@macrostrat/column-views 1.0.3 → 2.0.0

package/src/unit-details/panel.ts

@@ -0,0 +1,523 @@
+import hyper from "@macrostrat/hyper";
+import styles from "./panel.module.sass";
+import { JSONView } from "@macrostrat/ui-components";
+import { Button, ButtonGroup } from "@blueprintjs/core";
+import { ReactNode, useMemo, useState } from "react";
+import {
+  DataField,
+  EnvironmentsList,
+  IntervalShort,
+  IntervalTag,
+  ItemList,
+  LithologyList,
+  LithologyTagFeature,
+  Parenthetical,
+  Value,
+} from "@macrostrat/data-components";
+import { useMacrostratData, useMacrostratDefs } from "../data-provider";
+import { Environment, UnitLong, UnitLongFull } from "@macrostrat/api-types";
+import { defaultNameFunction } from "../units/names";
+import classNames from "classnames";
+
+const h = hyper.styled(styles);
+
+export function UnitDetailsPanel({
+  unit,
+  onClose,
+  className,
+  features = new Set<UnitDetailsFeature>([
+    UnitDetailsFeature.AdjacentUnits,
+    UnitDetailsFeature.OutcropType,
+    UnitDetailsFeature.JSONToggle,
+    UnitDetailsFeature.DepthRange,
+  ]),
+  lithologyFeatures,
+  actions,
+  selectUnit,
+  columnUnits,
+}: {
+  unit: any;
+  onClose?: any;
+  showLithologyProportions?: boolean;
+  className?: string;
+  actions?: ReactNode;
+  features?: Set<UnitDetailsFeature>;
+  lithologyFeatures?: Set<LithologyTagFeature>;
+  columnUnits?: UnitLong[];
+  selectUnit?: (unitID: number) => void;
+}) {
+  const [showJSON, setShowJSON] = useState(false);
+
+  let content = null;
+  if (showJSON) {
+    content = h(JSONView, { data: unit, showRoot: false });
+  } else {
+    content = h(UnitDetailsContent, { unit, features, lithologyFeatures });
+  }
+
+  let title = defaultNameFunction(unit);
+
+  let hiddenActions = null;
+  if (features.has(UnitDetailsFeature.JSONToggle)) {
+    hiddenActions = h(Button, {
+      icon: "code",
+      small: true,
+      minimal: true,
+      key: "json-view-toggle",
+      className: classNames("json-view-toggle", { enabled: setShowJSON }),
+      onClick(evt) {
+        setShowJSON(!showJSON);
+        evt.stopPropagation();
+      },
+    });
+  }
+
+  return h("div.unit-details-panel", { className }, [
+    h(LegendPanelHeader, {
+      onClose,
+      title,
+      id: unit.unit_id,
+      actions,
+      hiddenActions,
+    }),
+    h("div.unit-details-content-holder", content),
+  ]);
+}
+
+export function LegendPanelHeader({
+  title,
+  id,
+  onClose,
+  actions = null,
+  hiddenActions,
+}: {
+  title?: string | null;
+  id?: number | null;
+  onClose?: () => void;
+  actions?: ReactNode | null;
+  hiddenActions?: ReactNode | null;
+}) {
+  return h("header.legend-panel-header", [
+    h("div.title-container", [
+      h.if(title != null)("h3", title),
+      h.if(hiddenActions != null)("div.hidden-actions", hiddenActions),
+    ]),
+    h("div.spacer"),
+    h.if(id != null)("code", id),
+    h.if(actions != null)(ButtonGroup, { minimal: true }, actions),
+    h.if(onClose != null)(Button, {
+      icon: "cross",
+      minimal: true,
+      small: true,
+      onClick() {
+        onClose();
+      },
+    }),
+  ]);
+}
+
+export enum UnitDetailsFeature {
+  AdjacentUnits = "adjacent-units",
+  Color = "color",
+  OutcropType = "outcrop-type",
+  JSONToggle = "json-toggle",
+  DepthRange = "depth-range",
+}
+
+function UnitDetailsContent({
+  unit,
+  selectUnit,
+  columnUnits,
+  lithologyFeatures = new Set([
+    LithologyTagFeature.Proportion,
+    LithologyTagFeature.Attributes,
+  ]),
+  features = new Set<UnitDetailsFeature>([
+    UnitDetailsFeature.AdjacentUnits,
+    UnitDetailsFeature.OutcropType,
+  ]),
+}: {
+  unit: UnitLong;
+  selectUnit?: (unitID: number) => void;
+  columnUnits?: UnitLong[];
+  lithologyFeatures?: Set<LithologyTagFeature>;
+  features?: Set<UnitDetailsFeature>;
+}) {
+  const lithMap = useMacrostratDefs("lithologies");
+  const envMap = useMacrostratDefs("environments");
+
+  const environments = enhanceEnvironments(unit.environ, envMap);
+  const lithologies = enhanceLithologies(unit.lith ?? [], lithMap);
+
+  // Create a lookup table of units if provided
+  const columnUnitsMap = useMemo(() => {
+    const map = new Map<number, UnitLong>();
+    for (const colUnit of columnUnits ?? []) {
+      map.set(colUnit.unit_id, colUnit);
+    }
+    return map;
+  }, [columnUnits]);
+
+  let outcropField = null;
+  if (features.has(UnitDetailsFeature.OutcropType)) {
+    // Determine outcrop type
+    let outcrop = unit.outcrop;
+    if (outcrop == "both") {
+      outcrop = "surface and subsurface";
+    }
+    outcropField = h(DataField, {
+      label: "Outcrop",
+      value: outcrop,
+    });
+  }
+
+  let thicknessOrHeightRange = null;
+  const [thickness, thicknessUnit] = getThickness(unit);
+  // Proxy for actual heights in t_pos and b_pos
+  if (
+    features.has(UnitDetailsFeature.DepthRange) &&
+    unit.t_pos != null &&
+    unit.b_pos != null &&
+    unit.min_thick == unit.max_thick && // We have an actual fixed height
+    unit.min_thick != 0 // Not a zero thickness
+  ) {
+    const label = unit.t_pos < unit.b_pos ? "Depth" : "Height";
+    const u1 = "m";
+
+    thicknessOrHeightRange = h(DataField, {
+      unit: u1,
+      label,
+      value: formatRange(unit.b_pos, unit.t_pos),
+      children: h(
+        Parenthetical,
+        h(Value, { value: thickness, unit: thicknessUnit })
+      ),
+    });
+  }
+  thicknessOrHeightRange ??= h(DataField, {
+    label: "Thickness",
+    value: thickness,
+    unit: thicknessUnit,
+  });
+
+  /** We are trying to move away from passing the "color" parameter in the API */
+  let colorSwatch: ReactNode = null;
+  if ("color" in unit) {
+    const unit1 = unit as UnitLongFull;
+    colorSwatch = h("div.color-swatch", {
+      style: { backgroundColor: unit1.color },
+    });
+  }
+
+  return h("div.unit-details-content", [
+    thicknessOrHeightRange,
+    h(LithologyList, {
+      label: "Lithology",
+      lithologies,
+      features: lithologyFeatures,
+    }),
+    h(AgeField, { unit }, [
+      h(Parenthetical, h(Duration, { value: unit.b_age - unit.t_age })),
+      h(IntervalProportions, { unit }),
+    ]),
+    h(EnvironmentsList, { environments }),
+    h.if(unit.strat_name_id != null)(
+      DataField,
+      {
+        label: "Stratigraphic name",
+      },
+      h("span.strat-name-id", unit.strat_name_id)
+    ),
+    outcropField,
+    h.if(features.has(UnitDetailsFeature.AdjacentUnits))([
+      h(
+        DataField,
+        { label: "Above" },
+        h(UnitIDList, { units: unit.units_above, selectUnit })
+      ),
+      h(
+        DataField,
+        { label: "Below" },
+        h(UnitIDList, { units: unit.units_below, selectUnit })
+      ),
+    ]),
+    colorSwatch,
+    h(
+      DataField,
+      { label: "Source", inline: true },
+      h(BibInfo, { refs: unit.refs })
+    ),
+  ]);
+}
+
+function getThickness(unit): [string, string] {
+  let minThickness = unit.min_thick ?? 0;
+  let maxThickness = unit.max_thick ?? unit.min_thick ?? 0;
+  let _unit = "m";
+
+  if (minThickness == 0 && maxThickness == 0) {
+    return ["Unknown", null];
+  }
+
+  if (minThickness < 0.8 && maxThickness < 1.2) {
+    // Convert to cm
+    minThickness = minThickness * 100;
+    maxThickness = maxThickness * 100;
+    _unit = "cm";
+  } else if (minThickness > 800 && maxThickness > 1200) {
+    // Convert to km
+    minThickness = minThickness / 1000;
+    maxThickness = maxThickness / 1000;
+    _unit = "km";
+  }
+
+  if (minThickness == maxThickness) {
+    return [formatSignificance(minThickness), _unit];
+  }
+
+  return [formatRange(minThickness, maxThickness), _unit];
+}
+
+function ThicknessField({ unit, label = "Thickness" }) {
+  const [value, thicknessUnit] = getThickness(unit);
+  return h(DataField, {
+    label,
+    value,
+    unit: thicknessUnit,
+  });
+}
+
+function BibInfo({ refs }) {
+  const refData = useMacrostratData("refs", refs);
+
+  if (refData == null || refData.length === 0) {
+    return null;
+  }
+
+  if (refData.length == 1) {
+    return h(Citation, { data: refData[0], tag: "span" });
+  }
+
+  return h(
+    "ul.refs",
+    refData.map((data, i) => h(Citation, { data, tag: "li", key: i }))
+  );
+}
+
+function Citation({ data, tag = "p" }) {
+  return h(tag, { className: "citation" }, [
+    h("span.authors", data.author),
+    ", ",
+    h("span.year", data.pub_year),
+    ", ",
+    h("span.title", data.ref),
+  ]);
+}
+
+function AgeField({ unit, children }) {
+  const [b_age, t_age, _unit] = getAgeRange(unit);
+
+  return h(
+    DataField,
+    {
+      label: "Age",
+      value: formatRange(b_age, t_age),
+      unit: _unit,
+    },
+    children
+  );
+}
+
+function getAgeRange(_unit) {
+  let b_age = _unit.b_age;
+  let t_age = _unit.t_age;
+  let unit = "Ma";
+
+  if (b_age < 0.8 && t_age < 1.2) {
+    b_age *= 1000;
+    t_age *= 1000;
+    unit = "ka";
+  } else if (b_age > 800 && t_age > 1200) {
+    b_age /= 1000;
+    t_age /= 1000;
+    unit = "Ga";
+  }
+
+  return [b_age, t_age, unit];
+}
+
+export function Duration({
+  value,
+  maximumFractionDigits = 2,
+  minimumFractionDigits = 0,
+}) {
+  let unit = "Myr";
+  if (value < 0.8) {
+    unit = "kyr";
+    value *= 1000;
+    if (value < 5) {
+      unit = "yr";
+      value *= 1000;
+    }
+  } else if (value > 1000) {
+    unit = "Gyr";
+    value /= 1000;
+  }
+
+  let _value = value.toLocaleString("en-US", {
+    maximumFractionDigits,
+    minimumFractionDigits,
+  });
+
+  return h(Value, { value: _value, unit });
+}
+
+function enhanceEnvironments(
+  environments: Partial<Environment>[],
+  envMap: Map<number, Environment>
+) {
+  return environments.map((env) => {
+    return {
+      ...(envMap?.get(env.environ_id) ?? {}),
+      ...env,
+    };
+  });
+}
+
+function enhanceLithologies(
+  lithologies: Partial<UnitLong["lith"]>,
+  lithMap: Map<number, any>
+) {
+  return lithologies.map((lith) => {
+    return {
+      ...(lithMap?.get(lith.lith_id) ?? {}), // get lithology details
+      ...lith, // override with the unit's specific lithology data
+    };
+  });
+}
+
+function UnitIDList({ units, selectUnit }) {
+  const u1 = units.filter((d) => d != 0);
+
+  if (u1.length === 0) {
+    return h("span.no-units", "None");
+  }
+
+  let tag = "span";
+  if (selectUnit != null) {
+    tag = "a";
+  }
+
+  return h(
+    ItemList,
+    { className: "unit-id-list" },
+    u1.map((unit) => {
+      return h(
+        tag,
+
+        {
+          className: "unit-id",
+          onClick() {
+            selectUnit?.(unit.id);
+          },
+          key: unit.id,
+        },
+        unit
+      );
+    })
+  );
+}
+
+function IntervalProportions({ unit }) {
+  const i0 = unit.b_int_id;
+  const i1 = unit.t_int_id;
+  let b_prop = unit.b_prop ?? 0;
+  let t_prop = unit.t_prop ?? 1;
+
+  const intervalMap = useMacrostratDefs("intervals");
+  const int0 = intervalMap?.get(i0) ?? {};
+
+  const interval0: IntervalShort = {
+    ...int0,
+    id: i0,
+    name: unit.b_int_name,
+  };
+
+  let p0: ReactNode = null;
+  const int1 = intervalMap?.get(i1) ?? {};
+  const p1: ReactNode = h(Proportion, { value: t_prop });
+
+  if (i0 !== i1 || b_prop !== 0 || t_prop !== 1) {
+    // We have a single interval with undefined proportions
+    p0 = h(Proportion, { value: b_prop });
+  }
+
+  if (i0 === i1 && (b_prop !== 0 || t_prop !== 1)) {
+    p0 = h("span.joint-proportion", [p0, h("span.sep", "to"), p1]);
+  }
+
+  return h("div.interval-proportions", [
+    h(IntervalTag, {
+      interval: interval0,
+      prefix: p0,
+    }),
+    h.if(i0 != i1)("span.discourage-break", [
+      h("span.sep", "to"),
+      h(IntervalTag, {
+        interval: {
+          ...int1,
+          id: i1,
+          name: unit.t_int_name,
+        },
+        prefix: p1,
+      }),
+    ]),
+  ]);
+}
+
+const formatProportion = (d) => {
+  if (d == null) return null;
+  return d.toFixed(1);
+};
+
+function Proportion({ value }) {
+  let content = null;
+  if (value == 0) {
+    content = "base";
+  } else if (value == 1) {
+    content = "top";
+  } else {
+    content = formatProportion(value * 100) + "%";
+  }
+
+  return h("span.proportion", content);
+}
+
+function formatRange(min, max, precision = null) {
+  if (min == null || max == null) return null;
+  if (min === max) {
+    return min.toFixed(precision);
+  }
+
+  return `${formatSignificance(min, precision)}–${formatSignificance(
+    max,
+    precision
+  )}`;
+}
+
+function formatSignificance(value, precision = null) {
+  // Format to preserve a reasonable number of significant figures
+  // this could be done with an easier algorithm, probably:
+
+  if (precision == null) {
+    return value.toLocaleString();
+  }
+  if (precision >= 0) {
+    return value.toFixed(precision);
+  }
+  if (precision < 0) {
+    return (
+      (value / Math.pow(10, -precision)).toFixed(0) + "0".repeat(-precision)
+    );
+  }
+}

package/src/{selection-popover.module.sass → unit-details/popover.module.sass}

@@ -13,10 +13,12 @@
     pointer-events: none
     outline: 2px solid #f22
 
-.legend-panel-outer
+  :global(.bp5-popover-content)
+    overflow: hidden
+
+.legend-panel
   width: 25em
   max-height: 60vh
-  overflow-y: scroll
   background-color: var(--panel-background-color)
 
 .legend-info-panel

package/src/unit-details/popover.ts

@@ -0,0 +1,82 @@
+import hyper from "@macrostrat/hyper";
+import { Popover } from "@blueprintjs/core";
+import styles from "./popover.module.sass";
+import { useSelectedUnit, useUnitSelectionStore } from "../units";
+import { UnitDetailsPanel } from "./panel";
+
+const h = hyper.styled(styles);
+
+export function UnitDetailsPopover({
+  style,
+  children,
+  viewportPadding = 20,
+}: {
+  style: object;
+  viewportPadding?: number;
+  children: React.ReactNode;
+}) {
+  const content = h(InteractionBarrier, children);
+
+  return h(
+    "div.popover-main",
+    {
+      style,
+    },
+    h(
+      Popover,
+      // @ts-ignore
+      {
+        content,
+        isOpen: true,
+        usePortal: false,
+        position: "right",
+        modifiers: {
+          preventOverflow: { options: { padding: viewportPadding } },
+        },
+      },
+      h("span.popover-target")
+    )
+  );
+}
+
+function InteractionBarrier({ children }) {
+  return h(
+    "div",
+    {
+      onClick(e) {
+        // Stop events from leaking to the parent
+        e.stopPropagation();
+      },
+    },
+    children
+  );
+}
+
+export function UnitSelectionPopover() {
+  const unit = useSelectedUnit();
+  const position = useUnitSelectionStore((state) => state.overlayPosition);
+  if (unit == null) {
+    return null;
+  }
+
+  return h(
+    "div.unit-popover-container",
+    h(
+      UnitDetailsPopover,
+      {
+        style: {
+          position: "absolute",
+          top: position?.y ?? 0,
+          width: position?.width ?? 100,
+          left: position?.x ?? 0,
+          height: position?.height ?? 100,
+        },
+      },
+      h(UnitDetailsPanel, {
+        unit,
+        showLithologyProportions: true,
+        className: "legend-panel",
+      })
+    )
+  );
+}

package/src/units/boxes.module.sass

@@ -1,3 +1,19 @@
 .unit-label-container
   pointer-events: none
 
+.labeled-unit
+  --column-unit-background-internal: var(--column-unit-background-color, var(--column-background-color))
+  :global(.unit-overlay)
+    font-size: 10px
+    font-style: italic
+    display: flex
+    align-items: center
+    justify-content: center
+
+  :global(.unit-label)
+    display: block
+    color: var(--column-text-color)
+    text-shadow: 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal), 0px 0px 4px var(--column-unit-background-internal)
+
+  .background
+    fill: var(--column-unit-background-internal, transparent)