@macrostrat/column-views 2.4.4 → 3.0.0

package/dist/data-provider/core.js

@@ -0,0 +1,56 @@
+import { atom } from "jotai";
+import { createIsolation } from "jotai-scope";
+import { useRef, useEffect } from "react";
+import h from "@macrostrat/hyper";
+const scope = createIsolation();
+function ScopedProvider({
+  children,
+  atoms,
+  shouldUpdateAtoms = true
+}) {
+  let val = null;
+  try {
+    val = scope.useStore();
+    return children;
+  } catch {
+    return h(scope.Provider, { store: null, initialValues: atoms }, [
+      h.if(shouldUpdateAtoms)(AtomUpdater, { atoms }),
+      children
+    ]);
+  }
+}
+function AtomUpdater({
+  atoms
+}) {
+  const store = scope.useStore();
+  const prevLengthRef = useRef(atoms.length);
+  useEffect(() => {
+    if (prevLengthRef.current !== atoms.length) {
+      console.error("Error: number of atoms in ScopedAtomUpdater has changed.");
+      prevLengthRef.current = atoms.length;
+    }
+  }, [atoms.length]);
+  for (const [atom2, value] of atoms) {
+    useEffect(() => {
+      store.set(atom2, value);
+    }, [store, value]);
+  }
+  return null;
+}
+const columnUnitsAtom = atom();
+const columnUnitsMapAtom = atom((get) => {
+  const units = get(columnUnitsAtom);
+  if (!units) return null;
+  const unitMap = /* @__PURE__ */ new Map();
+  units.forEach((unit) => {
+    unitMap.set(unit.unit_id, unit);
+  });
+  return unitMap;
+});
+export {
+  ScopedProvider,
+  columnUnitsAtom,
+  columnUnitsMapAtom,
+  scope
+};
+//# sourceMappingURL=core.js.map

package/dist/{esm/column-views.67804ce5.js.map → data-provider/core.js.map}

@@ -1 +1 @@
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+{"version":3,"file":"core.js","sources":["../../src/data-provider/core.ts"],"sourcesContent":["import { atom, type WritableAtom } from \"jotai\";\nimport { createIsolation } from \"jotai-scope\";\nimport { BaseUnit } from \"@macrostrat/api-types\";\nimport { ReactNode, useEffect, useRef } from \"react\";\nimport h from \"@macrostrat/hyper\";\n\ninterface StateIsolation {\n  Provider: (props: {\n    store?: any;\n    initialValues?: AtomMap;\n    children: ReactNode;\n  }) => ReactNode;\n  useStore: () => any;\n  useAtom: any;\n  useAtomValue: any;\n  useSetAtom: any;\n}\n\nexport const scope: StateIsolation = createIsolation();\n\nexport type AtomMap = [WritableAtom<any, any, any>, any][];\n\ntype ProviderProps = {\n  children: ReactNode;\n  atoms?: AtomMap;\n  shouldUpdateAtoms?: boolean;\n};\n\nexport function ScopedProvider({\n  children,\n  atoms,\n  shouldUpdateAtoms = true,\n}: ProviderProps) {\n  // Always use the same store instance in this tree\n  let val = null;\n  try {\n    val = scope.useStore();\n    // This store has already been provided\n    return children;\n  } catch {\n    return h(scope.Provider, { store: null, initialValues: atoms }, [\n      h.if(shouldUpdateAtoms)(AtomUpdater, { atoms }),\n      children,\n    ]);\n  }\n}\n\nfunction AtomUpdater({\n  atoms,\n}: {\n  atoms: [WritableAtom<any, any, any>, any][];\n}) {\n  /**\n   * A generic updater to sync Jotai atoms with state passed as props.\n   * Useful for scoped providers where state needs to be synced outside\n   * the current context.\n   */\n  /** TODO: this is an awkward way to keep atoms updated */\n  // The scoped store\n  const store = scope.useStore();\n\n  // Warn on atoms changing length\n  const prevLengthRef = useRef(atoms.length);\n  useEffect(() => {\n    if (prevLengthRef.current !== atoms.length) {\n      console.error(\"Error: number of atoms in ScopedAtomUpdater has changed.\");\n      prevLengthRef.current = atoms.length;\n    }\n  }, [atoms.length]);\n\n  for (const [atom, value] of atoms) {\n    useEffect(() => {\n      store.set(atom, value);\n    }, [store, value]);\n  }\n  return null;\n}\n\nexport const columnUnitsAtom = atom<BaseUnit[]>();\n\nexport const columnUnitsMapAtom = atom<Map<number, BaseUnit> | null>((get) => {\n  const units = get(columnUnitsAtom);\n  if (!units) return null;\n  const unitMap = new Map<number, BaseUnit>();\n  units.forEach((unit) => {\n    unitMap.set(unit.unit_id, unit);\n  });\n  return unitMap;\n});\n"],"names":["atom"],"mappings":";;;;AAkBO,MAAM,QAAwB,gBAAA;AAU9B,SAAS,eAAe;AAAA,EAC7B;AAAA,EACA;AAAA,EACA,oBAAoB;AACtB,GAAkB;AAEhB,MAAI,MAAM;AACV,MAAI;AACF,UAAM,MAAM,SAAA;AAEZ,WAAO;AAAA,EACT,QAAQ;AACN,WAAO,EAAE,MAAM,UAAU,EAAE,OAAO,MAAM,eAAe,SAAS;AAAA,MAC9D,EAAE,GAAG,iBAAiB,EAAE,aAAa,EAAE,OAAO;AAAA,MAC9C;AAAA,IAAA,CACD;AAAA,EACH;AACF;AAEA,SAAS,YAAY;AAAA,EACnB;AACF,GAEG;AAQD,QAAM,QAAQ,MAAM,SAAA;AAGpB,QAAM,gBAAgB,OAAO,MAAM,MAAM;AACzC,YAAU,MAAM;AACd,QAAI,cAAc,YAAY,MAAM,QAAQ;AAC1C,cAAQ,MAAM,0DAA0D;AACxE,oBAAc,UAAU,MAAM;AAAA,IAChC;AAAA,EACF,GAAG,CAAC,MAAM,MAAM,CAAC;AAEjB,aAAW,CAACA,OAAM,KAAK,KAAK,OAAO;AACjC,cAAU,MAAM;AACd,YAAM,IAAIA,OAAM,KAAK;AAAA,IACvB,GAAG,CAAC,OAAO,KAAK,CAAC;AAAA,EACnB;AACA,SAAO;AACT;AAEO,MAAM,kBAAkB,KAAA;AAExB,MAAM,qBAAqB,KAAmC,CAAC,QAAQ;AAC5E,QAAM,QAAQ,IAAI,eAAe;AACjC,MAAI,CAAC,MAAO,QAAO;AACnB,QAAM,8BAAc,IAAA;AACpB,QAAM,QAAQ,CAAC,SAAS;AACtB,YAAQ,IAAI,KAAK,SAAS,IAAI;AAAA,EAChC,CAAC;AACD,SAAO;AACT,CAAC;"}

package/dist/data-provider/fetch.cjs

@@ -0,0 +1,210 @@
+"use strict";
+Object.defineProperty(exports, Symbol.toStringTag, { value: "Module" });
+const uiComponents = require("@macrostrat/ui-components");
+const crossFetch = require("cross-fetch");
+const topojsonClient = require("topojson-client");
+const d3Geo = require("d3-geo");
+function createScopedFetch(baseURL) {
+  return function(url, options = void 0) {
+    return crossFetch(baseURL + url, options);
+  };
+}
+const defaultFetch = createScopedFetch("https://macrostrat.org/api/v2");
+async function fetchAllColumns(options = {}) {
+  const {
+    apiBaseURL,
+    projectID,
+    format = "topojson",
+    statusCode,
+    fetch = crossFetch
+  } = options;
+  let args = { format };
+  if (projectID != null) {
+    args = { ...args, project_id: projectID };
+  }
+  let _statusCode = void 0;
+  if (Array.isArray(statusCode)) {
+    _statusCode = statusCode.join(",");
+  } else if (statusCode != null) {
+    _statusCode = statusCode;
+  }
+  args.statusCode = _statusCode;
+  if (projectID == null) {
+    args = { ...args, all: true };
+  }
+  let url = "/columns";
+  if (apiBaseURL != null) {
+    url = uiComponents.joinURL(apiBaseURL, url);
+  }
+  url = uiComponents.addQueryString(url, args);
+  const res = await fetch(url, {
+    method: "GET",
+    headers: {
+      "Content-Type": "application/json"
+    }
+  });
+  if (res == null) {
+    return null;
+  }
+  const data = await res.json();
+  return postProcessColumns(columnProcessors[format](data));
+}
+function useColumnFeatures({
+  apiRoute = "/columns",
+  status_code,
+  project_id,
+  format = "geojson"
+}) {
+  let all = void 0;
+  if (status_code == null && project_id == null) {
+    all = true;
+  }
+  const processor = columnProcessors[format];
+  return uiComponents.useAPIResult(
+    apiRoute,
+    { format, all, status_code, project_id },
+    processor
+  );
+}
+function processGeoJSON(res) {
+  return processGeoJSONBare(res?.success?.data);
+}
+function processGeoJSONBare(res) {
+  return res?.features;
+}
+function processTopoJSON(res) {
+  try {
+    const { data } = res.success;
+    const { features: f } = topojsonClient.feature(data, data.objects.output);
+    return f;
+  } catch (err) {
+    console.error(err);
+    return [];
+  }
+}
+function postProcessColumns(columns) {
+  return promoteColumnIDs(
+    convertSmallAreasToPoints(removeFeaturesWithoutGeometry(columns))
+  );
+}
+function promoteColumnIDs(features) {
+  return features.map((f, i) => {
+    return {
+      id: f.properties?.col_id,
+      ...f
+    };
+  });
+}
+function removeFeaturesWithoutGeometry(features) {
+  return features.filter((f) => f.geometry != null);
+}
+function convertSmallAreasToPoints(features) {
+  return features.map((f) => {
+    if (d3Geo.geoArea(f.geometry) < 1e-8) {
+      const centroid = f.geometry.coordinates[0][0];
+      f.geometry = {
+        type: "Point",
+        coordinates: centroid
+      };
+    }
+    return f;
+  });
+}
+const columnProcessors = {
+  topojson: processTopoJSON,
+  geojson: processGeoJSON,
+  geojson_bare: processGeoJSONBare
+};
+async function unwrapResponse(res) {
+  if (res == null) {
+    return null;
+  }
+  const resData = await res.json();
+  return resData["success"]["data"];
+}
+async function fetchLithologies(fetch = defaultFetch) {
+  const res = await fetch("/defs/lithologies?all");
+  return await unwrapResponse(res);
+}
+async function fetchIntervals(timescaleID, fetch = defaultFetch) {
+  let url = `/defs/intervals`;
+  if (timescaleID != null) {
+    url += `?timescale_id=${timescaleID}`;
+  } else {
+    url += "?all";
+  }
+  const res = await fetch(url);
+  return await unwrapResponse(res);
+}
+async function fetchEnvironments(fetch = defaultFetch) {
+  const res = await fetch("/defs/environments?all");
+  return await unwrapResponse(res);
+}
+async function fetchRefs(refs, fetch = defaultFetch) {
+  let url = `/defs/refs`;
+  if (refs.length == 0) {
+    return [];
+  }
+  url += "?ref_id=" + refs.join(",");
+  const res = await fetch(url);
+  return await unwrapResponse(res);
+}
+async function fetchStratNames(names, fetch = defaultFetch) {
+  let url = `/defs/strat_names`;
+  if (names.length == 0) {
+    return [];
+  }
+  url += "?strat_name_id=" + names.join(",");
+  const res = await fetch(url);
+  return await unwrapResponse(res);
+}
+async function fetchUnits(columns, fetch = defaultFetch) {
+  const params = new URLSearchParams();
+  params.append("response", "long");
+  if (columns.length == 0) {
+    return [];
+  }
+  const col_string = columns.map((column) => column.toString()).join(",");
+  params.append("col_id", col_string);
+  const res = await fetch("/units?" + params.toString());
+  const data = await res.json();
+  if (!data.success) {
+    throw new Error("Failed to fetch column units");
+  }
+  const units = data.success.data;
+  const unitsMap = /* @__PURE__ */ new Map();
+  for (const unit of units) {
+    const colID = unit.col_id;
+    if (!unitsMap.has(colID)) {
+      unitsMap.set(colID, []);
+    }
+    unitsMap.get(colID).push(unit);
+  }
+  const result = [];
+  for (const colID of columns) {
+    result.push({ columnID: colID, units: unitsMap.get(colID) || [] });
+  }
+  return result;
+}
+async function fetchColumnUnits(col_id, fetch = defaultFetch) {
+  const params = new URLSearchParams();
+  params.append("response", "long");
+  params.append("col_id", col_id.toString());
+  const res = await fetch("/units?" + params.toString());
+  const data = await res.json();
+  if (!data.success) {
+    throw new Error("Failed to fetch column units");
+  }
+  const units = data.success.data;
+  return { columnID: col_id, units };
+}
+exports.fetchAllColumns = fetchAllColumns;
+exports.fetchColumnUnits = fetchColumnUnits;
+exports.fetchEnvironments = fetchEnvironments;
+exports.fetchIntervals = fetchIntervals;
+exports.fetchLithologies = fetchLithologies;
+exports.fetchRefs = fetchRefs;
+exports.fetchStratNames = fetchStratNames;
+exports.fetchUnits = fetchUnits;
+exports.useColumnFeatures = useColumnFeatures;
+//# sourceMappingURL=fetch.cjs.map

package/dist/data-provider/fetch.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"fetch.cjs","sources":["../../src/data-provider/fetch.ts"],"sourcesContent":["import {\n  ColumnGeoJSONRecord,\n  ColumnGeoJSONRecordWithID,\n  MacrostratRef,\n  StratName,\n  UnitLong,\n} from \"@macrostrat/api-types\";\nimport {\n  addQueryString,\n  joinURL,\n  useAPIResult,\n} from \"@macrostrat/ui-components\";\nimport crossFetch from \"cross-fetch\";\nimport { feature } from \"topojson-client\";\nimport { geoArea } from \"d3-geo\";\n\nfunction createScopedFetch(baseURL: string) {\n  return function (url: string, options: RequestInit | undefined = undefined) {\n    return crossFetch(baseURL + url, options);\n  };\n}\n\nconst defaultFetch = createScopedFetch(\"https://macrostrat.org/api/v2\");\n\nexport type ColumnStatusCode = \"in process\" | \"active\" | \"obsolete\";\n\nexport interface ColumnFetchOptions {\n  apiBaseURL?: string;\n  projectID?: number;\n  statusCode?: ColumnStatusCode | ColumnStatusCode[];\n  format?: \"geojson\" | \"topojson\" | \"geojson_bare\";\n  fetch?: any;\n}\n\nexport async function fetchAllColumns(\n  options: ColumnFetchOptions = {},\n): Promise<ColumnGeoJSONRecord[]> {\n  const {\n    apiBaseURL,\n    projectID,\n    format = \"topojson\",\n    statusCode,\n    fetch = crossFetch,\n  } = options;\n\n  let args: any = { format };\n  if (projectID != null) {\n    args = { ...args, project_id: projectID };\n  }\n  let _statusCode: string | undefined = undefined;\n  if (Array.isArray(statusCode)) {\n    _statusCode = statusCode.join(\",\");\n  } else if (statusCode != null) {\n    _statusCode = statusCode;\n  }\n  args.statusCode = _statusCode;\n\n  if (projectID == null) {\n    args = { ...args, all: true };\n  }\n\n  let url = \"/columns\";\n  if (apiBaseURL != null) {\n    url = joinURL(apiBaseURL, url);\n  }\n\n  // Try with fetch\n  url = addQueryString(url, args);\n\n  const res = await fetch(url, {\n    method: \"GET\",\n    headers: {\n      \"Content-Type\": \"application/json\",\n    },\n  });\n\n  if (res == null) {\n    return null;\n  }\n\n  // Get JSON\n  const data = await res.json();\n  return postProcessColumns(columnProcessors[format](data));\n}\n\nexport function useColumnFeatures({\n  apiRoute = \"/columns\",\n  status_code,\n  project_id,\n  format = \"geojson\",\n}) {\n  let all: boolean = undefined;\n  if (status_code == null && project_id == null) {\n    all = true;\n  }\n\n  const processor = columnProcessors[format];\n\n  return useAPIResult(\n    apiRoute,\n    { format, all, status_code, project_id },\n    processor,\n  );\n}\n\nfunction processGeoJSON(res) {\n  return processGeoJSONBare(res?.success?.data);\n}\n\nfunction processGeoJSONBare(res) {\n  return res?.features;\n}\n\nfunction processTopoJSON(res) {\n  try {\n    const { data } = res.success;\n    const { features: f } = feature(data, data.objects.output) as any;\n    return f;\n  } catch (err) {\n    console.error(err);\n    return [];\n  }\n}\n\nfunction postProcessColumns(columns) {\n  return promoteColumnIDs(\n    convertSmallAreasToPoints(removeFeaturesWithoutGeometry(columns)),\n  );\n}\n\nfunction promoteColumnIDs(\n  features: ColumnGeoJSONRecord[],\n): ColumnGeoJSONRecordWithID[] {\n  return features.map((f, i) => {\n    return {\n      id: f.properties?.col_id,\n      ...f,\n    };\n  });\n}\n\nfunction removeFeaturesWithoutGeometry(features) {\n  return features.filter((f) => f.geometry != null);\n}\n\nfunction convertSmallAreasToPoints(features) {\n  return features.map((f) => {\n    // GeoArea takes a long time to run. We are really more worried about points that are zero-area\n    if (geoArea(f.geometry) < 1e-8) {\n      const centroid = f.geometry.coordinates[0][0];\n      f.geometry = {\n        type: \"Point\",\n        coordinates: centroid,\n      };\n    }\n    return f;\n  });\n}\n\nconst columnProcessors = {\n  topojson: processTopoJSON,\n  geojson: processGeoJSON,\n  geojson_bare: processGeoJSONBare,\n};\n\nasync function unwrapResponse(res) {\n  if (res == null) {\n    return null;\n  }\n  const resData = await res.json();\n  return resData[\"success\"][\"data\"];\n}\n\nexport async function fetchLithologies(fetch = defaultFetch) {\n  const res = await fetch(\"/defs/lithologies?all\");\n  return await unwrapResponse(res);\n}\n\nexport async function fetchIntervals(\n  timescaleID: number | null,\n  fetch = defaultFetch,\n) {\n  let url = `/defs/intervals`;\n  if (timescaleID != null) {\n    url += `?timescale_id=${timescaleID}`;\n  } else {\n    url += \"?all\";\n  }\n  const res = await fetch(url);\n  return await unwrapResponse(res);\n}\n\nexport async function fetchEnvironments(fetch = defaultFetch) {\n  const res = await fetch(\"/defs/environments?all\");\n  return await unwrapResponse(res);\n}\n\nexport async function fetchRefs(\n  refs: number[],\n  fetch = defaultFetch,\n): Promise<MacrostratRef[]> {\n  let url = `/defs/refs`;\n  if (refs.length == 0) {\n    return [];\n  }\n  url += \"?ref_id=\" + refs.join(\",\");\n  const res = await fetch(url);\n  return await unwrapResponse(res);\n}\n\nexport async function fetchStratNames(\n  names: number[],\n  fetch = defaultFetch,\n): Promise<StratName[]> {\n  let url = `/defs/strat_names`;\n  if (names.length == 0) {\n    return [];\n  }\n  url += \"?strat_name_id=\" + names.join(\",\");\n  const res = await fetch(url);\n  return await unwrapResponse(res);\n}\n\nexport type ColumnData = {\n  units: UnitLong[];\n  columnID: number;\n};\n\nexport async function fetchUnits(\n  columns: number[],\n  fetch = defaultFetch,\n): Promise<ColumnData[]> {\n  const params = new URLSearchParams();\n  params.append(\"response\", \"long\");\n\n  if (columns.length == 0) {\n    return [];\n  }\n\n  const col_string = columns.map((column) => column.toString()).join(\",\");\n  params.append(\"col_id\", col_string);\n\n  const res = await fetch(\"/units\" + \"?\" + params.toString());\n  const data = await res.json();\n  if (!data.success) {\n    throw new Error(\"Failed to fetch column units\");\n  }\n  const units = data.success.data;\n  const unitsMap = new Map<number, UnitLong[]>();\n  for (const unit of units) {\n    const colID = unit.col_id;\n    if (!unitsMap.has(colID)) {\n      unitsMap.set(colID, []);\n    }\n    unitsMap.get(colID).push(unit);\n  }\n  const result: ColumnData[] = [];\n  for (const colID of columns) {\n    result.push({ columnID: colID, units: unitsMap.get(colID) || [] });\n  }\n  return result;\n}\n\nexport async function fetchColumnUnits(\n  col_id: number,\n  fetch = 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package/dist/data-provider/fetch.d.ts

@@ -0,0 +1,27 @@
+import { ColumnGeoJSONRecord, MacrostratRef, StratName, UnitLong } from '@macrostrat/api-types';
+export type ColumnStatusCode = "in process" | "active" | "obsolete";
+export interface ColumnFetchOptions {
+    apiBaseURL?: string;
+    projectID?: number;
+    statusCode?: ColumnStatusCode | ColumnStatusCode[];
+    format?: "geojson" | "topojson" | "geojson_bare";
+    fetch?: any;
+}
+export declare function fetchAllColumns(options?: ColumnFetchOptions): Promise<ColumnGeoJSONRecord[]>;
+export declare function useColumnFeatures({ apiRoute, status_code, project_id, format, }: {
+    apiRoute?: string;
+    status_code: any;
+    project_id: any;
+    format?: string;
+}): unknown;
+export declare function fetchLithologies(fetch?: (url: string, options?: RequestInit | undefined) => Promise<Response>): Promise<any>;
+export declare function fetchIntervals(timescaleID: number | null, fetch?: (url: string, options?: RequestInit | undefined) => Promise<Response>): Promise<any>;
+export declare function fetchEnvironments(fetch?: (url: string, options?: RequestInit | undefined) => Promise<Response>): Promise<any>;
+export declare function fetchRefs(refs: number[], fetch?: (url: string, options?: RequestInit | undefined) => Promise<Response>): Promise<MacrostratRef[]>;
+export declare function fetchStratNames(names: number[], fetch?: (url: string, options?: RequestInit | undefined) => Promise<Response>): Promise<StratName[]>;
+export type ColumnData = {
+    units: UnitLong[];
+    columnID: number;
+};
+export declare function fetchUnits(columns: number[], fetch?: (url: string, options?: RequestInit | undefined) => Promise<Response>): Promise<ColumnData[]>;
+export declare function fetchColumnUnits(col_id: number, fetch?: (url: string, options?: RequestInit | undefined) => Promise<Response>): Promise<ColumnData>;

package/dist/data-provider/fetch.js

@@ -0,0 +1,210 @@
+import { joinURL, addQueryString, useAPIResult } from "@macrostrat/ui-components";
+import crossFetch from "cross-fetch";
+import { feature } from "topojson-client";
+import { geoArea } from "d3-geo";
+function createScopedFetch(baseURL) {
+  return function(url, options = void 0) {
+    return crossFetch(baseURL + url, options);
+  };
+}
+const defaultFetch = createScopedFetch("https://macrostrat.org/api/v2");
+async function fetchAllColumns(options = {}) {
+  const {
+    apiBaseURL,
+    projectID,
+    format = "topojson",
+    statusCode,
+    fetch = crossFetch
+  } = options;
+  let args = { format };
+  if (projectID != null) {
+    args = { ...args, project_id: projectID };
+  }
+  let _statusCode = void 0;
+  if (Array.isArray(statusCode)) {
+    _statusCode = statusCode.join(",");
+  } else if (statusCode != null) {
+    _statusCode = statusCode;
+  }
+  args.statusCode = _statusCode;
+  if (projectID == null) {
+    args = { ...args, all: true };
+  }
+  let url = "/columns";
+  if (apiBaseURL != null) {
+    url = joinURL(apiBaseURL, url);
+  }
+  url = addQueryString(url, args);
+  const res = await fetch(url, {
+    method: "GET",
+    headers: {
+      "Content-Type": "application/json"
+    }
+  });
+  if (res == null) {
+    return null;
+  }
+  const data = await res.json();
+  return postProcessColumns(columnProcessors[format](data));
+}
+function useColumnFeatures({
+  apiRoute = "/columns",
+  status_code,
+  project_id,
+  format = "geojson"
+}) {
+  let all = void 0;
+  if (status_code == null && project_id == null) {
+    all = true;
+  }
+  const processor = columnProcessors[format];
+  return useAPIResult(
+    apiRoute,
+    { format, all, status_code, project_id },
+    processor
+  );
+}
+function processGeoJSON(res) {
+  return processGeoJSONBare(res?.success?.data);
+}
+function processGeoJSONBare(res) {
+  return res?.features;
+}
+function processTopoJSON(res) {
+  try {
+    const { data } = res.success;
+    const { features: f } = feature(data, data.objects.output);
+    return f;
+  } catch (err) {
+    console.error(err);
+    return [];
+  }
+}
+function postProcessColumns(columns) {
+  return promoteColumnIDs(
+    convertSmallAreasToPoints(removeFeaturesWithoutGeometry(columns))
+  );
+}
+function promoteColumnIDs(features) {
+  return features.map((f, i) => {
+    return {
+      id: f.properties?.col_id,
+      ...f
+    };
+  });
+}
+function removeFeaturesWithoutGeometry(features) {
+  return features.filter((f) => f.geometry != null);
+}
+function convertSmallAreasToPoints(features) {
+  return features.map((f) => {
+    if (geoArea(f.geometry) < 1e-8) {
+      const centroid = f.geometry.coordinates[0][0];
+      f.geometry = {
+        type: "Point",
+        coordinates: centroid
+      };
+    }
+    return f;
+  });
+}
+const columnProcessors = {
+  topojson: processTopoJSON,
+  geojson: processGeoJSON,
+  geojson_bare: processGeoJSONBare
+};
+async function unwrapResponse(res) {
+  if (res == null) {
+    return null;
+  }
+  const resData = await res.json();
+  return resData["success"]["data"];
+}
+async function fetchLithologies(fetch = defaultFetch) {
+  const res = await fetch("/defs/lithologies?all");
+  return await unwrapResponse(res);
+}
+async function fetchIntervals(timescaleID, fetch = defaultFetch) {
+  let url = `/defs/intervals`;
+  if (timescaleID != null) {
+    url += `?timescale_id=${timescaleID}`;
+  } else {
+    url += "?all";
+  }
+  const res = await fetch(url);
+  return await unwrapResponse(res);
+}
+async function fetchEnvironments(fetch = defaultFetch) {
+  const res = await fetch("/defs/environments?all");
+  return await unwrapResponse(res);
+}
+async function fetchRefs(refs, fetch = defaultFetch) {
+  let url = `/defs/refs`;
+  if (refs.length == 0) {
+    return [];
+  }
+  url += "?ref_id=" + refs.join(",");
+  const res = await fetch(url);
+  return await unwrapResponse(res);
+}
+async function fetchStratNames(names, fetch = defaultFetch) {
+  let url = `/defs/strat_names`;
+  if (names.length == 0) {
+    return [];
+  }
+  url += "?strat_name_id=" + names.join(",");
+  const res = await fetch(url);
+  return await unwrapResponse(res);
+}
+async function fetchUnits(columns, fetch = defaultFetch) {
+  const params = new URLSearchParams();
+  params.append("response", "long");
+  if (columns.length == 0) {
+    return [];
+  }
+  const col_string = columns.map((column) => column.toString()).join(",");
+  params.append("col_id", col_string);
+  const res = await fetch("/units?" + params.toString());
+  const data = await res.json();
+  if (!data.success) {
+    throw new Error("Failed to fetch column units");
+  }
+  const units = data.success.data;
+  const unitsMap = /* @__PURE__ */ new Map();
+  for (const unit of units) {
+    const colID = unit.col_id;
+    if (!unitsMap.has(colID)) {
+      unitsMap.set(colID, []);
+    }
+    unitsMap.get(colID).push(unit);
+  }
+  const result = [];
+  for (const colID of columns) {
+    result.push({ columnID: colID, units: unitsMap.get(colID) || [] });
+  }
+  return result;
+}
+async function fetchColumnUnits(col_id, fetch = defaultFetch) {
+  const params = new URLSearchParams();
+  params.append("response", "long");
+  params.append("col_id", col_id.toString());
+  const res = await fetch("/units?" + params.toString());
+  const data = await res.json();
+  if (!data.success) {
+    throw new Error("Failed to fetch column units");
+  }
+  const units = data.success.data;
+  return { columnID: col_id, units };
+}
+export {
+  fetchAllColumns,
+  fetchColumnUnits,
+  fetchEnvironments,
+  fetchIntervals,
+  fetchLithologies,
+  fetchRefs,
+  fetchStratNames,
+  fetchUnits,
+  useColumnFeatures
+};
+//# sourceMappingURL=fetch.js.map

package/dist/data-provider/fetch.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"fetch.js","sources":["../../src/data-provider/fetch.ts"],"sourcesContent":["import {\n  ColumnGeoJSONRecord,\n  ColumnGeoJSONRecordWithID,\n  MacrostratRef,\n  StratName,\n  UnitLong,\n} from \"@macrostrat/api-types\";\nimport {\n  addQueryString,\n  joinURL,\n  useAPIResult,\n} from \"@macrostrat/ui-components\";\nimport crossFetch from \"cross-fetch\";\nimport { feature } from \"topojson-client\";\nimport { geoArea } from \"d3-geo\";\n\nfunction createScopedFetch(baseURL: string) {\n  return function (url: string, options: RequestInit | undefined = undefined) {\n    return crossFetch(baseURL + url, options);\n  };\n}\n\nconst defaultFetch = createScopedFetch(\"https://macrostrat.org/api/v2\");\n\nexport type ColumnStatusCode = \"in process\" | \"active\" | \"obsolete\";\n\nexport interface ColumnFetchOptions {\n  apiBaseURL?: string;\n  projectID?: number;\n  statusCode?: ColumnStatusCode | ColumnStatusCode[];\n  format?: \"geojson\" | \"topojson\" | \"geojson_bare\";\n  fetch?: any;\n}\n\nexport async function fetchAllColumns(\n  options: ColumnFetchOptions = {},\n): Promise<ColumnGeoJSONRecord[]> {\n  const {\n    apiBaseURL,\n    projectID,\n    format = \"topojson\",\n    statusCode,\n    fetch = crossFetch,\n  } = options;\n\n  let args: any = { format };\n  if (projectID != null) {\n    args = { ...args, project_id: projectID };\n  }\n  let _statusCode: string | undefined = undefined;\n  if (Array.isArray(statusCode)) {\n    _statusCode = statusCode.join(\",\");\n  } else if (statusCode != null) {\n    _statusCode = statusCode;\n  }\n  args.statusCode = _statusCode;\n\n  if (projectID == null) {\n    args = { ...args, all: true };\n  }\n\n  let url = \"/columns\";\n  if (apiBaseURL != null) {\n    url = joinURL(apiBaseURL, url);\n  }\n\n  // Try with fetch\n  url = addQueryString(url, args);\n\n  const res = await fetch(url, {\n    method: \"GET\",\n    headers: {\n      \"Content-Type\": \"application/json\",\n    },\n  });\n\n  if (res == null) {\n    return null;\n  }\n\n  // Get JSON\n  const data = await res.json();\n  return postProcessColumns(columnProcessors[format](data));\n}\n\nexport function useColumnFeatures({\n  apiRoute = \"/columns\",\n  status_code,\n  project_id,\n  format = \"geojson\",\n}) {\n  let all: boolean = undefined;\n  if (status_code == null && project_id == null) {\n    all = true;\n  }\n\n  const processor = columnProcessors[format];\n\n  return useAPIResult(\n    apiRoute,\n    { format, all, status_code, project_id },\n    processor,\n  );\n}\n\nfunction processGeoJSON(res) {\n  return processGeoJSONBare(res?.success?.data);\n}\n\nfunction processGeoJSONBare(res) {\n  return res?.features;\n}\n\nfunction processTopoJSON(res) {\n  try {\n    const { data } = res.success;\n    const { features: f } = feature(data, data.objects.output) as any;\n    return f;\n  } catch (err) {\n    console.error(err);\n    return [];\n  }\n}\n\nfunction postProcessColumns(columns) {\n  return promoteColumnIDs(\n    convertSmallAreasToPoints(removeFeaturesWithoutGeometry(columns)),\n  );\n}\n\nfunction promoteColumnIDs(\n  features: ColumnGeoJSONRecord[],\n): ColumnGeoJSONRecordWithID[] {\n  return features.map((f, i) => {\n    return {\n      id: f.properties?.col_id,\n      ...f,\n    };\n  });\n}\n\nfunction removeFeaturesWithoutGeometry(features) {\n  return features.filter((f) => f.geometry != null);\n}\n\nfunction convertSmallAreasToPoints(features) {\n  return features.map((f) => {\n    // GeoArea takes a long time to run. We are really more worried about points that are zero-area\n    if (geoArea(f.geometry) < 1e-8) {\n      const centroid = f.geometry.coordinates[0][0];\n      f.geometry = {\n        type: \"Point\",\n        coordinates: centroid,\n      };\n    }\n    return f;\n  });\n}\n\nconst columnProcessors = {\n  topojson: processTopoJSON,\n  geojson: processGeoJSON,\n  geojson_bare: processGeoJSONBare,\n};\n\nasync function unwrapResponse(res) {\n  if (res == null) {\n    return null;\n  }\n  const resData = await res.json();\n  return resData[\"success\"][\"data\"];\n}\n\nexport async function fetchLithologies(fetch = defaultFetch) {\n  const res = await fetch(\"/defs/lithologies?all\");\n  return await unwrapResponse(res);\n}\n\nexport async function fetchIntervals(\n  timescaleID: number | null,\n  fetch = defaultFetch,\n) {\n  let url = `/defs/intervals`;\n  if (timescaleID != null) {\n    url += `?timescale_id=${timescaleID}`;\n  } else {\n    url += \"?all\";\n  }\n  const res = await fetch(url);\n  return await unwrapResponse(res);\n}\n\nexport async function fetchEnvironments(fetch = defaultFetch) {\n  const res = await fetch(\"/defs/environments?all\");\n  return await unwrapResponse(res);\n}\n\nexport async function fetchRefs(\n  refs: number[],\n  fetch = defaultFetch,\n): Promise<MacrostratRef[]> {\n  let url = `/defs/refs`;\n  if (refs.length == 0) {\n    return [];\n  }\n  url += \"?ref_id=\" + refs.join(\",\");\n  const res = await fetch(url);\n  return await unwrapResponse(res);\n}\n\nexport async function fetchStratNames(\n  names: number[],\n  fetch = defaultFetch,\n): Promise<StratName[]> {\n  let url = `/defs/strat_names`;\n  if (names.length == 0) {\n    return [];\n  }\n  url += \"?strat_name_id=\" + names.join(\",\");\n  const res = await fetch(url);\n  return await unwrapResponse(res);\n}\n\nexport type ColumnData = {\n  units: UnitLong[];\n  columnID: number;\n};\n\nexport async function fetchUnits(\n  columns: number[],\n  fetch = defaultFetch,\n): Promise<ColumnData[]> {\n  const params = new URLSearchParams();\n  params.append(\"response\", \"long\");\n\n  if (columns.length == 0) {\n    return [];\n  }\n\n  const col_string = columns.map((column) => column.toString()).join(\",\");\n  params.append(\"col_id\", col_string);\n\n  const res = await fetch(\"/units\" + \"?\" + params.toString());\n  const data = await res.json();\n  if (!data.success) {\n    throw new Error(\"Failed to fetch column units\");\n  }\n  const units = data.success.data;\n  const unitsMap = new Map<number, UnitLong[]>();\n  for (const unit of units) {\n    const colID = unit.col_id;\n    if (!unitsMap.has(colID)) {\n      unitsMap.set(colID, []);\n    }\n    unitsMap.get(colID).push(unit);\n  }\n  const result: ColumnData[] = [];\n  for (const colID of columns) {\n    result.push({ columnID: colID, units: unitsMap.get(colID) || [] });\n  }\n  return result;\n}\n\nexport async function fetchColumnUnits(\n  col_id: number,\n  fetch = 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package/dist/data-provider/index.d.ts

@@ -0,0 +1,5 @@
+export * from './fetch';
+export * from './base';
+export * from './column-nav';
+export * from './store';
+export * from './unit-selection';