@maadb/core 0.8.0 → 0.8.2

package/dist/cli/commands/maintain.js.map

@@ -1 +1 @@
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+{"version":3,"file":"maintain.js","sourceRoot":"","sources":["../../../src/cli/commands/maintain.ts"],"names":[],"mappings":"AAAA,+EAA+E;AAC/E,qDAAqD;AACrD,+EAA+E;AAE/E,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,aAAa,EAAE,MAAM,SAAS,CAAC;AAC/D,OAAO,EAAE,KAAK,EAAE,MAAM,gBAAgB,CAAC;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAC9C,OAAO,EAAE,cAAc,EAAE,kBAAkB,EAAE,MAAM,kBAAkB,CAAC;AACtE,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AACtD,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,0BAA0B,CAAC;AAE/D,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AAE3C,MAAM,CAAC,KAAK,UAAU,OAAO,CAAC,GAAe;IAC3C,MAAM,GAAG,GAAG,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC;IAC/B,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;IAE/B,OAAO,CAAC,GAAG,CAAC,gCAAgC,IAAI,EAAE,CAAC,CAAC;IAEpD,MAAM,IAAI,GAAG,CAAC,WAAW,EAAE,SAAS,EAAE,UAAU,EAAE,SAAS,CAAC,CAAC;IAC7D,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE,CAAC;QACrB,MAAM,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;QAC7B,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC;YACnB,SAAS,CAAC,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;YAClC,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC;QACjC,CAAC;IACH,CAAC;IAED,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,WAAW,EAAE,mBAAmB,CAAC,CAAC;IACvE,IAAI,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;QAC9B,aAAa,CAAC,YAAY,EAAE,aAAa,EAAE,OAAO,CAAC,CAAC;QACpD,OAAO,CAAC,GAAG,CAAC,uCAAuC,CAAC,CAAC;IACvD,CAAC;IAED,MAAM,aAAa,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,YAAY,CAAC,CAAC;IACpD,IAAI,CAAC,UAAU,CAAC,aAAa,CAAC,EAAE,CAAC;QAC/B,aAAa,CAAC,aAAa,EAAE,uBAAuB,EAAE,OAAO,CAAC,CAAC;QAC/D,OAAO,CAAC,GAAG,CAAC,sBAAsB,CAAC,CAAC;IACtC,CAAC;IAED,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC;IAC9C,IAAI,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC5B,MAAM,UAAU,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,SAAS,EAAE,QAAQ,CAAC,CAAC;QACzD,aAAa,CAAC,UAAU,EAAE,kBAAkB,CAAC,UAAU,EAAE,IAAI,CAAC,EAAE,OAAO,CAAC,CAAC;QACzE,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,CAAC;IACnC,CAAC;IAED,wDAAwD;IACxD,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,WAAW,CAAC,CAAC;IAClD,IAAI,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;QAC9B,aAAa,CAAC,YAAY,EAAE,gBAAgB,EAAE,EAAE,OAAO,CAAC,CAAC;QACzD,OAAO,CAAC,GAAG,CAAC,qBAAqB,CAAC,CAAC;IACrC,CAAC;IAED,uEAAuE;IACvE,4EAA4E;IAC5E,MAAM,YAAY,GAAG,mBAAmB,CAAC,IAAI,CAAC,CAAC;IAC/C,KAAK,MAAM,CAAC,IAAI,YAAY,CAAC,OAAO;QAAE,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,EAAE,CAAC,CAAC;IACpE,KAAK,MAAM,CAAC,IAAI,YAAY,CAAC,MAAM;QAAE,OAAO,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;IAEtF,MAAM,GAAG,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,CAAC;IAC/B,IAAI,CAAC,CAAC,MAAM,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC;QAC1B,MAAM,GAAG,CAAC,QAAQ,EAAE,CAAC;QACrB,OAAO,CAAC,GAAG,CAAC,8BAA8B,CAAC,CAAC;IAC9C,CAAC;IAED,OAAO,CAAC,GAAG,CAAC,6EAA6E,CAAC,CAAC;AAC7F,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,WAAW,CAAC,GAAe;IAC/C,MAAM,EAAE,GAAG,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACvB,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,GAAG,CAAC,CAAC;IACrC,MAAM,MAAM,CAAC,QAAQ,EAAE,CAAC;IAExB,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IACjE,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC;QACf,OAAO,CAAC,KAAK,CAAC,oBAAoB,CAAC,CAAC;QACpC,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,MAAM;YAAE,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;QAC1E,MAAM,CAAC,KAAK,EAAE,CAAC;QACf,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,MAAM,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC;IAC5B,OAAO,CAAC,GAAG,CAAC,UAAU,MAAM,CAAC,KAAK,aAAa,MAAM,CAAC,KAAK,eAAe,MAAM,CAAC,OAAO,EAAE,CAAC,CAAC;IAC5F,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC7B,KAAK,MAAM,MAAM,IAAI,MAAM,CAAC,MAAM,EAAE,CAAC;YACnC,OAAO,CAAC,GAAG,CAAC,OAAO,MAAM,CAAC,KAAe,GAAG,CAAC,CAAC;YAC9C,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,MAAM,EAAE,CAAC;gBAC9B,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;YAC9C,CAAC;QACH,CAAC;IACH,CAAC;IAED,MAAM,CAAC,KAAK,EAAE,CAAC;AACjB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,UAAU,CAAC,GAAe;IAC9C,MAAM,KAAK,GAAG,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC;IAC3C,MAAM,UAAU,GAAG,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC;IACrD,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,GAAG,CAAC,CAAC;IAErC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,2CAA2C,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC;IACtF,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,OAAO,CAAC,EAAE,KAAK,EAAE,UAAU,EAAE,CAAC,CAAC;IAC3D,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC;QACf,OAAO,CAAC,KAAK,CAAC,iBAAiB,CAAC,CAAC;QACjC,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,MAAM;YAAE,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;QAC1E,MAAM,CAAC,KAAK,EAAE,CAAC;QACf,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,MAAM,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC;IACvB,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,OAAO,eAAe,CAAC,CAAC,OAAO,eAAe,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;IACrF,6EAA6E;IAC7E,4EAA4E;IAC5E,8DAA8D;IAC9D,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,YAAY,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAChD,OAAO,CAAC,GAAG,CAAC,wCAAwC,CAAC,CAAC,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACnF,CAAC;IACD,IAAI,CAAC,CAAC,OAAO;QAAE,OAAO,CAAC,GAAG,CAAC,gCAAgC,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;IACxE,IAAI,CAAC,CAAC,MAAM;QAAE,OAAO,CAAC,GAAG,CAAC,4BAA4B,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC;IAClE,IAAI,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package/dist/engine/helpers.d.ts

@@ -12,5 +12,15 @@ export declare function readFrontmatterSync(projectRoot: string, doc: DocumentRe
 export declare function readBlockContent(projectRoot: string, doc: DocumentRecord, startLine: number, endLine: number, isPreamble: boolean): Promise<string>;
 export declare function generateDocId(prefix: string, fields: Record<string, unknown>, existingIds?: string[]): string;
 export declare function computeNumericValue(value: unknown, fieldType: string): number | null;
-export declare function collectMarkdownFiles(dirPath: string): Promise<string[]>;
+export interface CollectedMarkdownFiles {
+    files: string[];
+    /**
+     * 0.8.1 — true when fs.promises.glob threw and the manual walk ran instead.
+     * Surfaced so indexAll can warn: before 0.8.1 the fallback was silently
+     * NON-recursive, so on any runtime where glob failed, every nested doc
+     * vanished from the scan and the stale-row sweep pruned its index row.
+     */
+    usedFallback: boolean;
+}
+export declare function collectMarkdownFiles(dirPath: string): Promise<CollectedMarkdownFiles>;
 //# sourceMappingURL=helpers.d.ts.map

package/dist/engine/helpers.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"helpers.d.ts","sourceRoot":"","sources":["../../src/engine/helpers.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAElD;;;;;;GAMG;AACH,wBAAgB,kBAAkB,CAAC,WAAW,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAE/E;AAED,wBAAsB,eAAe,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,EAAE,cAAc,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAKhH;AAED,wBAAgB,mBAAmB,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,EAAE,cAAc,GAAG,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAI,CAS5G;AAED,wBAAsB,gBAAgB,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,EAAE,cAAc,EAAE,SAAS,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,CAOzJ;AAED,wBAAgB,aAAa,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,WAAW,CAAC,EAAE,MAAM,EAAE,GAAG,MAAM,CA+B7G;AAED,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,OAAO,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAqBpF;AAED,MAAM,WAAW,sBAAsB;IACrC,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB;;;;;OAKG;IACH,YAAY,EAAE,OAAO,CAAC;CACvB;AAED,wBAAsB,oBAAoB,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,sBAAsB,CAAC,CA2B3F"}

package/dist/engine/helpers.js

@@ -79,7 +79,10 @@ export function computeNumericValue(value, fieldType) {
         return isFinite(num) ? num : null;
     }
     if (fieldType === 'amount') {
-        const match = /^([\d,.]+)/.exec(String(value));
+        // 0.8.1 — tolerate a leading currency marker ("$100", "€ 1,500", "USD 25").
+        // Amounts written with a symbol previously extracted null and silently
+        // dropped out of numeric filters/sorts.
+        const match = /^\s*(?:[^\d\s]{1,3}|[A-Za-z]{3})?\s*([\d,.]+)/.exec(String(value));
         if (match) {
             const num = parseFloat(match[1].replace(/,/g, ''));
             return isFinite(num) ? num : null;
@@ -97,16 +100,26 @@ export async function collectMarkdownFiles(dirPath) {
                 continue;
             files.push(path.join(dirPath, entry));
         }
+        return { files, usedFallback: false };
     }
     catch {
+        // Recursive manual walk — must match glob('**/*.md') coverage. The
+        // pre-0.8.1 fallback read only the top directory, which silently dropped
+        // every nested doc from the scan.
         const { readdir } = await import('node:fs/promises');
-        const entries = await readdir(dirPath, { withFileTypes: true });
-        for (const entry of entries) {
-            if (entry.isFile() && entry.name.endsWith('.md') && !entry.name.startsWith('_deleted_')) {
-                files.push(path.join(dirPath, entry.name));
+        const walk = async (dir) => {
+            const entries = await readdir(dir, { withFileTypes: true });
+            for (const entry of entries) {
+                if (entry.isDirectory()) {
+                    await walk(path.join(dir, entry.name));
+                }
+                else if (entry.isFile() && entry.name.endsWith('.md') && !entry.name.startsWith('_deleted_')) {
+                    files.push(path.join(dir, entry.name));
+                }
             }
-        }
+        };
+        await walk(dirPath);
+        return { files, usedFallback: true };
     }
-    return files;
 }
 //# sourceMappingURL=helpers.js.map

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package/dist/engine/indexing.d.ts

@@ -5,7 +5,9 @@ import type { IndexResult } from './types.js';
 export declare function indexAll(ctx: EngineContext, opts?: {
     force?: boolean;
 }): Promise<IndexResult>;
-export declare function indexFile(ctx: EngineContext, absolutePath: FilePath): Promise<Result<ExtractionResult>>;
+export declare function indexFile(ctx: EngineContext, absolutePath: FilePath, opts?: {
+    raw?: string;
+}): Promise<Result<ExtractionResult>>;
 export declare function processDocument(ctx: EngineContext, parsed: ParsedDocument): Result<ExtractionResult>;
 export declare function reindex(ctx: EngineContext, opts?: {
     docId?: DocId;

package/dist/engine/indexing.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"indexing.d.ts","sourceRoot":"","sources":["../../src/engine/indexing.ts"],"names":[],"mappings":"AASA,OAAO,EAAsB,KAAK,MAAM,EAAE,MAAM,cAAc,CAAC;AAE/D,OAAO,EAIL,KAAK,KAAK,EAEV,KAAK,QAAQ,EACb,KAAK,cAAc,EAGnB,KAAK,gBAAgB,EAGtB,MAAM,aAAa,CAAC;AAIrB,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAClD,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAwB9C,wBAAsB,QAAQ,CAAC,GAAG,EAAE,aAAa,EAAE,IAAI,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,OAAO,CAAC,WAAW,CAAC,CAgGnG;AA2CD,wBAAsB,SAAS,CAAC,GAAG,EAAE,aAAa,EAAE,YAAY,EAAE,QAAQ,GAAG,OAAO,CAAC,MAAM,CAAC,gBAAgB,CAAC,CAAC,CA0C7G;AAED,wBAAgB,eAAe,CAAC,GAAG,EAAE,aAAa,EAAE,MAAM,EAAE,cAAc,GAAG,MAAM,CAAC,gBAAgB,CAAC,CAiJpG;AAED,wBAAsB,OAAO,CAAC,GAAG,EAAE,aAAa,EAAE,IAAI,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,KAAK,CAAC;IAAC,KAAK,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,OAAO,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAYzH"}
+{"version":3,"file":"indexing.d.ts","sourceRoot":"","sources":["../../src/engine/indexing.ts"],"names":[],"mappings":"AASA,OAAO,EAAsB,KAAK,MAAM,EAAE,MAAM,cAAc,CAAC;AAE/D,OAAO,EAIL,KAAK,KAAK,EAEV,KAAK,QAAQ,EACb,KAAK,cAAc,EAGnB,KAAK,gBAAgB,EAGtB,MAAM,aAAa,CAAC;AAIrB,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAClD,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAwB9C,wBAAsB,QAAQ,CAAC,GAAG,EAAE,aAAa,EAAE,IAAI,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,OAAO,CAAC,WAAW,CAAC,CA4LnG;AA2CD,wBAAsB,SAAS,CAC7B,GAAG,EAAE,aAAa,EAClB,YAAY,EAAE,QAAQ,EACtB,IAAI,CAAC,EAAE;IAAE,GAAG,CAAC,EAAE,MAAM,CAAA;CAAE,GACtB,OAAO,CAAC,MAAM,CAAC,gBAAgB,CAAC,CAAC,CA0DnC;AAED,wBAAgB,eAAe,CAAC,GAAG,EAAE,aAAa,EAAE,MAAM,EAAE,cAAc,GAAG,MAAM,CAAC,gBAAgB,CAAC,CA+MpG;AAED,wBAAsB,OAAO,CAAC,GAAG,EAAE,aAAa,EAAE,IAAI,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,KAAK,CAAC;IAAC,KAAK,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,OAAO,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAYzH"}

package/dist/engine/indexing.js

@@ -1,14 +1,14 @@
 // ============================================================================
 // Indexing — indexAll, indexFile, processDocument, reindex
 // ============================================================================
-import { existsSync, statSync } from 'node:fs';
-import { readFile } from 'node:fs/promises';
+import { existsSync } from 'node:fs';
+import { readFile, stat } from 'node:fs/promises';
 import { createHash } from 'node:crypto';
 import path from 'node:path';
 import { ok, err, singleErr } from '../errors.js';
 import { logger } from './logger.js';
 import { docId as toDocId, docType as toDocType, filePath as toFilePath, } from '../types.js';
-import { parseDocument } from '../parser/index.js';
+import { parseDocument, parseDocumentFromContent } from '../parser/index.js';
 import { validateFrontmatter } from '../schema/index.js';
 import { extract } from '../extractor/index.js';
 import { collectMarkdownFiles, computeNumericValue, toCanonicalRelPath } from './helpers.js';
@@ -34,6 +34,7 @@ const SCHEMA_FP_KEY_PREFIX = 'schema_index_fp:';
 export async function indexAll(ctx, opts) {
     const force = opts?.force ?? false;
     const result = { scanned: 0, indexed: 0, skipped: 0, errors: [] };
+    const warnings = [];
     // 0.7.4 — Detect schema-index changes per type. Types whose fingerprint
     // changed (or was never recorded) join `dirtyTypes`, which overrides the
     // file-hash skip path below so docs of those types reindex even if their
@@ -54,15 +55,51 @@ export async function indexAll(ctx, opts) {
         if (stored !== fp)
             dirtyTypes.add(typeName);
     }
-    const storedHashes = force ? new Map() : ctx.backend.getAllFileHashes();
+    // 0.8.1 — types with at least one per-doc index error this run. Their
+    // schema fingerprints are NOT persisted below, so a dirty type whose forced
+    // rebuild partially failed stays dirty and retries on the next pass
+    // (previously the fingerprint persisted anyway and the failed docs
+    // hash-skipped forever).
+    const typesWithErrors = new Set();
+    // 0.8.1 — single snapshot serves both the skip-by-hash lookup and the
+    // stale-row sweep (previously fetched twice — two full-table scans, and
+    // the force path threw the first away).
+    const storedHashes = ctx.backend.getAllFileHashes();
     const filesOnDisk = new Set();
+    const byteCap = maxDocBytes();
+    const docCountByType = ctx.backend.getStats().documentCountByType;
     for (const [typeName, regType] of ctx.registry.types) {
         const isTypeDirty = dirtyTypes.has(typeName);
         const dirPath = path.join(ctx.projectRoot, regType.path);
-        if (!existsSync(dirPath))
+        if (!existsSync(dirPath)) {
+            // 0.8.1 — a missing registered path is only noise for a type with no
+            // docs yet; with indexed rows it is the exact registry-mismatch shape
+            // that made the sweep prune valid docs (kebab vs underscore dir).
+            const indexedCount = docCountByType[typeName] ?? 0;
+            if (indexedCount > 0) {
+                warnings.push(`registered path "${regType.path}" for type "${typeName}" does not exist on disk, ` +
+                    `but the index holds ${indexedCount} doc(s) of this type — check the path mapping in _registry/object_types.yaml`);
+            }
+            continue;
+        }
+        const collected = await collectMarkdownFiles(dirPath);
+        if (collected.usedFallback) {
+            warnings.push(`glob scan failed under "${regType.path}" — recursive readdir fallback used; ` +
+                `if this repeats, check the Node runtime's fs.promises.glob support`);
+        }
+        // 0.8.1 — empty registered dir while the index holds rows of the type:
+        // the registry points somewhere the docs aren't (the registry loader
+        // creates missing dirs at load, so a path mismatch usually presents as
+        // an empty dir here rather than a missing one).
+        if (collected.files.length === 0) {
+            const indexedCount = docCountByType[typeName] ?? 0;
+            if (indexedCount > 0) {
+                warnings.push(`registered path "${regType.path}" for type "${typeName}" contains no markdown files, ` +
+                    `but the index holds ${indexedCount} doc(s) of this type — check the path mapping in _registry/object_types.yaml`);
+            }
             continue;
-        const files = await collectMarkdownFiles(dirPath);
-        for (const file of files) {
+        }
+        for (const file of collected.files) {
             result.scanned++;
             // 0.7.12 — canonical (forward-slash) form for both the skip-by-hash
             // lookup against getAllFileHashes (which now stores '/' post-0.7.12)
@@ -70,10 +107,30 @@ export async function indexAll(ctx, opts) {
             const fp = toFilePath(toCanonicalRelPath(ctx.projectRoot, file));
             const absPath = toFilePath(file);
             filesOnDisk.add(fp);
+            // 0.8.1 — stat before read: an over-cap file must not be read at all
+            // (reading it just to hash-skip defeats the byte backstop), and reading
+            // once here lets indexFile parse from content instead of re-reading.
+            let raw;
+            let overCap = false;
+            if (byteCap > 0) {
+                try {
+                    overCap = (await stat(file)).size > byteCap;
+                }
+                catch {
+                    // stat failure falls through; indexFile surfaces the real error.
+                }
+            }
+            if (!overCap) {
+                try {
+                    raw = await readFile(file, 'utf-8');
+                }
+                catch {
+                    // read failure falls through; indexFile surfaces FILE_READ_ERROR.
+                }
+            }
             // Skip-by-hash only applies when neither --force nor a schema-fingerprint
             // change is in play. Otherwise we rebuild even if disk content matches.
-            if (!force && !isTypeDirty) {
-                const raw = await readFile(file, 'utf-8');
+            if (raw !== undefined && !force && !isTypeDirty) {
                 const currentHash = createHash('sha256').update(raw).digest('hex');
                 const storedHash = storedHashes.get(fp);
                 if (storedHash === currentHash) {
@@ -81,7 +138,7 @@ export async function indexAll(ctx, opts) {
                     continue;
                 }
             }
-            const indexResult = await indexFile(ctx, absPath);
+            const indexResult = await indexFile(ctx, absPath, raw !== undefined ? { raw } : undefined);
             if (indexResult.ok) {
                 result.indexed++;
                 if (indexResult.value.annotationsTruncated) {
@@ -89,29 +146,58 @@ export async function indexAll(ctx, opts) {
                 }
             }
             else {
+                typesWithErrors.add(typeName);
                 result.errors.push(...indexResult.errors);
             }
         }
     }
-    // Remove stale backend records
-    const allStoredPaths = ctx.backend.getAllFileHashes();
-    for (const [storedPath] of allStoredPaths) {
-        if (!filesOnDisk.has(storedPath)) {
-            const doc = ctx.backend.getDocumentByPath(storedPath);
-            if (doc) {
-                ctx.backend.removeDocument(doc.docId);
-            }
+    // Remove stale backend records — but never a row whose file still exists on
+    // disk. A stale row with a live file means the file sits outside every
+    // scanned registered path (registry path mismatch, glob failure, moved
+    // directory): pruning it silently orphans valid data, so keep the row and
+    // warn instead. Only rows whose files are genuinely gone are removed.
+    let pruned = 0;
+    const keptByType = new Map();
+    for (const [storedPath] of storedHashes) {
+        if (filesOnDisk.has(storedPath))
+            continue;
+        const doc = ctx.backend.getDocumentByPath(storedPath);
+        if (!doc)
+            continue;
+        // Row already re-pointed at a scanned file this run (separator/case
+        // migration of a legacy path) — nothing stale about it.
+        if (filesOnDisk.has(doc.filePath))
+            continue;
+        if (existsSync(path.join(ctx.projectRoot, storedPath))) {
+            keptByType.set(doc.docType, (keptByType.get(doc.docType) ?? 0) + 1);
+            continue;
         }
+        ctx.backend.removeDocument(doc.docId);
+        pruned++;
+    }
+    for (const [typeName, count] of keptByType) {
+        const regPath = ctx.registry.types.get(toDocType(typeName))?.path ?? '(unregistered)';
+        warnings.push(`kept ${count} index row(s) of type "${typeName}" whose files exist on disk but were not scanned ` +
+            `(registered path: "${regPath}") — not pruned; check the path mapping in _registry/object_types.yaml`);
     }
     // 0.7.4 — Persist current fingerprints AFTER successful rebuild so a
     // crash mid-reindex leaves the prior fingerprint in place; next run sees
-    // the diff again and retries.
+    // the diff again and retries. 0.8.1 — same retry contract for per-doc
+    // failures: types that errored keep their old fingerprint (stay dirty).
     for (const [typeName, fp] of currentFingerprints) {
+        if (typesWithErrors.has(typeName))
+            continue;
         ctx.backend.setMeta(`${SCHEMA_FP_KEY_PREFIX}${typeName}`, fp);
     }
     if (dirtyTypes.size > 0) {
         result.rebuiltTypes = [...dirtyTypes].sort();
     }
+    if (pruned > 0)
+        result.pruned = pruned;
+    if (warnings.length > 0) {
+        result.warnings = warnings;
+        logger.degraded('engine', 'index_scan_warnings', `indexAll completed with ${warnings.length} warning(s) — the registry and the on-disk layout disagree`, { warnings });
+    }
     // 0.7.17 — refresh planner statistics after a rebuild touched rows. Skipped
     // on a no-op pass (everything hash-skipped) so steady-state reindex polling
     // doesn't pay for an ANALYZE that would change nothing.
@@ -162,22 +248,38 @@ function maxDocAnnotations() {
         return DEFAULT_MAX_DOC_ANNOTATIONS;
     return n; // 0 = disabled
 }
-export async function indexFile(ctx, absolutePath) {
+export async function indexFile(ctx, absolutePath, opts) {
     // Backstop: a stat is cheap, and reading + line-splitting a multi-hundred-MB
     // file is itself a heap risk before any extraction cap can apply. Skip those.
+    // 0.8.1 — when the caller already read the file (indexAll's single-read
+    // path), size the in-memory content instead of re-statting.
     const byteCap = maxDocBytes();
     if (byteCap > 0) {
         let sizeBytes = 0;
-        try {
-            sizeBytes = statSync(absolutePath).size;
+        if (opts?.raw !== undefined) {
+            sizeBytes = Buffer.byteLength(opts.raw, 'utf-8');
         }
-        catch {
-            // stat failure falls through to parseDocument, which surfaces the real
-            // FILE_READ_ERROR with proper location info.
-            sizeBytes = 0;
+        else {
+            try {
+                sizeBytes = (await stat(absolutePath)).size;
+            }
+            catch {
+                // stat failure falls through to parseDocument, which surfaces the real
+                // FILE_READ_ERROR with proper location info.
+                sizeBytes = 0;
+            }
         }
         if (sizeBytes > byteCap) {
-            logger.degraded('engine', 'doc_too_large', `skipped oversized document (${sizeBytes} bytes > cap ${byteCap}); too large to read safely`, { file: absolutePath, sizeBytes, capBytes: byteCap });
+            // 0.8.1 — a previously indexed doc that grew past the cap keeps serving
+            // its last indexed content: the row is deliberately retained (the doc
+            // stays findable) but flagged partial so the staleness is queryable
+            // instead of invisible.
+            const rel = toCanonicalRelPath(ctx.projectRoot, absolutePath);
+            const existingRow = ctx.backend.getDocumentByPath(toFilePath(rel));
+            if (existingRow)
+                ctx.backend.markDocumentStale(existingRow.docId);
+            logger.degraded('engine', 'doc_too_large', `skipped oversized document (${sizeBytes} bytes > cap ${byteCap}); too large to read safely` +
+                (existingRow ? '; existing index row retained at its last indexed content and flagged partial' : ''), { file: absolutePath, sizeBytes, capBytes: byteCap, staleRowRetained: existingRow !== null });
             return singleErr('DOC_TOO_LARGE', `Document ${absolutePath} is ${sizeBytes} bytes, over the ${byteCap}-byte read cap (MAAD_MAX_DOC_BYTES). Skipped to protect the engine; split the document or raise the cap with matching heap headroom.`, { file: absolutePath, line: 0, col: 0 }, { sizeBytes, capBytes: byteCap });
         }
     }
@@ -190,7 +292,9 @@ export async function indexFile(ctx, absolutePath) {
     const parseOpts = { includeBlockText: ctx.semanticEnabled };
     if (annoCap > 0)
         parseOpts.maxAnnotations = annoCap;
-    const parsed = await parseDocument(absolutePath, ctx.registry.subtypeMap, parseOpts);
+    const parsed = opts?.raw !== undefined
+        ? parseDocumentFromContent(opts.raw, absolutePath, ctx.registry.subtypeMap, parseOpts)
+        : await parseDocument(absolutePath, ctx.registry.subtypeMap, parseOpts);
     if (!parsed.ok)
         return parsed;
     if (parsed.value.annotationsTruncated) {
@@ -228,6 +332,9 @@ export function processDocument(ctx, parsed) {
                 name: fieldName,
                 value,
                 fieldType: fieldDef.type,
+                // 0.8.1 — carried through so list-of-number/amount items get real
+                // numeric index values (previously hardcoded to string → null).
+                itemType: fieldDef.itemType,
                 role: fieldDef.role,
                 indexed: fieldDef.index,
             };
@@ -248,6 +355,39 @@ export function processDocument(ctx, parsed) {
     // canonicalization; reuse it across all write-path sites.
     const relativePath = toCanonicalRelPath(ctx.projectRoot, parsed.filePath);
     const existing = ctx.backend.getDocument(bound.docId);
+    // 0.8.1 — duplicate-docId guard on the index path. Two live files sharing a
+    // doc_id previously collapsed silently: the second one scanned REPLACEd the
+    // first's row (registry-iteration order decided the winner) and the loser
+    // stayed on disk unindexed. The write path has always rejected this
+    // (writes.ts DUPLICATE_DOC_ID); the index path now does too. A row whose old
+    // file is gone is a legitimate move and falls through to the normal update.
+    // Paths compare in canonical forward-slash form (legacy pre-0.7.12 rows
+    // store backslash), case-insensitively on Windows/macOS where one on-disk
+    // file answers to both casings — either difference alone is the SAME file
+    // lazily migrating, not a collision.
+    if (existing) {
+        const caseFold = process.platform === 'win32' || process.platform === 'darwin';
+        const normalize = (p) => {
+            const canonical = p.replaceAll('\\', '/');
+            return caseFold ? canonical.toLowerCase() : canonical;
+        };
+        if (normalize(existing.filePath) !== normalize(relativePath)) {
+            const oldAbs = path.join(ctx.projectRoot, existing.filePath);
+            if (existsSync(oldAbs)) {
+                return singleErr('DUPLICATE_DOC_ID', `doc_id "${bound.docId}" is claimed by two files: "${existing.filePath}" (indexed) and "${relativePath}". ` +
+                    `The indexed row was left unchanged; fix the duplicate doc_id in one of the files and reindex.`, { file: parsed.filePath, line: 0, col: 0 }, { indexedPath: existing.filePath, conflictingPath: relativePath });
+            }
+        }
+    }
+    // 0.8.1 — doc_id changed in place (same file, new id in frontmatter). The
+    // superseded row is removed explicitly and audibly — previously INSERT OR
+    // REPLACE resolved the file_path conflict by silently deleting it as a side
+    // effect (and could destroy an unrelated doc's row the same way).
+    const existingByPath = ctx.backend.getDocumentByPath(toFilePath(relativePath));
+    if (existingByPath && existingByPath.docId !== bound.docId) {
+        logger.info('engine', 'doc_id_changed_in_place', `doc_id at "${relativePath}" changed from "${existingByPath.docId}" to "${bound.docId}"; superseded index row removed`, { filePath: relativePath, oldDocId: existingByPath.docId, newDocId: bound.docId });
+        ctx.backend.removeDocument(existingByPath.docId);
+    }
     // Only bump version when file content actually changed — reindex of unchanged files preserves version
     const contentChanged = !existing || existing.fileHash !== parsed.fileHash;
     const version = existing
@@ -275,6 +415,10 @@ export function processDocument(ctx, parsed) {
         // invalid records instead of re-reading every file. `validation` was
         // computed above in mode 'index'.
         valid: validation.valid,
+        // 0.8.1 — persist the annotation-cap state so "which docs indexed with
+        // partial body objects" survives the run (previously only a transient
+        // IndexResult counter + a log line). Clean reindex clears it.
+        partial: parsed.annotationsTruncated === true,
     };
     const fieldIndex = [];
     for (const [name, field] of Object.entries(validatedFields)) {
@@ -288,7 +432,10 @@ export function processDocument(ctx, parsed) {
                     fieldIndex.push({
                         name,
                         value: itemValue,
-                        numericValue: computeNumericValue(item, 'string'),
+                        // 0.8.1 — use the list's item_type (was hardcoded 'string', so
+                        // list-of-number/amount items always indexed numericValue null
+                        // and never matched numeric range filters).
+                        numericValue: computeNumericValue(item, field.itemType ?? 'string'),
                         type: field.fieldType,
                     });
                 }
@@ -321,7 +468,18 @@ export function processDocument(ctx, parsed) {
             semanticBlocks.push({ blockOrd: i, blockId: b.id, heading: b.heading, text });
         });
     }
-    ctx.backend.materializeDocument(docRecord, extraction.objects, extraction.relationships, parsed.blocks, fieldIndex, semanticBlocks);
+    // 0.8.1 — the targeted upsert in putDocument raises SQLITE_CONSTRAINT on a
+    // file_path conflict instead of silently deleting the other doc's row. The
+    // guards above resolve every legitimate case, so a throw here is a real
+    // collision (or backend fault) that must surface as an indexing error, not
+    // escape the engine's Result contract.
+    try {
+        ctx.backend.materializeDocument(docRecord, extraction.objects, extraction.relationships, parsed.blocks, fieldIndex, semanticBlocks);
+    }
+    catch (e) {
+        const message = e instanceof Error ? e.message : String(e);
+        return singleErr('BACKEND_ERROR', `Failed to materialize "${bound.docId}" (${relativePath}): ${message}`, { file: parsed.filePath, line: 0, col: 0 });
+    }
     // Carry the partial-index signal up so indexAll can tally it. The record +
     // frontmatter above are always written in full; only body objects are capped.
     if (parsed.annotationsTruncated)

package/dist/engine/indexing.js.map

@@ -1 +1 @@
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package/dist/engine/reads.d.ts.map

@@ -1 +1 @@
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package/dist/engine/reads.js

@@ -282,6 +282,9 @@ export function summary(ctx) {
     // same posture as the read-mode validation this replaced.
     const brokenRefs = ctx.backend.countBrokenRefs();
     const validationErrors = ctx.backend.countInvalidDocuments();
+    // 0.8.1 — partial/stale rows (annotation-capped bodies, over-byte-cap docs
+    // serving their last indexed content), persisted at index time.
+    const partialDocs = ctx.backend.countPartialDocuments();
     const emptyProject = ctx.registry.types.size === 0 && stats.totalDocuments === 0;
     return {
         types,
@@ -289,7 +292,7 @@ export function summary(ctx) {
         totalObjects: stats.totalObjects,
         totalRelationships: stats.totalRelationships,
         lastIndexedAt: stats.lastIndexedAt,
-        warnings: { brokenRefs, validationErrors },
+        warnings: { brokenRefs, validationErrors, partialDocs },
         emptyProject,
         bootstrapHint: emptyProject ? '_skills/architect-core.md' : null,
         readOnly: ctx.readOnly,
@@ -728,7 +731,7 @@ export async function verifyIntegrity(ctx, query = {}) {
         const dirPath = path.join(ctx.projectRoot, regType.path);
         if (!existsSync(dirPath))
             continue;
-        const files = await collectMarkdownFiles(dirPath);
+        const { files } = await collectMarkdownFiles(dirPath);
         for (const file of files) {
             // 0.7.12 — write-path canonicalizes file_path to forward slashes and
             // getDocumentByPath is now separator-tolerant, so the prior two-forms