@machina.ai/cell-cli-core 1.10.0-rc1 → 1.13.0-rc1

package/dist/src/tools/shell.d.ts

@@ -8,6 +8,7 @@ import type { ToolInvocation, ToolResult, ToolCallConfirmationDetails } from './
 import { BaseDeclarativeTool, BaseToolInvocation } from './tools.js';
 import type { ShellExecutionConfig } from '../services/shellExecutionService.js';
 import type { AnsiOutput } from '../utils/terminalSerializer.js';
+import type { MessageBus } from '../confirmation-bus/message-bus.js';
 export declare const OUTPUT_UPDATE_INTERVAL_MS = 1000;
 export interface ShellToolParams {
     command: string;
@@ -17,16 +18,17 @@ export interface ShellToolParams {
 export declare class ShellToolInvocation extends BaseToolInvocation<ShellToolParams, ToolResult> {
     private readonly config;
     private readonly allowlist;
-    constructor(config: Config, params: ShellToolParams, allowlist: Set<string>);
+    constructor(config: Config, params: ShellToolParams, allowlist: Set<string>, messageBus?: MessageBus, _toolName?: string, _toolDisplayName?: string);
     getDescription(): string;
-    shouldConfirmExecute(_abortSignal: AbortSignal): Promise<ToolCallConfirmationDetails | false>;
+    protected getConfirmationDetails(_abortSignal: AbortSignal): Promise<ToolCallConfirmationDetails | false>;
     execute(signal: AbortSignal, updateOutput?: (output: string | AnsiOutput) => void, shellExecutionConfig?: ShellExecutionConfig, setPidCallback?: (pid: number) => void): Promise<ToolResult>;
+    private isInvocationAllowlisted;
 }
 export declare class ShellTool extends BaseDeclarativeTool<ShellToolParams, ToolResult> {
     private readonly config;
-    static Name: string;
+    static readonly Name = "run_shell_command";
     private allowlist;
-    constructor(config: Config);
+    constructor(config: Config, messageBus?: MessageBus);
     protected validateToolParamValues(params: ShellToolParams): string | null;
-    protected createInvocation(params: ShellToolParams): ToolInvocation<ShellToolParams, ToolResult>;
+    protected createInvocation(params: ShellToolParams, messageBus?: MessageBus, _toolName?: string, _toolDisplayName?: string): ToolInvocation<ShellToolParams, ToolResult>;
 }

package/dist/src/tools/shell.js

@@ -7,56 +7,22 @@ import fs from 'node:fs';
 import path from 'node:path';
 import os, { EOL } from 'node:os';
 import crypto from 'node:crypto';
+import { debugLogger } from '../index.js';
 import { ToolErrorType } from './tool-error.js';
 import { BaseDeclarativeTool, BaseToolInvocation, ToolConfirmationOutcome, Kind, } from './tools.js';
-import { ApprovalMode } from '../config/config.js';
+import { ApprovalMode } from '../policy/types.js';
 import { getErrorMessage } from '../utils/errors.js';
 import { summarizeToolOutput } from '../utils/summarizer.js';
 import { ShellExecutionService } from '../services/shellExecutionService.js';
 import { formatMemoryUsage } from '../utils/formatters.js';
-import { getCommandRoots, isCommandAllowed, SHELL_TOOL_NAMES, stripShellWrapper, } from '../utils/shell-utils.js';
+import { getCommandRoots, initializeShellParsers, isCommandAllowed, isShellInvocationAllowlisted, stripShellWrapper, } from '../utils/shell-utils.js';
+import { SHELL_TOOL_NAME } from './tool-names.js';
 export const OUTPUT_UPDATE_INTERVAL_MS = 1000;
-/**
- * Parses the `--allowed-tools` flag to determine which sub-commands of the
- * ShellTool are allowed. The flag can be provided multiple times.
- *
- * @param allowedTools The list of allowed tools from the config.
- * @returns A Set of allowed sub-commands, or null if all commands are allowed.
- *  - `null`: All sub-commands are allowed (e.g., --allowed-tools="ShellTool").
- *  - `Set<string>`: A set of specifically allowed sub-commands (e.g., --allowed-tools="ShellTool(wc)" --allowed-tools="ShellTool(ls)").
- *  - `Set<>` (empty): No sub-commands are allowed (e.g., --allowed-tools="ShellTool()").
- */
-function parseAllowedSubcommands(allowedTools) {
-    const shellToolEntries = allowedTools.filter((tool) => SHELL_TOOL_NAMES.some((name) => tool.startsWith(name)));
-    if (shellToolEntries.length === 0) {
-        return new Set(); // ShellTool not mentioned, so no subcommands are allowed.
-    }
-    // If any entry is just "run_shell_command" or "ShellTool", all subcommands are allowed.
-    if (shellToolEntries.some((entry) => SHELL_TOOL_NAMES.includes(entry))) {
-        return null;
-    }
-    const allSubcommands = new Set();
-    const toolNamePattern = SHELL_TOOL_NAMES.join('|');
-    const regex = new RegExp(`^(${toolNamePattern})\\((.*)\\)$`);
-    for (const entry of shellToolEntries) {
-        const match = entry.match(regex);
-        if (match) {
-            const subcommands = match[2];
-            if (subcommands) {
-                subcommands
-                    .split(',')
-                    .map((s) => s.trim())
-                    .forEach((s) => s && allSubcommands.add(s));
-            }
-        }
-    }
-    return allSubcommands;
-}
 export class ShellToolInvocation extends BaseToolInvocation {
     config;
     allowlist;
-    constructor(config, params, allowlist) {
-        super(params);
+    constructor(config, params, allowlist, messageBus, _toolName, _toolDisplayName) {
+        super(params, messageBus, _toolName, _toolDisplayName);
         this.config = config;
         this.allowlist = allowlist;
     }
@@ -73,7 +39,7 @@ export class ShellToolInvocation extends BaseToolInvocation {
         }
         return description;
     }
-    async shouldConfirmExecute(_abortSignal) {
+    async getConfirmationDetails(_abortSignal) {
         const command = stripShellWrapper(this.params.command);
         const rootCommands = [...new Set(getCommandRoots(command))];
         // In non-interactive mode, we need to prevent the tool from hanging while
@@ -82,15 +48,11 @@ export class ShellToolInvocation extends BaseToolInvocation {
         // prompting for confirmation. This check is skipped in YOLO mode.
         if (!this.config.isInteractive() &&
             this.config.getApprovalMode() !== ApprovalMode.YOLO) {
-            const allowed = this.config.getAllowedTools() || [];
-            const allowedSubcommands = parseAllowedSubcommands(allowed);
-            if (allowedSubcommands !== null) {
-                // Not all commands are allowed, so we need to check.
-                const allCommandsAllowed = rootCommands.every((cmd) => allowedSubcommands.has(cmd));
-                if (!allCommandsAllowed) {
-                    throw new Error(`Command "${command}" is not in the list of allowed tools for non-interactive mode.`);
-                }
+            if (this.isInvocationAllowlisted(command)) {
+                // If it's an allowed shell command, we don't need to confirm execution.
+                return false;
             }
+            throw new Error(`Command "${command}" is not in the list of allowed tools for non-interactive mode.`);
         }
         const commandsToConfirm = rootCommands.filter((command) => !this.allowlist.has(command));
         if (commandsToConfirm.length === 0) {
@@ -184,7 +146,7 @@ export class ShellToolInvocation extends BaseToolInvocation {
                         .filter(Boolean);
                     for (const line of pgrepLines) {
                         if (!/^\d+$/.test(line)) {
-                            console.error(`pgrep: ${line}`);
+                            debugLogger.error(`pgrep: ${line}`);
                         }
                         const pid = Number(line);
                         if (pid !== result.pid) {
@@ -194,7 +156,7 @@ export class ShellToolInvocation extends BaseToolInvocation {
                 }
                 else {
                     if (!signal.aborted) {
-                        console.error('missing pgrep output');
+                        debugLogger.error('missing pgrep output');
                     }
                 }
             }
@@ -259,8 +221,8 @@ export class ShellToolInvocation extends BaseToolInvocation {
                     },
                 }
                 : {};
-            if (summarizeConfig && summarizeConfig[ShellTool.Name]) {
-                const summary = await summarizeToolOutput(llmContent, this.config.getGeminiClient(), signal, summarizeConfig[ShellTool.Name].tokenBudget);
+            if (summarizeConfig && summarizeConfig[SHELL_TOOL_NAME]) {
+                const summary = await summarizeToolOutput(llmContent, this.config.getGeminiClient(), signal, summarizeConfig[SHELL_TOOL_NAME].tokenBudget);
                 return {
                     llmContent: summary,
                     returnDisplay: returnDisplayMessage,
@@ -279,6 +241,14 @@ export class ShellToolInvocation extends BaseToolInvocation {
             }
         }
     }
+    isInvocationAllowlisted(command) {
+        const allowedTools = this.config.getAllowedTools() || [];
+        if (allowedTools.length === 0) {
+            return false;
+        }
+        const invocation = { params: { command } };
+        return isShellInvocationAllowlisted(invocation, allowedTools);
+    }
 }
 function getShellToolDescription() {
     const returnedInfo = `
@@ -295,28 +265,28 @@ function getShellToolDescription() {
       Background PIDs: List of background processes started or \`(none)\`.
       Process Group PGID: Process group started or \`(none)\``;
     if (os.platform() === 'win32') {
-        return `This tool executes a given shell command as \`cmd.exe /c <command>\`. Command can start background processes using \`start /b\`.${returnedInfo}`;
+        return `This tool executes a given shell command as \`powershell.exe -NoProfile -Command <command>\`. Command can start background processes using PowerShell constructs such as \`Start-Process -NoNewWindow\` or \`Start-Job\`.${returnedInfo}`;
     }
     else {
         return `This tool executes a given shell command as \`bash -c <command>\`. Command can start background processes using \`&\`. Command is executed as a subprocess that leads its own process group. Command process group can be terminated as \`kill -- -PGID\` or signaled as \`kill -s SIGNAL -- -PGID\`.${returnedInfo}`;
     }
 }
 function getCommandDescription() {
-    const cmd_substitution_warning = '\n*** WARNING: Command substitution using $(), `` ` ``, <(), or >() is not allowed for security reasons.';
     if (os.platform() === 'win32') {
-        return ('Exact command to execute as `cmd.exe /c <command>`' +
-            cmd_substitution_warning);
+        return 'Exact command to execute as `powershell.exe -NoProfile -Command <command>`';
     }
     else {
-        return ('Exact bash command to execute as `bash -c <command>`' +
-            cmd_substitution_warning);
+        return 'Exact bash command to execute as `bash -c <command>`';
     }
 }
 export class ShellTool extends BaseDeclarativeTool {
     config;
-    static Name = 'run_shell_command';
+    static Name = SHELL_TOOL_NAME;
     allowlist = new Set();
-    constructor(config) {
+    constructor(config, messageBus) {
+        void initializeShellParsers().catch(() => {
+            // Errors are surfaced when parsing commands.
+        });
         super(ShellTool.Name, 'Shell', getShellToolDescription(), Kind.Execute, {
             type: 'object',
             properties: {
@@ -335,21 +305,22 @@ export class ShellTool extends BaseDeclarativeTool {
             },
             required: ['command'],
         }, false, // output is not markdown
-        true);
+        true, // output can be updated
+        messageBus);
         this.config = config;
     }
     validateToolParamValues(params) {
+        if (!params.command.trim()) {
+            return 'Command cannot be empty.';
+        }
         const commandCheck = isCommandAllowed(params.command, this.config);
         if (!commandCheck.allowed) {
             if (!commandCheck.reason) {
-                console.error('Unexpected: isCommandAllowed returned false without a reason');
+                debugLogger.error('Unexpected: isCommandAllowed returned false without a reason');
                 return `Command is not allowed: ${params.command}`;
             }
             return commandCheck.reason;
         }
-        if (!params.command.trim()) {
-            return 'Command cannot be empty.';
-        }
         if (getCommandRoots(params.command).length === 0) {
             return 'Could not identify command root to obtain permission from user.';
         }
@@ -365,8 +336,8 @@ export class ShellTool extends BaseDeclarativeTool {
         }
         return null;
     }
-    createInvocation(params) {
-        return new ShellToolInvocation(this.config, params, this.allowlist);
+    createInvocation(params, messageBus, _toolName, _toolDisplayName) {
+        return new ShellToolInvocation(this.config, params, this.allowlist, messageBus, _toolName, _toolDisplayName);
     }
 }
 //# sourceMappingURL=shell.js.map

package/dist/src/tools/shell.js.map

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package/dist/src/tools/shell.test.js

@@ -3,7 +3,7 @@
  * Copyright 2025 Google LLC
  * SPDX-License-Identifier: Apache-2.0
  */
-import { vi, describe, it, expect, beforeEach, afterEach, } from 'vitest';
+import { vi, describe, it, expect, beforeAll, beforeEach, afterEach, } from 'vitest';
 const mockShellExecutionService = vi.hoisted(() => vi.fn());
 vi.mock('../services/shellExecutionService.js', () => ({
     ShellExecutionService: { execute: mockShellExecutionService },
@@ -12,7 +12,7 @@ vi.mock('fs');
 vi.mock('os');
 vi.mock('crypto');
 vi.mock('../utils/summarizer.js');
-import { isCommandAllowed } from '../utils/shell-utils.js';
+import { initializeShellParsers, isCommandAllowed, } from '../utils/shell-utils.js';
 import { ShellTool } from './shell.js';
 import {} from '../config/config.js';
 import {} from '../services/shellExecutionService.js';
@@ -26,6 +26,9 @@ import { ToolErrorType } from './tool-error.js';
 import { ToolConfirmationOutcome } from './tools.js';
 import { OUTPUT_UPDATE_INTERVAL_MS } from './shell.js';
 import { createMockWorkspaceContext } from '../test-utils/mockWorkspaceContext.js';
+import { SHELL_TOOL_NAME } from './tool-names.js';
+const originalComSpec = process.env['ComSpec'];
+const itWindowsOnly = process.platform === 'win32' ? it : it.skip;
 describe('ShellTool', () => {
     let shellTool;
     let mockConfig;
@@ -34,6 +37,8 @@ describe('ShellTool', () => {
     beforeEach(() => {
         vi.clearAllMocks();
         mockConfig = {
+            getAllowedTools: vi.fn().mockReturnValue([]),
+            getApprovalMode: vi.fn().mockReturnValue('strict'),
             getCoreTools: vi.fn().mockReturnValue([]),
             getExcludeTools: vi.fn().mockReturnValue([]),
             getDebugMode: vi.fn().mockReturnValue(false),
@@ -50,6 +55,8 @@ describe('ShellTool', () => {
         vi.mocked(os.platform).mockReturnValue('linux');
         vi.mocked(os.tmpdir).mockReturnValue('/tmp');
         vi.mocked(crypto.randomBytes).mockReturnValue(Buffer.from('abcdef', 'hex'));
+        process.env['ComSpec'] =
+            'C:\\Windows\\System32\\WindowsPowerShell\\v1.0\\powershell.exe';
         // Capture the output callback to simulate streaming events from the service
         mockShellExecutionService.mockImplementation((_cmd, _cwd, callback) => {
             mockShellOutputCallback = callback;
@@ -61,19 +68,29 @@ describe('ShellTool', () => {
             };
         });
     });
+    afterEach(() => {
+        if (originalComSpec === undefined) {
+            delete process.env['ComSpec'];
+        }
+        else {
+            process.env['ComSpec'] = originalComSpec;
+        }
+    });
     describe('isCommandAllowed', () => {
         it('should allow a command if no restrictions are provided', () => {
             mockConfig.getCoreTools.mockReturnValue(undefined);
             mockConfig.getExcludeTools.mockReturnValue(undefined);
-            expect(isCommandAllowed('ls -l', mockConfig).allowed).toBe(true);
+            expect(isCommandAllowed('goodCommand --safe', mockConfig).allowed).toBe(true);
         });
-        it('should block a command with command substitution using $()', () => {
-            expect(isCommandAllowed('echo $(rm -rf /)', mockConfig).allowed).toBe(false);
+        it('should allow a command with command substitution using $()', () => {
+            const evaluation = isCommandAllowed('echo $(goodCommand --safe)', mockConfig);
+            expect(evaluation.allowed).toBe(true);
+            expect(evaluation.reason).toBeUndefined();
         });
     });
     describe('build', () => {
         it('should return an invocation for a valid command', () => {
-            const invocation = shellTool.build({ command: 'ls -l' });
+            const invocation = shellTool.build({ command: 'goodCommand --safe' });
             expect(invocation).toBeDefined();
         });
         it('should throw an error for an empty command', () => {
@@ -137,7 +154,7 @@ describe('ShellTool', () => {
             const wrappedCommand = `{ ls; }; __code=$?; pgrep -g 0 >${tmpFile} 2>&1; exit $__code;`;
             expect(mockShellExecutionService).toHaveBeenCalledWith(wrappedCommand, '/test/dir/subdir', expect.any(Function), mockAbortSignal, false, {});
         });
-        it('should not wrap command on windows', async () => {
+        itWindowsOnly('should not wrap command on windows', async () => {
             vi.mocked(os.platform).mockReturnValue('win32');
             const invocation = shellTool.build({ command: 'dir' });
             const promise = invocation.execute(mockAbortSignal);
@@ -153,7 +170,7 @@ describe('ShellTool', () => {
             });
             await promise;
             expect(mockShellExecutionService).toHaveBeenCalledWith('dir', '/test/dir', expect.any(Function), mockAbortSignal, false, {});
-        });
+        }, 20000);
         it('should format error messages correctly', async () => {
             const error = new Error('wrapped command failed');
             const invocation = shellTool.build({ command: 'user-command' });
@@ -193,7 +210,7 @@ describe('ShellTool', () => {
         });
         it('should summarize output when configured', async () => {
             mockConfig.getSummarizeToolOutputConfig.mockReturnValue({
-                [shellTool.name]: { tokenBudget: 1000 },
+                [SHELL_TOOL_NAME]: { tokenBudget: 1000 },
             });
             vi.mocked(summarizer.summarizeToolOutput).mockResolvedValue('summarized output');
             const invocation = shellTool.build({ command: 'ls' });
@@ -285,6 +302,46 @@ describe('ShellTool', () => {
         it('should throw an error if validation fails', () => {
             expect(() => shellTool.build({ command: '' })).toThrow();
         });
+        describe('in non-interactive mode', () => {
+            beforeEach(() => {
+                mockConfig.isInteractive.mockReturnValue(false);
+            });
+            it('should not throw an error or block for an allowed command', async () => {
+                mockConfig.getAllowedTools.mockReturnValue(['ShellTool(wc)']);
+                const invocation = shellTool.build({ command: 'wc -l foo.txt' });
+                const confirmation = await invocation.shouldConfirmExecute(new AbortController().signal);
+                expect(confirmation).toBe(false);
+            });
+            it('should not throw an error or block for an allowed command with arguments', async () => {
+                mockConfig.getAllowedTools.mockReturnValue([
+                    'ShellTool(wc -l)',
+                ]);
+                const invocation = shellTool.build({ command: 'wc -l foo.txt' });
+                const confirmation = await invocation.shouldConfirmExecute(new AbortController().signal);
+                expect(confirmation).toBe(false);
+            });
+            it('should throw an error for command that is not allowed', async () => {
+                mockConfig.getAllowedTools.mockReturnValue([
+                    'ShellTool(wc -l)',
+                ]);
+                const invocation = shellTool.build({ command: 'madeupcommand' });
+                await expect(invocation.shouldConfirmExecute(new AbortController().signal)).rejects.toThrow('madeupcommand');
+            });
+            it('should throw an error for a command that is a prefix of an allowed command', async () => {
+                mockConfig.getAllowedTools.mockReturnValue([
+                    'ShellTool(wc -l)',
+                ]);
+                const invocation = shellTool.build({ command: 'wc' });
+                await expect(invocation.shouldConfirmExecute(new AbortController().signal)).rejects.toThrow('wc');
+            });
+            it('should require all segments of a chained command to be allowlisted', async () => {
+                mockConfig.getAllowedTools.mockReturnValue([
+                    'ShellTool(echo)',
+                ]);
+                const invocation = shellTool.build({ command: 'echo "foo" && ls -l' });
+                await expect(invocation.shouldConfirmExecute(new AbortController().signal)).rejects.toThrow('Command "echo "foo" && ls -l" is not in the list of allowed tools for non-interactive mode.');
+            });
+        });
     });
     describe('getDescription', () => {
         it('should return the windows description when on windows', () => {
@@ -299,4 +356,7 @@ describe('ShellTool', () => {
         });
     });
 });
+beforeAll(async () => {
+    await initializeShellParsers();
+});
 //# sourceMappingURL=shell.test.js.map

package/dist/src/tools/shell.test.js.map

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package/dist/src/tools/smart-edit.d.ts

@@ -4,8 +4,9 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 import { BaseDeclarativeTool, type ToolInvocation, type ToolResult } from './tools.js';
+import type { MessageBus } from '../confirmation-bus/message-bus.js';
 import { ToolErrorType } from './tool-error.js';
-import { type Config } from '../config/config.js';
+import type { Config } from '../config/config.js';
 import { type ModifiableDeclarativeTool, type ModifyContext } from './modifiable-tool.js';
 interface ReplacementContext {
     params: EditToolParams;
@@ -59,7 +60,7 @@ export interface EditToolParams {
 export declare class SmartEditTool extends BaseDeclarativeTool<EditToolParams, ToolResult> implements ModifiableDeclarativeTool<EditToolParams> {
     private readonly config;
     static readonly Name = "replace";
-    constructor(config: Config);
+    constructor(config: Config, messageBus?: MessageBus);
     /**
      * Validates the parameters for the Edit tool
      * @param params Parameters to validate