@macrostrat/column-views 3.12.1 → 3.13.0

package/dist/prepare-units/helpers.js.map

@@ -1 +1 @@
-{"version":3,"file":"helpers.js","sources":["../../src/prepare-units/helpers.ts"],"sourcesContent":["import type { BaseUnit, UnitLong } from \"@macrostrat/api-types\";\nimport { group } from \"d3-array\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport {\n  createUnitSorter,\n  ensureArray,\n  ensureRealFloat,\n  getUnitHeightRange,\n  unitsOverlap,\n} from \"./utils\";\nimport {\n  AgeRangeRelationship,\n  compareAgeRanges,\n  mergeAgeRanges,\n  MergeMode,\n} from \"@macrostrat/stratigraphy-utils\";\nimport type { ExtUnit, SectionInfo, StratigraphicPackage } from \"./types\";\n\nconst dt = 0.001;\n\nexport type UnitWithLayoutParameters<T extends BaseUnit> = T & {\n  layout: UnitLayoutData<T>;\n};\n\nexport type UnitWithLayoutHints<T extends BaseUnit> = T & {\n  layoutHints?: UnitLayoutHints;\n};\n\ninterface UnitLayoutInfo {\n  column: number;\n  nColumns: number;\n}\n\ntype UnitLayoutHints = Partial<UnitLayoutInfo>;\n\ntype UnitLayoutData<T extends BaseUnit> = UnitLayoutInfo & {\n  totalColumns: number;\n  unitGroup: UnitGroup<T>;\n};\n\nclass UnitGroup<T extends BaseUnit> implements StratigraphicPackage {\n  units: T[];\n  axisType: ColumnAxisType;\n\n  constructor(units: T[], axisType: ColumnAxisType = ColumnAxisType.AGE) {\n    this.units = units;\n    this.axisType = axisType;\n  }\n\n  get t_age(): number {\n    return Math.min(...this.units.map((d) => d.t_age));\n  }\n\n  get b_age(): number {\n    return Math.max(...this.units.map((d) => d.b_age));\n  }\n\n  getUnits(): UnitWithLayoutParameters<T>[] {\n    return assignColumnsToUnitsWithinOverlappingGroup(this);\n  }\n}\n\nfunction groupUnitsByMutualOverlap<T extends BaseUnit>(\n  units: T[],\n  tolerance: number = dt,\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): UnitGroup<T>[] {\n  /** Group units within a section that have mutual overlap. */\n\n  const sections = groupUnitsIntoSectionsByOverlap(units, axisType, tolerance);\n\n  return sections.map((d) => {\n    return new UnitGroup(d.units, axisType);\n  });\n}\n\nconst sortByAge = createUnitSorter(ColumnAxisType.AGE);\n\nfunction assignColumnsToUnitsWithinOverlappingGroup<T extends BaseUnit>(\n  group: UnitGroup<UnitWithLayoutHints<T>>,\n): UnitWithLayoutParameters<T>[] {\n  /** A relatively naïve function to assign columns to units within a mutually overlapping group.\n   * This gets the number of columns that would be needed to accommodate the units in the group.\n   * It then assigns columns to units in the group based on the number of columns needed, with\n   * lower units further to the left.\n   */\n\n  const sortedUnits = [...group.units].sort(createUnitSorter(group.axisType));\n\n  const columns: T[][] = [];\n\n  let nColumns = 1;\n\n  for (const unit of sortedUnits) {\n    let startIndex = 0;\n    let endIndex = 0;\n    // Find a column that is not already occupied by an overlapping unit\n    const colHint = unit.layoutHints?.column;\n    if (colHint != null) {\n      columns[colHint] ??= [];\n      columns[colHint].push(unit);\n      continue;\n    }\n    let didAddToExistingColumn = false;\n\n    for (const column of columns) {\n      const lastUnit = column[column.length - 1];\n      if (!unitsOverlap(unit, lastUnit, group.axisType, dt)) {\n        column.push(unit);\n        didAddToExistingColumn = true;\n        break;\n      }\n    }\n    if (!didAddToExistingColumn) {\n      columns.push([unit]);\n    }\n  }\n\n  const units: UnitWithLayoutParameters<T>[] = columns.flatMap(\n    (column, columnIndex) =>\n      column.map((unit) => {\n        return {\n          ...unit,\n          layout: {\n            column: columnIndex,\n            nColumns: 1,\n            totalColumns: columns.length,\n            unitGroup: group,\n          },\n        };\n      }),\n  );\n\n  return units.toSorted(sortByAge);\n}\n\nexport function preprocessUnits<T extends UnitLong = UnitLong>(\n  section: SectionInfo<T>,\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): ExtUnit[] {\n  /** Preprocess units to add overlapping units and columns. */\n  let units = section.units;\n\n  let tolerance = 0.001; // 1 kyr tolerance for age columns\n  if (axisType != ColumnAxisType.AGE) {\n    tolerance = 0.01; // 1cm tolerance for height/depth columns\n  }\n\n  const unitGroups = groupUnitsByMutualOverlap(units, tolerance, axisType);\n\n  const divisions: any[] = [];\n  // Serialize all groups' units to a single array\n  for (const group of unitGroups) {\n    divisions.push(...group.getUnits());\n  }\n\n  return divisions.map((d) =>\n    enhanceUnitWithClippingPosition(section, d, axisType),\n  );\n}\n\nexport function enhanceUnitWithClippingPosition(section, d, axisType) {\n  const [b_pos, t_pos] = getUnitHeightRange(d, axisType);\n  if (axisType == ColumnAxisType.AGE) {\n    if (b_pos > section.b_age) {\n      d.b_clip_pos = section.b_age;\n    }\n    if (t_pos < section.t_age) {\n      d.t_clip_pos = section.t_age;\n    }\n  }\n  if (axisType == ColumnAxisType.DEPTH) {\n    if (b_pos > section.b_pos) {\n      d.b_clip_pos = section.b_pos;\n    }\n    if (t_pos < section.t_pos) {\n      d.t_clip_pos = section.t_pos;\n    }\n  }\n  return d;\n}\n\nexport function groupUnitsIntoSectionsBySectionID<T extends UnitLong>(\n  units: T[],\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): SectionInfo<T>[] {\n  /** Group units into sections by section_id.\n   * This works for large-scale Macrostrat columns, where units are grouped by section_id.\n   * */\n  let groups = Array.from(group(units, (d) => d.section_id));\n  const unitComparator = createUnitSorter(axisType);\n\n  const groups1 = groups.map(([section_id, sectionUnits]) => {\n    const [b_age, t_age] = getSectionAgeRange(sectionUnits);\n    const [b_pos, t_pos] = getSectionPosRange(sectionUnits, axisType);\n\n    // sort units by position\n    sectionUnits.sort(unitComparator);\n    return { section_id, t_age, b_age, b_pos, t_pos, units: sectionUnits };\n  });\n  // Sort sections by increasing top age, then increasing bottom age.\n  // Sections have no relative ordinal position other than age...\n  const compareSections = createUnitSorter(axisType) as (\n    a: StratigraphicPackage,\n    b: StratigraphicPackage,\n  ) => number;\n  groups1.sort(compareSections);\n  return groups1;\n}\n\ninterface WorkingSection {\n  units: UnitLong[];\n  // Position or age\n  heightRange: [number, number];\n}\n\nexport function groupUnitsIntoSectionsByOverlap<T extends BaseUnit>(\n  units: T[],\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n  tolerance: number = dt,\n): SectionInfo<T>[] {\n  /** Group units into sections by overlap.\n   * This creates \"synthetic\" sections that correspond to packages bound by scale gaps.\n   * This is most useful in the height and depth domains, where gaps (e.g., missing core) are\n   * common.\n   * */\n  // Start with each unit as its own \"section\", and progressively merge...\n  const sectionList: WorkingSection[] = [];\n\n  const initialSections: WorkingSection[] = units.map((unit) => {\n    return {\n      units: [unit],\n      heightRange: getUnitHeightRange(unit, axisType),\n    };\n  });\n\n  const isOverlapping = (a: WorkingSection, b: WorkingSection) => {\n    const res = compareAgeRanges(a.heightRange, b.heightRange, tolerance);\n    return res !== AgeRangeRelationship.Disjoint;\n  };\n\n  const mergeSections = (a: WorkingSection, b: WorkingSection) => {\n    return {\n      units: [...a.units, ...b.units],\n      heightRange: mergeAgeRanges(\n        [a.heightRange, b.heightRange],\n        MergeMode.Outer,\n      ),\n    };\n  };\n\n  // Merge overlapping sections progressively until no more merges are possible\n  let finalSectionList = initialSections;\n\n  while (true) {\n    let merged = false;\n    const nextSections: WorkingSection[] = [];\n\n    for (const section of finalSectionList) {\n      if (nextSections.length === 0) {\n        nextSections.push(section);\n      } else {\n        const lastSection = nextSections[nextSections.length - 1];\n        if (isOverlapping(section, lastSection)) {\n          // Merge with the last section\n          nextSections[nextSections.length - 1] = mergeSections(\n            lastSection,\n            section,\n          );\n          merged = true;\n        } else {\n          nextSections.push(section);\n        }\n      }\n    }\n\n    finalSectionList = nextSections;\n\n    // Stop when no more merges occurred in this pass\n    if (!merged) {\n      break;\n    }\n  }\n\n  return finalSectionList.map((section, i) => {\n    const [b_age, t_age] = getSectionAgeRange(section.units);\n    const [b_pos, t_pos] = getSectionPosRange(section.units, axisType);\n    return {\n      // Negative section IDs are used to indicate that these are synthetic sections\n      section_id: -i,\n      t_age,\n      b_age,\n      t_pos,\n      b_pos,\n      units: section.units as T[],\n    };\n  });\n}\n\nexport function getSectionPosRange(\n  units: BaseUnit[],\n  axisType: ColumnAxisType,\n): [number, number] {\n  /** Get the overall position range of a set of units. */\n  const t_positions = units.map((d) => {\n    switch (axisType) {\n      case ColumnAxisType.AGE:\n        return d.t_age;\n      case ColumnAxisType.DEPTH:\n      case ColumnAxisType.HEIGHT:\n      case ColumnAxisType.ORDINAL:\n        return d.t_pos;\n      default:\n        throw new Error(`Unknown axis type: ${axisType}`);\n    }\n  });\n  const b_positions = units.map((d) => {\n    switch (axisType) {\n      case ColumnAxisType.AGE:\n        return d.b_age;\n      case ColumnAxisType.DEPTH:\n      case ColumnAxisType.HEIGHT:\n      case ColumnAxisType.ORDINAL:\n        return d.b_pos;\n      default:\n        throw new Error(`Unknown axis type: ${axisType}`);\n    }\n  });\n  if (axisType == ColumnAxisType.AGE || axisType == ColumnAxisType.DEPTH) {\n    return [Math.max(...b_positions), Math.min(...t_positions)];\n  } else {\n    return [Math.min(...b_positions), Math.max(...t_positions)];\n  }\n}\n\nexport function getSectionAgeRange(units: BaseUnit[]): [number, number] {\n  /** Get the overall age range of a set of units. */\n  return getSectionPosRange(units, ColumnAxisType.AGE);\n}\n\nexport function mergeOverlappingSections<T extends UnitLong>(\n  sections: SectionInfo<T>[],\n): SectionInfo<T>[] {\n  /** Columns can have sections that overlap in time. Here, we merge overlapping\n   * sections into a single section to correctly render gap-bound packages.\n   */\n  const [firstSection, ...rest] = sections;\n  const newSections = [firstSection];\n  for (const section of rest) {\n    const lastSection = newSections[newSections.length - 1];\n    if (\n      lastSection.b_age < section.t_age ||\n      lastSection.t_age > section.b_age\n    ) {\n      // No overlap, add the section as normal\n      newSections.push(section);\n      continue;\n    }\n\n    // Overlap, merge the sections\n    lastSection.section_id = [\n      ...ensureArray(lastSection.section_id),\n      ...ensureArray(section.section_id),\n    ];\n    lastSection.units.push(...section.units);\n    lastSection.b_age = Math.max(lastSection.b_age, section.b_age);\n    lastSection.t_age = Math.min(lastSection.t_age, section.t_age);\n  }\n  return newSections;\n}\n\nexport function preprocessSectionUnit(unit: UnitLong): UnitLong {\n  /** Preprocess a single unit for a 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1];\n      if (!unitsOverlap(unit, lastUnit, group.axisType, dt)) {\n        column.push(unit);\n        didAddToExistingColumn = true;\n        break;\n      }\n    }\n    if (!didAddToExistingColumn) {\n      columns.push([unit]);\n    }\n  }\n\n  const units: UnitWithLayoutParameters<T>[] = columns.flatMap(\n    (column, columnIndex) =>\n      column.map((unit) => {\n        return {\n          ...unit,\n          layout: {\n            column: columnIndex,\n            nColumns: 1,\n            totalColumns: columns.length,\n            unitGroup: group,\n          },\n        };\n      }),\n  );\n\n  return units.toSorted(sortByAge);\n}\n\nexport function preprocessUnits<T extends UnitLong = UnitLong>(\n  section: SectionInfo<T>,\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): ExtUnit[] {\n  /** Preprocess units to add overlapping units and columns. */\n  let units = section.units;\n\n  let tolerance = 0.001; // 1 kyr tolerance for age columns\n  if (axisType != ColumnAxisType.AGE) {\n    tolerance = 0.01; // 1cm tolerance for height/depth columns\n  }\n\n  const unitGroups = groupUnitsByMutualOverlap(units, tolerance, axisType);\n\n  const divisions: any[] = [];\n  // Serialize all groups' units to a single array\n  for (const group of unitGroups) {\n    divisions.push(...group.getUnits());\n  }\n\n  return divisions.map((d) =>\n    enhanceUnitWithClippingPosition(section, d, axisType),\n  );\n}\n\nexport function enhanceUnitWithClippingPosition(section, d, axisType) {\n  const [b_pos, t_pos] = getUnitHeightRange(d, axisType);\n  if (axisType == ColumnAxisType.AGE) {\n    if (b_pos > section.b_age) {\n      d.b_clip_pos = section.b_age;\n    }\n    if (t_pos < section.t_age) {\n      d.t_clip_pos = section.t_age;\n    }\n  }\n  if (axisType == ColumnAxisType.DEPTH) {\n    if (b_pos > section.b_pos) {\n      d.b_clip_pos = section.b_pos;\n    }\n    if (t_pos < section.t_pos) {\n      d.t_clip_pos = section.t_pos;\n    }\n  }\n  return d;\n}\n\nexport function groupUnitsIntoSectionsBySectionID<T extends UnitLong>(\n  units: T[],\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): SectionInfo<T>[] {\n  /** Group units into sections by section_id.\n   * This works for large-scale Macrostrat columns, where units are grouped by section_id.\n   * */\n  let groups = Array.from(group(units, (d) => d.section_id));\n  const unitComparator = createUnitSorter(axisType);\n\n  const groups1 = groups.map(([section_id, sectionUnits]) => {\n    const [b_age, t_age] = getSectionAgeRange(sectionUnits);\n    const [b_pos, t_pos] = getSectionPosRange(sectionUnits, axisType);\n\n    // sort units by position\n    sectionUnits.sort(unitComparator);\n    return { section_id, t_age, b_age, b_pos, t_pos, units: sectionUnits };\n  });\n  // Sort sections by increasing top age, then increasing bottom age.\n  // Sections have no relative ordinal position other than age...\n  const compareSections = createUnitSorter(axisType) as (\n    a: StratigraphicPackage,\n    b: StratigraphicPackage,\n  ) => number;\n  groups1.sort(compareSections);\n  return groups1;\n}\n\ninterface WorkingSection {\n  units: UnitLong[];\n  // Position or age\n  heightRange: [number, number];\n}\n\nexport function groupUnitsIntoSectionsByOverlap<T extends BaseUnit>(\n  units: T[],\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n  tolerance: number = dt,\n): SectionInfo<T>[] {\n  /** Group units into sections by overlap.\n   * This creates \"synthetic\" sections that correspond to packages bound by scale gaps.\n   * This is most useful in the height and depth domains, where gaps (e.g., missing core) are\n   * common.\n   * */\n  // Start with each unit as its own \"section\", and progressively merge...\n  const sectionList: WorkingSection[] = [];\n\n  const initialSections: WorkingSection[] = units.map((unit) => {\n    return {\n      units: [unit],\n      heightRange: getUnitHeightRange(unit, axisType),\n    };\n  });\n\n  const isOverlapping = (a: WorkingSection, b: WorkingSection) => {\n    const res = compareAgeRanges(a.heightRange, b.heightRange, tolerance);\n    return res !== AgeRangeRelationship.Disjoint;\n  };\n\n  const mergeSections = (a: WorkingSection, b: WorkingSection) => {\n    return {\n      units: [...a.units, ...b.units],\n      heightRange: mergeAgeRanges(\n        [a.heightRange, b.heightRange],\n        MergeMode.Outer,\n      ),\n    };\n  };\n\n  // Merge overlapping sections progressively until no more merges are possible\n  let finalSectionList = initialSections;\n\n  while (true) {\n    let merged = false;\n    const nextSections: WorkingSection[] = [];\n\n    for (const section of finalSectionList) {\n      if (nextSections.length === 0) {\n        nextSections.push(section);\n      } else {\n        const lastSection = nextSections[nextSections.length - 1];\n        if (isOverlapping(section, lastSection)) {\n          // Merge with the last section\n          nextSections[nextSections.length - 1] = mergeSections(\n            lastSection,\n            section,\n          );\n          merged = true;\n        } else {\n          nextSections.push(section);\n        }\n      }\n    }\n\n    finalSectionList = nextSections;\n\n    // Stop when no more merges occurred in this pass\n    if (!merged) {\n      break;\n    }\n  }\n\n  const s1 = finalSectionList.map((section, i) => {\n    const [b_age, t_age] = getSectionAgeRange(section.units);\n    const [b_pos, t_pos] = getSectionPosRange(section.units, axisType);\n    return {\n      // Negative section IDs are used to indicate that these are synthetic sections\n      section_id: -i,\n      t_age,\n      b_age,\n      t_pos,\n      b_pos,\n      units: section.units as T[],\n    };\n  });\n\n  return sortUnits(s1, axisType);\n}\n\nexport function getSectionPosRange(\n  units: BaseUnit[],\n  axisType: ColumnAxisType,\n): [number, number] {\n  /** Get the overall position range of a set of units. */\n  const t_positions = units.map((d) => {\n    switch (axisType) {\n      case ColumnAxisType.AGE:\n        return d.t_age;\n      case ColumnAxisType.DEPTH:\n      case ColumnAxisType.HEIGHT:\n      case ColumnAxisType.ORDINAL:\n        return d.t_pos;\n      default:\n        throw new Error(`Unknown axis type: ${axisType}`);\n    }\n  });\n  const b_positions = units.map((d) => {\n    switch (axisType) {\n      case ColumnAxisType.AGE:\n        return d.b_age;\n      case ColumnAxisType.DEPTH:\n      case ColumnAxisType.HEIGHT:\n      case ColumnAxisType.ORDINAL:\n        return d.b_pos;\n      default:\n        throw new Error(`Unknown axis type: ${axisType}`);\n    }\n  });\n  if (axisType == ColumnAxisType.AGE || axisType == ColumnAxisType.DEPTH) {\n    return [Math.max(...b_positions), Math.min(...t_positions)];\n  } else {\n    return [Math.min(...b_positions), Math.max(...t_positions)];\n  }\n}\n\nexport function getSectionAgeRange(units: BaseUnit[]): [number, number] {\n  /** Get the overall age range of a set of units. */\n  return getSectionPosRange(units, ColumnAxisType.AGE);\n}\n\nfunction forEachSection(fn, sections, ...args) {\n  return sections.map((section) => {\n    return {\n      ...section,\n      units: fn(section.units, ...args),\n    };\n  });\n}\n\nfunction sortUnits(units: BaseUnit[], axisType: ColumnAxisType) {\n  return units.sort((a, b) => {\n    if (\n      axisType === ColumnAxisType.HEIGHT &&\n      b.t_pos !== undefined &&\n      a.t_pos !== undefined\n    ) {\n      return b.t_pos - 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Here, we merge overlapping\n   * sections into a single section to correctly render gap-bound packages.\n   */\n  const [firstSection, ...rest] = sections;\n  const newSections = [firstSection];\n  for (const section of rest) {\n    const lastSection = newSections[newSections.length - 1];\n    if (\n      lastSection.b_age < section.t_age ||\n      lastSection.t_age > section.b_age\n    ) {\n      // No overlap, add the section as normal\n      newSections.push(section);\n      continue;\n    }\n\n    // Overlap, merge the sections\n    lastSection.section_id = [\n      ...ensureArray(lastSection.section_id),\n      ...ensureArray(section.section_id),\n    ];\n    lastSection.units.push(...section.units);\n    lastSection.b_age = Math.max(lastSection.b_age, section.b_age);\n    lastSection.t_age = Math.min(lastSection.t_age, section.t_age);\n  }\n  return newSections;\n}\n\nexport function preprocessSectionUnit(unit: UnitLong): UnitLong {\n  /** Preprocess a single unit for a 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package/dist/prepare-units/index.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"index.cjs","sources":["../../src/prepare-units/index.ts"],"sourcesContent":["import {\n  getSectionAgeRange,\n  getSectionPosRange,\n  groupUnitsIntoSectionsByOverlap,\n  groupUnitsIntoSectionsBySectionID,\n  mergeOverlappingSections,\n  preprocessSectionUnit,\n  preprocessUnits,\n  UnitWithLayoutHints,\n} from \"./helpers\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { useMemo } from \"react\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport {\n  collapseUnconformitiesByPixelHeight,\n  computeSectionHeights,\n  finalizeSectionHeights,\n  padWindowByPixels,\n  resolveWindowScales,\n  trimSectionsToWindow,\n  type CompositeColumnScale,\n} from \"./composite-scale\";\nimport {\n  agesOverlap,\n  MergeSectionsMode,\n  PrepareColumnOptions,\n  PreparedColumnData,\n  unitsOverlap,\n} from \"./utils\";\nimport { type ColumnHeightScaleOptions, SectionInfo } from \"./types\";\n\nexport * from \"./utils\";\nexport * from \"./types\";\nexport * from \"./density\";\nexport { preprocessUnits };\nexport type { CompositeColumnScale };\n\nexport function usePreparedColumnUnits(\n  data: UnitLong[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** This function wraps and memoizes all preparation steps for converting\n   * an array of units from the /units route to a form ready for usage.\n   */\n  return useMemo(() => {\n    return prepareColumnUnits(data, options);\n  }, [data, ...Object.values(options)]);\n}\n\nexport function prepareColumnUnits(\n  units: UnitWithLayoutHints<UnitLong>[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** Prepare units for rendering into Macrostrat columns */\n\n  let { t_age, b_age, t_pos, b_pos } = options;\n\n  const {\n    mergeSections = MergeSectionsMode.OVERLAPPING,\n    axisType,\n    unconformityHeight,\n    collapseSmallUnconformities = false,\n    hybridScale,\n    scale,\n    windowPadding = 0,\n  } = options;\n\n  let _totalHeight: number | null = null;\n\n  if (scale != null) {\n    // Set t_age and b_age based on scale domain if not already set\n    const domain = scale.domain();\n    if (axisType == ColumnAxisType.AGE) {\n      if (t_age == null) t_age = Math.min(...domain);\n      if (b_age == null) b_age = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_age) - scale(t_age));\n    } else {\n      if (t_pos == null) t_pos = Math.min(...domain);\n      if (b_pos == null) b_pos = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_pos) - scale(t_pos));\n    }\n  }\n\n  /** Age columns lay every section out at its full extent and clip to the\n   * window at the end (see below), so that a section abutting the window is\n   * sized by its own content rather than by the sliver that survives the clip.\n   * Hybrid and externally-supplied scales build their own mapping and can't be\n   * re-derived that way, so they keep the original clip-then-lay-out path. */\n  const clipBeforeLayout =\n    axisType != ColumnAxisType.AGE || hybridScale != null || scale != null;\n\n  // Start by ensuring that ages and positions are numbers\n  // also set up some values for eODP-style columns\n  let units1 = units.map(preprocessSectionUnit);\n\n  /** A bound that isn't set doesn't bound anything. 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+{"version":3,"file":"index.cjs","sources":["../../src/prepare-units/index.ts"],"sourcesContent":["import {\n  getSectionAgeRange,\n  getSectionPosRange,\n  groupUnitsIntoSectionsByOverlap,\n  groupUnitsIntoSectionsBySectionID,\n  mergeOverlappingSections,\n  preprocessSectionUnit,\n  preprocessUnits,\n  UnitWithLayoutHints,\n} from \"./helpers\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { useMemo } from \"react\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport {\n  collapseUnconformitiesByPixelHeight,\n  computeSectionHeights,\n  finalizeSectionHeights,\n  padWindowByPixels,\n  resolveWindowScales,\n  trimSectionsToWindow,\n  type CompositeColumnScale,\n} from \"./composite-scale\";\nimport {\n  agesOverlap,\n  MergeSectionsMode,\n  PrepareColumnOptions,\n  PreparedColumnData,\n  unitsOverlap,\n} from \"./utils\";\nimport { type ColumnHeightScaleOptions, SectionInfo } from \"./types\";\n\nexport * from \"./utils\";\nexport * from \"./types\";\nexport * from \"./density\";\nexport { preprocessUnits };\nexport type { CompositeColumnScale };\n\nexport function usePreparedColumnUnits(\n  data: UnitLong[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** This function wraps and memoizes all preparation steps for converting\n   * an array of units from the /units route to a form ready for usage.\n   */\n  return useMemo(() => {\n    return prepareColumnUnits(data, options);\n  }, [data, ...Object.values(options)]);\n}\n\nexport function prepareColumnUnits(\n  units: UnitWithLayoutHints<UnitLong>[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** Prepare units for rendering into Macrostrat columns */\n\n  let { t_age, b_age, t_pos, b_pos } = options;\n\n  const {\n    mergeSections = MergeSectionsMode.OVERLAPPING,\n    axisType,\n    unconformityHeight,\n    collapseSmallUnconformities = false,\n    hybridScale,\n    scale,\n    windowPadding = 0,\n  } = options;\n\n  let _totalHeight: number | null = null;\n\n  if (scale != null) {\n    // Set t_age and b_age based on scale domain if not already set\n    const domain = scale.domain();\n    if (axisType == ColumnAxisType.AGE) {\n      if (t_age == null) t_age = Math.min(...domain);\n      if (b_age == null) b_age = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_age) - scale(t_age));\n    } else {\n      if (t_pos == null) t_pos = Math.min(...domain);\n      if (b_pos == null) b_pos = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_pos) - scale(t_pos));\n    }\n  }\n\n  /** Age columns lay every section out at its full extent and clip to the\n   * window at the end (see below), so that a section abutting the window is\n   * sized by its own content rather than by the sliver that survives the clip.\n   * Hybrid and externally-supplied scales build their own mapping and can't be\n   * re-derived that way, so they keep the original clip-then-lay-out path. */\n  const clipBeforeLayout =\n    axisType != ColumnAxisType.AGE || hybridScale != null || scale != null;\n\n  // Start by ensuring that ages and positions are numbers\n  // also set up some values for eODP-style columns\n  let units1 = units.map(preprocessSectionUnit);\n\n  /** A bound that isn't set doesn't bound anything. Passing `null` for one is\n   * the ordinary way to say \"no window\", and comparing against it as though\n   * it were an age would throw every unit out. */\n  const window = {\n    t_age: t_age ?? -Infinity,\n    b_age: b_age ?? Infinity,\n    t_pos: t_pos ?? -Infinity,\n    b_pos: b_pos ?? Infinity,\n  };\n  const isWindowed =\n    axisType == ColumnAxisType.AGE\n      ? t_age != null || b_age != null\n      : t_pos != null || b_pos != null;\n\n  if (clipBeforeLayout && isWindowed) {\n    /** Prototype filtering to age range */\n    units1 = units1.filter((d) => {\n      // Filter units by t_age and b_age, inclusive\n      if (axisType == ColumnAxisType.AGE) {\n        return agesOverlap(d, window);\n      } else {\n        return unitsOverlap(d, window as any, axisType);\n      }\n    });\n  }\n\n  let mergeMode = mergeSections;\n  // if (axisType != ColumnAxisType.AGE) {\n  //   // For non-age columns, we always merge sections.\n  //   // This is because the \"groupUnitsIntoSections\" function is not well-defined\n  //   // for non-age columns.\n  //   mergeMode = MergeSectionsMode.ALL;\n  // }\n\n  let sections0: SectionInfo<UnitLong>[];\n  if (mergeMode == MergeSectionsMode.ALL) {\n    // For the \"merge sections\" mode, we need to create a single section\n    const [b_unit_pos, t_unit_pos] = getSectionPosRange(units1, axisType);\n    const [b_unit_age, t_unit_age] = getSectionAgeRange(units1);\n    sections0 = [\n      {\n        section_id: 0,\n        /**\n         * If ages limits are directly specified, use them to define the section bounds.\n         * */\n        t_pos: t_unit_pos,\n        b_pos: b_unit_pos,\n        t_age: t_unit_age,\n        b_age: b_unit_age,\n        units: units1,\n      },\n    ];\n  } else if (axisType == ColumnAxisType.AGE) {\n    sections0 = groupUnitsIntoSectionsBySectionID(units1, axisType);\n  } else {\n    sections0 = groupUnitsIntoSectionsByOverlap(units1, axisType);\n  }\n\n  // Limit sections to the range specified by t_age/b_age or t_pos/b_pos global options\n  for (let section of clipBeforeLayout ? sections0 : []) {\n    if (axisType == ColumnAxisType.AGE) {\n      section.t_age = Math.max(section.t_age, t_age ?? -Infinity);\n      section.b_age = Math.min(section.b_age, b_age ?? Infinity);\n    } else if (axisType == ColumnAxisType.DEPTH) {\n      section.t_pos = Math.max(section.t_pos, t_pos ?? -Infinity);\n      section.b_pos = Math.min(section.b_pos, b_pos ?? Infinity);\n    } else if (axisType == ColumnAxisType.HEIGHT) {\n      section.t_pos = Math.max(section.t_pos, t_pos ?? -Infinity);\n      section.b_pos = Math.min(section.b_pos, b_pos ?? Infinity);\n    }\n  }\n\n  /** Merging overlapping sections really only makes sense for age/height/depth\n   * columns. Ordinal columns are numbered by section so merging them\n   * results in collisions.\n   */\n  let sections = sections0;\n  if (\n    mergeSections == MergeSectionsMode.OVERLAPPING &&\n    axisType == ColumnAxisType.AGE\n  ) {\n    sections = mergeOverlappingSections(sections);\n  }\n  // Filter out undefined sections just in case\n  sections = sections.filter((d) => d != null);\n\n  // SCALES\n\n  /** The window we've been asked to render. Unit density is derived from what\n   * it shows (see `findAverageUnitHeight`), so it has to be known before any\n   * section is laid out — but nothing is *clipped* to it until the very end.\n   */\n  const focalWindow: [number, number] | null = clipBeforeLayout\n    ? null\n    : [b_age ?? Infinity, t_age ?? -Infinity];\n\n  const layoutOptions = { ...options, visibleWindow: focalWindow };\n\n  /* Compute pixel scales etc. for sections\n   * We need to do this now to determine which unconformities\n   * are small enough to collapse.\n   */\n  let sectionsWithScales = computeSectionHeights(sections, layoutOptions);\n\n  if (collapseSmallUnconformities && hybridScale == null) {\n    // Collapse small unconformities in pixel height space\n    // TODO: this doesn't seem to work properly for non-age columns?\n    let threshold = unconformityHeight ?? 30;\n    if (typeof collapseSmallUnconformities == \"number\") {\n      threshold = collapseSmallUnconformities;\n    }\n\n    sectionsWithScales = collapseUnconformitiesByPixelHeight(\n      sectionsWithScales,\n      threshold,\n      layoutOptions,\n    );\n  }\n\n  /** Now that every section is laid out at full extent — with its own density\n   * and `minSectionHeight` already settled — apply the rendered window. Padding\n   * is spent here, against real pixel heights, so `windowPadding` px of an\n   * abutting section is exactly that many pixels.\n   */\n  if (focalWindow != null && (t_age != null || b_age != null)) {\n    // Resolve final densities first (a section the window cuts short is\n    // stretched to `minSectionHeight`), then spend the padding budget against\n    // them, so a margin is the pixels asked for rather than those pixels times\n    // whatever stretch its neighbor happened to need.\n    const floor =\n      layoutOptions.minSectionHeight ?? layoutOptions.targetUnitHeight ?? 0;\n    const scales = resolveWindowScales(sectionsWithScales, focalWindow, floor);\n    const natural = (section) =>\n      scales.get(section) ?? section.scaleInfo.pixelScale;\n\n    const scaleFor = natural;\n\n    const window =\n      windowPadding > 0\n        ? padWindowByPixels(\n            sectionsWithScales,\n            focalWindow,\n            windowPadding,\n            scaleFor,\n          )\n        : focalWindow;\n\n    sectionsWithScales = trimSectionsToWindow(\n      sectionsWithScales,\n      window,\n      scaleFor,\n    );\n  }\n\n  /** Prepare section scale information using groups.\n   * Total height is computed from section scales.\n   * */\n  let { totalHeight, sections: sections2 } = finalizeSectionHeights(\n    sectionsWithScales,\n    unconformityHeight,\n  );\n\n  /** For each section, find units that are overlapping.\n   * We do this after merging sections so that we can\n   * handle cases where there are overlapping units across sections\n   * */\n  const sectionsOut = sections2.map((section) => {\n    return {\n      ...section,\n      units: preprocessUnits(section, axisType),\n    };\n  });\n\n  /** Reconstitute the units so that they are sorted by section and properly enhanced.\n   * This is mostly important so that unit keyboard navigation\n   * predictably selects adjacent units.\n   */\n  const units2 = sectionsOut.reduce((acc, group) => {\n    const { units } = group;\n    for (const unit of units) {\n      acc.push(unit);\n    }\n    return acc;\n  }, []);\n\n  return {\n    units: units2,\n    totalHeight: _totalHeight ?? 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package/dist/prepare-units/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sources":["../../src/prepare-units/index.ts"],"sourcesContent":["import {\n  getSectionAgeRange,\n  getSectionPosRange,\n  groupUnitsIntoSectionsByOverlap,\n  groupUnitsIntoSectionsBySectionID,\n  mergeOverlappingSections,\n  preprocessSectionUnit,\n  preprocessUnits,\n  UnitWithLayoutHints,\n} from \"./helpers\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { useMemo } from \"react\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport {\n  collapseUnconformitiesByPixelHeight,\n  computeSectionHeights,\n  finalizeSectionHeights,\n  padWindowByPixels,\n  resolveWindowScales,\n  trimSectionsToWindow,\n  type CompositeColumnScale,\n} from \"./composite-scale\";\nimport {\n  agesOverlap,\n  MergeSectionsMode,\n  PrepareColumnOptions,\n  PreparedColumnData,\n  unitsOverlap,\n} from \"./utils\";\nimport { type ColumnHeightScaleOptions, SectionInfo } from \"./types\";\n\nexport * from \"./utils\";\nexport * from \"./types\";\nexport * from \"./density\";\nexport { preprocessUnits };\nexport type { CompositeColumnScale };\n\nexport function usePreparedColumnUnits(\n  data: UnitLong[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** This function wraps and memoizes all preparation steps for converting\n   * an array of units from the /units route to a form ready for usage.\n   */\n  return useMemo(() => {\n    return prepareColumnUnits(data, options);\n  }, [data, ...Object.values(options)]);\n}\n\nexport function prepareColumnUnits(\n  units: UnitWithLayoutHints<UnitLong>[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** Prepare units for rendering into Macrostrat columns */\n\n  let { t_age, b_age, t_pos, b_pos } = options;\n\n  const {\n    mergeSections = MergeSectionsMode.OVERLAPPING,\n    axisType,\n    unconformityHeight,\n    collapseSmallUnconformities = false,\n    hybridScale,\n    scale,\n    windowPadding = 0,\n  } = options;\n\n  let _totalHeight: number | null = null;\n\n  if (scale != null) {\n    // Set t_age and b_age based on scale domain if not already set\n    const domain = scale.domain();\n    if (axisType == ColumnAxisType.AGE) {\n      if (t_age == null) t_age = Math.min(...domain);\n      if (b_age == null) b_age = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_age) - scale(t_age));\n    } else {\n      if (t_pos == null) t_pos = Math.min(...domain);\n      if (b_pos == null) b_pos = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_pos) - scale(t_pos));\n    }\n  }\n\n  /** Age columns lay every section out at its full extent and clip to the\n   * window at the end (see below), so that a section abutting the window is\n   * sized by its own content rather than by the sliver that survives the clip.\n   * Hybrid and externally-supplied scales build their own mapping and can't be\n   * re-derived that way, so they keep the original clip-then-lay-out path. */\n  const clipBeforeLayout =\n    axisType != ColumnAxisType.AGE || hybridScale != null || scale != null;\n\n  // Start by ensuring that ages and positions are numbers\n  // also set up some values for eODP-style columns\n  let units1 = units.map(preprocessSectionUnit);\n\n  /** A bound that isn't set doesn't bound anything. Passing `null` for one is\n   * the ordinary way to say \"no window\", and comparing against it as though\n   * it were an age would throw every unit out. */\n  const window = {\n    t_age: t_age ?? -Infinity,\n    b_age: b_age ?? Infinity,\n    t_pos: t_pos ?? -Infinity,\n    b_pos: b_pos ?? Infinity,\n  };\n  const isWindowed =\n    axisType == ColumnAxisType.AGE\n      ? t_age != null || b_age != null\n      : t_pos != null || b_pos != null;\n\n  if (clipBeforeLayout && isWindowed) {\n    /** Prototype filtering to age range */\n    units1 = units1.filter((d) => {\n      // Filter units by t_age and b_age, inclusive\n      if (axisType == ColumnAxisType.AGE) {\n        return agesOverlap(d, window);\n      } else {\n        return unitsOverlap(d, window as any, axisType);\n      }\n    });\n  }\n\n  let mergeMode = mergeSections;\n  // if (axisType != ColumnAxisType.AGE) {\n  //   // For non-age columns, we always merge sections.\n  //   // This is because the \"groupUnitsIntoSections\" function is not well-defined\n  //   // for non-age columns.\n  //   mergeMode = MergeSectionsMode.ALL;\n  // }\n\n  let sections0: SectionInfo<UnitLong>[];\n  if (mergeMode == MergeSectionsMode.ALL) {\n    // For the \"merge sections\" mode, we need to create a single section\n    const [b_unit_pos, t_unit_pos] = getSectionPosRange(units1, axisType);\n    const [b_unit_age, t_unit_age] = getSectionAgeRange(units1);\n    sections0 = [\n      {\n        section_id: 0,\n        /**\n         * If ages limits are directly specified, use them to define the section bounds.\n         * */\n        t_pos: t_unit_pos,\n        b_pos: b_unit_pos,\n        t_age: t_unit_age,\n        b_age: b_unit_age,\n        units: units1,\n      },\n    ];\n  } else if (axisType == ColumnAxisType.AGE) {\n    sections0 = groupUnitsIntoSectionsBySectionID(units1, axisType);\n  } else {\n    sections0 = groupUnitsIntoSectionsByOverlap(units1, axisType);\n  }\n\n  // Limit sections to the range specified by t_age/b_age or t_pos/b_pos global options\n  for (let section of clipBeforeLayout ? sections0 : []) {\n    if (axisType == ColumnAxisType.AGE) {\n      section.t_age = Math.max(section.t_age, t_age ?? -Infinity);\n      section.b_age = Math.min(section.b_age, b_age ?? Infinity);\n    } else if (axisType == ColumnAxisType.DEPTH) {\n      section.t_pos = Math.max(section.t_pos, t_pos ?? -Infinity);\n      section.b_pos = Math.min(section.b_pos, b_pos ?? Infinity);\n    } else if (axisType == ColumnAxisType.HEIGHT) {\n      section.t_pos = Math.max(section.t_pos, t_pos ?? -Infinity);\n      section.b_pos = Math.min(section.b_pos, b_pos ?? Infinity);\n    }\n  }\n\n  /** Merging overlapping sections really only makes sense for age/height/depth\n   * columns. Ordinal columns are numbered by section so merging them\n   * results in collisions.\n   */\n  let sections = sections0;\n  if (\n    mergeSections == MergeSectionsMode.OVERLAPPING &&\n    axisType == ColumnAxisType.AGE\n  ) {\n    sections = mergeOverlappingSections(sections);\n  }\n  // Filter out undefined sections just in case\n  sections = sections.filter((d) => d != null);\n\n  // SCALES\n\n  /** The window we've been asked to render. Unit density is derived from what\n   * it shows (see `findAverageUnitHeight`), so it has to be known before any\n   * section is laid out — but nothing is *clipped* to it until the very end.\n   */\n  const focalWindow: [number, number] | null = clipBeforeLayout\n    ? null\n    : [b_age ?? Infinity, t_age ?? -Infinity];\n\n  const layoutOptions = { ...options, visibleWindow: focalWindow };\n\n  /* Compute pixel scales etc. for sections\n   * We need to do this now to determine which unconformities\n   * are small enough to collapse.\n   */\n  let sectionsWithScales = computeSectionHeights(sections, layoutOptions);\n\n  if (collapseSmallUnconformities && hybridScale == null) {\n    // Collapse small unconformities in pixel height space\n    // TODO: this doesn't seem to work properly for non-age columns?\n    let threshold = unconformityHeight ?? 30;\n    if (typeof collapseSmallUnconformities == \"number\") {\n      threshold = collapseSmallUnconformities;\n    }\n\n    sectionsWithScales = collapseUnconformitiesByPixelHeight(\n      sectionsWithScales,\n      threshold,\n      layoutOptions,\n    );\n  }\n\n  /** Now that every section is laid out at full extent — with its own density\n   * and `minSectionHeight` already settled — apply the rendered window. Padding\n   * is spent here, against real pixel heights, so `windowPadding` px of an\n   * abutting section is exactly that many pixels.\n   */\n  if (focalWindow != null && (t_age != null || b_age != null)) {\n    // Resolve final densities first (a section the window cuts short is\n    // stretched to `minSectionHeight`), then spend the padding budget against\n    // them, so a margin is the pixels asked for rather than those pixels times\n    // whatever stretch its neighbor happened to need.\n    const floor =\n      layoutOptions.minSectionHeight ?? layoutOptions.targetUnitHeight ?? 0;\n    const scales = resolveWindowScales(sectionsWithScales, focalWindow, floor);\n    const natural = (section) =>\n      scales.get(section) ?? section.scaleInfo.pixelScale;\n\n\n    const scaleFor = natural;\n\n    const window =\n      windowPadding > 0\n        ? padWindowByPixels(\n            sectionsWithScales,\n            focalWindow,\n            windowPadding,\n            scaleFor,\n          )\n        : focalWindow;\n\n    sectionsWithScales = trimSectionsToWindow(\n      sectionsWithScales,\n      window,\n      scaleFor,\n    );\n  }\n\n  /** Prepare section scale information using groups.\n   * Total height is computed from section scales.\n   * */\n  let { totalHeight, sections: sections2 } = finalizeSectionHeights(\n    sectionsWithScales,\n    unconformityHeight,\n  );\n\n  /** For each section, find units that are overlapping.\n   * We do this after merging sections so that we can\n   * handle cases where there are overlapping units across sections\n   * */\n  const sectionsOut = sections2.map((section) => {\n    return {\n      ...section,\n      units: preprocessUnits(section, axisType),\n    };\n  });\n\n  /** Reconstitute the units so that they are sorted by section and properly enhanced.\n   * This is mostly important so that unit keyboard navigation\n   * predictably selects adjacent units.\n   */\n  const units2 = sectionsOut.reduce((acc, group) => {\n    const { units } = group;\n    for (const unit of units) {\n      acc.push(unit);\n    }\n    return acc;\n  }, []);\n\n  return {\n    units: units2,\n    totalHeight: _totalHeight ?? 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+{"version":3,"file":"index.js","sources":["../../src/prepare-units/index.ts"],"sourcesContent":["import {\n  getSectionAgeRange,\n  getSectionPosRange,\n  groupUnitsIntoSectionsByOverlap,\n  groupUnitsIntoSectionsBySectionID,\n  mergeOverlappingSections,\n  preprocessSectionUnit,\n  preprocessUnits,\n  UnitWithLayoutHints,\n} from \"./helpers\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport { useMemo } from \"react\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport {\n  collapseUnconformitiesByPixelHeight,\n  computeSectionHeights,\n  finalizeSectionHeights,\n  padWindowByPixels,\n  resolveWindowScales,\n  trimSectionsToWindow,\n  type CompositeColumnScale,\n} from \"./composite-scale\";\nimport {\n  agesOverlap,\n  MergeSectionsMode,\n  PrepareColumnOptions,\n  PreparedColumnData,\n  unitsOverlap,\n} from \"./utils\";\nimport { type ColumnHeightScaleOptions, SectionInfo } from \"./types\";\n\nexport * from \"./utils\";\nexport * from \"./types\";\nexport * from \"./density\";\nexport { preprocessUnits };\nexport type { CompositeColumnScale };\n\nexport function usePreparedColumnUnits(\n  data: UnitLong[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** This function wraps and memoizes all preparation steps for converting\n   * an array of units from the /units route to a form ready for usage.\n   */\n  return useMemo(() => {\n    return prepareColumnUnits(data, options);\n  }, [data, ...Object.values(options)]);\n}\n\nexport function prepareColumnUnits(\n  units: UnitWithLayoutHints<UnitLong>[],\n  options: PrepareColumnOptions,\n): PreparedColumnData {\n  /** Prepare units for rendering into Macrostrat columns */\n\n  let { t_age, b_age, t_pos, b_pos } = options;\n\n  const {\n    mergeSections = MergeSectionsMode.OVERLAPPING,\n    axisType,\n    unconformityHeight,\n    collapseSmallUnconformities = false,\n    hybridScale,\n    scale,\n    windowPadding = 0,\n  } = options;\n\n  let _totalHeight: number | null = null;\n\n  if (scale != null) {\n    // Set t_age and b_age based on scale domain if not already set\n    const domain = scale.domain();\n    if (axisType == ColumnAxisType.AGE) {\n      if (t_age == null) t_age = Math.min(...domain);\n      if (b_age == null) b_age = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_age) - scale(t_age));\n    } else {\n      if (t_pos == null) t_pos = Math.min(...domain);\n      if (b_pos == null) b_pos = Math.max(...domain);\n      _totalHeight = Math.abs(scale(b_pos) - scale(t_pos));\n    }\n  }\n\n  /** Age columns lay every section out at its full extent and clip to the\n   * window at the end (see below), so that a section abutting the window is\n   * sized by its own content rather than by the sliver that survives the clip.\n   * Hybrid and externally-supplied scales build their own mapping and can't be\n   * re-derived that way, so they keep the original clip-then-lay-out path. */\n  const clipBeforeLayout =\n    axisType != ColumnAxisType.AGE || hybridScale != null || scale != null;\n\n  // Start by ensuring that ages and positions are numbers\n  // also set up some values for eODP-style columns\n  let units1 = units.map(preprocessSectionUnit);\n\n  /** A bound that isn't set doesn't bound anything. Passing `null` for one is\n   * the ordinary way to say \"no window\", and comparing against it as though\n   * it were an age would throw every unit out. */\n  const window = {\n    t_age: t_age ?? -Infinity,\n    b_age: b_age ?? Infinity,\n    t_pos: t_pos ?? -Infinity,\n    b_pos: b_pos ?? Infinity,\n  };\n  const isWindowed =\n    axisType == ColumnAxisType.AGE\n      ? t_age != null || b_age != null\n      : t_pos != null || b_pos != null;\n\n  if (clipBeforeLayout && isWindowed) {\n    /** Prototype filtering to age range */\n    units1 = units1.filter((d) => {\n      // Filter units by t_age and b_age, inclusive\n      if (axisType == ColumnAxisType.AGE) {\n        return agesOverlap(d, window);\n      } else {\n        return unitsOverlap(d, window as any, axisType);\n      }\n    });\n  }\n\n  let mergeMode = mergeSections;\n  // if (axisType != ColumnAxisType.AGE) {\n  //   // For non-age columns, we always merge sections.\n  //   // This is because the \"groupUnitsIntoSections\" function is not well-defined\n  //   // for non-age columns.\n  //   mergeMode = MergeSectionsMode.ALL;\n  // }\n\n  let sections0: SectionInfo<UnitLong>[];\n  if (mergeMode == MergeSectionsMode.ALL) {\n    // For the \"merge sections\" mode, we need to create a single section\n    const [b_unit_pos, t_unit_pos] = getSectionPosRange(units1, axisType);\n    const [b_unit_age, t_unit_age] = getSectionAgeRange(units1);\n    sections0 = [\n      {\n        section_id: 0,\n        /**\n         * If ages limits are directly specified, use them to define the section bounds.\n         * */\n        t_pos: t_unit_pos,\n        b_pos: b_unit_pos,\n        t_age: t_unit_age,\n        b_age: b_unit_age,\n        units: units1,\n      },\n    ];\n  } else if (axisType == ColumnAxisType.AGE) {\n    sections0 = groupUnitsIntoSectionsBySectionID(units1, axisType);\n  } else {\n    sections0 = groupUnitsIntoSectionsByOverlap(units1, axisType);\n  }\n\n  // Limit sections to the range specified by t_age/b_age or t_pos/b_pos global options\n  for (let section of clipBeforeLayout ? sections0 : []) {\n    if (axisType == ColumnAxisType.AGE) {\n      section.t_age = Math.max(section.t_age, t_age ?? -Infinity);\n      section.b_age = Math.min(section.b_age, b_age ?? Infinity);\n    } else if (axisType == ColumnAxisType.DEPTH) {\n      section.t_pos = Math.max(section.t_pos, t_pos ?? -Infinity);\n      section.b_pos = Math.min(section.b_pos, b_pos ?? Infinity);\n    } else if (axisType == ColumnAxisType.HEIGHT) {\n      section.t_pos = Math.max(section.t_pos, t_pos ?? -Infinity);\n      section.b_pos = Math.min(section.b_pos, b_pos ?? Infinity);\n    }\n  }\n\n  /** Merging overlapping sections really only makes sense for age/height/depth\n   * columns. Ordinal columns are numbered by section so merging them\n   * results in collisions.\n   */\n  let sections = sections0;\n  if (\n    mergeSections == MergeSectionsMode.OVERLAPPING &&\n    axisType == ColumnAxisType.AGE\n  ) {\n    sections = mergeOverlappingSections(sections);\n  }\n  // Filter out undefined sections just in case\n  sections = sections.filter((d) => d != null);\n\n  // SCALES\n\n  /** The window we've been asked to render. Unit density is derived from what\n   * it shows (see `findAverageUnitHeight`), so it has to be known before any\n   * section is laid out — but nothing is *clipped* to it until the very end.\n   */\n  const focalWindow: [number, number] | null = clipBeforeLayout\n    ? null\n    : [b_age ?? Infinity, t_age ?? -Infinity];\n\n  const layoutOptions = { ...options, visibleWindow: focalWindow };\n\n  /* Compute pixel scales etc. for sections\n   * We need to do this now to determine which unconformities\n   * are small enough to collapse.\n   */\n  let sectionsWithScales = computeSectionHeights(sections, layoutOptions);\n\n  if (collapseSmallUnconformities && hybridScale == null) {\n    // Collapse small unconformities in pixel height space\n    // TODO: this doesn't seem to work properly for non-age columns?\n    let threshold = unconformityHeight ?? 30;\n    if (typeof collapseSmallUnconformities == \"number\") {\n      threshold = collapseSmallUnconformities;\n    }\n\n    sectionsWithScales = collapseUnconformitiesByPixelHeight(\n      sectionsWithScales,\n      threshold,\n      layoutOptions,\n    );\n  }\n\n  /** Now that every section is laid out at full extent — with its own density\n   * and `minSectionHeight` already settled — apply the rendered window. Padding\n   * is spent here, against real pixel heights, so `windowPadding` px of an\n   * abutting section is exactly that many pixels.\n   */\n  if (focalWindow != null && (t_age != null || b_age != null)) {\n    // Resolve final densities first (a section the window cuts short is\n    // stretched to `minSectionHeight`), then spend the padding budget against\n    // them, so a margin is the pixels asked for rather than those pixels times\n    // whatever stretch its neighbor happened to need.\n    const floor =\n      layoutOptions.minSectionHeight ?? layoutOptions.targetUnitHeight ?? 0;\n    const scales = resolveWindowScales(sectionsWithScales, focalWindow, floor);\n    const natural = (section) =>\n      scales.get(section) ?? section.scaleInfo.pixelScale;\n\n    const scaleFor = natural;\n\n    const window =\n      windowPadding > 0\n        ? padWindowByPixels(\n            sectionsWithScales,\n            focalWindow,\n            windowPadding,\n            scaleFor,\n          )\n        : focalWindow;\n\n    sectionsWithScales = trimSectionsToWindow(\n      sectionsWithScales,\n      window,\n      scaleFor,\n    );\n  }\n\n  /** Prepare section scale information using groups.\n   * Total height is computed from section scales.\n   * */\n  let { totalHeight, sections: sections2 } = finalizeSectionHeights(\n    sectionsWithScales,\n    unconformityHeight,\n  );\n\n  /** For each section, find units that are overlapping.\n   * We do this after merging sections so that we can\n   * handle cases where there are overlapping units across sections\n   * */\n  const sectionsOut = sections2.map((section) => {\n    return {\n      ...section,\n      units: preprocessUnits(section, axisType),\n    };\n  });\n\n  /** Reconstitute the units so that they are sorted by section and properly enhanced.\n   * This is mostly important so that unit keyboard navigation\n   * predictably selects adjacent units.\n   */\n  const units2 = sectionsOut.reduce((acc, group) => {\n    const { units } = group;\n    for (const unit of units) {\n      acc.push(unit);\n    }\n    return acc;\n  }, []);\n\n  return {\n    units: units2,\n    totalHeight: _totalHeight ?? 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package/dist/unit-details/panel.cjs

@@ -324,7 +324,7 @@ function ThicknessField({ unit, label = "Thickness" }) {
   });
 }
 function BibInfo({ refs }) {
-  const refData = dataProvider.useMacrostratData("refs", refs);
+  const refData = dataProvider.useMacrostratData("refs", refs)?.filter((d) => d != null);
   if (refData == null || refData.length === 0) {
     return null;
   }

package/dist/unit-details/panel.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"panel.cjs","sources":["../../src/unit-details/panel.ts"],"sourcesContent":["import { JSONView } from \"@macrostrat/ui-components\";\nimport { Button, ButtonGroup } from \"@blueprintjs/core\";\nimport { ReactNode, useMemo, useState } from \"react\";\nimport {\n  DataField,\n  EnvironmentsList,\n  ItemList,\n  LithologyList,\n  LithologyTagFeature,\n  MacrostratInteractionManager,\n  MacrostratInteractionProvider,\n  MacrostratItemIdentifier,\n  Parenthetical,\n  useInteractionManager,\n  Value,\n} from \"@macrostrat/data-components\";\nimport { useColumnUnitsMap } from \"../data-provider\";\nimport {\n  useMacrostratColumnInfo,\n  useMacrostratData,\n  useMacrostratDefs,\n} from \"@macrostrat/data-provider\";\nimport type {\n  Environment,\n  EnvironmentIdentifier,\n  Interval,\n  Lithology,\n  UnitLong,\n  UnitLongFull,\n} from \"@macrostrat/api-types\";\nimport { defaultNameFunction } from \"../units/names\";\nimport classNames from \"classnames\";\nimport { AgeField, Duration, IntervalProportions } from \"./age-range\";\nimport { formatRange, formatSignificance } from \"./utils.ts\";\nimport h from \"./panel.module.sass\";\nimport { StratNameField } from \"./strat-names.ts\";\nimport {\n  Identifier,\n  UnitIdentifier,\n  UnitInfo,\n} from \"@macrostrat/data-components\";\nimport { LithologyIdentifier } from \"@macrostrat/api-types/src/lithologies\";\n\nexport interface UnitDetailsPanelProps {\n  unit: any;\n  onClose?: any;\n  className?: string;\n  actions?: ReactNode;\n  hiddenActions?: ReactNode;\n  features?: Set<UnitDetailsFeature>;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  onSelectUnit?: (unitID: number) => void;\n  onClickItem?: MacrostratItemClickHandler;\n  interactionManager?: MacrostratInteractionManager;\n  showJSON?: boolean;\n}\n\nexport function UnitDetailsPanel({\n  unit,\n  onClose,\n  className,\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n    UnitDetailsFeature.JSONToggle,\n    UnitDetailsFeature.DepthRange,\n  ]),\n  lithologyFeatures,\n  actions,\n  hiddenActions = null,\n  onSelectUnit,\n  onClickItem,\n  showJSON,\n}: UnitDetailsPanelProps) {\n  const [_showJSON, setShowJSON] = useState(false);\n\n  let content: ReactNode = null;\n  if (showJSON ?? _showJSON) {\n    content = h(JSONView, { data: unit, showRoot: false });\n  } else {\n    content = h(UnitDetailsContent, {\n      unit,\n      features,\n      lithologyFeatures,\n      onClickItem,\n    });\n  }\n\n  let title = defaultNameFunction(unit);\n\n  if (features.has(UnitDetailsFeature.JSONToggle)) {\n    hiddenActions = h([\n      h(Button, {\n        icon: \"code\",\n        small: true,\n        minimal: true,\n        key: \"json-view-toggle\",\n        className: classNames(\"json-view-toggle\", { enabled: setShowJSON }),\n        onClick(evt) {\n          setShowJSON(!_showJSON);\n          evt.stopPropagation();\n        },\n      }),\n      hiddenActions,\n    ]);\n  }\n\n  const main = h(\"div.unit-details-panel\", { className }, [\n    h(LegendPanelHeader, {\n      onClose,\n      title,\n      id: unit.unit_id,\n      actions,\n      hiddenActions,\n    }),\n    h(\"div.unit-details-content-holder\", content),\n  ]);\n\n  /** Handle unit selection clicks */\n  const clickHandlerForItem = useMemo(() => {\n    if (onSelectUnit == null && onClickItem == null) return null;\n    return (item: MacrostratItemIdentifier) => {\n      if (\"unit_id\" in item && !(\"col_id\" in item)) {\n        // We are selecting a unit within the column\n        return (event: MouseEvent) => {\n          if (onSelectUnit != null) {\n            onSelectUnit(item.unit_id);\n          } else if (onClickItem != null) {\n            console.warn(\n              \"Unit selection: onClickItem is defined but onSelectUnit is not; ignoring click\",\n            );\n          }\n          // Don't allow event to propagate further (e.g., to open a link)\n          event.preventDefault();\n        };\n      }\n      return undefined;\n    };\n  }, [onSelectUnit, onClickItem]);\n\n  if (clickHandlerForItem != null) {\n    // We wrap this in a MacrostratInteractionManager to handle unit selection\n    return h(\n      MacrostratInteractionProvider,\n      {\n        clickHandlerForItem,\n        inherit: true,\n      },\n      main,\n    );\n  }\n\n  return main;\n}\n\nexport function LegendPanelHeader({\n  title,\n  id,\n  onClose,\n  actions = null,\n  hiddenActions,\n}: {\n  title?: string | null;\n  id?: number | null;\n  onClose?: () => void;\n  actions?: ReactNode | null;\n  hiddenActions?: ReactNode | null;\n}) {\n  return h(\"header.legend-panel-header\", [\n    h(\"div.title-container\", [\n      h.if(title != null)(\"h3\", title),\n      h.if(hiddenActions != null)(\n        \"span.hidden-actions-container\",\n        h(\"div.hidden-actions\", hiddenActions),\n      ),\n    ]),\n    h(\"div.spacer\"),\n    h.if(id != null)(\"code.unit-id\", id),\n    h.if(actions != null)(ButtonGroup, { minimal: true }, actions),\n    h.if(onClose != null)(Button, {\n      icon: \"cross\",\n      minimal: true,\n      small: true,\n      onClick() {\n        onClose?.();\n      },\n    }),\n  ]);\n}\n\nexport enum UnitDetailsFeature {\n  AdjacentUnits = \"adjacent-units\",\n  Color = \"color\",\n  OutcropType = \"outcrop-type\",\n  JSONToggle = \"json-toggle\",\n  DepthRange = \"depth-range\",\n  ColumnName = \"column-name\",\n}\n\nexport type MacrostratItemClickHandler = (\n  event: MouseEvent,\n  item:\n    Lithology | Environment | UnitLong | Interval | { strat_name_id: number },\n) => void;\n\nfunction UnitDetailsContent({\n  unit,\n  lithologyFeatures = new Set([\n    LithologyTagFeature.Proportion,\n    LithologyTagFeature.Attributes,\n  ]),\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n  ]),\n  onClickItem,\n  getItemHref,\n}: {\n  unit: UnitLong;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  features?: Set<UnitDetailsFeature>;\n  onClickItem?: MacrostratItemClickHandler;\n  getItemHref?: (item: Lithology | Environment | UnitLong) => string | null;\n}) {\n  const lithMap = useMacrostratDefs(\"lithologies\");\n  const envMap = useMacrostratDefs(\"environments\");\n\n  const environments = enhanceEnvironments(unit.environ, envMap);\n  const lithologies = enhanceLithologies(unit.lith ?? [], lithMap);\n\n  let outcropField: ReactNode = null;\n  if (features.has(UnitDetailsFeature.OutcropType)) {\n    // Determine outcrop type\n    let outcrop = unit.outcrop;\n    if (outcrop == \"both\") {\n      outcrop = \"surface and subsurface\";\n    }\n    outcropField = h(DataField, {\n      label: \"Outcrop\",\n      value: outcrop,\n    });\n  }\n\n  let thicknessOrHeightRange: ReactNode = null;\n  const [thickness, thicknessUnit] = getThickness(unit);\n  // Proxy for actual heights in t_pos and b_pos\n  if (\n    features.has(UnitDetailsFeature.DepthRange) &&\n    unit.t_pos != null &&\n    unit.b_pos != null &&\n    unit.min_thick == unit.max_thick && // We have an actual fixed height\n    unit.min_thick != 0 // Not a zero thickness\n  ) {\n    const label = unit.t_pos < unit.b_pos ? \"Depth\" : \"Height\";\n    const u1 = \"m\";\n\n    thicknessOrHeightRange = h(DataField, {\n      unit: u1,\n      label,\n      value: formatRange(unit.b_pos, unit.t_pos),\n      children: h(\n        Parenthetical,\n        h(Value, { value: thickness, unit: thicknessUnit }),\n      ),\n    });\n  }\n  thicknessOrHeightRange ??= h(DataField, {\n    label: \"Thickness\",\n    value: thickness,\n    unit: thicknessUnit,\n  });\n\n  /** We are trying to move away from passing the \"color\" parameter in the API */\n  let colorSwatch: ReactNode = null;\n  if (\"color\" in unit && features.has(UnitDetailsFeature.Color)) {\n    const unit1 = unit as UnitLongFull;\n    colorSwatch = h(\"div.color-swatch\", {\n      style: { backgroundColor: unit1.color },\n    });\n  }\n\n  return h(\"div.unit-details-content\", [\n    h.if(features.has(UnitDetailsFeature.ColumnName))(ColumnNameField, {\n      col_id: unit.col_id,\n    }),\n    thicknessOrHeightRange,\n    h.if(lithologies != null)(LithologyList, {\n      label: \"Lithology\",\n      lithologies: lithologies ?? 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|| refData.length === 0) {\n    return null;\n  }\n\n  if (refData.length == 1) {\n    return h(Citation, {\n      data: refData[0],\n      tag: \"span\",\n      key: refData[0].ref_id,\n    });\n  }\n\n  return h(\n    \"ul.refs\",\n    refData.map((data, i) =>\n      h(Citation, { data, tag: \"li\", key: data.ref_id }),\n    ),\n  );\n}\n\nfunction Citation({ data, tag = \"p\" }) {\n  return h(tag, { className: \"citation\" }, [\n    h(\"span.authors\", data.author),\n    \", \",\n    h(\"span.year\", data.pub_year),\n    \", \",\n    h(\"span.title\", data.ref),\n  ]);\n}\n\nfunction enhanceEnvironments(\n  environments?: EnvironmentIdentifier[] | null,\n  envMap?: Map<number, Environment> | null,\n) {\n  return environments?.map((env) => {\n    return {\n      ...(envMap?.get(env.environ_id) ?? {}),\n      ...env,\n    };\n  });\n}\n\nfunction enhanceLithologies(\n  lithologies?: LithologyIdentifier[] | null,\n  lithMap?: Map<number, any> | null,\n) {\n  return 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ItemList,\n    { className: \"units-list\" },\n    extUnits.map((info) => {\n      return h(\n        \"span.item\",\n        h(UnitIdentifier, {\n          ...info,\n          ...interactionManager?.interactionPropsForItem({\n            unit_id: info.unitID,\n          }),\n        }),\n      );\n    }),\n  );\n}\n"],"names":["useState","h","JSONView","defaultNameFunction","Button","classNames","useMemo","MacrostratInteractionProvider","ButtonGroup","UnitDetailsFeature","LithologyTagFeature","useMacrostratDefs","DataField","formatRange","Parenthetical","Value","LithologyList","AgeField","Duration","IntervalProportions","EnvironmentsList","StratNameField","useMacrostratColumnInfo","Identifier","formatSignificance","useMacrostratData","useColumnUnitsMap","useInteractionManager","ItemList","UnitIdentifier"],"mappings":";;;;;;;;;;;;;;;;AAyDO,SAAS,iBAAiB;AAAA,EAC/B;AAAA,EACA;AAAA,EACA;AAAA,EACA,+BAAe,IAAwB;AAAA,IACrC;AAAA,IACA;AAAA,IACA;AAAA,IACA;AAAA;AAAA,EAAA,CACD;AAAA,EACD;AAAA,EACA;AAAA,EACA,gBAAgB;AAAA,EAChB;AAAA,EACA;AAAA,EACA;AACF,GAA0B;AACxB,QAAM,CAAC,WAAW,WAAW,IAAIA,MAAAA,SAAS,KAAK;AAE/C,MAAI,UAAqB;AACzB,MAAI,YAAY,WAAW;AACzB,cAAUC,aAAAA,QAAEC,uBAAU,EAAE,MAAM,MAAM,UAAU,OAAO;AAAA,EACvD,OAAO;AACL,cAAUD,aAAAA,QAAE,oBAAoB;AAAA,MAC9B;AAAA,MACA;AAAA,MACA;AAAA,MACA;AAAA,IAAA,CACD;AAAA,EACH;AAEA,MAAI,QAAQE,MAAAA,oBAAoB,IAAI;AAEpC,MAAI,SAAS;AAAA,IAAI;AAAA;AAAA,KAAgC;AAC/C,oBAAgBF,aAAAA,QAAE;AAAA,MAChBA,aAAAA,QAAEG,KAAAA,QAAQ;AAAA,QACR,MAAM;AAAA,QACN,OAAO;AAAA,QACP,SAAS;AAAA,QACT,KAAK;AAAA,QACL,WAAWC,oBAAAA,QAAW,oBAAoB,EAAE,SAAS,aAAa;AAAA,QAClE,QAAQ,KAAK;AACX,sBAAY,CAAC,SAAS;AACtB,cAAI,gBAAA;AAAA,QACN;AAAA,MAAA,CACD;AAAA,MACD;AAAA,IAAA,CACD;AAAA,EACH;AAEA,QAAM,OAAOJ,aAAAA,QAAE,0BAA0B,EAAE,aAAa;AAAA,IACtDA,aAAAA,QAAE,mBAAmB;AAAA,MACnB;AAAA,MACA;AAAA,MACA,IAAI,KAAK;AAAA,MACT;AAAA,MACA;AAAA,IAAA,CACD;AAAA,IACDA,aAAAA,QAAE,mCAAmC,OAAO;AAAA,EAAA,CAC7C;AAGD,QAAM,sBAAsBK,MAAAA,QAAQ,MAAM;AACxC,QAAI,gBAAgB,QAAQ,eAAe,KAAM,QAAO;AACxD,WAAO,CAAC,SAAmC;AACzC,UAAI,aAAa,QAAQ,EAAE,YAAY,OAAO;AAE5C,eAAO,CAAC,UAAsB;AAC5B,cAAI,gBAAgB,MAAM;AACxB,yBAAa,KAAK,OAAO;AAAA,UAC3B,WAAW,eAAe,MAAM;AAC9B,oBAAQ;AAAA,cACN;AAAA,YAAA;AAAA,UAEJ;AAEA,gBAAM,eAAA;AAAA,QACR;AAAA,MACF;AACA,aAAO;AAAA,IACT;AAAA,EACF,GAAG,CAAC,cAAc,WAAW,CAAC;AAE9B,MAAI,uBAAuB,MAAM;AAE/B,WAAOL,aAAAA;AAAAA,MACLM,eAAAA;AAAAA,MACA;AAAA,QACE;AAAA,QACA,SAAS;AAAA,MAAA;AAAA,MAEX;AAAA,IAAA;AAAA,EAEJ;AAEA,SAAO;AACT;AAEO,SAAS,kBAAkB;AAAA,EAChC;AAAA,EACA;AAAA,EACA;AAAA,EACA,UAAU;AAAA,EACV;AACF,GAMG;AACD,SAAON,aAAAA,QAAE,8BAA8B;AAAA,IACrCA,aAAAA,QAAE,uBAAuB;AAAA,MACvBA,aAAAA,QAAE,GAAG,SAAS,IAAI,EAAE,MAAM,KAAK;AAAA,MAC/BA,qBAAE,GAAG,iBAAiB,IAAI;AAAA,QACxB;AAAA,QACAA,aAAAA,QAAE,sBAAsB,aAAa;AAAA,MAAA;AAAA,IACvC,CACD;AAAA,IACDA,aAAAA,QAAE,YAAY;AAAA,IACdA,aAAAA,QAAE,GAAG,MAAM,IAAI,EAAE,gBAAgB,EAAE;AAAA,IACnCA,qBAAE,GAAG,WAAW,IAAI,EAAEO,KAAAA,aAAa,EAAE,SAAS,KAAA,GAAQ,OAAO;AAAA,IAC7DP,aAAAA,QAAE,GAAG,WAAW,IAAI,EAAEG,KAAAA,QAAQ;AAAA,MAC5B,MAAM;AAAA,MACN,SAAS;AAAA,MACT,OAAO;AAAA,MACP,UAAU;AACR,kBAAA;AAAA,MACF;AAAA,IAAA,CACD;AAAA,EAAA,CACF;AACH;AAEO,IAAK,uCAAAK,wBAAL;AACLA,sBAAA,eAAA,IAAgB;AAChBA,sBAAA,OAAA,IAAQ;AACRA,sBAAA,aAAA,IAAc;AACdA,sBAAA,YAAA,IAAa;AACbA,sBAAA,YAAA,IAAa;AACbA,sBAAA,YAAA,IAAa;AANH,SAAAA;AAAA,GAAA,sBAAA,CAAA,CAAA;AAeZ,SAAS,mBAAmB;AAAA,EAC1B;AAAA,EACA,wCAAwB,IAAI;AAAA,IAC1BC,eAAAA,oBAAoB;AAAA,IACpBA,mCAAoB;AAAA,EAAA,CACrB;AAAA,EACD,+BAAe,IAAwB;AAAA,IACrC;AAAA,IACA;AAAA;AAAA,EAAA,CACD;AAAA,EACD;AAAA,EACA;AACF,GAMG;AACD,QAAM,UAAUC,aAAAA,kBAAkB,aAAa;AAC/C,QAAM,SAASA,aAAAA,kBAAkB,cAAc;AAE/C,QAAM,eAAe,oBAAoB,KAAK,SAAS,MAAM;AAC7D,QAAM,cAAc,mBAAmB,KAAK,QAAQ,CAAA,GAAI,OAAO;AAE/D,MAAI,eAA0B;AAC9B,MAAI,SAAS;AAAA,IAAI;AAAA;AAAA,KAAiC;AAEhD,QAAI,UAAU,KAAK;AACnB,QAAI,WAAW,QAAQ;AACrB,gBAAU;AAAA,IACZ;AACA,mBAAeV,aAAAA,QAAEW,0BAAW;AAAA,MAC1B,OAAO;AAAA,MACP,OAAO;AAAA,IAAA,CACR;AAAA,EACH;AAEA,MAAI,yBAAoC;AACxC,QAAM,CAAC,WAAW,aAAa,IAAI,aAAa,IAAI;AAEpD,MACE,SAAS;AAAA,IAAI;AAAA;AAAA,EAAA,KACb,KAAK,SAAS,QACd,KAAK,SAAS,QACd,KAAK,aAAa,KAAK;AAAA,EACvB,KAAK,aAAa,GAClB;AACA,UAAM,QAAQ,KAAK,QAAQ,KAAK,QAAQ,UAAU;AAClD,UAAM,KAAK;AAEX,6BAAyBX,aAAAA,QAAEW,0BAAW;AAAA,MACpC,MAAM;AAAA,MACN;AAAA,MACA,OAAOC,MAAAA,YAAY,KAAK,OAAO,KAAK,KAAK;AAAA,MACzC,UAAUZ,aAAAA;AAAAA,QACRa,eAAAA;AAAAA,QACAb,aAAAA,QAAEc,eAAAA,OAAO,EAAE,OAAO,WAAW,MAAM,eAAe;AAAA,MAAA;AAAA,IACpD,CACD;AAAA,EACH;AACA,6BAA2Bd,aAAAA,QAAEW,0BAAW;AAAA,IACtC,OAAO;AAAA,IACP,OAAO;AAAA,IACP,MAAM;AAAA,EAAA,CACP;AAGD,MAAI,cAAyB;AAC7B,MAAI,WAAW,QAAQ,SAAS;AAAA,IAAI;AAAA;AAAA,KAA2B;AAC7D,UAAM,QAAQ;AACd,kBAAcX,aAAAA,QAAE,oBAAoB;AAAA,MAClC,OAAO,EAAE,iBAAiB,MAAM,MAAA;AAAA,IAAM,CACvC;AAAA,EACH;AAEA,SAAOA,aAAAA,QAAE,4BAA4B;AAAA,IACnCA,aAAAA,QAAE,GAAG,SAAS;AAAA,MAAI;AAAA;AAAA,IAAA,CAA8B,EAAE,iBAAiB;AAAA,MACjE,QAAQ,KAAK;AAAA,IAAA,CACd;AAAA,IACD;AAAA,IACAA,aAAAA,QAAE,GAAG,eAAe,IAAI,EAAEe,eAAAA,eAAe;AAAA,MACvC,OAAO;AAAA,MACP,aAAa,eAAe,CAAA;AAAA,MAC5B,UAAU;AAAA,IAAA,CACX;AAAA,IACDf,qBAAEgB,SAAAA,UAAU,EAAE,QAAQ;AAAA,MACpBhB,aAAAA,QAAEa,eAAAA,eAAeb,qBAAEiB,SAAAA,UAAU,EAAE,OAAO,KAAK,QAAQ,KAAK,MAAA,CAAO,CAAC;AAAA,MAChEjB,aAAAA,QAAEkB,SAAAA,qBAAqB;AAAA,QACrB;AAAA,QACA;AAAA,MAAA,CACD;AAAA,IAAA,CACF;AAAA,IACDlB,aAAAA,QAAE,GAAG,gBAAgB,IAAI,EAAEmB,eAAAA,kBAAkB;AAAA,MAC3C;AAAA,IAAA,CACD;AAAA,IACDnB,aAAAA,QAAE,GAAG,KAAK,iBAAiB,IAAI,EAAEoB,WAAAA,gBAAgB;AAAA,MAC/C,eAAe,KAAK;AAAA,IAAA,CACrB;AAAA,IACD;AAAA,IACApB,aAAAA,QAAE,GAAG,SAAS;AAAA,MAAI;AAAA;AAAA,IAAA,CAAiC,EAAE;AAAA,MACnDA,aAAAA,QAAE,GAAG,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+{"version":3,"file":"panel.cjs","sources":["../../src/unit-details/panel.ts"],"sourcesContent":["import { JSONView } from \"@macrostrat/ui-components\";\nimport { Button, ButtonGroup } from \"@blueprintjs/core\";\nimport { ReactNode, useMemo, useState } from \"react\";\nimport {\n  DataField,\n  EnvironmentsList,\n  ItemList,\n  LithologyList,\n  LithologyTagFeature,\n  MacrostratInteractionManager,\n  MacrostratInteractionProvider,\n  MacrostratItemIdentifier,\n  Parenthetical,\n  useInteractionManager,\n  Value,\n} from \"@macrostrat/data-components\";\nimport { useColumnUnitsMap } from \"../data-provider\";\nimport {\n  useMacrostratColumnInfo,\n  useMacrostratData,\n  useMacrostratDefs,\n} from \"@macrostrat/data-provider\";\nimport type {\n  Environment,\n  EnvironmentIdentifier,\n  Interval,\n  Lithology,\n  UnitLong,\n  UnitLongFull,\n} from \"@macrostrat/api-types\";\nimport { defaultNameFunction } from \"../units/names\";\nimport classNames from \"classnames\";\nimport { AgeField, Duration, IntervalProportions } from \"./age-range\";\nimport { formatRange, formatSignificance } from \"./utils.ts\";\nimport h from \"./panel.module.sass\";\nimport { StratNameField } from \"./strat-names.ts\";\nimport {\n  Identifier,\n  UnitIdentifier,\n  UnitInfo,\n} from \"@macrostrat/data-components\";\nimport { LithologyIdentifier } from \"@macrostrat/api-types/src/lithologies\";\n\nexport interface UnitDetailsPanelProps {\n  unit: any;\n  onClose?: any;\n  className?: string;\n  actions?: ReactNode;\n  hiddenActions?: ReactNode;\n  features?: Set<UnitDetailsFeature>;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  onSelectUnit?: (unitID: number) => void;\n  onClickItem?: MacrostratItemClickHandler;\n  interactionManager?: MacrostratInteractionManager;\n  showJSON?: boolean;\n}\n\nexport function UnitDetailsPanel({\n  unit,\n  onClose,\n  className,\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n    UnitDetailsFeature.JSONToggle,\n    UnitDetailsFeature.DepthRange,\n  ]),\n  lithologyFeatures,\n  actions,\n  hiddenActions = null,\n  onSelectUnit,\n  onClickItem,\n  showJSON,\n}: UnitDetailsPanelProps) {\n  const [_showJSON, setShowJSON] = useState(false);\n\n  let content: ReactNode = null;\n  if (showJSON ?? 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[], lithMap);\n\n  let outcropField: ReactNode = null;\n  if (features.has(UnitDetailsFeature.OutcropType)) {\n    // Determine outcrop type\n    let outcrop = unit.outcrop;\n    if (outcrop == \"both\") {\n      outcrop = \"surface and subsurface\";\n    }\n    outcropField = h(DataField, {\n      label: \"Outcrop\",\n      value: outcrop,\n    });\n  }\n\n  let thicknessOrHeightRange: ReactNode = null;\n  const [thickness, thicknessUnit] = getThickness(unit);\n  // Proxy for actual heights in t_pos and b_pos\n  if (\n    features.has(UnitDetailsFeature.DepthRange) &&\n    unit.t_pos != null &&\n    unit.b_pos != null &&\n    unit.min_thick == unit.max_thick && // We have an actual fixed height\n    unit.min_thick != 0 // Not a zero thickness\n  ) {\n    const label = unit.t_pos < unit.b_pos ? \"Depth\" : \"Height\";\n    const u1 = \"m\";\n\n    thicknessOrHeightRange = h(DataField, {\n      unit: u1,\n      label,\n      value: formatRange(unit.b_pos, unit.t_pos),\n      children: h(\n        Parenthetical,\n        h(Value, { value: thickness, unit: thicknessUnit }),\n      ),\n    });\n  }\n  thicknessOrHeightRange ??= h(DataField, {\n    label: \"Thickness\",\n    value: thickness,\n    unit: thicknessUnit,\n  });\n\n  /** We are trying to move away from passing the \"color\" parameter in the API */\n  let colorSwatch: ReactNode = null;\n  if (\"color\" in unit && features.has(UnitDetailsFeature.Color)) {\n    const unit1 = unit as UnitLongFull;\n    colorSwatch = h(\"div.color-swatch\", {\n      style: { backgroundColor: unit1.color },\n    });\n  }\n\n  return h(\"div.unit-details-content\", [\n    h.if(features.has(UnitDetailsFeature.ColumnName))(ColumnNameField, {\n      col_id: unit.col_id,\n    }),\n    thicknessOrHeightRange,\n    h.if(lithologies != null)(LithologyList, {\n      label: \"Lithology\",\n      lithologies: lithologies ?? [],\n      features: lithologyFeatures,\n    }),\n    h(AgeField, { unit }, [\n      h(Parenthetical, h(Duration, { value: unit.b_age - unit.t_age })),\n      h(IntervalProportions, {\n        unit,\n        onClickItem,\n      }),\n    ]),\n    h.if(environments != null)(EnvironmentsList, {\n      environments,\n    }),\n    h.if(unit.strat_name_id != null)(StratNameField, {\n      strat_name_id: unit.strat_name_id,\n    }),\n    outcropField,\n    h.if(features.has(UnitDetailsFeature.AdjacentUnits))([\n      h.if(unit.units_above != null)(\n        DataField,\n        { label: \"Above\" },\n        h(UnitIDList, {\n          units: unit.units_above,\n          showNames: true,\n        }),\n      ),\n      h.if(unit.units_below != null)(\n        DataField,\n        { label: \"Below\" },\n        h(UnitIDList, {\n          units: unit.units_below,\n          showNames: true,\n        }),\n      ),\n    ]),\n    colorSwatch,\n    h(ReferencesField, { refs: unit.refs, inline: true 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unit.max_thick ?? unit.min_thick ?? 0;\n  let _unit = \"m\";\n\n  if (minThickness == 0 && maxThickness == 0) {\n    return [\"Unknown\", null];\n  }\n\n  if (minThickness < 0.8 && maxThickness < 1.2) {\n    // Convert to cm\n    minThickness = minThickness * 100;\n    maxThickness = maxThickness * 100;\n    _unit = \"cm\";\n  } else if (minThickness > 800 && maxThickness > 1200) {\n    // Convert to km\n    minThickness = minThickness / 1000;\n    maxThickness = maxThickness / 1000;\n    _unit = \"km\";\n  }\n\n  if (minThickness == maxThickness) {\n    return [formatSignificance(minThickness), _unit];\n  }\n\n  return [formatRange(minThickness, maxThickness), _unit];\n}\n\nexport function ThicknessField({ unit, label = \"Thickness\" }) {\n  const [value, thicknessUnit] = getThickness(unit);\n  return h(DataField, {\n    label,\n    value,\n    unit: thicknessUnit,\n  });\n}\n\nfunction BibInfo({ refs }) {\n  // A reference the server doesn't know comes back as a hole, not a record\n  const refData = useMacrostratData(\"refs\", refs)?.filter((d) => d != null);\n\n  if (refData == null || refData.length === 0) {\n    return null;\n  }\n\n  if (refData.length == 1) {\n    return h(Citation, {\n      data: refData[0],\n      tag: \"span\",\n      key: refData[0].ref_id,\n    });\n  }\n\n  return h(\n    \"ul.refs\",\n    refData.map((data, i) =>\n      h(Citation, { data, tag: \"li\", key: data.ref_id }),\n    ),\n  );\n}\n\nfunction Citation({ data, tag = \"p\" }) {\n  return h(tag, { className: \"citation\" }, [\n    h(\"span.authors\", data.author),\n    \", \",\n    h(\"span.year\", data.pub_year),\n    \", \",\n    h(\"span.title\", data.ref),\n  ]);\n}\n\nfunction enhanceEnvironments(\n  environments?: EnvironmentIdentifier[] | null,\n  envMap?: Map<number, Environment> | null,\n) {\n  return environments?.map((env) => {\n    return {\n      ...(envMap?.get(env.environ_id) ?? {}),\n      ...env,\n    };\n  });\n}\n\nfunction enhanceLithologies(\n  lithologies?: 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);\n}\n"],"names":["useState","h","JSONView","defaultNameFunction","Button","classNames","useMemo","MacrostratInteractionProvider","ButtonGroup","UnitDetailsFeature","LithologyTagFeature","useMacrostratDefs","DataField","formatRange","Parenthetical","Value","LithologyList","AgeField","Duration","IntervalProportions","EnvironmentsList","StratNameField","useMacrostratColumnInfo","Identifier","formatSignificance","useMacrostratData","useColumnUnitsMap","useInteractionManager","ItemList","UnitIdentifier"],"mappings":";;;;;;;;;;;;;;;;AAyDO,SAAS,iBAAiB;AAAA,EAC/B;AAAA,EACA;AAAA,EACA;AAAA,EACA,+BAAe,IAAwB;AAAA,IACrC;AAAA,IACA;AAAA,IACA;AAAA,IACA;AAAA;AAAA,EAAA,CACD;AAAA,EACD;AAAA,EACA;AAAA,EACA,gBAAgB;AAAA,EAChB;AAAA,EACA;AAAA,EACA;AACF,GAA0B;AACxB,QAAM,CAAC,WAAW,WAAW,IAAIA,MAAAA,SAAS,KAAK;AAE/C,MAAI,UAAqB;AACzB,MAAI,YAAY,WAAW;AACzB,cAAUC,aAAAA,QAAEC,uBAAU,EAAE,MAAM,MAAM,UAAU,OAAO;AAAA,EACvD,OAAO;AACL,cAAUD,aAAAA,QAAE,oBAAoB;AAAA,MAC9B;AAAA,MACA;AAAA,MACA;AAAA,MACA;AAAA,IAAA,CACD;AAAA,EACH;AAEA,MAAI,QAAQE,MAAAA,oBAAoB,IAAI;AAEpC,MAAI,SAAS;AAAA,IAAI;AAAA;AAAA,KAAgC;AAC/C,oBAAgBF,aAAAA,QAAE;AAAA,MAChBA,aAAAA,QAAEG,KAAAA,QAAQ;AAAA,QACR,MAAM;AAAA,QACN,OAAO;AAAA,QACP,SAAS;AAAA,QACT,KAAK;AAAA,QACL,WAAWC,oBAAAA,QAAW,oBAAoB,EAAE,SAAS,aAAa;AAAA,QAClE,QAAQ,KAAK;AACX,sBAAY,CAAC,SAAS;AACtB,cAAI,gBAAA;AAAA,QACN;AAAA,MAAA,CACD;AAAA,MACD;AAAA,IAAA,CACD;AAAA,EACH;AAEA,QAAM,OAAOJ,aAAAA,QAAE,0BAA0B,EAAE,aAAa;AAAA,IACtDA,aAAAA,QAAE,mBAAmB;AAAA,MACnB;AAAA,MACA;AAAA,MACA,IAAI,KAAK;AAAA,MACT;AAAA,MACA;AAAA,IAAA,CACD;AAAA,IACDA,aAAAA,QAAE,mCAAmC,OAAO;AAAA,EAAA,CAC7C;AAGD,QAAM,sBAAsBK,MAAAA,QAAQ,MAAM;AACxC,QAAI,gBAAgB,QAAQ,eAAe,KAAM,QAAO;AACxD,WAAO,CAAC,SAAmC;AACzC,UAAI,aAAa,QAAQ,EAAE,YAAY,OAAO;AAE5C,eAAO,CAAC,UAAsB;AAC5B,cAAI,gBAAgB,MAAM;AACxB,yBAAa,KAAK,OAAO;AAAA,UAC3B,WAAW,eAAe,MAAM;AAC9B,oBAAQ;AAAA,cACN;AAAA,YAAA;AAAA,UAEJ;AAEA,gBAAM,eAAA;AAAA,QACR;AAAA,MACF;AACA,aAAO;AAAA,IACT;AAAA,EACF,GAAG,CAAC,cAAc,WAAW,CAAC;AAE9B,MAAI,uBAAuB,MAAM;AAE/B,WAAOL,aAAAA;AAAAA,MACLM,eAAAA;AAAAA,MACA;AAAA,QACE;AAAA,QACA,SAAS;AAAA,MAAA;AAAA,MAEX;AAAA,IAAA;AAAA,EAEJ;AAEA,SAAO;AACT;AAEO,SAAS,kBAAkB;AAAA,EAChC;AAAA,EACA;AAAA,EACA;AAAA,EACA,UAAU;AAAA,EACV;AACF,GAMG;AACD,SAAON,aAAAA,QAAE,8BAA8B;AAAA,IACrCA,aAAAA,QAAE,uBAAuB;AAAA,MACvBA,aAAAA,QAAE,GAAG,SAAS,IAAI,EAAE,MAAM,KAAK;AAAA,MAC/BA,qBAAE,GAAG,iBAAiB,IAAI;AAAA,QACxB;AAAA,QACAA,aAAAA,QAAE,sBAAsB,aAAa;AAAA,MAAA;AAAA,IACvC,CACD;AAAA,IACDA,aAAAA,QAAE,YAAY;AAAA,IACdA,aAAAA,QAAE,GAAG,MAAM,IAAI,EAAE,gBAAgB,EAAE;AAAA,IACnCA,qBAAE,GAAG,WAAW,IAAI,EAAEO,KAAAA,aAAa,EAAE,SAAS,KAAA,GAAQ,OAAO;AAAA,IAC7DP,aAAAA,QAAE,GAAG,WAAW,IAAI,EAAEG,KAAAA,QAAQ;AAAA,MAC5B,MAAM;AAAA,MACN,SAAS;AAAA,MACT,OAAO;AAAA,MACP,UAAU;AACR,kBAAA;AAAA,MACF;AAAA,IAAA,CACD;AAAA,EAAA,CACF;AACH;AAEO,IAAK,uCAAAK,wBAAL;AACLA,sBAAA,eAAA,IAAgB;AAChBA,sBAAA,OAAA,IAAQ;AACRA,sBAAA,aAAA,IAAc;AACdA,sBAAA,YAAA,IAAa;AACbA,sBAAA,YAAA,IAAa;AACbA,sBAAA,YAAA,IAAa;AANH,SAAAA;AAAA,GAAA,sBAAA,CAAA,CAAA;AAeZ,SAAS,mBAAmB;AAAA,EAC1B;AAAA,EACA,wCAAwB,IAAI;AAAA,IAC1BC,eAAAA,oBAAoB;AAAA,IACpBA,mCAAoB;AAAA,EAAA,CACrB;AAAA,EACD,+BAAe,IAAwB;AAAA,IACrC;AAAA,IACA;AAAA;AAAA,EAAA,CACD;AAAA,EACD;AAAA,EACA;AACF,GAMG;AACD,QAAM,UAAUC,aAAAA,kBAAkB,aAAa;AAC/C,QAAM,SAASA,aAAAA,kBAAkB,cAAc;AAE/C,QAAM,eAAe,oBAAoB,KAAK,SAAS,MAAM;AAC7D,QAAM,cAAc,mBAAmB,KAAK,QAAQ,CAAA,GAAI,OAAO;AAE/D,MAAI,eAA0B;AAC9B,MAAI,SAAS;AAAA,IAAI;AAAA;AAAA,KAAiC;AAEhD,QAAI,UAAU,KAAK;AACnB,QAAI,WAAW,QAAQ;AACrB,gBAAU;AAAA,IACZ;AACA,mBAAeV,aAAAA,QAAEW,0BAAW;AAAA,MAC1B,OAAO;AAAA,MACP,OAAO;AAAA,IAAA,CACR;AAAA,EACH;AAEA,MAAI,yBAAoC;AACxC,QAAM,CAAC,WAAW,aAAa,IAAI,aAAa,IAAI;AAEpD,MACE,SAAS;AAAA,IAAI;AAAA;AAAA,EAAA,KACb,KAAK,SAAS,QACd,KAAK,SAAS,QACd,KAAK,aAAa,KAAK;AAAA,EACvB,KAAK,aAAa,GAClB;AACA,UAAM,QAAQ,KAAK,QAAQ,KAAK,QAAQ,UAAU;AAClD,UAAM,KAAK;AAEX,6BAAyBX,aAAAA,QAAEW,0BAAW;AAAA,MACpC,MAAM;AAAA,MACN;AAAA,MACA,OAAOC,MAAAA,YAAY,KAAK,OAAO,KAAK,KAAK;AAAA,MACzC,UAAUZ,aAAAA;AAAAA,QACRa,eAAAA;AAAAA,QACAb,aAAAA,QAAEc,eAAAA,OAAO,EAAE,OAAO,WAAW,MAAM,eAAe;AAAA,MAAA;AAAA,IACpD,CACD;AAAA,EACH;AACA,6BAA2Bd,aAAAA,QAAEW,0BAAW;AAAA,IACtC,OAAO;AAAA,IACP,OAAO;AAAA,IACP,MAAM;AAAA,EAAA,CACP;AAGD,MAAI,cAAyB;AAC7B,MAAI,WAAW,QAAQ,SAAS;AAAA,IAAI;AAAA;AAAA,KAA2B;AAC7D,UAAM,QAAQ;AACd,kBAAcX,aAAAA,QAAE,oBAAoB;AAAA,MAClC,OAAO,EAAE,iBAAiB,MAAM,MAAA;AAAA,IAAM,CACvC;AAAA,EACH;AAEA,SAAOA,aAAAA,QAAE,4BAA4B;AAAA,IACnCA,aAAAA,QAAE,GAAG,SAAS;AAAA,MAAI;AAAA;AAAA,IAAA,CAA8B,EAAE,iBAAiB;AAAA,MACjE,QAAQ,KAAK;AAAA,IAAA,CACd;AAAA,IACD;AAAA,IACAA,aAAAA,QAAE,GAAG,eAAe,IAAI,EAAEe,eAAAA,eAAe;AAAA,MACvC,OAAO;AAAA,MACP,aAAa,eAAe,CAAA;AAAA,MAC5B,UAAU;AAAA,IAAA,CACX;AAAA,IACDf,qBAAEgB,SAAAA,UAAU,EAAE,QAAQ;AAAA,MACpBhB,aAAAA,QAAEa,eAAAA,eAAeb,qBAAEiB,SAAAA,UAAU,EAAE,OAAO,KAAK,QAAQ,KAAK,MAAA,CAAO,CAAC;AAAA,MAChEjB,aAAAA,QAAEkB,SAAAA,qBAAqB;AAAA,QACrB;AAAA,QACA;AAAA,MAAA,CACD;AAAA,IAAA,CACF;AAAA,IACDlB,aAAAA,QAAE,GAAG,gBAAgB,IAAI,EAAEmB,eAAAA,kBAAkB;AAAA,MAC3C;AAAA,IAAA,CACD;AAAA,IACDnB,aAAAA,QAAE,GAAG,KAAK,iBAAiB,IAAI,EAAEoB,WAAAA,gBAAgB;AAAA,MAC/C,eAAe,KAAK;AAAA,IAAA,CACrB;AAAA,IACD;AAAA,IACApB,aAAAA,QAAE,GAAG,SAAS;AAAA,MAAI;AAAA;AAAA,IAAA,CAAiC,EAAE;AAAA,MACnDA,aAAAA,QAAE,GAAG,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package/dist/unit-details/panel.js

@@ -320,7 +320,7 @@ function ThicknessField({ unit, label = "Thickness" }) {
   });
 }
 function BibInfo({ refs }) {
-  const refData = useMacrostratData("refs", refs);
+  const refData = useMacrostratData("refs", refs)?.filter((d) => d != null);
   if (refData == null || refData.length === 0) {
     return null;
   }

package/dist/unit-details/panel.js.map

@@ -1 +1 @@
-{"version":3,"file":"panel.js","sources":["../../src/unit-details/panel.ts"],"sourcesContent":["import { JSONView } from \"@macrostrat/ui-components\";\nimport { Button, ButtonGroup } from \"@blueprintjs/core\";\nimport { ReactNode, useMemo, useState } from \"react\";\nimport {\n  DataField,\n  EnvironmentsList,\n  ItemList,\n  LithologyList,\n  LithologyTagFeature,\n  MacrostratInteractionManager,\n  MacrostratInteractionProvider,\n  MacrostratItemIdentifier,\n  Parenthetical,\n  useInteractionManager,\n  Value,\n} from \"@macrostrat/data-components\";\nimport { useColumnUnitsMap } from \"../data-provider\";\nimport {\n  useMacrostratColumnInfo,\n  useMacrostratData,\n  useMacrostratDefs,\n} from \"@macrostrat/data-provider\";\nimport type {\n  Environment,\n  EnvironmentIdentifier,\n  Interval,\n  Lithology,\n  UnitLong,\n  UnitLongFull,\n} from \"@macrostrat/api-types\";\nimport { defaultNameFunction } from \"../units/names\";\nimport classNames from \"classnames\";\nimport { AgeField, Duration, IntervalProportions } from \"./age-range\";\nimport { formatRange, formatSignificance } from \"./utils.ts\";\nimport h from \"./panel.module.sass\";\nimport { StratNameField } from \"./strat-names.ts\";\nimport {\n  Identifier,\n  UnitIdentifier,\n  UnitInfo,\n} from \"@macrostrat/data-components\";\nimport { LithologyIdentifier } from \"@macrostrat/api-types/src/lithologies\";\n\nexport interface UnitDetailsPanelProps {\n  unit: any;\n  onClose?: any;\n  className?: string;\n  actions?: ReactNode;\n  hiddenActions?: ReactNode;\n  features?: Set<UnitDetailsFeature>;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  onSelectUnit?: (unitID: number) => void;\n  onClickItem?: MacrostratItemClickHandler;\n  interactionManager?: MacrostratInteractionManager;\n  showJSON?: boolean;\n}\n\nexport function UnitDetailsPanel({\n  unit,\n  onClose,\n  className,\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n    UnitDetailsFeature.JSONToggle,\n    UnitDetailsFeature.DepthRange,\n  ]),\n  lithologyFeatures,\n  actions,\n  hiddenActions = null,\n  onSelectUnit,\n  onClickItem,\n  showJSON,\n}: UnitDetailsPanelProps) {\n  const [_showJSON, setShowJSON] = useState(false);\n\n  let content: ReactNode = null;\n  if (showJSON ?? _showJSON) {\n    content = h(JSONView, { data: unit, showRoot: false });\n  } else {\n    content = h(UnitDetailsContent, {\n      unit,\n      features,\n      lithologyFeatures,\n      onClickItem,\n    });\n  }\n\n  let title = defaultNameFunction(unit);\n\n  if (features.has(UnitDetailsFeature.JSONToggle)) {\n    hiddenActions = h([\n      h(Button, {\n        icon: \"code\",\n        small: true,\n        minimal: true,\n        key: \"json-view-toggle\",\n        className: classNames(\"json-view-toggle\", { enabled: setShowJSON }),\n        onClick(evt) {\n          setShowJSON(!_showJSON);\n          evt.stopPropagation();\n        },\n      }),\n      hiddenActions,\n    ]);\n  }\n\n  const main = h(\"div.unit-details-panel\", { className }, [\n    h(LegendPanelHeader, {\n      onClose,\n      title,\n      id: unit.unit_id,\n      actions,\n      hiddenActions,\n    }),\n    h(\"div.unit-details-content-holder\", content),\n  ]);\n\n  /** Handle unit selection clicks */\n  const clickHandlerForItem = useMemo(() => {\n    if (onSelectUnit == null && onClickItem == null) return null;\n    return (item: MacrostratItemIdentifier) => {\n      if (\"unit_id\" in item && !(\"col_id\" in item)) {\n        // We are selecting a unit within the column\n        return (event: MouseEvent) => {\n          if (onSelectUnit != null) {\n            onSelectUnit(item.unit_id);\n          } else if (onClickItem != null) {\n            console.warn(\n              \"Unit selection: onClickItem is defined but onSelectUnit is not; ignoring click\",\n            );\n          }\n          // Don't allow event to propagate further (e.g., to open a link)\n          event.preventDefault();\n        };\n      }\n      return undefined;\n    };\n  }, [onSelectUnit, onClickItem]);\n\n  if (clickHandlerForItem != null) {\n    // We wrap this in a MacrostratInteractionManager to handle unit selection\n    return h(\n      MacrostratInteractionProvider,\n      {\n        clickHandlerForItem,\n        inherit: true,\n      },\n      main,\n    );\n  }\n\n  return main;\n}\n\nexport function LegendPanelHeader({\n  title,\n  id,\n  onClose,\n  actions = null,\n  hiddenActions,\n}: {\n  title?: string | null;\n  id?: number | null;\n  onClose?: () => void;\n  actions?: ReactNode | null;\n  hiddenActions?: ReactNode | null;\n}) {\n  return h(\"header.legend-panel-header\", [\n    h(\"div.title-container\", [\n      h.if(title != null)(\"h3\", title),\n      h.if(hiddenActions != null)(\n        \"span.hidden-actions-container\",\n        h(\"div.hidden-actions\", hiddenActions),\n      ),\n    ]),\n    h(\"div.spacer\"),\n    h.if(id != null)(\"code.unit-id\", id),\n    h.if(actions != null)(ButtonGroup, { minimal: true }, actions),\n    h.if(onClose != null)(Button, {\n      icon: \"cross\",\n      minimal: true,\n      small: true,\n      onClick() {\n        onClose?.();\n      },\n    }),\n  ]);\n}\n\nexport enum UnitDetailsFeature {\n  AdjacentUnits = \"adjacent-units\",\n  Color = \"color\",\n  OutcropType = \"outcrop-type\",\n  JSONToggle = \"json-toggle\",\n  DepthRange = \"depth-range\",\n  ColumnName = \"column-name\",\n}\n\nexport type MacrostratItemClickHandler = (\n  event: MouseEvent,\n  item:\n    Lithology | Environment | UnitLong | Interval | { strat_name_id: number },\n) => void;\n\nfunction UnitDetailsContent({\n  unit,\n  lithologyFeatures = new Set([\n    LithologyTagFeature.Proportion,\n    LithologyTagFeature.Attributes,\n  ]),\n  features = new Set<UnitDetailsFeature>([\n    UnitDetailsFeature.AdjacentUnits,\n    UnitDetailsFeature.OutcropType,\n  ]),\n  onClickItem,\n  getItemHref,\n}: {\n  unit: UnitLong;\n  lithologyFeatures?: Set<LithologyTagFeature>;\n  features?: Set<UnitDetailsFeature>;\n  onClickItem?: MacrostratItemClickHandler;\n  getItemHref?: (item: Lithology | Environment | UnitLong) => string | null;\n}) {\n  const lithMap = useMacrostratDefs(\"lithologies\");\n  const envMap = useMacrostratDefs(\"environments\");\n\n  const environments = enhanceEnvironments(unit.environ, envMap);\n  const lithologies = enhanceLithologies(unit.lith ?? [], lithMap);\n\n  let outcropField: ReactNode = null;\n  if (features.has(UnitDetailsFeature.OutcropType)) {\n    // Determine outcrop type\n    let outcrop = unit.outcrop;\n    if (outcrop == \"both\") {\n      outcrop = \"surface and subsurface\";\n    }\n    outcropField = h(DataField, {\n      label: \"Outcrop\",\n      value: outcrop,\n    });\n  }\n\n  let thicknessOrHeightRange: ReactNode = null;\n  const [thickness, thicknessUnit] = getThickness(unit);\n  // Proxy for actual heights in t_pos and b_pos\n  if (\n    features.has(UnitDetailsFeature.DepthRange) &&\n    unit.t_pos != null &&\n    unit.b_pos != null &&\n    unit.min_thick == unit.max_thick && // We have an actual fixed height\n    unit.min_thick != 0 // Not a zero thickness\n  ) {\n    const label = unit.t_pos < unit.b_pos ? \"Depth\" : \"Height\";\n    const u1 = \"m\";\n\n    thicknessOrHeightRange = h(DataField, {\n      unit: u1,\n      label,\n      value: formatRange(unit.b_pos, unit.t_pos),\n      children: h(\n        Parenthetical,\n        h(Value, { value: thickness, unit: thicknessUnit }),\n      ),\n    });\n  }\n  thicknessOrHeightRange ??= h(DataField, {\n    label: \"Thickness\",\n    value: thickness,\n    unit: thicknessUnit,\n  });\n\n  /** We are trying to move away from passing the \"color\" parameter in the API */\n  let colorSwatch: ReactNode = null;\n  if (\"color\" in unit && features.has(UnitDetailsFeature.Color)) {\n    const unit1 = unit as UnitLongFull;\n    colorSwatch = h(\"div.color-swatch\", {\n      style: { backgroundColor: unit1.color },\n    });\n  }\n\n  return h(\"div.unit-details-content\", [\n    h.if(features.has(UnitDetailsFeature.ColumnName))(ColumnNameField, {\n      col_id: unit.col_id,\n    }),\n    thicknessOrHeightRange,\n    h.if(lithologies != null)(LithologyList, {\n      label: \"Lithology\",\n      lithologies: lithologies ?? [],\n      features: lithologyFeatures,\n    }),\n    h(AgeField, { unit }, [\n      h(Parenthetical, h(Duration, { value: unit.b_age - unit.t_age })),\n      h(IntervalProportions, {\n        unit,\n        onClickItem,\n      }),\n    ]),\n    h.if(environments != null)(EnvironmentsList, {\n      environments,\n    }),\n    h.if(unit.strat_name_id != null)(StratNameField, {\n      strat_name_id: unit.strat_name_id,\n    }),\n    outcropField,\n    h.if(features.has(UnitDetailsFeature.AdjacentUnits))([\n      h.if(unit.units_above != null)(\n        DataField,\n        { label: \"Above\" },\n        h(UnitIDList, {\n          units: unit.units_above,\n          showNames: true,\n        }),\n      ),\n      h.if(unit.units_below != null)(\n        DataField,\n        { label: \"Below\" },\n        h(UnitIDList, {\n          units: unit.units_below,\n          showNames: true,\n        }),\n      ),\n    ]),\n    colorSwatch,\n    h(ReferencesField, { refs: unit.refs, inline: true 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unit.max_thick ?? unit.min_thick ?? 0;\n  let _unit = \"m\";\n\n  if (minThickness == 0 && maxThickness == 0) {\n    return [\"Unknown\", null];\n  }\n\n  if (minThickness < 0.8 && maxThickness < 1.2) {\n    // Convert to cm\n    minThickness = minThickness * 100;\n    maxThickness = maxThickness * 100;\n    _unit = \"cm\";\n  } else if (minThickness > 800 && maxThickness > 1200) {\n    // Convert to km\n    minThickness = minThickness / 1000;\n    maxThickness = maxThickness / 1000;\n    _unit = \"km\";\n  }\n\n  if (minThickness == maxThickness) {\n    return [formatSignificance(minThickness), _unit];\n  }\n\n  return [formatRange(minThickness, maxThickness), _unit];\n}\n\nexport function ThicknessField({ unit, label = \"Thickness\" }) {\n  const [value, thicknessUnit] = getThickness(unit);\n  return h(DataField, {\n    label,\n    value,\n    unit: thicknessUnit,\n  });\n}\n\nfunction BibInfo({ refs }) {\n  const refData = useMacrostratData(\"refs\", refs);\n\n  if (refData == null 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@macrostrat/column-views",
-  "version": "3.12.1",
+  "version": "3.13.0",
   "description": "Data views for Macrostrat stratigraphic columns",
   "repository": {
     "type": "git",
@@ -49,8 +49,8 @@
     "@macrostrat/api-types": "^1.4.0",
     "@macrostrat/color-utils": "^1.2.2",
     "@macrostrat/column-components": "^2.2.0",
-    "@macrostrat/data-components": "^1.7.0",
-    "@macrostrat/data-provider": "^1.4.0",
+    "@macrostrat/data-components": "^1.8.0",
+    "@macrostrat/data-provider": "^1.4.1",
     "@macrostrat/hyper": "^3.1.1",
     "@macrostrat/map-views": "^1.1.1",
     "@macrostrat/scoped-store": "^1.1.0",

package/src/column.ts

@@ -65,7 +65,13 @@ interface BaseColumnProps extends Omit<
   keyboardNavigation?: boolean;
   showLabels?: boolean;
   maxInternalColumns?: number;
+  /** Draw the age (or height) axis beside the column (default). Off for a
+   * column whose coordinates aren't a measure — one laid out by surface order
+   * alone, say. */
+  showAgeAxis?: boolean;
   // Timescale properties
+  /** Draw the timescale. Defaults to on for an age column; an explicit value
+   * wins over `timescaleLevels` / `timescales`, which otherwise turn it on. */
   showTimescale?: boolean;
   timescaleLevels?: number | [number, number];
   /** Regional or project timescales drawn as extra columns beside the
@@ -169,6 +175,22 @@ export function Column(props: ColumnProps) {
     _axisType = ColumnAxisType.AGE;
   }
 
+  let _sectionOptions = sectionOptions;
+  if (_sectionOptions == undefined) {
+    // Build our own section options function based on targetUnitHeight
+    _sectionOptions = (ctx) => {
+      /** Scale targetUnitHeight by the number of units, so that a section with just a few units
+       * is drawn taller than a section with many units.
+       */
+      const n = ctx.units.length;
+      const expansionFactor = 8 / Math.min(Math.max(n, 1), 8);
+
+      return {
+        targetUnitHeight: targetUnitHeight * expansionFactor,
+      };
+    };
+  }
+
   const { sections, units, totalHeight } = usePreparedColumnUnits(rawUnits, {
     axisType: _axisType,
     t_age,
@@ -177,7 +199,7 @@ export function Column(props: ColumnProps) {
     b_pos,
     mergeSections,
     targetUnitHeight,
-    sectionOptions,
+    sectionOptions: _sectionOptions,
     unconformityHeight,
     pixelScale,
     pixelsPerMyr,
@@ -260,6 +282,7 @@ function ColumnInner(props: ColumnInnerProps) {
     onClickTimescaleInterval,
     timescaleIntervalStyle,
     ageAxisComponent = CompositeAgeAxis,
+    showAgeAxis = true,
   } = props;
 
   const { axisType } = useMacrostratColumnData();
@@ -288,11 +311,9 @@ function ColumnInner(props: ColumnInnerProps) {
     showLabelColumn = false;
   }
 
-  let _showTimescale = showTimescale ?? true;
-  if (timescaleLevels != null || timescales != null) {
-    _showTimescale = true;
-  }
-  _showTimescale = axisType == ColumnAxisType.AGE && _showTimescale;
+  // On unless turned off outright: passing levels or timescales no longer
+  // overrides an explicit `false`
+  const _showTimescale = axisType == ColumnAxisType.AGE && (showTimescale ?? true);
 
   return h(
     ColumnContainer,
@@ -302,7 +323,7 @@ function ColumnInner(props: ColumnInnerProps) {
       className,
     },
     h("div.column", { ref: columnRef }, [
-      h(ageAxisComponent),
+      h.if(showAgeAxis)(ageAxisComponent),
       h.if(_showTimescale)(CompositeTimescale, {
         levels: timescaleLevels,
         additionalTimescales,