@machina.ai/cell-cli 1.60.0-rc1 → 1.64.0-rc2

package/dist/src/config/extensions/update.js

@@ -7,9 +7,9 @@ import { ExtensionUpdateState, } from '../../ui/state/extensions.js';
 import { loadInstallMetadata } from '../extension.js';
 import { checkForExtensionUpdate } from './github.js';
 import { debugLogger, getErrorMessage, IntegrityDataStatus, } from '@google/gemini-cli-core';
-import * as fs from 'node:fs';
 import { copyExtension } from '../extension-manager.js';
 import { ExtensionStorage } from './storage.js';
+import { removeDirectoryWithRetry } from '../../utils/retry.js';
 export async function updateExtension(extension, extensionManager, currentState, dispatchExtensionStateUpdate, enableExtensionReloading) {
     if (currentState === ExtensionUpdateState.UPDATING) {
         return undefined;
@@ -98,7 +98,12 @@ export async function updateExtension(extension, extensionManager, currentState,
         throw e;
     }
     finally {
-        await fs.promises.rm(tempDir, { recursive: true, force: true });
+        try {
+            await removeDirectoryWithRetry(tempDir);
+        }
+        catch (cleanupError) {
+            debugLogger.warn(`Failed to clean up temp directory ${tempDir}: ${getErrorMessage(cleanupError)}`);
+        }
     }
 }
 export async function updateAllUpdatableExtensions(extensions, extensionsState, extensionManager, dispatch, enableExtensionReloading) {

package/dist/src/config/extensions/update.js.map

@@ -1 +1 @@
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+{"version":3,"file":"update.js","sourceRoot":"","sources":["../../../../src/config/extensions/update.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAEL,oBAAoB,GAErB,MAAM,8BAA8B,CAAC;AACtC,OAAO,EAAE,mBAAmB,EAAE,MAAM,iBAAiB,CAAC;AACtD,OAAO,EAAE,uBAAuB,EAAE,MAAM,aAAa,CAAC;AACtD,OAAO,EACL,WAAW,EACX,eAAe,EAEf,mBAAmB,GACpB,MAAM,yBAAyB,CAAC;AACjC,OAAO,EAAE,aAAa,EAAyB,MAAM,yBAAyB,CAAC;AAC/E,OAAO,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAC;AAChD,OAAO,EAAE,wBAAwB,EAAE,MAAM,sBAAsB,CAAC;AAQhE,MAAM,CAAC,KAAK,UAAU,eAAe,CACnC,SAA6B,EAC7B,gBAAkC,EAClC,YAAkC,EAClC,4BAAqE,EACrE,wBAAkC;IAElC,IAAI,YAAY,KAAK,oBAAoB,CAAC,QAAQ,EAAE,CAAC;QACnD,OAAO,SAAS,CAAC;IACnB,CAAC;IACD,4BAA4B,CAAC;QAC3B,IAAI,EAAE,WAAW;QACjB,OAAO,EAAE,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,oBAAoB,CAAC,QAAQ,EAAE;KACxE,CAAC,CAAC;IACH,MAAM,eAAe,GAAG,mBAAmB,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;IAE5D,IAAI,CAAC,eAAe,EAAE,IAAI,EAAE,CAAC;QAC3B,4BAA4B,CAAC;YAC3B,IAAI,EAAE,WAAW;YACjB,OAAO,EAAE,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,oBAAoB,CAAC,KAAK,EAAE;SACrE,CAAC,CAAC;QACH,MAAM,IAAI,KAAK,CACb,aAAa,SAAS,CAAC,IAAI,sCAAsC,CAClE,CAAC;IACJ,CAAC;IAED,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,gBAAgB,CAAC,wBAAwB,CAC5D,SAAS,CAAC,IAAI,EACd,eAAe,CAChB,CAAC;QAEF,IAAI,MAAM,KAAK,mBAAmB,CAAC,OAAO,EAAE,CAAC;YAC3C,MAAM,IAAI,KAAK,CAAC,wCAAwC,CAAC,CAAC;QAC5D,CAAC;IACH,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,4BAA4B,CAAC;YAC3B,IAAI,EAAE,WAAW;YACjB,OAAO,EAAE,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,oBAAoB,CAAC,KAAK,EAAE;SACrE,CAAC,CAAC;QACH,MAAM,IAAI,KAAK,CACb,aAAa,SAAS,CAAC,IAAI,uBAAuB,eAAe,CAAC,CAAC,CAAC,yCAAyC,CAC9G,CAAC;IACJ,CAAC;IAED,IAAI,eAAe,EAAE,IAAI,KAAK,MAAM,EAAE,CAAC;QACrC,4BAA4B,CAAC;YAC3B,IAAI,EAAE,WAAW;YACjB,OAAO,EAAE,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,oBAAoB,CAAC,UAAU,EAAE;SAC1E,CAAC,CAAC;QACH,MAAM,IAAI,KAAK,CAAC,oDAAoD,CAAC,CAAC;IACxE,CAAC;IAED,IAAI,SAAS,CAAC,UAAU,EAAE,CAAC;QACzB,MAAM,aAAa,GAAG,MAAM,uBAAuB,CACjD;YACE,GAAG,SAAS;YACZ,eAAe,EAAE,EAAE,GAAG,eAAe,EAAE,MAAM,EAAE,SAAS,CAAC,UAAU,EAAE;YACrE,UAAU,EAAE,SAAS;SACtB,EACD,gBAAgB,CACjB,CAAC;QACF,IACE,aAAa,KAAK,oBAAoB,CAAC,gBAAgB;YACvD,aAAa,KAAK,oBAAoB,CAAC,UAAU,EACjD,CAAC;YACD,eAAe,CAAC,MAAM,GAAG,SAAS,CAAC,UAAU,CAAC;QAChD,CAAC;IACH,CAAC;IAED,MAAM,eAAe,GAAG,SAAS,CAAC,OAAO,CAAC;IAE1C,MAAM,OAAO,GAAG,MAAM,gBAAgB,CAAC,YAAY,EAAE,CAAC;IACtD,IAAI,CAAC;QACH,MAAM,uBAAuB,GAAG,MAAM,gBAAgB,CAAC,mBAAmB,CACxE,SAAS,CAAC,IAAI,CACf,CAAC;QACF,IAAI,gBAAoC,CAAC;QACzC,IAAI,CAAC;YACH,gBAAgB,GAAG,MAAM,gBAAgB,CAAC,wBAAwB,CAChE,eAAe,EACf,uBAAuB,CACxB,CAAC;QACJ,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,4BAA4B,CAAC;gBAC3B,IAAI,EAAE,WAAW;gBACjB,OAAO,EAAE,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,oBAAoB,CAAC,KAAK,EAAE;aACrE,CAAC,CAAC;YACH,MAAM,IAAI,KAAK,CACb,+DAA+D,CAAC,EAAE,CACnE,CAAC;QACJ,CAAC;QACD,MAAM,cAAc,GAAG,gBAAgB,CAAC,OAAO,CAAC;QAChD,4BAA4B,CAAC;YAC3B,IAAI,EAAE,WAAW;YACjB,OAAO,EAAE;gBACP,IAAI,EAAE,SAAS,CAAC,IAAI;gBACpB,KAAK,EAAE,wBAAwB;oBAC7B,CAAC,CAAC,oBAAoB,CAAC,OAAO;oBAC9B,CAAC,CAAC,oBAAoB,CAAC,qBAAqB;aAC/C;SACF,CAAC,CAAC;QACH,OAAO;YACL,IAAI,EAAE,SAAS,CAAC,IAAI;YACpB,eAAe;YACf,cAAc;SACf,CAAC;IACJ,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,WAAW,CAAC,KAAK,CACf,2CAA2C,eAAe,CAAC,CAAC,CAAC,EAAE,CAChE,CAAC;QACF,4BAA4B,CAAC;YAC3B,IAAI,EAAE,WAAW;YACjB,OAAO,EAAE,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,oBAAoB,CAAC,KAAK,EAAE;SACrE,CAAC,CAAC;QACH,MAAM,aAAa,CAAC,OAAO,EAAE,SAAS,CAAC,IAAI,CAAC,CAAC;QAC7C,MAAM,CAAC,CAAC;IACV,CAAC;YAAS,CAAC;QACT,IAAI,CAAC;YACH,MAAM,wBAAwB,CAAC,OAAO,CAAC,CAAC;QAC1C,CAAC;QAAC,OAAO,YAAY,EAAE,CAAC;YACtB,WAAW,CAAC,IAAI,CACd,qCAAqC,OAAO,KAAK,eAAe,CAAC,YAAY,CAAC,EAAE,CACjF,CAAC;QACJ,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,4BAA4B,CAChD,UAAgC,EAChC,eAAmD,EACnD,gBAAkC,EAClC,QAAiD,EACjD,wBAAkC;IAElC,MAAM,OAAO,GAAG,MAAM,OAAO,CAAC,GAAG,CAC/B,UAAU;SACP,MAAM,CACL,CAAC,SAAS,EAAE,EAAE,CACZ,eAAe,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,MAAM;QAC3C,oBAAoB,CAAC,gBAAgB,CACxC;SACA,GAAG,CAAC,CAAC,SAAS,EAAE,EAAE,CACjB,eAAe,CACb,SAAS,EACT,gBAAgB,EAChB,eAAe,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAE,CAAC,MAAM,EAC3C,QAAQ,EACR,wBAAwB,CACzB,CACF,CACJ,CAAC;IACF,OAAO,OAAO,CAAC,MAAM,CACnB,CAAC,UAAU,EAAqC,EAAE,CAAC,CAAC,CAAC,UAAU,CAChE,CAAC;AACJ,CAAC;AAOD,MAAM,CAAC,KAAK,UAAU,2BAA2B,CAC/C,UAAgC,EAChC,gBAAkC,EAClC,QAAiD;IAEjD,QAAQ,CAAC,EAAE,IAAI,EAAE,mBAAmB,EAAE,CAAC,CAAC;IACxC,IAAI,CAAC;QACH,MAAM,QAAQ,GAAyB,EAAE,CAAC;QAC1C,KAAK,MAAM,SAAS,IAAI,UAAU,EAAE,CAAC;YACnC,IAAI,CAAC,SAAS,CAAC,eAAe,EAAE,CAAC;gBAC/B,QAAQ,CAAC;oBACP,IAAI,EAAE,WAAW;oBACjB,OAAO,EAAE;wBACP,IAAI,EAAE,SAAS,CAAC,IAAI;wBACpB,KAAK,EAAE,oBAAoB,CAAC,aAAa;qBAC1C;iBACF,CAAC,CAAC;gBACH,SAAS;YACX,CAAC;YACD,QAAQ,CAAC;gBACP,IAAI,EAAE,WAAW;gBACjB,OAAO,EAAE;oBACP,IAAI,EAAE,SAAS,CAAC,IAAI;oBACpB,KAAK,EAAE,oBAAoB,CAAC,oBAAoB;iBACjD;aACF,CAAC,CAAC;YACH,QAAQ,CAAC,IAAI,CACX,uBAAuB,CAAC,SAAS,EAAE,gBAAgB,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,EAAE,EAAE,CAClE,QAAQ,CAAC;gBACP,IAAI,EAAE,WAAW;gBACjB,OAAO,EAAE,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE;aACzC,CAAC,CACH,CACF,CAAC;QACJ,CAAC;QACD,MAAM,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;IAC9B,CAAC;YAAS,CAAC;QACT,QAAQ,CAAC,EAAE,IAAI,EAAE,iBAAiB,EAAE,CAAC,CAAC;IACxC,CAAC;AACH,CAAC"}

package/dist/src/config/extensions/update.test.js

@@ -137,6 +137,19 @@ describe('Extension Update Logic', () => {
                 force: true,
             });
         });
+        it('should succeed when tempDir removal transiently fails with EBUSY on Windows', async () => {
+            const ebusyError = Object.assign(new Error("EBUSY: resource busy or locked, rmdir '/tmp/mock-dir'"), { code: 'EBUSY' });
+            vi.mocked(fs.promises.rm)
+                .mockRejectedValueOnce(ebusyError)
+                .mockResolvedValueOnce(undefined);
+            const result = await updateExtension(mockExtension, mockExtensionManager, ExtensionUpdateState.UPDATE_AVAILABLE, mockDispatch);
+            expect(result).toEqual({
+                name: 'test-extension',
+                originalVersion: '1.0.0',
+                updatedVersion: '1.1.0',
+            });
+            expect(fs.promises.rm).toHaveBeenCalledTimes(2);
+        });
         it('should migrate source if migratedTo is set and an update is available', async () => {
             vi.mocked(mockExtensionManager.loadExtensionConfig).mockReturnValue(Promise.resolve({
                 name: 'test-extension',
@@ -196,6 +209,14 @@ describe('Extension Update Logic', () => {
             });
             expect(fs.promises.rm).toHaveBeenCalled();
         });
+        it('should not mask primary update error if tempDir cleanup fails in finally', async () => {
+            vi.mocked(mockExtensionManager.installOrUpdateExtension).mockRejectedValueOnce(new Error('Install failed'));
+            const cleanupError = Object.assign(new Error('EACCES: permission denied'), {
+                code: 'EACCES',
+            });
+            vi.mocked(fs.promises.rm).mockRejectedValueOnce(cleanupError);
+            await expect(updateExtension(mockExtension, mockExtensionManager, ExtensionUpdateState.UPDATE_AVAILABLE, mockDispatch)).rejects.toThrow('Updated extension not found after installation');
+        });
         describe('Integrity Verification', () => {
             it('should fail update with security alert if integrity is invalid', async () => {
                 vi.mocked(mockExtensionManager.verifyExtensionIntegrity).mockResolvedValue(IntegrityDataStatus.INVALID);

package/dist/src/config/extensions/update.test.js.map

@@ -1 +1 @@
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package/dist/src/config/mcp/mcpServerEnablement.d.ts

@@ -93,6 +93,7 @@ export declare class McpServerEnablementManager {
     /**
      * Check if server is enabled in FILE (persistent config only).
      * Does NOT include session state.
+     * Fails closed (`false`) if the config file exists on disk but cannot be read or parsed.
      */
     isFileEnabled(serverName: string): Promise<boolean>;
     /**
@@ -107,11 +108,13 @@ export declare class McpServerEnablementManager {
     /**
      * Enable a server persistently.
      * Removes the server from config file (defaults to enabled).
+     * Does not overwrite the config file if existing contents cannot be read or parsed.
      */
     enable(serverName: string): Promise<void>;
     /**
      * Disable a server persistently.
      * Adds server to config file with enabled: false.
+     * Does not overwrite the config file if existing contents cannot be read or parsed.
      */
     disable(serverName: string): Promise<void>;
     /**
@@ -141,6 +144,8 @@ export declare class McpServerEnablementManager {
     autoEnableServers(serverNames: string[]): Promise<string[]>;
     /**
      * Read config from file asynchronously.
+     * Returns `{}` if the file does not exist (`ENOENT`), or `null` if the file
+     * cannot be read or parsed as a valid JSON object.
      */
     private readConfig;
     /**

package/dist/src/config/mcp/mcpServerEnablement.js

@@ -138,9 +138,13 @@ export class McpServerEnablementManager {
     /**
      * Check if server is enabled in FILE (persistent config only).
      * Does NOT include session state.
+     * Fails closed (`false`) if the config file exists on disk but cannot be read or parsed.
      */
     async isFileEnabled(serverName) {
         const config = await this.readConfig();
+        if (!config) {
+            return false;
+        }
         const state = config[normalizeServerId(serverName)];
         return state?.enabled ?? true;
     }
@@ -163,10 +167,14 @@ export class McpServerEnablementManager {
     /**
      * Enable a server persistently.
      * Removes the server from config file (defaults to enabled).
+     * Does not overwrite the config file if existing contents cannot be read or parsed.
      */
     async enable(serverName) {
         const normalizedName = normalizeServerId(serverName);
         const config = await this.readConfig();
+        if (!config) {
+            return;
+        }
         if (normalizedName in config) {
             delete config[normalizedName];
             await this.writeConfig(config);
@@ -175,9 +183,13 @@ export class McpServerEnablementManager {
     /**
      * Disable a server persistently.
      * Adds server to config file with enabled: false.
+     * Does not overwrite the config file if existing contents cannot be read or parsed.
      */
     async disable(serverName) {
         const config = await this.readConfig();
+        if (!config) {
+            return;
+        }
         config[normalizeServerId(serverName)] = { enabled: false };
         await this.writeConfig(config);
     }
@@ -237,7 +249,9 @@ export class McpServerEnablementManager {
             let wasDisabled = false;
             if (state.isPersistentDisabled) {
                 await this.enable(normalizedName);
-                wasDisabled = true;
+                if (await this.isFileEnabled(normalizedName)) {
+                    wasDisabled = true;
+                }
             }
             if (state.isSessionDisabled) {
                 this.clearSessionDisable(normalizedName);
@@ -251,12 +265,21 @@ export class McpServerEnablementManager {
     }
     /**
      * Read config from file asynchronously.
+     * Returns `{}` if the file does not exist (`ENOENT`), or `null` if the file
+     * cannot be read or parsed as a valid JSON object.
      */
     async readConfig() {
         try {
             const content = await fs.readFile(this.configFilePath, 'utf-8');
+            const parsed = JSON.parse(content);
+            if (typeof parsed !== 'object' ||
+                parsed === null ||
+                Array.isArray(parsed)) {
+                coreEvents.emitFeedback('error', 'Failed to read MCP server enablement config.', new Error('MCP server enablement config must be a JSON object.'));
+                return null;
+            }
             // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-            return JSON.parse(content);
+            return parsed;
         }
         catch (error) {
             if (error instanceof Error &&
@@ -265,7 +288,7 @@ export class McpServerEnablementManager {
                 return {};
             }
             coreEvents.emitFeedback('error', 'Failed to read MCP server enablement config.', error);
-            return {};
+            return null;
         }
     }
     /**

package/dist/src/config/mcp/mcpServerEnablement.js.map

@@ -1 +1 @@
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package/dist/src/config/mcp/mcpServerEnablement.test.js

@@ -4,6 +4,7 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 import fs from 'node:fs/promises';
+import path from 'node:path';
 import { afterEach, beforeEach, describe, expect, it, vi } from 'vitest';
 vi.mock('@google/gemini-cli-core', async (importOriginal) => {
     const actual = await importOriginal();
@@ -88,6 +89,32 @@ describe('McpServerEnablementManager', () => {
         expect(instance2.isSessionDisabled('test-server')).toBe(true);
         expect(instance1).toBe(instance2);
     });
+    it('should fail closed and preserve the config file when JSON is malformed', async () => {
+        const configPath = path.join('/virtual-home/.cell-cli', 'mcp-server-enablement.json');
+        const malformedContent = '{\n  "disabled-server": { "enabled": false },\n  "truncated": ';
+        inMemoryFs[configPath] = malformedContent;
+        // 1. isFileEnabled should fail closed (false) rather than defaulting to true
+        expect(await manager.isFileEnabled('disabled-server')).toBe(false);
+        expect(await manager.isFileEnabled('other-server')).toBe(false);
+        // 2. disable() should not overwrite the malformed file
+        await manager.disable('another-server');
+        expect(inMemoryFs[configPath]).toBe(malformedContent);
+        expect(fs.writeFile).not.toHaveBeenCalled();
+        // 3. enable() should not overwrite the malformed file
+        await manager.enable('disabled-server');
+        expect(inMemoryFs[configPath]).toBe(malformedContent);
+        expect(fs.writeFile).not.toHaveBeenCalled();
+        // 4. autoEnableServers() should not report persistent-disabled servers as enabled when file cannot be updated
+        expect(await manager.autoEnableServers(['disabled-server'])).toEqual([]);
+    });
+    it('should fail closed and preserve the config file when JSON root is not a plain object', async () => {
+        const configPath = path.join('/virtual-home/.cell-cli', 'mcp-server-enablement.json');
+        inMemoryFs[configPath] = '["not-an-object"]';
+        expect(await manager.isFileEnabled('server')).toBe(false);
+        await manager.disable('server');
+        expect(inMemoryFs[configPath]).toBe('["not-an-object"]');
+        expect(fs.writeFile).not.toHaveBeenCalled();
+    });
 });
 describe('canLoadServer', () => {
     it('blocks when admin has disabled MCP', async () => {

package/dist/src/config/mcp/mcpServerEnablement.test.js.map

@@ -1 +1 @@
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package/dist/src/config/settings.test.js

@@ -241,6 +241,28 @@ describe('Settings Loading and Merging', () => {
             expect(settings[scope].settings).toEqual(expectedScopeSettings);
             expect(settings.merged).toMatchObject(expectedWithMerged);
         });
+        it('should unconditionally override selectedType when CELL_CLI_AUTH_OVERRIDE is present and delete it from process.env', () => {
+            mockFsExistsSync.mockImplementation((pathLike) => path.normalize(pathLike.toString()) ===
+                path.normalize(USER_SETTINGS_PATH));
+            fs.readFileSync.mockImplementation((pathDesc) => {
+                if (path.normalize(pathDesc.toString()) ===
+                    path.normalize(USER_SETTINGS_PATH)) {
+                    return JSON.stringify({
+                        security: {
+                            auth: {
+                                selectedType: AuthType.USE_GEMINI,
+                            },
+                        },
+                    });
+                }
+                return '{}';
+            });
+            vi.stubEnv('CELL_CLI_AUTH_OVERRIDE', AuthType.LOGIN_WITH_GOOGLE);
+            const settings = loadSettings(MOCK_WORKSPACE_DIR);
+            expect(settings.user.settings.security?.auth?.selectedType).toBe(AuthType.LOGIN_WITH_GOOGLE);
+            expect(settings.merged.security.auth.selectedType).toBe(AuthType.LOGIN_WITH_GOOGLE);
+            expect(process.env['CELL_CLI_AUTH_OVERRIDE']).toBeUndefined();
+        });
         it('should merge system, user and workspace settings, with system taking precedence over workspace, and workspace over user', () => {
             mockFsExistsSync.mockImplementation((p) => {
                 const normP = path.normalize(p.toString());