sort sections by increasing top age, then increasing bottom age.\n // Sections have no relative ordinal position other than age...\n const compareSections = createUnitSorter(axisType) as (\n a: StratigraphicPackage,\n b: StratigraphicPackage,\n ) => number;\n groups1.sort(compareSections);\n return groups1;\n}\n\ninterface WorkingSection {\n units: UnitLong[];\n // Position or age\n heightRange?: [number, number];\n}\n\nexport function groupUnitsIntoSectionsByOverlap<T extends UnitLong>(\n units: T[],\n axisType: ColumnAxisType = ColumnAxisType.AGE,\n): SectionInfo<T>[] {\n /** Group units into sections by overlap.\n * This creates \"synthetic\" sections that correspond to packages bound by scale gaps.\n * This is most useful in the height and depth domains, where gaps (e.g., missing core) are\n * common.\n * */\n // Start with each unit as its own \"section\", and progressively merge...\n const sectionList: WorkingSection[] = [];\n for (const unit of units) {\n // Check if the unit overlaps with any existing section\n const heightRange = getUnitHeightRange(unit, axisType);\n let section: WorkingSection | undefined = sectionList.find(\n (s) =>\n compareAgeRanges(heightRange, s.heightRange) !==\n AgeRangeRelationship.Disjoint,\n );\n if (section == null) {\n // No overlap, create a new section\n sectionList.push({\n heightRange,\n units: [unit],\n });\n } else {\n // Overlap, merge the unit into the section\n section.units.push(unit);\n // Update the height range\n if (axisType == ColumnAxisType.DEPTH || axisType == ColumnAxisType.AGE) {\n section.heightRange = [\n Math.max(section.heightRange[0], heightRange[0]),\n Math.min(section.heightRange[1], heightRange[1]),\n ];\n } else {\n section.heightRange = [\n Math.min(section.heightRange[0], heightRange[0]),\n Math.max(section.heightRange[1], heightRange[1]),\n ];\n }\n }\n }\n // We should have a section for each unit, now we can convert to SectionInfo\n // Ages have to be really actually ages, not heights\n\n return sectionList.map((section, i) => {\n const [b_age, t_age] = getSectionAgeRange(section.units);\n const [b_pos, t_pos] = getSectionPosRange(section.units, axisType);\n return {\n // Negative section IDs are used to indicate that these are synthetic sections\n section_id: -i,\n t_age,\n b_age,\n t_pos,\n b_pos,\n units: section.units as T[],\n };\n });\n}\n\nexport function getSectionPosRange(\n units: BaseUnit[],\n axisType: ColumnAxisType,\n): [number, number] {\n /** Get the overall position range of a set of units. */\n const t_positions = units.map((d) => {\n switch (axisType) {\n case ColumnAxisType.AGE:\n return d.t_age;\n case ColumnAxisType.DEPTH:\n case ColumnAxisType.HEIGHT:\n case ColumnAxisType.ORDINAL:\n return d.t_pos;\n default:\n throw new Error(`Unknown axis type: ${axisType}`);\n }\n });\n const b_positions = units.map((d) => {\n switch (axisType) {\n case ColumnAxisType.AGE:\n return d.b_age;\n case ColumnAxisType.DEPTH:\n case ColumnAxisType.HEIGHT:\n case ColumnAxisType.ORDINAL:\n return d.b_pos;\n default:\n throw new Error(`Unknown axis type: ${axisType}`);\n }\n });\n if (axisType == ColumnAxisType.AGE || axisType == ColumnAxisType.DEPTH) {\n return [Math.max(...b_positions), Math.min(...t_positions)];\n } else {\n return [Math.min(...b_positions), Math.max(...t_positions)];\n }\n}\n\nexport function getSectionAgeRange(units: BaseUnit[]): [number, number] {\n /** Get the overall age range of a set of units. */\n return getSectionPosRange(units, ColumnAxisType.AGE);\n}\n\nexport function mergeOverlappingSections<T extends UnitLong>(\n sections: SectionInfo<T>[],\n): SectionInfo<T>[] {\n /** Columns can have sections that overlap in time. Here, we merge overlapping\n * sections into a single section to correctly render gap-bound packages.\n */\n const [firstSection, ...rest] = sections;\n const newSections = [firstSection];\n for (const section of rest) {\n const lastSection = newSections[newSections.length - 1];\n if (\n lastSection.b_age < section.t_age ||\n lastSection.t_age > section.b_age\n ) {\n // No overlap, add the section as normal\n newSections.push(section);\n continue;\n }\n\n // Overlap, merge the sections\n lastSection.section_id = [\n ...ensureArray(lastSection.section_id),\n ...ensureArray(section.section_id),\n ];\n lastSection.units.push(...section.units);\n lastSection.b_age = Math.max(lastSection.b_age, section.b_age);\n lastSection.t_age = Math.min(lastSection.t_age, section.t_age);\n }\n return newSections;\n}\n\nexport function preprocessSectionUnit(unit: UnitLong): UnitLong {\n /** Preprocess a single unit for a \"section\" column type.\n * This mostly handles vagaries of eODP-style columns.\n * */\n\n let b_pos = unit.b_pos;\n let t_pos = unit.t_pos;\n\n let unit_name = unit.unit_name;\n\n // eODP columns sometimes have overlapping core sections, which are encoded in the name field\n // Match eODP section names\n const match = unit.unit_name.match(/^(\\d+(\\.\\d+)?)-(\\d+(\\.\\d+)?): (.+)/);\n\n if (match) {\n // These values should already be set if we've used the show_positions flag\n t_pos ??= ensureRealFloat(match[1]);\n b_pos ??= ensureRealFloat(match[3]);\n unit_name = match[5];\n }\n\n return {\n ...unit,\n b_pos: ensureRealFloat(b_pos),\n t_pos: ensureRealFloat(t_pos),\n unit_name,\n 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+ {"version":3,"file":"helpers.js","sources":["../../src/prepare-units/helpers.ts"],"sourcesContent":["import type { BaseUnit, UnitLong } from \"@macrostrat/api-types\";\nimport { group } from \"d3-array\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport {\n createUnitSorter,\n ensureArray,\n ensureRealFloat,\n getUnitHeightRange,\n unitsOverlap,\n} from \"./utils\";\nimport {\n AgeRangeRelationship,\n compareAgeRanges,\n} from \"@macrostrat/stratigraphy-utils\";\nimport type { ExtUnit, SectionInfo, StratigraphicPackage } from \"./types\";\n\nconst dt = 0.001;\n\nexport type UnitWithDefinedOverlap<T extends BaseUnit> = T & {\n overlap: UnitOverlapInfo<T>;\n};\n\ntype UnitOverlapInfo<T extends BaseUnit> = {\n column: number;\n nColumns: number;\n unitGroup: UnitGroup<T>;\n};\n\nclass UnitGroup<T extends BaseUnit> implements StratigraphicPackage {\n units: T[];\n\n constructor(units: T[]) {\n this.units = units;\n }\n\n get t_age(): number {\n return Math.min(...this.units.map((d) => d.t_age));\n }\n\n get b_age(): number {\n return Math.max(...this.units.map((d) => d.b_age));\n }\n\n getUnits(): UnitWithDefinedOverlap<T>[] {\n return assignColumnsToUnitsWithinOverlappingGroup(this);\n }\n}\n\nfunction groupUnitsByMutualOverlap<T extends BaseUnit>(\n units: T[],\n tolerance: number = dt,\n): UnitGroup<T>[] {\n /** Group units within a section that have mutual overlap. */\n const sections = groupUnitsIntoSectionsByOverlap(\n units,\n ColumnAxisType.AGE,\n tolerance,\n );\n return sections.map((d) => {\n return new UnitGroup(d.units);\n });\n}\n\nconst sortByAge = createUnitSorter(ColumnAxisType.AGE);\n\nfunction assignColumnsToUnitsWithinOverlappingGroup<T extends BaseUnit>(\n group: UnitGroup<T>,\n): UnitWithDefinedOverlap<T>[] {\n /** A relatively naïve function to assign columns to units within a mutually overlapping group.\n * This gets the number of columns that would be needed to accommodate the units in the group.\n * It then assigns columns to units in the group based on the number of columns needed, with\n * lower units further to the left.\n */\n\n const sortedUnits = [...group.units].sort((a, b) => b.b_age - a.b_age);\n\n const columns: T[][] = [];\n\n for (const unit of sortedUnits) {\n // Find a column that is not already occupied by an overlapping unit\n let didAddToExistingColumn = false;\n for (const column of columns) {\n const lastUnit = column[column.length - 1];\n if (!unitsOverlap(unit, lastUnit, ColumnAxisType.AGE, dt)) {\n column.push(unit);\n didAddToExistingColumn = true;\n break;\n }\n }\n if (!didAddToExistingColumn) {\n columns.push([unit]);\n }\n }\n\n const units: UnitWithDefinedOverlap<T>[] = columns.flatMap(\n (column, columnIndex) =>\n column.map((unit) => {\n return {\n ...unit,\n overlap: {\n column: columnIndex,\n nColumns: columns.length,\n unitGroup: group,\n },\n };\n }),\n );\n\n return units.toSorted(sortByAge);\n}\n\nexport function preprocessUnits<T extends UnitLong = UnitLong>(\n section: SectionInfo<T>,\n axisType: ColumnAxisType = ColumnAxisType.AGE,\n): ExtUnit[] {\n /** Preprocess units to add overlapping units and columns. */\n let units = section.units;\n\n let tolerance = 0.001; // 1 kyr tolerance for age columns\n if (axisType != ColumnAxisType.AGE) {\n tolerance = 0.01; // 1cm tolerance for height/depth columns\n }\n\n const unitGroups = groupUnitsByMutualOverlap(units, tolerance);\n\n const divisions: any[] = [];\n // Serialize all groups' units to a single array\n for (const group of unitGroups) {\n divisions.push(...group.getUnits());\n }\n\n return divisions.map((d) =>\n enhanceUnitWithClippingPosition(section, d, axisType),\n );\n}\n\nexport function enhanceUnitWithClippingPosition(section, d, axisType) {\n const [b_pos, t_pos] = getUnitHeightRange(d, axisType);\n if (axisType == ColumnAxisType.AGE) {\n if (b_pos > section.b_age) {\n d.b_clip_pos = section.b_age;\n }\n if (t_pos < section.t_age) {\n d.t_clip_pos = section.t_age;\n }\n 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@@ -1,5 +1,5 @@
1
1
  import { preprocessUnits } from './helpers';
2
- import { UnitLong } from '../../../api-types/src/index.ts';
2
+ import { UnitLong } from '@macrostrat/api-types';
3
3
  import { CompositeColumnScale } from './composite-scale';
4
4
  import { PrepareColumnOptions, PreparedColumnData } from './utils';
5
5
  export * from './utils';
@@ -1 +1 @@
1
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+ {"version":3,"file":"index.js","sources":["../../src/prepare-units/index.ts"],"sourcesContent":["import {\n getSectionAgeRange,\n getSectionPosRange,\n groupUnitsIntoSectionsByOverlap,\n groupUnitsIntoSectionsBySectionID,\n mergeOverlappingSections,\n preprocessSectionUnit,\n preprocessUnits,\n} from \"./helpers\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { useMemo } from \"react\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport {\n collapseUnconformitiesByPixelHeight,\n computeSectionHeights,\n finalizeSectionHeights,\n type CompositeColumnScale,\n} from \"./composite-scale\";\nimport {\n agesOverlap,\n MergeSectionsMode,\n PrepareColumnOptions,\n PreparedColumnData,\n unitsOverlap,\n} from \"./utils\";\nimport { SectionInfo } from \"./types\";\n\nexport * from \"./utils\";\nexport * from \"./types\";\nexport { preprocessUnits };\nexport type { CompositeColumnScale };\n\nexport function usePreparedColumnUnits(\n data: UnitLong[],\n options: PrepareColumnOptions,\n): PreparedColumnData {\n /** This function wraps and memoizes all preparation steps for converting\n * an array of units from the /units route to a form ready for usage.\n */\n return useMemo(() => {\n return prepareColumnUnits(data, options);\n }, [data, ...Object.values(options)]);\n}\n\nexport function prepareColumnUnits(\n units: UnitLong[],\n options: PrepareColumnOptions,\n): PreparedColumnData {\n /** Prepare units for rendering into Macrostrat columns */\n\n let { t_age, b_age, t_pos, b_pos } = options;\n\n const {\n mergeSections = MergeSectionsMode.OVERLAPPING,\n axisType,\n unconformityHeight,\n collapseSmallUnconformities = false,\n hybridScale,\n scale,\n } = options;\n\n let _totalHeight: number | null = null;\n\n if (scale != null) {\n // Set t_age and b_age based on scale domain if not already set\n const domain = scale.domain();\n if (axisType == ColumnAxisType.AGE) {\n if (t_age == null) t_age = Math.min(...domain);\n if (b_age == null) b_age = Math.max(...domain);\n _totalHeight = Math.abs(scale(b_age) - scale(t_age));\n } else {\n if (t_pos == null) t_pos = Math.min(...domain);\n if (b_pos == null) b_pos = Math.max(...domain);\n _totalHeight = Math.abs(scale(b_pos) - scale(t_pos));\n }\n }\n\n // Start by ensuring that ages and positions are numbers\n // also set up some values for eODP-style columns\n let units1 = units.map(preprocessSectionUnit);\n\n /** Prototype filtering to age range */\n units1 = units1.filter((d) => {\n // Filter units by t_age and b_age, inclusive\n if (axisType == ColumnAxisType.AGE) {\n return agesOverlap(d, { t_age, b_age });\n } else {\n return unitsOverlap(d, { t_pos, b_pos } as any, axisType);\n }\n });\n\n let mergeMode = mergeSections;\n // if (axisType != ColumnAxisType.AGE) {\n // // For non-age columns, we always merge sections.\n // // This is because the \"groupUnitsIntoSections\" function is not well-defined\n // // for non-age columns.\n // mergeMode = MergeSectionsMode.ALL;\n // }\n\n let sections0: SectionInfo<UnitLong>[];\n if (mergeMode == MergeSectionsMode.ALL) {\n // For the \"merge sections\" mode, we need to create a single section\n const [b_unit_pos, t_unit_pos] = getSectionPosRange(units1, axisType);\n const [b_unit_age, t_unit_age] = getSectionAgeRange(units1);\n sections0 = [\n {\n section_id: 0,\n /**\n * If ages limits are directly specified, use them to define the section bounds.\n * */\n t_pos: t_unit_pos,\n b_pos: b_unit_pos,\n t_age: t_unit_age,\n b_age: b_unit_age,\n units: units1,\n },\n ];\n } else if (axisType == ColumnAxisType.AGE) {\n sections0 = groupUnitsIntoSectionsBySectionID(units1, axisType);\n } else {\n sections0 = groupUnitsIntoSectionsByOverlap(units1, axisType);\n }\n\n // Limit sections to the range specified by t_age/b_age or t_pos/b_pos global options\n for (let section of sections0) {\n if (axisType == ColumnAxisType.AGE) {\n section.t_age = Math.max(section.t_age, t_age ?? -Infinity);\n section.b_age = Math.min(section.b_age, b_age ?? 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@@ -1,5 +1,5 @@
1
- import { UnitLong } from '../../../api-types/src/index.ts';
2
- import { ColumnAxisType } from '../../../column-components/src/index.ts';
1
+ import { UnitLong } from '@macrostrat/api-types';
2
+ import { ColumnAxisType } from '@macrostrat/column-components';
3
3
  import { ScaleContinuousNumeric } from 'd3-scale';
4
4
  export interface ColumnHeightScaleOptions {
5
5
  /** A fixed pixel scale to use for the section (pixels per Myr) */
@@ -1,5 +1,5 @@
1
- import { BaseUnit } from '../../../api-types/src/index.ts';
2
- import { ColumnAxisType } from '../../../column-components/src/index.ts';
1
+ import { BaseUnit } from '@macrostrat/api-types';
2
+ import { ColumnAxisType } from '@macrostrat/column-components';
3
3
  import { ScaleContinuousNumeric } from 'd3-scale';
4
4
  import { ColumnScaleOptions, CompositeColumnData, ExtUnit, PackageLayoutData, StratigraphicPackage } from './types';
5
5
  export interface PrepareColumnOptions extends ColumnScaleOptions {
package/dist/section.cjs CHANGED
@@ -112,8 +112,7 @@ function SectionUnits(props) {
112
112
  ...unitComponentProps,
113
113
  nColumns: Math.min(
114
114
  maxInternalColumns ?? Math.floor(width / 10),
115
- unitComponentProps?.nColumns ?? Infinity,
116
- Math.max(...units.map((d) => d.column)) + 1
115
+ unitComponentProps?.nColumns ?? Infinity
117
116
  )
118
117
  //axisType,
119
118
  };
@@ -1 +1 @@
1
- {"version":3,"file":"section.cjs","sources":["../src/section.ts"],"sourcesContent":["import {\n CompositeUnitsColumn,\n LabelTrackerProvider,\n SectionLabelsColumn,\n} from \"./units\";\nimport { ReactNode, FunctionComponent, useMemo } from \"react\";\nimport {\n Timescale,\n TimescaleOrientation,\n useMacrostratIntervals,\n} from \"@macrostrat/timescale\";\nimport { ColumnAxisType, SVG } from \"@macrostrat/column-components\";\nimport hyper from \"@macrostrat/hyper\";\nimport styles from \"./column.module.sass\";\nimport {\n useMacrostratColumnData,\n useMacrostratUnits,\n MacrostratColumnProvider,\n} from \"./data-provider\";\nimport { useMacrostratBaseURL } from \"@macrostrat/data-provider\";\nimport { Duration } from \"./unit-details\";\nimport { Value } from \"@macrostrat/data-components\";\nimport type { ExtUnit, PackageScaleLayoutData } from \"./prepare-units/types\";\n\nconst h = hyper.styled(styles);\n\nexport interface SectionSharedProps {\n unitComponent?: FunctionComponent<any>;\n unitComponentProps?: any;\n showLabels?: boolean;\n width?: number;\n columnWidth?: number;\n children?: ReactNode;\n showLabelColumn?: boolean;\n axisType?: ColumnAxisType;\n className?: string;\n clipUnits?: boolean;\n maxInternalColumns?: number;\n // Space between sections\n verticalSpacing?: number;\n // Whether to render unconformity labels\n unconformityLabels?: boolean;\n}\n\nexport interface SectionProps extends SectionSharedProps {\n units: ExtUnit[];\n scaleInfo: PackageScaleLayoutData;\n}\n\nexport function SectionsColumn(props: SectionSharedProps) {\n const {\n unconformityLabels = true,\n unitComponent,\n unitComponentProps,\n showLabels = true,\n width = 300,\n columnWidth = 150,\n showLabelColumn = true,\n clipUnits = true,\n maxInternalColumns,\n } = props;\n\n const units = useMacrostratUnits();\n\n // Get a unique key for the column\n const key = units[0]?.col_id;\n\n return h(LabelTrackerProvider, { units, key }, [\n h(SectionUnitsColumn, {\n width: columnWidth,\n unitComponent,\n unitComponentProps,\n showLabels,\n clipUnits,\n maxInternalColumns,\n unconformityLabels,\n }),\n h.if(showLabelColumn)(SectionLabelsColumn, {\n width: width - columnWidth,\n }),\n ]);\n}\n\nfunction SectionUnitsColumn(props: SectionSharedProps) {\n const {\n width,\n showLabels,\n unitComponent,\n unitComponentProps,\n clipUnits,\n maxInternalColumns,\n axisType,\n unconformityLabels = true,\n } = props;\n\n const { sections, totalHeight } = useMacrostratColumnData();\n\n const scaleData: PackageScaleLayoutData[] = sections.map((section) => {\n return section.scaleInfo;\n });\n\n const innerWidth = width - 2;\n\n return h(\"div.section-units-container\", { style: { width } }, [\n h(\n SVG,\n {\n className: \"sections\",\n height: totalHeight,\n innerWidth,\n paddingH: 1,\n },\n sections.map((group) => {\n const { units, scaleInfo, section_id } = group;\n\n const key = `section-${section_id}`;\n return h(\n SectionUnits,\n {\n units,\n scaleInfo,\n key,\n unitComponent,\n unitComponentProps,\n showLabels,\n width: innerWidth,\n clipUnits,\n maxInternalColumns,\n }, // This unconformity is with the section _above_\n );\n }),\n ),\n h.if(unconformityLabels)(UnconformityLabels, {\n width,\n sections: scaleData,\n verbose: false,\n }),\n ]);\n}\n\nfunction SectionUnits(props: SectionProps) {\n // Section with \"squishy\" timescale\n const {\n units,\n scaleInfo,\n unitComponent,\n showLabels = true,\n width = 300,\n unitComponentProps,\n className,\n clipUnits = true,\n maxInternalColumns,\n } = props;\n\n const { domain, pixelScale, pixelHeight, scale } = scaleInfo;\n\n /** Ensure that we can arrange units into the maximum number\n * of columns defined by unitComponentProps, but that we don't\n * use more than necessary.\n */\n const _unitComponentProps = useMemo(() => {\n return {\n ...unitComponentProps,\n nColumns: Math.min(\n maxInternalColumns ?? Math.floor(width / 10),\n unitComponentProps?.nColumns ?? Infinity,\n Math.max(...units.map((d) => d.column)) + 1,\n ),\n //axisType,\n };\n }, [units, unitComponentProps, maxInternalColumns, width]);\n\n const style = {\n \"--section-height\": `${pixelHeight}px`,\n \"--section-width\": `${width}px`,\n };\n\n return h(\n \"g.section\",\n { className, style, transform: `translate(0 ${scaleInfo.offset})` },\n h(\n MacrostratColumnProvider,\n {\n units,\n domain,\n pixelScale, // Actually pixels per myr,\n scale,\n },\n h(CompositeUnitsColumn, {\n width,\n showLabels,\n unitComponent,\n unitComponentProps: _unitComponentProps,\n clipToFrame: clipUnits,\n }),\n ),\n );\n}\n\ninterface CompositeTimescaleProps {\n levels?: [number, number] | number;\n unconformityLabels?: boolean;\n}\n\nexport function CompositeTimescale(props: CompositeTimescaleProps) {\n const { sections } = useMacrostratColumnData();\n const sectionScales = sections.map((section) => {\n return section.scaleInfo;\n });\n\n return h(CompositeTimescaleCore, {\n packages: sectionScales,\n ...props,\n });\n}\n\ntype CompositeTimescaleCoreProps = CompositeTimescaleProps & {\n packages: PackageScaleLayoutData[];\n};\n\nexport function CompositeTimescaleCore(props: CompositeTimescaleCoreProps) {\n const { levels = 3, packages, unconformityLabels = false } = props;\n\n // Use intervals from Macrostrat API\n const baseURL = useMacrostratBaseURL();\n const intervals = useMacrostratIntervals(baseURL);\n\n let _levels: [number, number];\n if (typeof levels === \"number\") {\n // If levels is a number, use the most common starting level\n _levels = [2, Math.max(2 + Math.min(levels, 5) - 1, 1)];\n } else {\n _levels = levels;\n }\n\n const nCols = _levels[1] - _levels[0] + 1;\n\n return h(\"div.timescale-column\", [\n h(\n \"div.timescales\",\n packages.map((group) => {\n const { pixelHeight, paddingTop, key, scale } = group;\n return h(\n \"div.timescale-container\",\n { style: { paddingTop, \"--timescale-level-count\": nCols }, key },\n [\n h(Timescale, {\n 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+ {"version":3,"file":"section.cjs","sources":["../src/section.ts"],"sourcesContent":["import {\n CompositeUnitsColumn,\n LabelTrackerProvider,\n SectionLabelsColumn,\n} from \"./units\";\nimport { ReactNode, FunctionComponent, useMemo } from \"react\";\nimport {\n Timescale,\n TimescaleOrientation,\n useMacrostratIntervals,\n} from \"@macrostrat/timescale\";\nimport { ColumnAxisType, SVG } from \"@macrostrat/column-components\";\nimport hyper from \"@macrostrat/hyper\";\nimport styles from \"./column.module.sass\";\nimport {\n useMacrostratColumnData,\n useMacrostratUnits,\n MacrostratColumnProvider,\n} from \"./data-provider\";\nimport { useMacrostratBaseURL } from \"@macrostrat/data-provider\";\nimport { Duration } from \"./unit-details\";\nimport { Value } from \"@macrostrat/data-components\";\nimport type { ExtUnit, PackageScaleLayoutData } from \"./prepare-units/types\";\n\nconst h = hyper.styled(styles);\n\nexport interface SectionSharedProps {\n unitComponent?: FunctionComponent<any>;\n unitComponentProps?: any;\n showLabels?: boolean;\n width?: number;\n columnWidth?: number;\n children?: ReactNode;\n showLabelColumn?: boolean;\n axisType?: ColumnAxisType;\n className?: string;\n clipUnits?: boolean;\n maxInternalColumns?: number;\n // Space between sections\n verticalSpacing?: number;\n // Whether to render unconformity labels\n unconformityLabels?: boolean;\n}\n\nexport interface SectionProps extends SectionSharedProps {\n units: ExtUnit[];\n scaleInfo: PackageScaleLayoutData;\n}\n\nexport function SectionsColumn(props: SectionSharedProps) {\n const {\n unconformityLabels = true,\n unitComponent,\n unitComponentProps,\n showLabels = true,\n width = 300,\n columnWidth = 150,\n showLabelColumn = true,\n clipUnits = true,\n maxInternalColumns,\n } = props;\n\n const units = useMacrostratUnits();\n\n // Get a unique key for the column\n const key = units[0]?.col_id;\n\n return h(LabelTrackerProvider, { units, key }, [\n h(SectionUnitsColumn, {\n width: columnWidth,\n unitComponent,\n unitComponentProps,\n showLabels,\n clipUnits,\n maxInternalColumns,\n unconformityLabels,\n }),\n h.if(showLabelColumn)(SectionLabelsColumn, {\n width: width - columnWidth,\n }),\n ]);\n}\n\nfunction SectionUnitsColumn(props: SectionSharedProps) {\n const {\n width,\n showLabels,\n unitComponent,\n unitComponentProps,\n clipUnits,\n maxInternalColumns,\n axisType,\n unconformityLabels = true,\n } = props;\n\n const { sections, totalHeight } = useMacrostratColumnData();\n\n const scaleData: PackageScaleLayoutData[] = sections.map((section) => {\n return section.scaleInfo;\n });\n\n const innerWidth = width - 2;\n\n return h(\"div.section-units-container\", { style: { width } }, [\n h(\n SVG,\n {\n className: \"sections\",\n height: totalHeight,\n innerWidth,\n paddingH: 1,\n },\n sections.map((group) => {\n const { units, scaleInfo, section_id } = group;\n\n const key = `section-${section_id}`;\n return h(\n SectionUnits,\n {\n units,\n scaleInfo,\n key,\n unitComponent,\n unitComponentProps,\n showLabels,\n width: innerWidth,\n clipUnits,\n maxInternalColumns,\n }, // This unconformity is with the section _above_\n );\n }),\n ),\n h.if(unconformityLabels)(UnconformityLabels, {\n width,\n sections: scaleData,\n verbose: false,\n }),\n ]);\n}\n\nfunction SectionUnits(props: SectionProps) {\n // Section with \"squishy\" timescale\n const {\n units,\n scaleInfo,\n unitComponent,\n showLabels = true,\n width = 300,\n unitComponentProps,\n className,\n clipUnits = true,\n maxInternalColumns,\n } = props;\n\n const { domain, pixelScale, pixelHeight, scale } = scaleInfo;\n\n /** Ensure that we can arrange units into the maximum number\n * of columns defined by unitComponentProps, but that we don't\n * use more than necessary.\n */\n const _unitComponentProps = useMemo(() => {\n return {\n ...unitComponentProps,\n nColumns: Math.min(\n maxInternalColumns ?? 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Infinity,\n ),\n //axisType,\n };\n }, [units, unitComponentProps, maxInternalColumns, width]);\n\n const style = {\n \"--section-height\": `${pixelHeight}px`,\n \"--section-width\": `${width}px`,\n };\n\n return h(\n \"g.section\",\n { className, style, transform: `translate(0 ${scaleInfo.offset})` },\n h(\n MacrostratColumnProvider,\n {\n units,\n domain,\n pixelScale, // Actually pixels per myr,\n scale,\n },\n h(CompositeUnitsColumn, {\n width,\n showLabels,\n unitComponent,\n unitComponentProps: _unitComponentProps,\n clipToFrame: clipUnits,\n }),\n ),\n );\n}\n\ninterface CompositeTimescaleProps {\n levels?: [number, number] | number;\n unconformityLabels?: boolean;\n}\n\nexport function CompositeTimescale(props: CompositeTimescaleProps) {\n const { sections } = useMacrostratColumnData();\n const sectionScales = sections.map((section) => {\n return section.scaleInfo;\n });\n\n return h(CompositeTimescaleCore, {\n packages: sectionScales,\n ...props,\n });\n}\n\ntype 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package/dist/section.d.ts CHANGED
@@ -1,5 +1,5 @@
1
1
  import { ReactNode, FunctionComponent } from 'react';
2
- import { ColumnAxisType } from '../../column-components/src/index.ts';
2
+ import { ColumnAxisType } from '@macrostrat/column-components';
3
3
  import { ExtUnit, PackageScaleLayoutData } from './prepare-units/types';
4
4
  export interface SectionSharedProps {
5
5
  unitComponent?: FunctionComponent<any>;
package/dist/section.js CHANGED
@@ -108,8 +108,7 @@ function SectionUnits(props) {
108
108
  ...unitComponentProps,
109
109
  nColumns: Math.min(
110
110
  maxInternalColumns ?? Math.floor(width / 10),
111
- unitComponentProps?.nColumns ?? Infinity,
112
- Math.max(...units.map((d) => d.column)) + 1
111
+ unitComponentProps?.nColumns ?? Infinity
113
112
  )
114
113
  //axisType,
115
114
  };
@@ -1 +1 @@
1
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