@machina.ai/cell-cli-core 1.8.2-rc1 → 1.10.0-rc1

package/dist/src/tools/mcp-client.test.js

@@ -8,16 +8,32 @@ import * as ClientLib from '@modelcontextprotocol/sdk/client/index.js';
 import { SSEClientTransport } from '@modelcontextprotocol/sdk/client/sse.js';
 import * as SdkClientStdioLib from '@modelcontextprotocol/sdk/client/stdio.js';
 import { StreamableHTTPClientTransport } from '@modelcontextprotocol/sdk/client/streamableHttp.js';
-import { afterEach, describe, expect, it, vi } from 'vitest';
+import { afterEach, beforeEach, describe, expect, it, vi } from 'vitest';
 import { AuthProviderType } from '../config/config.js';
 import { GoogleCredentialProvider } from '../mcp/google-auth-provider.js';
-import { createTransport, hasNetworkTransport, isEnabled, McpClient, populateMcpServerCommand, } from './mcp-client.js';
+import { MCPOAuthProvider } from '../mcp/oauth-provider.js';
+import { MCPOAuthTokenStorage } from '../mcp/oauth-token-storage.js';
+import { OAuthUtils } from '../mcp/oauth-utils.js';
+import { WorkspaceContext } from '../utils/workspaceContext.js';
+import { connectToMcpServer, createTransport, hasNetworkTransport, isEnabled, McpClient, populateMcpServerCommand, } from './mcp-client.js';
+import * as fs from 'node:fs';
+import * as os from 'node:os';
+import * as path from 'node:path';
 vi.mock('@modelcontextprotocol/sdk/client/stdio.js');
 vi.mock('@modelcontextprotocol/sdk/client/index.js');
 vi.mock('@google/genai');
 vi.mock('../mcp/oauth-provider.js');
 vi.mock('../mcp/oauth-token-storage.js');
+vi.mock('../mcp/oauth-utils.js');
 describe('mcp-client', () => {
+    let workspaceContext;
+    let testWorkspace;
+    beforeEach(() => {
+        // create a tmp dir for this test
+        // Create a unique temporary directory for the workspace to avoid conflicts
+        testWorkspace = fs.mkdtempSync(path.join(os.tmpdir(), 'gemini-agent-test-'));
+        workspaceContext = new WorkspaceContext(testWorkspace);
+    });
     afterEach(() => {
         vi.restoreAllMocks();
     });
@@ -30,6 +46,7 @@ describe('mcp-client', () => {
                 getStatus: vi.fn(),
                 registerCapabilities: vi.fn(),
                 setRequestHandler: vi.fn(),
+                getServerCapabilities: vi.fn().mockReturnValue({ tools: {} }),
             };
             vi.mocked(ClientLib.Client).mockReturnValue(mockedClient);
             vi.spyOn(SdkClientStdioLib, 'StdioClientTransport').mockReturnValue({});
@@ -47,7 +64,7 @@ describe('mcp-client', () => {
             };
             const client = new McpClient('test-server', {
                 command: 'test-command',
-            }, mockedToolRegistry, {}, {}, false);
+            }, mockedToolRegistry, {}, workspaceContext, false);
             await client.connect();
             await client.discover({});
             expect(mockedMcpToTool).toHaveBeenCalledOnce();
@@ -63,6 +80,7 @@ describe('mcp-client', () => {
                 getStatus: vi.fn(),
                 registerCapabilities: vi.fn(),
                 setRequestHandler: vi.fn(),
+                getServerCapabilities: vi.fn().mockReturnValue({ tools: {} }),
                 tool: vi.fn(),
             };
             vi.mocked(ClientLib.Client).mockReturnValue(mockedClient);
@@ -96,7 +114,7 @@ describe('mcp-client', () => {
             };
             const client = new McpClient('test-server', {
                 command: 'test-command',
-            }, mockedToolRegistry, {}, {}, false);
+            }, mockedToolRegistry, {}, workspaceContext, false);
             await client.connect();
             await client.discover({});
             expect(mockedToolRegistry.registerTool).toHaveBeenCalledTimes(2);
@@ -124,12 +142,70 @@ describe('mcp-client', () => {
             });
             const client = new McpClient('test-server', {
                 command: 'test-command',
-            }, {}, {}, {}, false);
+            }, {}, {}, workspaceContext, false);
             await client.connect();
             await expect(client.discover({})).rejects.toThrow('No prompts or tools found on the server.');
             expect(consoleErrorSpy).toHaveBeenCalledWith(`Error discovering prompts from test-server: Test error`);
             consoleErrorSpy.mockRestore();
         });
+        it('should not discover tools if server does not support them', async () => {
+            const mockedClient = {
+                connect: vi.fn(),
+                discover: vi.fn(),
+                disconnect: vi.fn(),
+                getStatus: vi.fn(),
+                registerCapabilities: vi.fn(),
+                setRequestHandler: vi.fn(),
+                getServerCapabilities: vi.fn().mockReturnValue({ prompts: {} }),
+                request: vi.fn().mockResolvedValue({ prompts: [] }),
+            };
+            vi.mocked(ClientLib.Client).mockReturnValue(mockedClient);
+            vi.spyOn(SdkClientStdioLib, 'StdioClientTransport').mockReturnValue({});
+            const mockedMcpToTool = vi.mocked(GenAiLib.mcpToTool);
+            const mockedToolRegistry = {
+                registerTool: vi.fn(),
+            };
+            const client = new McpClient('test-server', {
+                command: 'test-command',
+            }, mockedToolRegistry, {}, workspaceContext, false);
+            await client.connect();
+            await expect(client.discover({})).rejects.toThrow('No prompts or tools found on the server.');
+            expect(mockedMcpToTool).not.toHaveBeenCalled();
+        });
+        it('should discover tools if server supports them', async () => {
+            const mockedClient = {
+                connect: vi.fn(),
+                discover: vi.fn(),
+                disconnect: vi.fn(),
+                getStatus: vi.fn(),
+                registerCapabilities: vi.fn(),
+                setRequestHandler: vi.fn(),
+                getServerCapabilities: vi.fn().mockReturnValue({ tools: {} }),
+                request: vi.fn().mockResolvedValue({ prompts: [] }),
+            };
+            vi.mocked(ClientLib.Client).mockReturnValue(mockedClient);
+            vi.spyOn(SdkClientStdioLib, 'StdioClientTransport').mockReturnValue({});
+            const mockedMcpToTool = vi.mocked(GenAiLib.mcpToTool).mockReturnValue({
+                tool: () => Promise.resolve({
+                    functionDeclarations: [
+                        {
+                            name: 'testTool',
+                            description: 'A test tool',
+                        },
+                    ],
+                }),
+            });
+            const mockedToolRegistry = {
+                registerTool: vi.fn(),
+            };
+            const client = new McpClient('test-server', {
+                command: 'test-command',
+            }, mockedToolRegistry, {}, workspaceContext, false);
+            await client.connect();
+            await client.discover({});
+            expect(mockedMcpToTool).toHaveBeenCalledOnce();
+            expect(mockedToolRegistry.registerTool).toHaveBeenCalledOnce();
+        });
     });
     describe('appendMcpServerCommand', () => {
         it('should do nothing if no MCP servers or command are configured', () => {
@@ -306,4 +382,91 @@ describe('mcp-client', () => {
         });
     });
 });
+describe('connectToMcpServer with OAuth', () => {
+    let mockedClient;
+    let workspaceContext;
+    let testWorkspace;
+    let mockAuthProvider;
+    let mockTokenStorage;
+    beforeEach(() => {
+        mockedClient = {
+            connect: vi.fn(),
+            close: vi.fn(),
+            registerCapabilities: vi.fn(),
+            setRequestHandler: vi.fn(),
+            onclose: vi.fn(),
+            notification: vi.fn(),
+        };
+        vi.mocked(ClientLib.Client).mockImplementation(() => mockedClient);
+        testWorkspace = fs.mkdtempSync(path.join(os.tmpdir(), 'gemini-agent-test-'));
+        workspaceContext = new WorkspaceContext(testWorkspace);
+        vi.spyOn(console, 'log').mockImplementation(() => { });
+        vi.spyOn(console, 'warn').mockImplementation(() => { });
+        vi.spyOn(console, 'error').mockImplementation(() => { });
+        mockTokenStorage = {
+            getCredentials: vi.fn().mockResolvedValue({ clientId: 'test-client' }),
+        };
+        vi.mocked(MCPOAuthTokenStorage).mockReturnValue(mockTokenStorage);
+        mockAuthProvider = {
+            authenticate: vi.fn().mockResolvedValue(undefined),
+            getValidToken: vi.fn().mockResolvedValue('test-access-token'),
+            tokenStorage: mockTokenStorage,
+        };
+        vi.mocked(MCPOAuthProvider).mockReturnValue(mockAuthProvider);
+    });
+    afterEach(() => {
+        vi.clearAllMocks();
+    });
+    it('should handle automatic OAuth flow on 401 with www-authenticate header', async () => {
+        const serverUrl = 'http://test-server.com/';
+        const authUrl = 'http://auth.example.com/auth';
+        const tokenUrl = 'http://auth.example.com/token';
+        const wwwAuthHeader = `Bearer realm="test", resource_metadata="http://test-server.com/.well-known/oauth-protected-resource"`;
+        vi.mocked(mockedClient.connect).mockRejectedValueOnce(new Error(`401 Unauthorized\nwww-authenticate: ${wwwAuthHeader}`));
+        vi.mocked(OAuthUtils.discoverOAuthConfig).mockResolvedValue({
+            authorizationUrl: authUrl,
+            tokenUrl,
+            scopes: ['test-scope'],
+        });
+        // We need this to be an any type because we dig into its private state.
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        let capturedTransport;
+        vi.mocked(mockedClient.connect).mockImplementationOnce(async (transport) => {
+            capturedTransport = transport;
+            return Promise.resolve();
+        });
+        const client = await connectToMcpServer('test-server', { httpUrl: serverUrl }, false, workspaceContext);
+        expect(client).toBe(mockedClient);
+        expect(mockedClient.connect).toHaveBeenCalledTimes(2);
+        expect(mockAuthProvider.authenticate).toHaveBeenCalledOnce();
+        const authHeader = capturedTransport._requestInit?.headers?.['Authorization'];
+        expect(authHeader).toBe('Bearer test-access-token');
+    });
+    it('should discover oauth config if not in www-authenticate header', async () => {
+        const serverUrl = 'http://test-server.com';
+        const authUrl = 'http://auth.example.com/auth';
+        const tokenUrl = 'http://auth.example.com/token';
+        vi.mocked(mockedClient.connect).mockRejectedValueOnce(new Error('401 Unauthorized'));
+        vi.mocked(OAuthUtils.discoverOAuthConfig).mockResolvedValue({
+            authorizationUrl: authUrl,
+            tokenUrl,
+            scopes: ['test-scope'],
+        });
+        vi.mocked(mockAuthProvider.getValidToken).mockResolvedValue('test-access-token-from-discovery');
+        // We need this to be an any type because we dig into its private state.
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        let capturedTransport;
+        vi.mocked(mockedClient.connect).mockImplementationOnce(async (transport) => {
+            capturedTransport = transport;
+            return Promise.resolve();
+        });
+        const client = await connectToMcpServer('test-server', { httpUrl: serverUrl }, false, workspaceContext);
+        expect(client).toBe(mockedClient);
+        expect(mockedClient.connect).toHaveBeenCalledTimes(2);
+        expect(mockAuthProvider.authenticate).toHaveBeenCalledOnce();
+        expect(OAuthUtils.discoverOAuthConfig).toHaveBeenCalledWith(serverUrl);
+        const authHeader = capturedTransport._requestInit?.headers?.['Authorization'];
+        expect(authHeader).toBe('Bearer test-access-token-from-discovery');
+    });
+});
 //# sourceMappingURL=mcp-client.test.js.map

package/dist/src/tools/mcp-client.test.js.map

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package/dist/src/tools/memoryTool.d.ts

@@ -6,7 +6,6 @@
 import type { ToolEditConfirmationDetails, ToolResult } from './tools.js';
 import { BaseDeclarativeTool, BaseToolInvocation } from './tools.js';
 import type { ModifiableDeclarativeTool, ModifyContext } from './modifiable-tool.js';
-export declare const CELL_CONFIG_DIR = ".cell-cli";
 export declare const DEFAULT_CONTEXT_FILENAME = "GEMINI.md";
 export declare const MEMORY_SECTION_HEADER = "## Gemini Added Memories";
 export declare function setGeminiMdFilename(newFilename: string | string[]): void;
@@ -17,6 +16,7 @@ interface SaveMemoryParams {
     modified_by_user?: boolean;
     modified_content?: string;
 }
+export declare function getGlobalMemoryFilePath(): string;
 declare class MemoryToolInvocation extends BaseToolInvocation<SaveMemoryParams, ToolResult> {
     private static readonly allowlist;
     getDescription(): string;

package/dist/src/tools/memoryTool.js

@@ -43,7 +43,6 @@ Do NOT use this tool:
 
 - \`fact\` (string, required): The specific fact or piece of information to remember. This should be a clear, self-contained statement. For example, if the user says "My favorite color is blue", the fact would be "My favorite color is blue".
 `;
-export const CELL_CONFIG_DIR = '.cell-cli';
 export const DEFAULT_CONTEXT_FILENAME = 'GEMINI.md';
 export const MEMORY_SECTION_HEADER = '## Gemini Added Memories';
 // This variable will hold the currently configured filename for GEMINI.md context files.
@@ -71,7 +70,7 @@ export function getAllGeminiMdFilenames() {
     }
     return [currentGeminiMdFilename];
 }
-function getGlobalMemoryFilePath() {
+export function getGlobalMemoryFilePath() {
     return path.join(Storage.getGlobalGeminiDir(), getCurrentGeminiMdFilename());
 }
 /**

package/dist/src/tools/memoryTool.js.map

@@ -1 +1 @@
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+{"version":3,"file":"memoryTool.js","sourceRoot":"","sources":["../../../src/tools/memoryTool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EACL,mBAAmB,EACnB,kBAAkB,EAClB,IAAI,EACJ,uBAAuB,GACxB,MAAM,YAAY,CAAC;AAEpB,OAAO,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACvC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,OAAO,EAAE,MAAM,sBAAsB,CAAC;AAC/C,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAC7B,OAAO,EAAE,oBAAoB,EAAE,MAAM,kBAAkB,CAAC;AACxD,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AAKjD,OAAO,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAC;AAEhD,MAAM,oBAAoB,GAAwB;IAChD,IAAI,EAAE,aAAa;IACnB,WAAW,EACT,4OAA4O;IAC9O,oBAAoB,EAAE;QACpB,IAAI,EAAE,QAAQ;QACd,UAAU,EAAE;YACV,IAAI,EAAE;gBACJ,IAAI,EAAE,QAAQ;gBACd,WAAW,EACT,qGAAqG;aACxG;SACF;QACD,QAAQ,EAAE,CAAC,MAAM,CAAC;KACnB;CACF,CAAC;AAEF,MAAM,qBAAqB,GAAG;;;;;;;;;;;;;;;;;CAiB7B,CAAC;AAEF,MAAM,CAAC,MAAM,wBAAwB,GAAG,WAAW,CAAC;AACpD,MAAM,CAAC,MAAM,qBAAqB,GAAG,0BAA0B,CAAC;AAEhE,yFAAyF;AACzF,wFAAwF;AACxF,IAAI,uBAAuB,GAAsB,wBAAwB,CAAC;AAE1E,MAAM,UAAU,mBAAmB,CAAC,WAA8B;IAChE,IAAI,KAAK,CAAC,OAAO,CAAC,WAAW,CAAC,EAAE,CAAC;QAC/B,IAAI,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC3B,uBAAuB,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC;QACnE,CAAC;IACH,CAAC;SAAM,IAAI,WAAW,IAAI,WAAW,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;QACpD,uBAAuB,GAAG,WAAW,CAAC,IAAI,EAAE,CAAC;IAC/C,CAAC;AACH,CAAC;AAED,MAAM,UAAU,0BAA0B;IACxC,IAAI,KAAK,CAAC,OAAO,CAAC,uBAAuB,CAAC,EAAE,CAAC;QAC3C,OAAO,uBAAuB,CAAC,CAAC,CAAC,CAAC;IACpC,CAAC;IACD,OAAO,uBAAuB,CAAC;AACjC,CAAC;AAED,MAAM,UAAU,uBAAuB;IACrC,IAAI,KAAK,CAAC,OAAO,CAAC,uBAAuB,CAAC,EAAE,CAAC;QAC3C,OAAO,uBAAuB,CAAC;IACjC,CAAC;IACD,OAAO,CAAC,uBAAuB,CAAC,CAAC;AACnC,CAAC;AAQD,MAAM,UAAU,uBAAuB;IACrC,OAAO,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,kBAAkB,EAAE,EAAE,0BAA0B,EAAE,CAAC,CAAC;AAC/E,CAAC;AAED;;GAEG;AACH,SAAS,uBAAuB,CAAC,cAAsB;IACrD,IAAI,cAAc,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IAC3C,IAAI,cAAc,CAAC,QAAQ,CAAC,MAAM,CAAC,IAAI,cAAc,CAAC,QAAQ,CAAC,UAAU,CAAC;QACxE,OAAO,EAAE,CAAC;IACZ,IAAI,cAAc,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,cAAc,CAAC,QAAQ,CAAC,MAAM,CAAC;QAClE,OAAO,IAAI,CAAC;IACd,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;GAEG;AACH,KAAK,UAAU,qBAAqB;IAClC,IAAI,CAAC;QACH,OAAO,MAAM,EAAE,CAAC,QAAQ,CAAC,uBAAuB,EAAE,EAAE,OAAO,CAAC,CAAC;IAC/D,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,MAAM,KAAK,GAAG,GAAgC,CAAC;QAC/C,IAAI,CAAC,CAAC,KAAK,YAAY,KAAK,CAAC,IAAI,KAAK,CAAC,IAAI,KAAK,QAAQ;YAAE,MAAM,GAAG,CAAC;QACpE,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC;AAED;;GAEG;AACH,SAAS,iBAAiB,CAAC,cAAsB,EAAE,IAAY;IAC7D,IAAI,aAAa,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC;IAChC,aAAa,GAAG,aAAa,CAAC,OAAO,CAAC,WAAW,EAAE,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;IAC9D,MAAM,aAAa,GAAG,KAAK,aAAa,EAAE,CAAC;IAE3C,MAAM,WAAW,GAAG,cAAc,CAAC,OAAO,CAAC,qBAAqB,CAAC,CAAC;IAElE,IAAI,WAAW,KAAK,CAAC,CAAC,EAAE,CAAC;QACvB,qDAAqD;QACrD,MAAM,SAAS,GAAG,uBAAuB,CAAC,cAAc,CAAC,CAAC;QAC1D,OAAO,CACL,cAAc;YACd,GAAG,SAAS,GAAG,qBAAqB,KAAK,aAAa,IAAI,CAC3D,CAAC;IACJ,CAAC;SAAM,CAAC;QACN,0DAA0D;QAC1D,MAAM,qBAAqB,GAAG,WAAW,GAAG,qBAAqB,CAAC,MAAM,CAAC;QACzE,IAAI,iBAAiB,GAAG,cAAc,CAAC,OAAO,CAC5C,OAAO,EACP,qBAAqB,CACtB,CAAC;QACF,IAAI,iBAAiB,KAAK,CAAC,CAAC,EAAE,CAAC;YAC7B,iBAAiB,GAAG,cAAc,CAAC,MAAM,CAAC,CAAC,cAAc;QAC3D,CAAC;QAED,MAAM,mBAAmB,GAAG,cAAc;aACvC,SAAS,CAAC,CAAC,EAAE,qBAAqB,CAAC;aACnC,OAAO,EAAE,CAAC;QACb,IAAI,cAAc,GAAG,cAAc;aAChC,SAAS,CAAC,qBAAqB,EAAE,iBAAiB,CAAC;aACnD,OAAO,EAAE,CAAC;QACb,MAAM,kBAAkB,GAAG,cAAc,CAAC,SAAS,CAAC,iBAAiB,CAAC,CAAC;QAEvE,cAAc,IAAI,KAAK,aAAa,EAAE,CAAC;QACvC,OAAO,CACL,GAAG,mBAAmB,KAAK,cAAc,CAAC,SAAS,EAAE,KAAK,kBAAkB,EAAE,CAAC,OAAO,EAAE;YACxF,IAAI,CACL,CAAC;IACJ,CAAC;AACH,CAAC;AAED,MAAM,oBAAqB,SAAQ,kBAGlC;IACS,MAAM,CAAU,SAAS,GAAgB,IAAI,GAAG,EAAE,CAAC;IAE3D,cAAc;QACZ,MAAM,cAAc,GAAG,uBAAuB,EAAE,CAAC;QACjD,OAAO,MAAM,YAAY,CAAC,cAAc,CAAC,EAAE,CAAC;IAC9C,CAAC;IAEQ,KAAK,CAAC,oBAAoB,CACjC,YAAyB;QAEzB,MAAM,cAAc,GAAG,uBAAuB,EAAE,CAAC;QACjD,MAAM,YAAY,GAAG,cAAc,CAAC;QAEpC,IAAI,oBAAoB,CAAC,SAAS,CAAC,GAAG,CAAC,YAAY,CAAC,EAAE,CAAC;YACrD,OAAO,KAAK,CAAC;QACf,CAAC;QAED,MAAM,cAAc,GAAG,MAAM,qBAAqB,EAAE,CAAC;QACrD,MAAM,UAAU,GAAG,iBAAiB,CAAC,cAAc,EAAE,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;QAEvE,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC;QAC/C,MAAM,QAAQ,GAAG,IAAI,CAAC,WAAW,CAC/B,QAAQ,EACR,cAAc,EACd,UAAU,EACV,SAAS,EACT,UAAU,EACV,oBAAoB,CACrB,CAAC;QAEF,MAAM,mBAAmB,GAAgC;YACvD,IAAI,EAAE,MAAM;YACZ,KAAK,EAAE,wBAAwB,YAAY,CAAC,cAAc,CAAC,EAAE;YAC7D,QAAQ,EAAE,cAAc;YACxB,QAAQ,EAAE,cAAc;YACxB,QAAQ;YACR,eAAe,EAAE,cAAc;YAC/B,UAAU;YACV,SAAS,EAAE,KAAK,EAAE,OAAgC,EAAE,EAAE;gBACpD,IAAI,OAAO,KAAK,uBAAuB,CAAC,aAAa,EAAE,CAAC;oBACtD,oBAAoB,CAAC,SAAS,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;gBACnD,CAAC;YACH,CAAC;SACF,CAAC;QACF,OAAO,mBAAmB,CAAC;IAC7B,CAAC;IAED,KAAK,CAAC,OAAO,CAAC,OAAoB;QAChC,MAAM,EAAE,IAAI,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAC,MAAM,CAAC;QAEjE,IAAI,CAAC;YACH,IAAI,gBAAgB,IAAI,gBAAgB,KAAK,SAAS,EAAE,CAAC;gBACvD,kEAAkE;gBAClE,MAAM,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,uBAAuB,EAAE,CAAC,EAAE;oBACtD,SAAS,EAAE,IAAI;iBAChB,CAAC,CAAC;gBACH,MAAM,EAAE,CAAC,SAAS,CAChB,uBAAuB,EAAE,EACzB,gBAAgB,EAChB,OAAO,CACR,CAAC;gBACF,MAAM,cAAc,GAAG,6DAA6D,CAAC;gBACrF,OAAO;oBACL,UAAU,EAAE,IAAI,CAAC,SAAS,CAAC;wBACzB,OAAO,EAAE,IAAI;wBACb,OAAO,EAA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package/dist/src/tools/memoryTool.test.js

@@ -10,6 +10,7 @@ import * as path from 'node:path';
 import * as os from 'node:os';
 import { ToolConfirmationOutcome } from './tools.js';
 import { ToolErrorType } from './tool-error.js';
+import { CELL_DIR } from '../utils/paths.js';
 // Mock dependencies
 vi.mock(import('node:fs/promises'), async (importOriginal) => {
     const actual = await importOriginal();
@@ -67,7 +68,7 @@ describe('MemoryTool', () => {
     describe('performAddMemoryEntry (static method)', () => {
         let testFilePath;
         beforeEach(() => {
-            testFilePath = path.join(os.homedir(), '.cell-cli', DEFAULT_CONTEXT_FILENAME);
+            testFilePath = path.join(os.homedir(), CELL_DIR, DEFAULT_CONTEXT_FILENAME);
         });
         it('should create section and save a fact if file does not exist', async () => {
             mockFsAdapter.readFile.mockRejectedValue({ code: 'ENOENT' }); // Simulate file not found
@@ -170,7 +171,7 @@ describe('MemoryTool', () => {
             const invocation = memoryTool.build(params);
             const result = await invocation.execute(mockAbortSignal);
             // Use getCurrentGeminiMdFilename for the default expectation before any setGeminiMdFilename calls in a test
-            const expectedFilePath = path.join(os.homedir(), '.cell-cli', getCurrentGeminiMdFilename());
+            const expectedFilePath = path.join(os.homedir(), CELL_DIR, getCurrentGeminiMdFilename());
             // For this test, we expect the actual fs methods to be passed
             const expectedFsArgument = {
                 readFile: fs.readFile,
@@ -219,9 +220,9 @@ describe('MemoryTool', () => {
             expect(result).toBeDefined();
             expect(result).not.toBe(false);
             if (result && result.type === 'edit') {
-                const expectedPath = path.join('~', '.cell-cli', 'GEMINI.md');
+                const expectedPath = path.join('~', CELL_DIR, 'GEMINI.md');
                 expect(result.title).toBe(`Confirm Memory Save: ${expectedPath}`);
-                expect(result.fileName).toContain(path.join('mock', 'home', '.cell-cli'));
+                expect(result.fileName).toContain(path.join('mock', 'home', CELL_DIR));
                 expect(result.fileName).toContain('GEMINI.md');
                 expect(result.fileDiff).toContain('Index: GEMINI.md');
                 expect(result.fileDiff).toContain('+## Gemini Added Memories');
@@ -233,7 +234,7 @@ describe('MemoryTool', () => {
         });
         it('should return false when memory file is already allowlisted', async () => {
             const params = { fact: 'Test fact' };
-            const memoryFilePath = path.join(os.homedir(), '.cell-cli', getCurrentGeminiMdFilename());
+            const memoryFilePath = path.join(os.homedir(), CELL_DIR, getCurrentGeminiMdFilename());
             const invocation = memoryTool.build(params);
             // Add the memory file to the allowlist
             // eslint-disable-next-line @typescript-eslint/no-explicit-any
@@ -243,7 +244,7 @@ describe('MemoryTool', () => {
         });
         it('should add memory file to allowlist when ProceedAlways is confirmed', async () => {
             const params = { fact: 'Test fact' };
-            const memoryFilePath = path.join(os.homedir(), '.cell-cli', getCurrentGeminiMdFilename());
+            const memoryFilePath = path.join(os.homedir(), CELL_DIR, getCurrentGeminiMdFilename());
             const invocation = memoryTool.build(params);
             const result = await invocation.shouldConfirmExecute(mockAbortSignal);
             expect(result).toBeDefined();
@@ -259,7 +260,7 @@ describe('MemoryTool', () => {
         });
         it('should not add memory file to allowlist when other outcomes are confirmed', async () => {
             const params = { fact: 'Test fact' };
-            const memoryFilePath = path.join(os.homedir(), '.cell-cli', getCurrentGeminiMdFilename());
+            const memoryFilePath = path.join(os.homedir(), CELL_DIR, getCurrentGeminiMdFilename());
             const invocation = memoryTool.build(params);
             const result = await invocation.shouldConfirmExecute(mockAbortSignal);
             expect(result).toBeDefined();
@@ -284,7 +285,7 @@ describe('MemoryTool', () => {
             expect(result).toBeDefined();
             expect(result).not.toBe(false);
             if (result && result.type === 'edit') {
-                const expectedPath = path.join('~', '.cell-cli', 'GEMINI.md');
+                const expectedPath = path.join('~', CELL_DIR, 'GEMINI.md');
                 expect(result.title).toBe(`Confirm Memory Save: ${expectedPath}`);
                 expect(result.fileDiff).toContain('Index: GEMINI.md');
                 expect(result.fileDiff).toContain('+- New fact');

package/dist/src/tools/memoryTool.test.js.map

@@ -1 +1 @@
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package/dist/src/tools/shell.js

@@ -9,12 +9,49 @@ import os, { EOL } from 'node:os';
 import crypto from 'node:crypto';
 import { ToolErrorType } from './tool-error.js';
 import { BaseDeclarativeTool, BaseToolInvocation, ToolConfirmationOutcome, Kind, } from './tools.js';
+import { ApprovalMode } from '../config/config.js';
 import { getErrorMessage } from '../utils/errors.js';
 import { summarizeToolOutput } from '../utils/summarizer.js';
 import { ShellExecutionService } from '../services/shellExecutionService.js';
 import { formatMemoryUsage } from '../utils/formatters.js';
-import { getCommandRoots, isCommandAllowed, stripShellWrapper, } from '../utils/shell-utils.js';
+import { getCommandRoots, isCommandAllowed, SHELL_TOOL_NAMES, stripShellWrapper, } from '../utils/shell-utils.js';
 export const OUTPUT_UPDATE_INTERVAL_MS = 1000;
+/**
+ * Parses the `--allowed-tools` flag to determine which sub-commands of the
+ * ShellTool are allowed. The flag can be provided multiple times.
+ *
+ * @param allowedTools The list of allowed tools from the config.
+ * @returns A Set of allowed sub-commands, or null if all commands are allowed.
+ *  - `null`: All sub-commands are allowed (e.g., --allowed-tools="ShellTool").
+ *  - `Set<string>`: A set of specifically allowed sub-commands (e.g., --allowed-tools="ShellTool(wc)" --allowed-tools="ShellTool(ls)").
+ *  - `Set<>` (empty): No sub-commands are allowed (e.g., --allowed-tools="ShellTool()").
+ */
+function parseAllowedSubcommands(allowedTools) {
+    const shellToolEntries = allowedTools.filter((tool) => SHELL_TOOL_NAMES.some((name) => tool.startsWith(name)));
+    if (shellToolEntries.length === 0) {
+        return new Set(); // ShellTool not mentioned, so no subcommands are allowed.
+    }
+    // If any entry is just "run_shell_command" or "ShellTool", all subcommands are allowed.
+    if (shellToolEntries.some((entry) => SHELL_TOOL_NAMES.includes(entry))) {
+        return null;
+    }
+    const allSubcommands = new Set();
+    const toolNamePattern = SHELL_TOOL_NAMES.join('|');
+    const regex = new RegExp(`^(${toolNamePattern})\\((.*)\\)$`);
+    for (const entry of shellToolEntries) {
+        const match = entry.match(regex);
+        if (match) {
+            const subcommands = match[2];
+            if (subcommands) {
+                subcommands
+                    .split(',')
+                    .map((s) => s.trim())
+                    .forEach((s) => s && allSubcommands.add(s));
+            }
+        }
+    }
+    return allSubcommands;
+}
 export class ShellToolInvocation extends BaseToolInvocation {
     config;
     allowlist;
@@ -39,6 +76,22 @@ export class ShellToolInvocation extends BaseToolInvocation {
     async shouldConfirmExecute(_abortSignal) {
         const command = stripShellWrapper(this.params.command);
         const rootCommands = [...new Set(getCommandRoots(command))];
+        // In non-interactive mode, we need to prevent the tool from hanging while
+        // waiting for user input. If a tool is not fully allowed (e.g. via
+        // --allowed-tools="ShellTool(wc)"), we should throw an error instead of
+        // prompting for confirmation. This check is skipped in YOLO mode.
+        if (!this.config.isInteractive() &&
+            this.config.getApprovalMode() !== ApprovalMode.YOLO) {
+            const allowed = this.config.getAllowedTools() || [];
+            const allowedSubcommands = parseAllowedSubcommands(allowed);
+            if (allowedSubcommands !== null) {
+                // Not all commands are allowed, so we need to check.
+                const allCommandsAllowed = rootCommands.every((cmd) => allowedSubcommands.has(cmd));
+                if (!allCommandsAllowed) {
+                    throw new Error(`Command "${command}" is not in the list of allowed tools for non-interactive mode.`);
+                }
+            }
+        }
         const commandsToConfirm = rootCommands.filter((command) => !this.allowlist.has(command));
         if (commandsToConfirm.length === 0) {
             return false; // already approved and allowlisted
@@ -117,7 +170,7 @@ export class ShellToolInvocation extends BaseToolInvocation {
                     updateOutput(cumulativeOutput);
                     lastUpdateTime = Date.now();
                 }
-            }, signal, this.config.getShouldUseNodePtyShell(), shellExecutionConfig ?? {});
+            }, signal, this.config.getEnableInteractiveShell(), shellExecutionConfig ?? {});
             if (pid && setPidCallback) {
                 setPidCallback(pid);
             }