@machina.ai/cell-cli-core 1.22.5-rc1 → 1.25.0-rc1

package/dist/src/config/config.js

@@ -15,8 +15,8 @@ import { ReadFileTool } from '../tools/read-file.js';
 import { GrepTool } from '../tools/grep.js';
 import { canUseRipgrep, RipGrepTool } from '../tools/ripGrep.js';
 import { GlobTool } from '../tools/glob.js';
+import { ActivateSkillTool } from '../tools/activate-skill.js';
 import { EditTool } from '../tools/edit.js';
-import { SmartEditTool } from '../tools/smart-edit.js';
 import { ShellTool } from '../tools/shell.js';
 import { WriteFileTool } from '../tools/write-file.js';
 import { WebFetchTool } from '../tools/web-fetch.js';
@@ -27,15 +27,15 @@ import { BaseLlmClient } from '../core/baseLlmClient.js';
 import { FileDiscoveryService } from '../services/fileDiscoveryService.js';
 import { GitService } from '../services/gitService.js';
 import { initializeTelemetry, DEFAULT_TELEMETRY_TARGET, DEFAULT_OTLP_ENDPOINT, uiTelemetryService, } from '../telemetry/index.js';
-import { coreEvents } from '../utils/events.js';
+import { coreEvents, CoreEvent } from '../utils/events.js';
 import { tokenLimit } from '../core/tokenLimits.js';
 import { DEFAULT_GEMINI_EMBEDDING_MODEL, DEFAULT_GEMINI_FLASH_MODEL, DEFAULT_GEMINI_MODEL_AUTO, DEFAULT_THINKING_MODE, isPreviewModel, PREVIEW_GEMINI_MODEL, PREVIEW_GEMINI_MODEL_AUTO, } from './models.js';
 import { shouldAttemptBrowserLaunch } from '../utils/browser.js';
 import { ideContextStore } from '../ide/ideContext.js';
 import { WriteTodosTool } from '../tools/write-todos.js';
 import { StandardFileSystemService } from '../services/fileSystemService.js';
-import { logRipgrepFallback } from '../telemetry/loggers.js';
-import { RipgrepFallbackEvent } from '../telemetry/types.js';
+import { logRipgrepFallback, logFlashFallback } from '../telemetry/loggers.js';
+import { RipgrepFallbackEvent, FlashFallbackEvent, } from '../telemetry/types.js';
 import { ModelAvailabilityService } from '../availability/modelAvailabilityService.js';
 import { ModelRouterService } from '../routing/modelRouterService.js';
 import { OutputFormat } from '../output/types.js';
@@ -47,6 +47,7 @@ import { Storage } from './storage.js';
 import { FileExclusions } from '../utils/ignorePatterns.js';
 import { MessageBus } from '../confirmation-bus/message-bus.js';
 import { PolicyEngine } from '../policy/policy-engine.js';
+import { ApprovalMode } from '../policy/types.js';
 import { HookSystem } from '../hooks/index.js';
 import { getCodeAssistServer } from '../code_assist/codeAssist.js';
 import { AgentRegistry } from '../agents/registry.js';
@@ -56,9 +57,8 @@ import { DELEGATE_TO_AGENT_TOOL_NAME } from '../tools/tool-names.js';
 import { getExperiments } from '../code_assist/experiments/experiments.js';
 import { ExperimentFlags } from '../code_assist/experiments/flagNames.js';
 import { debugLogger } from '../utils/debugLogger.js';
+import { SkillManager } from '../skills/skillManager.js';
 import { startupProfiler } from '../telemetry/startupProfiler.js';
-import { ApprovalMode } from '../policy/types.js';
-export { ApprovalMode };
 import { DEFAULT_FILE_FILTERING_OPTIONS, DEFAULT_MEMORY_FILE_FILTERING_OPTIONS, } from './constants.js';
 import { SimpleExtensionLoader, } from '../utils/extensionLoader.js';
 import { McpClientManager } from '../tools/mcp-client-manager.js';
@@ -145,9 +145,13 @@ export class Config {
     mcpClientManager;
     allowedMcpServers;
     blockedMcpServers;
+    allowedEnvironmentVariables;
+    blockedEnvironmentVariables;
+    enableEnvironmentVariableRedaction;
     promptRegistry;
     resourceRegistry;
     agentRegistry;
+    skillManager;
     sessionId;
     fileSystemService;
     contentGeneratorConfig;
@@ -165,6 +169,8 @@ export class Config {
     toolDiscoveryCommand;
     toolCallCommand;
     mcpServerCommand;
+    mcpEnabled;
+    extensionsEnabled;
     mcpServers;
     userMemory;
     geminiMdFileCount;
@@ -194,7 +200,6 @@ export class Config {
     noBrowser;
     folderTrust;
     ideMode;
-    inFallbackMode = false;
     _activeModel;
     maxSessionTurns;
     listSessions;
@@ -227,13 +232,12 @@ export class Config {
     storage;
     fileExclusions;
     eventEmitter;
-    useSmartEdit;
     useWriteTodos;
     messageBus;
     policyEngine;
     outputSettings;
-    enableMessageBusIntegration;
     codebaseInvestigatorSettings;
+    cliHelpAgentSettings;
     continueOnFailedApiCall;
     retryFetchErrors;
     enableShellOutputEfficiency;
@@ -243,17 +247,26 @@ export class Config {
     disableYoloMode;
     pendingIncludeDirectories;
     enableHooks;
+    enableHooksUI;
     hooks;
+    projectHooks;
     disabledHooks;
     experiments;
     experimentsPromise;
     hookSystem;
-    previewModelFallbackMode = false;
-    previewModelBypassMode = false;
-    enableModelAvailabilityService;
+    onModelChange;
+    onReload;
     enableAgents;
+    agents;
+    skillsSupport;
+    disabledSkills;
+    adminSkillsEnabled;
     experimentalJitContext;
+    disableLLMCorrection;
     contextManager;
+    terminalBackground = undefined;
+    remoteAdminSettings;
+    latestApiRequest;
     constructor(params) {
         this.sessionId = params.sessionId;
         this.embeddingModel =
@@ -273,8 +286,14 @@ export class Config {
         this.toolCallCommand = params.toolCallCommand;
         this.mcpServerCommand = params.mcpServerCommand;
         this.mcpServers = params.mcpServers;
+        this.mcpEnabled = params.mcpEnabled ?? true;
+        this.extensionsEnabled = params.extensionsEnabled ?? true;
         this.allowedMcpServers = params.allowedMcpServers ?? [];
         this.blockedMcpServers = params.blockedMcpServers ?? [];
+        this.allowedEnvironmentVariables = params.allowedEnvironmentVariables ?? [];
+        this.blockedEnvironmentVariables = params.blockedEnvironmentVariables ?? [];
+        this.enableEnvironmentVariableRedaction =
+            params.enableEnvironmentVariableRedaction ?? false;
         this.userMemory = params.userMemory ?? '';
         this.geminiMdFileCount = params.geminiMdFileCount ?? 0;
         this.geminiMdFilePaths = params.geminiMdFilePaths ?? [];
@@ -310,11 +329,15 @@ export class Config {
         this.bugCommand = params.bugCommand;
         this.model = params.model;
         this._activeModel = params.model;
-        this.enableModelAvailabilityService = true;
         this.enableAgents = params.enableAgents ?? false;
-        this.experimentalJitContext = params.experimentalJitContext ?? false;
+        this.agents = params.agents ?? {};
+        this.disableLLMCorrection = params.disableLLMCorrection ?? false;
+        this.skillsSupport = params.skillsSupport ?? false;
+        this.disabledSkills = params.disabledSkills ?? [];
+        this.adminSkillsEnabled = params.adminSkillsEnabled ?? true;
         this.modelAvailabilityService = new ModelAvailabilityService();
         this.previewFeatures = params.previewFeatures ?? undefined;
+        this.experimentalJitContext = params.experimentalJitContext ?? false;
         this.maxSessionTurns = params.maxSessionTurns ?? -1;
         this.experimentalZedIntegration =
             params.experimentalZedIntegration ?? false;
@@ -344,6 +367,7 @@ export class Config {
             terminalHeight: params.shellExecutionConfig?.terminalHeight ?? 24,
             showColor: params.shellExecutionConfig?.showColor ?? false,
             pager: params.shellExecutionConfig?.pager ?? 'cat',
+            sanitizationConfig: this.sanitizationConfig,
         };
         this.truncateToolOutputThreshold =
             params.truncateToolOutputThreshold ??
@@ -351,24 +375,16 @@ export class Config {
         this.truncateToolOutputLines =
             params.truncateToolOutputLines ?? DEFAULT_TRUNCATE_TOOL_OUTPUT_LINES;
         this.enableToolOutputTruncation = params.enableToolOutputTruncation ?? true;
-        this.useSmartEdit = params.useSmartEdit ?? true;
         // // TODO(joshualitt): Re-evaluate the todo tool for 3 family.
         this.useWriteTodos = isPreviewModel(this.model)
             ? false
             : (params.useWriteTodos ?? true);
+        this.enableHooksUI = params.enableHooksUI ?? true;
         this.enableHooks = params.enableHooks ?? false;
         this.disabledHooks =
             (params.hooks && 'disabled' in params.hooks
                 ? params.hooks.disabled
                 : undefined) ?? [];
-        // Enable MessageBus integration if:
-        // 1. Explicitly enabled via setting, OR
-        // 2. Hooks are enabled and hooks are configured
-        const hasHooks = params.hooks && Object.keys(params.hooks).length > 0;
-        const hooksNeedMessageBus = this.enableHooks && hasHooks;
-        this.enableMessageBusIntegration =
-            params.enableMessageBusIntegration ??
-                (hooksNeedMessageBus ? true : false);
         this.codebaseInvestigatorSettings = {
             enabled: params.codebaseInvestigatorSettings?.enabled ?? true,
             maxNumTurns: params.codebaseInvestigatorSettings?.maxNumTurns ?? 10,
@@ -377,6 +393,9 @@ export class Config {
                 DEFAULT_THINKING_MODE,
             model: params.codebaseInvestigatorSettings?.model,
         };
+        this.cliHelpAgentSettings = {
+            enabled: params.cliHelpAgentSettings?.enabled ?? true,
+        };
         this.continueOnFailedApiCall = params.continueOnFailedApiCall ?? true;
         this.enableShellOutputEfficiency =
             params.enableShellOutputEfficiency ?? true;
@@ -395,13 +414,17 @@ export class Config {
             approvalMode: params.approvalMode ?? params.policyEngineConfig?.approvalMode,
         });
         this.messageBus = new MessageBus(this.policyEngine, this.debugMode);
+        this.skillManager = new SkillManager();
         this.outputSettings = {
             format: params.output?.format ?? OutputFormat.TEXT,
         };
         this.retryFetchErrors = params.retryFetchErrors ?? false;
         this.disableYoloMode = params.disableYoloMode ?? false;
         this.hooks = params.hooks;
+        this.projectHooks = params.projectHooks;
         this.experiments = params.experiments;
+        this.onModelChange = params.onModelChange;
+        this.onReload = params.onReload;
         if (params.contextFileName) {
             setGeminiMdFilename(params.contextFileName);
         }
@@ -462,6 +485,7 @@ export class Config {
         this.resourceRegistry = new ResourceRegistry();
         this.agentRegistry = new AgentRegistry(this);
         await this.agentRegistry.initialize();
+        coreEvents.on(CoreEvent.AgentsRefreshed, this.onAgentsRefreshed);
         this.toolRegistry = await this.createToolRegistry();
         discoverToolsHandle?.end();
         this.mcpClientManager = new McpClientManager(this.toolRegistry, this, this.eventEmitter);
@@ -471,13 +495,26 @@ export class Config {
             await this.getExtensionLoader().start(this),
         ]);
         initMcpHandle?.end();
+        if (this.skillsSupport) {
+            this.getSkillManager().setAdminSettings(this.adminSkillsEnabled);
+            if (this.adminSkillsEnabled) {
+                await this.getSkillManager().discoverSkills(this.storage, this.getExtensions());
+                this.getSkillManager().setDisabledSkills(this.disabledSkills);
+                // Re-register ActivateSkillTool to update its schema with the discovered enabled skill enums
+                if (this.getSkillManager().getSkills().length > 0) {
+                    this.getToolRegistry().unregisterTool(ActivateSkillTool.Name);
+                    this.getToolRegistry().registerTool(new ActivateSkillTool(this, this.messageBus));
+                }
+            }
+        }
         // Initialize hook system if enabled
-        if (this.enableHooks) {
+        if (this.getEnableHooks()) {
             this.hookSystem = new HookSystem(this);
             await this.hookSystem.initialize();
         }
         if (this.experimentalJitContext) {
             this.contextManager = new ContextManager(this);
+            await this.contextManager.refresh();
         }
         await this.geminiClient.initialize();
     }
@@ -507,37 +544,31 @@ export class Config {
         // Initialize BaseLlmClient now that the ContentGenerator is available
         this.baseLlmClient = new BaseLlmClient(this.contentGenerator, this);
         const codeAssistServer = getCodeAssistServer(this);
-        if (codeAssistServer) {
-            if (codeAssistServer.projectId) {
-                await this.refreshUserQuota();
-            }
-            this.experimentsPromise = getExperiments(codeAssistServer)
-                .then((experiments) => {
-                this.setExperiments(experiments);
-                // If preview features have not been set and the user authenticated through Google, we enable preview based on remote config only if it's true
-                if (this.getPreviewFeatures() === undefined) {
-                    const remotePreviewFeatures = experiments.flags[ExperimentFlags.ENABLE_PREVIEW]?.boolValue;
-                    if (remotePreviewFeatures === true) {
-                        this.setPreviewFeatures(remotePreviewFeatures);
-                    }
-                }
-            })
-                .catch((e) => {
-                debugLogger.error('Failed to fetch experiments', e);
-            });
-        }
-        else {
-            this.experiments = undefined;
-            this.experimentsPromise = undefined;
+        if (codeAssistServer?.projectId) {
+            await this.refreshUserQuota();
         }
+        this.experimentsPromise = getExperiments(codeAssistServer)
+            .then((experiments) => {
+            this.setExperiments(experiments);
+            // If preview features have not been set and the user authenticated through Google, we enable preview based on remote config only if it's true
+            if (this.getPreviewFeatures() === undefined) {
+                const remotePreviewFeatures = experiments.flags[ExperimentFlags.ENABLE_PREVIEW]?.boolValue;
+                if (remotePreviewFeatures === true) {
+                    this.setPreviewFeatures(remotePreviewFeatures);
+                }
+            }
+        })
+            .catch((e) => {
+            debugLogger.error('Failed to fetch experiments', e);
+        });
         const authType = this.contentGeneratorConfig.authType;
         if (authType === AuthType.USE_GEMINI ||
             authType === AuthType.USE_VERTEX_AI) {
             this.setHasAccessToPreviewModel(true);
         }
-        // Reset the session flag since we're explicitly changing auth and using default model
-        this.inFallbackMode = false;
-        // Update model if user no longer has access to the preview model
+        // PATCH: If preview features are enabled, we assume access to the preview model.
+        // TODO(joshualitt): Revisit this logic to ensure that the user has access to
+        // the preview model through a proper quota check.
         if (!this.getPreviewFeatures() &&
             !this.hasAccessToPreviewModel &&
             isPreviewModel(this.model)) {
@@ -549,10 +580,7 @@ export class Config {
             return this.experiments;
         }
         const codeAssistServer = getCodeAssistServer(this);
-        if (codeAssistServer) {
-            return getExperiments(codeAssistServer);
-        }
-        return undefined;
+        return getExperiments(codeAssistServer);
     }
     getUserTier() {
         return this.contentGenerator?.userTier;
@@ -578,6 +606,24 @@ export class Config {
     setSessionId(sessionId) {
         this.sessionId = sessionId;
     }
+    setTerminalBackground(terminalBackground) {
+        this.terminalBackground = terminalBackground;
+    }
+    getTerminalBackground() {
+        return this.terminalBackground;
+    }
+    getLatestApiRequest() {
+        return this.latestApiRequest;
+    }
+    setLatestApiRequest(req) {
+        this.latestApiRequest = req;
+    }
+    getRemoteAdminSettings() {
+        return this.remoteAdminSettings;
+    }
+    setRemoteAdminSettings(settings) {
+        this.remoteAdminSettings = settings;
+    }
     shouldLoadMemoryFromIncludeDirectories() {
         return this.loadMemoryFromIncludeDirectories;
     }
@@ -593,16 +639,25 @@ export class Config {
     getModel() {
         return this.model;
     }
-    setModel(newModel) {
-        if (this.model !== newModel || this.inFallbackMode) {
+    setModel(newModel, isTemporary = true) {
+        if (this.model !== newModel || this._activeModel !== newModel) {
             this.model = newModel;
             // When the user explicitly sets a model, that becomes the active model.
             this._activeModel = newModel;
             coreEvents.emitModelChanged(newModel);
+            if (this.onModelChange && !isTemporary) {
+                this.onModelChange(newModel);
+            }
         }
-        this.setFallbackMode(false);
         this.modelAvailabilityService.reset();
     }
+    activateFallbackMode(model) {
+        this.setModel(model, true);
+        const authType = this.getContentGeneratorConfig()?.authType;
+        if (authType) {
+            logFlashFallback(this, new FlashFallbackEvent(authType));
+        }
+    }
     getActiveModel() {
         return this._activeModel ?? this.model;
     }
@@ -611,32 +666,14 @@ export class Config {
             this._activeModel = model;
         }
     }
-    resetTurn() {
-        this.modelAvailabilityService.resetTurn();
-    }
-    isInFallbackMode() {
-        return this.inFallbackMode;
-    }
-    setFallbackMode(active) {
-        this.inFallbackMode = active;
-    }
     setFallbackModelHandler(handler) {
         this.fallbackModelHandler = handler;
     }
     getFallbackModelHandler() {
         return this.fallbackModelHandler;
     }
-    isPreviewModelFallbackMode() {
-        return this.previewModelFallbackMode;
-    }
-    setPreviewModelFallbackMode(active) {
-        this.previewModelFallbackMode = active;
-    }
-    isPreviewModelBypassMode() {
-        return this.previewModelBypassMode;
-    }
-    setPreviewModelBypassMode(active) {
-        this.previewModelBypassMode = active;
+    resetTurn() {
+        this.modelAvailabilityService.resetTurn();
     }
     getMaxSessionTurns() {
         return this.maxSessionTurns;
@@ -679,6 +716,9 @@ export class Config {
     getPromptRegistry() {
         return this.promptRegistry;
     }
+    getSkillManager() {
+        return this.skillManager;
+    }
     getResourceRegistry() {
         return this.resourceRegistry;
     }
@@ -772,6 +812,12 @@ export class Config {
     getMcpServers() {
         return this.mcpServers;
     }
+    getMcpEnabled() {
+        return this.mcpEnabled;
+    }
+    getExtensionsEnabled() {
+        return this.extensionsEnabled;
+    }
     getMcpClientManager() {
         return this.mcpClientManager;
     }
@@ -781,10 +827,25 @@ export class Config {
     getBlockedMcpServers() {
         return this.blockedMcpServers;
     }
+    get sanitizationConfig() {
+        return {
+            allowedEnvironmentVariables: this.allowedEnvironmentVariables,
+            blockedEnvironmentVariables: this.blockedEnvironmentVariables,
+            enableEnvironmentVariableRedaction: this.enableEnvironmentVariableRedaction,
+        };
+    }
     setMcpServers(mcpServers) {
         this.mcpServers = mcpServers;
     }
     getUserMemory() {
+        if (this.experimentalJitContext && this.contextManager) {
+            return [
+                this.contextManager.getGlobalMemory(),
+                this.contextManager.getEnvironmentMemory(),
+            ]
+                .filter(Boolean)
+                .join('\n\n');
+        }
         return this.userMemory;
     }
     setUserMemory(newUserMemory) {
@@ -803,12 +864,18 @@ export class Config {
         return this.experimentalJitContext;
     }
     getGeminiMdFileCount() {
+        if (this.experimentalJitContext && this.contextManager) {
+            return this.contextManager.getLoadedPaths().size;
+        }
         return this.geminiMdFileCount;
     }
     setGeminiMdFileCount(count) {
         this.geminiMdFileCount = count;
     }
     getGeminiMdFilePaths() {
+        if (this.experimentalJitContext && this.contextManager) {
+            return Array.from(this.contextManager.getLoadedPaths());
+        }
         return this.geminiMdFilePaths;
     }
     setGeminiMdFilePaths(paths) {
@@ -975,8 +1042,8 @@ export class Config {
     getEnableExtensionReloading() {
         return this.enableExtensionReloading;
     }
-    isModelAvailabilityServiceEnabled() {
-        return this.enableModelAvailabilityService;
+    getDisableLLMCorrection() {
+        return this.disableLLMCorrection;
     }
     isAgentsEnabled() {
         return this.enableAgents;
@@ -984,6 +1051,9 @@ export class Config {
     getNoBrowser() {
         return this.noBrowser;
     }
+    getAgentsSettings() {
+        return this.agents;
+    }
     isBrowserLaunchSuppressed() {
         return this.getNoBrowser() || !shouldAttemptBrowserLaunch();
     }
@@ -1004,21 +1074,12 @@ export class Config {
      * 'false' for untrusted.
      */
     isTrustedFolder() {
-        // isWorkspaceTrusted in cli/src/config/trustedFolder.js returns undefined
-        // when the file based trust value is unavailable, since it is mainly used
-        // in the initialization for trust dialogs, etc. Here we return true since
-        // config.isTrustedFolder() is used for the main business logic of blocking
-        // tool calls etc in the rest of the application.
-        //
-        // Default value is true since we load with trusted settings to avoid
-        // restarts in the more common path. If the user chooses to mark the folder
-        // as untrusted, the CLI will restart and we will have the trust value
-        // reloaded.
         const context = ideContextStore.get();
         if (context?.workspaceState?.isTrusted !== undefined) {
             return context.workspaceState.isTrusted;
         }
-        return this.trustedFolder ?? true;
+        // Default to untrusted if folder trust is enabled and no explicit value is set.
+        return this.folderTrust ? (this.trustedFolder ?? false) : true;
     }
     setIdeMode(value) {
         this.ideMode = value;
@@ -1077,6 +1138,40 @@ export class Config {
             this.ptyInfo !== 'child_process' &&
             this.enableInteractiveShell);
     }
+    isSkillsSupportEnabled() {
+        return this.skillsSupport;
+    }
+    /**
+     * Reloads skills by re-discovering them from extensions and local directories.
+     */
+    async reloadSkills() {
+        if (!this.skillsSupport) {
+            return;
+        }
+        if (this.onReload) {
+            const refreshed = await this.onReload();
+            this.disabledSkills = refreshed.disabledSkills ?? [];
+            this.getSkillManager().setAdminSettings(refreshed.adminSkillsEnabled ?? this.adminSkillsEnabled);
+        }
+        if (this.getSkillManager().isAdminEnabled()) {
+            await this.getSkillManager().discoverSkills(this.storage, this.getExtensions());
+            this.getSkillManager().setDisabledSkills(this.disabledSkills);
+            // Re-register ActivateSkillTool to update its schema with the newly discovered skills
+            if (this.getSkillManager().getSkills().length > 0) {
+                this.getToolRegistry().unregisterTool(ActivateSkillTool.Name);
+                this.getToolRegistry().registerTool(new ActivateSkillTool(this, this.messageBus));
+            }
+            else {
+                this.getToolRegistry().unregisterTool(ActivateSkillTool.Name);
+            }
+        }
+        else {
+            this.getSkillManager().clearSkills();
+            this.getToolRegistry().unregisterTool(ActivateSkillTool.Name);
+        }
+        // Notify the client that system instructions might need updating
+        await this.updateSystemInstructionIfInitialized();
+    }
     isInteractive() {
         return this.interactive;
     }
@@ -1110,6 +1205,8 @@ export class Config {
             terminalHeight: config.terminalHeight ?? this.shellExecutionConfig.terminalHeight,
             showColor: config.showColor ?? this.shellExecutionConfig.showColor,
             pager: config.pager ?? this.shellExecutionConfig.pager,
+            sanitizationConfig: config.sanitizationConfig ??
+                this.shellExecutionConfig.sanitizationConfig,
         };
     }
     getScreenReader() {
@@ -1130,9 +1227,6 @@ export class Config {
     getTruncateToolOutputLines() {
         return this.truncateToolOutputLines;
     }
-    getUseSmartEdit() {
-        return this.useSmartEdit;
-    }
     getUseWriteTodos() {
         return this.useWriteTodos;
     }
@@ -1157,21 +1251,20 @@ export class Config {
     getPolicyEngine() {
         return this.policyEngine;
     }
-    getEnableMessageBusIntegration() {
-        return this.enableMessageBusIntegration;
-    }
     getEnableHooks() {
         return this.enableHooks;
     }
+    getEnableHooksUI() {
+        return this.enableHooksUI;
+    }
     getCodebaseInvestigatorSettings() {
         return this.codebaseInvestigatorSettings;
     }
+    getCliHelpAgentSettings() {
+        return this.cliHelpAgentSettings;
+    }
     async createToolRegistry() {
-        const registry = new ToolRegistry(this);
-        // Set message bus on tool registry before discovery so MCP tools can access it
-        if (this.getEnableMessageBusIntegration()) {
-            registry.setMessageBus(this.messageBus);
-        }
+        const registry = new ToolRegistry(this, this.messageBus);
         // helper to create & register core tools that are enabled
         // eslint-disable-next-line @typescript-eslint/no-explicit-any
         const registerCoreTool = (ToolClass, ...args) => {
@@ -1188,13 +1281,8 @@ export class Config {
                     tool.startsWith(`${normalizedClassName}(`));
             }
             if (isEnabled) {
-                // Pass message bus to tools when feature flag is enabled
-                // This first implementation is only focused on the general case of
-                // the tool registry.
-                const messageBusEnabled = this.getEnableMessageBusIntegration();
-                const toolArgs = messageBusEnabled
-                    ? [...args, this.getMessageBus()]
-                    : args;
+                // Pass message bus to tools (required for policy engine integration)
+                const toolArgs = [...args, this.getMessageBus()];
                 registry.registerTool(new ToolClass(...toolArgs));
             }
         };
@@ -1221,36 +1309,38 @@ export class Config {
             registerCoreTool(GrepTool, this);
         }
         registerCoreTool(GlobTool, this);
-        if (this.getUseSmartEdit()) {
-            registerCoreTool(SmartEditTool, this);
-        }
-        else {
-            registerCoreTool(EditTool, this);
-        }
+        registerCoreTool(ActivateSkillTool, this);
+        registerCoreTool(EditTool, this);
         registerCoreTool(WriteFileTool, this);
         registerCoreTool(WebFetchTool, this);
         registerCoreTool(ShellTool, this);
         registerCoreTool(MemoryTool);
         registerCoreTool(WebSearchTool, this);
         if (this.getUseWriteTodos()) {
-            registerCoreTool(WriteTodosTool, this);
+            registerCoreTool(WriteTodosTool);
         }
         // Register Subagents as Tools
         // Register DelegateToAgentTool if agents are enabled
+        this.registerDelegateToAgentTool(registry);
+        await registry.discoverAllTools();
+        registry.sortTools();
+        return registry;
+    }
+    /**
+     * Registers the DelegateToAgentTool if agents or related features are enabled.
+     */
+    registerDelegateToAgentTool(registry) {
         if (this.isAgentsEnabled() ||
-            this.getCodebaseInvestigatorSettings().enabled) {
+            this.getCodebaseInvestigatorSettings().enabled ||
+            this.getCliHelpAgentSettings().enabled) {
             // Check if the delegate tool itself is allowed (if allowedTools is set)
             const allowedTools = this.getAllowedTools();
             const isAllowed = !allowedTools || allowedTools.includes(DELEGATE_TO_AGENT_TOOL_NAME);
             if (isAllowed) {
-                const messageBusEnabled = this.getEnableMessageBusIntegration();
-                const delegateTool = new DelegateToAgentTool(this.agentRegistry, this, messageBusEnabled ? this.getMessageBus() : undefined);
+                const delegateTool = new DelegateToAgentTool(this.agentRegistry, this, this.getMessageBus());
                 registry.registerTool(delegateTool);
             }
         }
-        await registry.discoverAllTools();
-        registry.sortTools();
-        return registry;
     }
     /**
      * Get the hook system instance
@@ -1264,6 +1354,12 @@ export class Config {
     getHooks() {
         return this.hooks;
     }
+    /**
+     * Get project-specific hooks configuration
+     */
+    getProjectHooks() {
+        return this.projectHooks;
+    }
     /**
      * Get disabled hooks list
      */
@@ -1320,6 +1416,31 @@ export class Config {
         });
         debugLogger.debug('Experiments loaded', summaryString);
     }
+    onAgentsRefreshed = async () => {
+        if (this.toolRegistry) {
+            this.registerDelegateToAgentTool(this.toolRegistry);
+        }
+        // Propagate updates to the active chat session
+        const client = this.getGeminiClient();
+        if (client?.isInitialized()) {
+            await client.setTools();
+            await client.updateSystemInstruction();
+        }
+        else {
+            debugLogger.debug('[Config] GeminiClient not initialized; skipping live prompt/tool refresh.');
+        }
+    };
+    /**
+     * Disposes of resources and removes event listeners.
+     */
+    async dispose() {
+        coreEvents.off(CoreEvent.AgentsRefreshed, this.onAgentsRefreshed);
+        this.agentRegistry?.dispose();
+        this.geminiClient?.dispose();
+        if (this.mcpClientManager) {
+            await this.mcpClientManager.stop();
+        }
+    }
 }
 // Export model constants for use in CLI
 export { DEFAULT_GEMINI_FLASH_MODEL };