@lzehrung/codegraph 2.3.5 → 2.3.7

package/dist/bin/cli.js

@@ -13534,6 +13534,7 @@ __export(git_exports, {
   isGitWorktreeSentinel: () => isGitWorktreeSentinel,
   listChangedFiles: () => listChangedFiles,
   listGitExcludeFiles: () => listGitExcludeFiles,
+  listGitIgnoreFiles: () => listGitIgnoreFiles,
   listGitSubmoduleDirectories: () => listGitSubmoduleDirectories,
   listTrackedFiles: () => listTrackedFiles,
   listUntrackedFiles: () => listUntrackedFiles,
@@ -13969,6 +13970,32 @@ async function listTrackedFiles(projectRoot, opts) {
     throw createGitError(projectRoot, args, error51);
   }
 }
+async function listGitIgnoreFiles(projectRoot, opts) {
+  if (!(opts?.gitAvailable ?? true))
+    return [];
+  const pathspec = [".gitignore", ":(glob)**/.gitignore"];
+  const commands = [
+    ["ls-files", "--cached", "-z", "--", ...pathspec],
+    ["ls-files", "--others", "--exclude-standard", "-z", "--", ...pathspec],
+    ["ls-files", "--others", "--ignored", "--exclude-standard", "-z", "--", ...pathspec]
+  ];
+  const results = await Promise.all(commands.map(async (args) => {
+    try {
+      return await runGit(projectRoot, args, { maxBuffer: 64 * 1024 * 1024 });
+    } catch (error51) {
+      throw createGitError(projectRoot, args, error51);
+    }
+  }));
+  const out = [];
+  for (const { stdout } of results) {
+    for (const rel of stdout.split("\0").filter(Boolean)) {
+      const abs = resolveGitListedPath(projectRoot, rel);
+      if (abs)
+        out.push(abs);
+    }
+  }
+  return Array.from(new Set(out));
+}
 async function listGitSubmoduleDirectories(projectRoot, opts) {
   if (!(opts?.gitAvailable ?? true))
     return [];
@@ -14380,24 +14407,24 @@ function collectCandidateAncestorDirectories(root, files) {
   }
   return directories;
 }
-async function findGitIgnoreSources(sourceRoots, files) {
+async function findGitIgnoreSources(sourceRoots) {
   const roots = Array.from(new Map(sourceRoots.map(({ path: sourceRoot, repositoryRoot }) => [
     fileIdentityKey(sourceRoot),
     { path: normalizePath(sourceRoot), repositoryRoot: normalizePath(repositoryRoot) }
   ])).values());
   const sources = [];
   for (const { path: sourceRoot, repositoryRoot } of roots) {
-    const directories = collectCandidateAncestorDirectories(sourceRoot, files.filter((file2) => isFilePathWithinRoot(sourceRoot, file2)));
-    const present = await mapLimitSemaphore(directories, REALPATH_FILTER_CONCURRENCY, async (directory) => {
-      const candidate = normalizePath(path9.join(directory, ".gitignore"));
-      try {
-        return (await fsp5.stat(candidate)).isFile() ? { file: candidate, baseDir: directory, repositoryRoot, priority: 2 } : null;
-      } catch {
-        return null;
-      }
-    });
-    sources.push(...present.filter((entry) => entry !== null));
-    sources.push(...(await listGitExcludeFiles(sourceRoot)).map((source) => ({
+    const [gitignoreFiles, excludeFiles] = await Promise.all([
+      listGitIgnoreFiles(sourceRoot),
+      listGitExcludeFiles(sourceRoot)
+    ]);
+    sources.push(...gitignoreFiles.map((file2) => ({
+      file: file2,
+      baseDir: path9.dirname(file2),
+      repositoryRoot,
+      priority: 2
+    })));
+    sources.push(...excludeFiles.map((source) => ({
       ...source,
       repositoryRoot: source.baseDir
     })));
@@ -14428,13 +14455,6 @@ async function listGitCandidateFiles(root, logLevel) {
     const rawFiles = Array.from(/* @__PURE__ */ new Set([...tracked, ...untracked, ...submoduleUntracked.flat()])).sort();
     const needsLogicalRemap = normalizePath(gitRoot) !== normalizePath(root);
     const files = Array.from(new Set(rawFiles.map((file2) => needsLogicalRemap && isFilePathWithinRoot(realRoot, file2) ? normalizePath(path9.resolve(root, path9.relative(realRoot, file2))) : normalizePath(file2)))).sort();
-    const physicalFiles = normalizePath(root) === realRoot ? [] : (await mapLimitSemaphore(files, REALPATH_FILTER_CONCURRENCY, async (file2) => {
-      try {
-        return normalizePath(await fsp5.realpath(file2));
-      } catch {
-        return null;
-      }
-    })).filter((file2) => file2 !== null);
     const gitignoreRoots = [gitRepositoryRoot, ...submoduleRoots.map(({ physicalPath }) => physicalPath)].map(normalizePath);
     const sourceRoots = [
       { path: root, repositoryRoot: gitRepositoryRoot },
@@ -14447,7 +14467,7 @@ async function listGitCandidateFiles(root, logLevel) {
     ];
     return {
       files,
-      gitignoreFiles: await findGitIgnoreSources(sourceRoots, [...rawFiles, ...files, ...physicalFiles]),
+      gitignoreFiles: await findGitIgnoreSources(sourceRoots),
       gitignoreRoots,
       gitignoreAliases: sourceRoots
     };
@@ -53074,12 +53094,17 @@ var init_parsed_cache = __esm({
 // dist/indexer/finalize.js
 import { performance as performance2 } from "node:perf_hooks";
 async function finalizeProjectIndex(args) {
-  if (args.timings)
-    args.timings.totalMs = Math.round(performance2.now() - args.totalStart);
+  const discoveryTimings = args.opts?.report ? args.opts.report.timings ??= {} : void 0;
+  const metadataDiscoveryStart = args.projectFiles === void 0 ? performance2.now() : void 0;
   const projectFiles = await (args.projectFiles ?? discoverProjectFilesWithGitCandidates(args.projectRoot, {
     ...args.opts?.logLevel ? { logLevel: args.opts.logLevel } : {},
     ...args.knownGitCandidates !== void 0 ? { knownGitCandidates: args.knownGitCandidates } : {}
   }));
+  if (metadataDiscoveryStart !== void 0 && discoveryTimings) {
+    discoveryTimings.metadataDiscoveryMs = Math.round(performance2.now() - metadataDiscoveryStart);
+  }
+  if (args.timings)
+    args.timings.totalMs = Math.round(performance2.now() - args.totalStart);
   const languageExtensions = normalizeLanguageExtensions(args.opts?.languageExtensions);
   const parsed = retainedParsedCache(args.parsedMap, args.opts);
   return {
@@ -55698,6 +55723,7 @@ async function buildIndexFromFileListShared(projectRoot, rawFiles, opts, helperO
   }
 }
 async function buildProjectIndexWithManifestOptions(projectRoot, opts, helperOpts) {
+  const timings = opts?.report ? opts.report.timings ??= {} : void 0;
   await initializeFileIdentityCaseSensitivity(projectRoot);
   try {
     const useDiskCache = (opts?.cache ?? "off") === "disk";
@@ -55717,6 +55743,7 @@ async function buildProjectIndexWithManifestOptions(projectRoot, opts, helperOpt
     const onDiscoveryProgress = helperOpts?.reportDiscoveryProgress ? (progress) => emitIndexCheckActivity(opts, progress.activity, progress.current, progress.total) : void 0;
     if (helperOpts?.reportDiscoveryProgress)
       emitIndexCheckActivity(opts, "Discovering source files");
+    const sourceDiscoveryStart = performance5.now();
     const discoveredFiles = await listProjectFilesWithGitCandidates(projectRoot, projectPatternsForLanguageExtensions(opts), {
       ...opts?.discovery,
       ...opts?.logLevel ? { logLevel: opts.logLevel } : {},
@@ -55725,6 +55752,8 @@ async function buildProjectIndexWithManifestOptions(projectRoot, opts, helperOpt
       onGitCandidatesDiscovered,
       ...onDiscoveryProgress ? { onDiscoveryProgress } : {}
     });
+    if (timings)
+      timings.sourceDiscoveryMs = Math.round(performance5.now() - sourceDiscoveryStart);
     const additionalFileCandidates = await normalizeIndexedFileInputsWithinRoot(projectRoot, opts?.additionalFiles ?? [], "Additional index file");
     const additionalFileExistence = await probePathExistence(additionalFileCandidates, buildConcurrency(opts));
     const additionalFiles = additionalFileCandidates.filter((file2) => additionalFileExistence.get(file2));
@@ -55733,12 +55762,15 @@ async function buildProjectIndexWithManifestOptions(projectRoot, opts, helperOpt
     const transientFiles = additionalFiles.filter((file2) => !discoveredFileSet.has(file2));
     if (helperOpts?.reportDiscoveryProgress)
       emitIndexCheckActivity(opts, "Discovering project metadata");
+    const metadataDiscoveryStart = performance5.now();
     const projectFiles = await discoverProjectFilesWithGitCandidates(projectRoot, {
       ...opts?.logLevel ? { logLevel: opts.logLevel } : {},
       ...discoveredSymlinkDirectories !== void 0 ? { knownSymlinkDirectories: discoveredSymlinkDirectories } : {},
       ...discoveredGitCandidates !== void 0 ? { knownGitCandidates: discoveredGitCandidates } : {},
       ...onDiscoveryProgress ? { onDiscoveryProgress } : {}
     });
+    if (timings)
+      timings.metadataDiscoveryMs = Math.round(performance5.now() - metadataDiscoveryStart);
     return await buildIndexFromFileListShared(projectRoot, files, opts, {
       manifestMode: useDiskCache ? "read-write" : "off",
       warnNoFilesMessage: `Warning: No files found in project root: ${projectRoot}. Check codegraph.config.json globs and CLI --include-glob/--ignore-glob filters. Diagnostic: codegraph doctor`,
@@ -55794,6 +55826,7 @@ async function buildProjectIndexIncremental(projectRoot, opts) {
   if (strictIncremental && graphOptions.fast)
     graphOptions.fast = false;
   const { normalizedProjectRoot, report, timings, totalStart, cacheMode, cacheEnabled, onFallbackImportExtraction } = createIndexBuildRunState(projectRoot, opts, graphOptions);
+  const discoveryTimings = opts?.report ? opts.report.timings ??= {} : void 0;
   let checkProgressActive = false;
   const startCheckProgress = () => {
     if (checkProgressActive)
@@ -55886,13 +55919,31 @@ async function buildProjectIndexIncremental(projectRoot, opts) {
     const hasExplicitGitRange = !!opts?.gitBase || !!opts?.gitHead;
     const shouldDiffAgainstWorkingTree = !hasExplicitGitRange && gitAvailable && !!manifest.lastCommit;
     const canReuseReconciliation = opts?.reconciledManifestUpdatedAt === manifest.updatedAt;
+    let sourceDiscoveryMs = 0;
+    let sourceDiscoveryPerformed = false;
+    const measureSourceDiscovery = async (operation) => {
+      if (!discoveryTimings || opts?.filesAreProjectScope)
+        return await operation();
+      sourceDiscoveryPerformed = true;
+      const start = performance5.now();
+      try {
+        return await operation();
+      } finally {
+        sourceDiscoveryMs += performance5.now() - start;
+      }
+    };
     let manifestDiffFiles = [];
     if (shouldDiffAgainstWorkingTree) {
       try {
-        manifestDiffFiles = (canReuseReconciliation ? opts?.reconciledWorkingTreeDiffFiles : void 0) ?? await listChangedFiles(projectRoot, {
-          base: manifest.lastCommit,
-          head: "WORKTREE"
-        });
+        const reconciledWorkingTreeDiffFiles = canReuseReconciliation ? opts?.reconciledWorkingTreeDiffFiles : void 0;
+        if (reconciledWorkingTreeDiffFiles !== void 0) {
+          manifestDiffFiles = reconciledWorkingTreeDiffFiles;
+        } else {
+          manifestDiffFiles = await measureSourceDiscovery(() => listChangedFiles(projectRoot, {
+            base: manifest.lastCommit,
+            head: "WORKTREE"
+          }));
+        }
       } catch (error51) {
         if (!isMissingGitRevisionError(error51))
           throw error51;
@@ -55937,13 +55988,21 @@ async function buildProjectIndexIncremental(projectRoot, opts) {
     const previousTransientFiles = sanitizeManifestTransientFilesForRoot(projectRoot, projectRoot, manifest.transientFiles).filter((file2) => Object.hasOwn(trackedEntries, file2));
     const previousTransientFileSet = new Set(previousTransientFiles);
     const needsGitScan = !!opts?.gitBase || !!opts?.changedSince;
-    const gitFiles = needsGitScan ? await listChangedFiles(projectRoot, buildIncrementalGitDiffOptions(opts)) : [];
+    let gitFiles = [];
+    if (needsGitScan) {
+      gitFiles = await measureSourceDiscovery(() => listChangedFiles(projectRoot, buildIncrementalGitDiffOptions(opts)));
+    }
     let untrackedFiles = [];
     let rediscoveredFiles = [];
     let discoveredGitCandidates;
     if (canUseIncrementalDiscoveryFastPath(gitAvailable, opts?.cacheStrict)) {
       try {
-        untrackedFiles = (canReuseReconciliation ? opts?.reconciledUntrackedFiles : void 0) ?? await listUntrackedProjectFiles(projectRoot, opts?.discovery, gitAvailable);
+        const reconciledUntrackedFiles = canReuseReconciliation ? opts?.reconciledUntrackedFiles : void 0;
+        if (reconciledUntrackedFiles !== void 0) {
+          untrackedFiles = reconciledUntrackedFiles;
+        } else {
+          untrackedFiles = await measureSourceDiscovery(() => listUntrackedProjectFiles(projectRoot, opts?.discovery, gitAvailable));
+        }
       } catch (error51) {
         if (manifestReport) {
           manifestReport.reason = "gitUntrackedScanFailed";
@@ -55956,14 +56015,17 @@ async function buildProjectIndexIncremental(projectRoot, opts) {
         });
       }
     } else if (!opts?.filesAreProjectScope) {
-      rediscoveredFiles = await listProjectFilesWithGitCandidates(projectRoot, projectPatternsForLanguageExtensions(opts), {
+      rediscoveredFiles = await measureSourceDiscovery(() => listProjectFilesWithGitCandidates(projectRoot, projectPatternsForLanguageExtensions(opts), {
         ...opts?.discovery,
         ...opts?.logLevel ? { logLevel: opts.logLevel } : {},
         ...!opts?.cacheStrict && manifest.symlinkDirectories !== void 0 ? { knownSymlinkDirectories: manifest.symlinkDirectories } : {},
         onGitCandidatesDiscovered: (candidates) => {
           discoveredGitCandidates = candidates;
         }
-      });
+      }));
+    }
+    if (discoveryTimings && sourceDiscoveryPerformed) {
+      discoveryTimings.sourceDiscoveryMs = Math.round(sourceDiscoveryMs);
     }
     const candidateFiles = [
       ...explicitFiles,
@@ -56062,10 +56124,16 @@ async function buildProjectIndexIncremental(projectRoot, opts) {
       if (!snapshotLoad)
         return null;
       const snapshot = snapshotLoad.index;
-      snapshot.projectFiles ??= await discoverProjectFilesWithGitCandidates(projectRoot, {
-        ...opts?.logLevel ? { logLevel: opts.logLevel } : {},
-        ...discoveredGitCandidates !== void 0 ? { knownGitCandidates: discoveredGitCandidates } : {}
-      });
+      snapshot.manifestSignaturesFresh = false;
+      if (snapshot.projectFiles === void 0) {
+        const metadataDiscoveryStart = performance5.now();
+        snapshot.projectFiles = await discoverProjectFilesWithGitCandidates(projectRoot, {
+          ...opts?.logLevel ? { logLevel: opts.logLevel } : {},
+          ...discoveredGitCandidates !== void 0 ? { knownGitCandidates: discoveredGitCandidates } : {}
+        });
+        if (discoveryTimings)
+          discoveryTimings.metadataDiscoveryMs = Math.round(performance5.now() - metadataDiscoveryStart);
+      }
       if (opts?.cache) {
         snapshot.cacheMode = opts.cache;
         snapshot.cacheRootDir = cacheRoot(projectRoot, opts);
@@ -56350,6 +56418,17 @@ async function buildProjectIndexIncremental(projectRoot, opts) {
           edges: []
         });
       }
+      for (const [file2, entry] of manifestEntries) {
+        const signature = fileSignatures.get(file2);
+        if (!signature)
+          continue;
+        const { gitSig: _previousGitSig, ...entryWithoutGitSig } = entry;
+        manifestEntries.set(file2, {
+          ...entryWithoutGitSig,
+          sig: signature.sig,
+          ...signature.gitSig ? { gitSig: signature.gitSig } : {}
+        });
+      }
       await writeIndexManifestSnapshot({
         projectRoot,
         opts,
@@ -58577,7 +58656,7 @@ async function buildLifecycleManifest(root, buildOptions, existing, options = {}
     configHash: await hashConfig(root, buildOptions?.logLevel),
     buildOptionsHash: hashBuildOptions(buildOptions),
     fileCount: snapshot.files.length,
-    fileSignatureHash: await hashDiscoveredFiles(snapshot.files, root),
+    fileSignatureHash: hashManifestEntries(snapshot.files, root, snapshot.index.manifestEntries, snapshot.index.manifestSignaturesFresh) ?? await hashDiscoveredFiles(snapshot.files, root),
     files: discoveredFileRelativePaths(snapshot.files, root),
     analysis: snapshot.analysis
   };
@@ -58653,6 +58732,56 @@ function isMissingStatRace2(error51) {
     return false;
   return error51.code === "ENOENT" || error51.code === "ENOTDIR";
 }
+function hashManifestEntries(files, root, entries, signaturesFresh) {
+  if (!signaturesFresh || !entries || entries.size !== files.length)
+    return void 0;
+  const sorted = [...files].sort((left, right) => left.localeCompare(right));
+  const signatures = /* @__PURE__ */ new Map();
+  for (const file2 of sorted) {
+    const entry = entries.get(file2);
+    const signature = parseLifecycleFileSignature(entry?.sig);
+    if (!signature)
+      return void 0;
+    signatures.set(file2, signature);
+  }
+  const hash2 = createHash4("sha256");
+  for (const file2 of sorted) {
+    const signature = signatures.get(file2);
+    if (!signature)
+      return void 0;
+    const relative = path51.relative(root, file2).replace(/\\/g, "/");
+    hash2.update(relative);
+    hash2.update("\0");
+    hash2.update(signature.size);
+    hash2.update("\0");
+    hash2.update(signature.mtimeMs);
+    hash2.update("\0");
+  }
+  return hash2.digest("hex");
+}
+function parseLifecycleFileSignature(value) {
+  if (typeof value !== "string")
+    return void 0;
+  if (value === "0:0")
+    return void 0;
+  const parts = value.split(":");
+  if (parts.length !== 2)
+    return void 0;
+  const [mtimeMs, size] = parts;
+  if (!mtimeMs || !size)
+    return void 0;
+  if (!/^-?(?:0|[1-9]\d*)(?:\.\d+)?$/.test(mtimeMs))
+    return void 0;
+  if (!/^(?:0|[1-9]\d*)$/.test(size))
+    return void 0;
+  const numericMtimeMs = Number(mtimeMs);
+  const numericSize = Number(size);
+  if (!Number.isFinite(numericMtimeMs) || String(numericMtimeMs) !== mtimeMs)
+    return void 0;
+  if (!Number.isSafeInteger(numericSize) || String(numericSize) !== size)
+    return void 0;
+  return { size, mtimeMs };
+}
 async function hashDiscoveredFiles(files, root) {
   const sorted = [...files].sort((left, right) => left.localeCompare(right));
   const signatures = /* @__PURE__ */ new Map();
@@ -76469,8 +76598,6 @@ function formatAgentExploreResponse(response) {
   for (const [name, value] of Object.entries(response.limits)) {
     lines.push(`- ${name}: ${value}`);
   }
-  const recommended = formatAgentFollowUpAsCli(response.followUps[0] ?? toolFollowUp("orient", { budget: "small" }));
-  lines.push("", `Recommended next: ${recommended}`);
   return lines.join("\n");
 }
 function packetSummaryLines(packet) {
@@ -77026,9 +77153,9 @@ var init_help = __esm({
 
 Start here:
   Configure every supported agent  codegraph install --all --dry-run
-  Understand a repository          codegraph explore "how does auth reach the database?" --root .
-  Review local changes             codegraph review
+  Map a repository                 codegraph orient --root . --budget small
   Find a symbol or file            codegraph search "SessionManager" --json
+  Review local changes             codegraph review
   Check runtime health             codegraph doctor
 
 Run codegraph --help for all commands.`;
@@ -77036,9 +77163,9 @@ Run codegraph --help for all commands.`;
 
 Start here:
   Configure every supported agent  codegraph install --all --dry-run
-  Understand a repository          codegraph explore "how does auth reach the database?" --root .
-  Review local changes             codegraph review
+  Map a repository                 codegraph orient --root . --budget small
   Find a symbol or file            codegraph search "SessionManager" --json
+  Review local changes             codegraph review
   Check runtime health             codegraph doctor
 
 Usage: codegraph <command> [options] [path]
@@ -84157,7 +84284,7 @@ function buildFocusTargets(modules, packets, review) {
 function buildRecommendedNext(includeRoots, focus, hasGitRepo) {
   const commands = [];
   const firstFocus = focus[0];
-  if (firstFocus) {
+  if (firstFocus?.kind === "review") {
     for (const followUp of firstFocus.followUps) {
       commands.push({
         label: labelForFollowUp(firstFocus, followUp),
@@ -84266,16 +84393,14 @@ function formatAgentOrientation(response) {
     lines.push("", "Start here");
     for (const focus of response.focus) {
       lines.push(`- ${focus.file ?? focus.label}: ${focus.why}`);
-      for (const followUp of focus.followUps) {
-        lines.push(`  - ${formatAgentFollowUpAsCli(followUp)}`);
-      }
+    }
+    if (response.focus.some((focus) => focus.file)) {
+      lines.push("Inspect a listed path: codegraph packet get <path>");
     }
   }
-  const focusFollowUps = new Set(response.focus.flatMap((focus) => focus.followUps.map(formatAgentFollowUpAsCli)));
-  const remainingRecommendations = response.recommendedNext.filter((next) => !focusFollowUps.has(next.command));
-  if (remainingRecommendations.length) {
+  if (response.recommendedNext.length) {
     lines.push("", "Recommended next");
-    for (const next of remainingRecommendations) {
+    for (const next of response.recommendedNext) {
       lines.push(`- ${next.command}`);
     }
   }
@@ -84298,7 +84423,6 @@ var init_orient2 = __esm({
   "dist/cli/orient.js"() {
     "use strict";
     init_orient();
-    init_followUps();
   }
 });
 

package/dist/cli/help.d.ts

@@ -1,5 +1,5 @@
 export { isKnownCliCommand } from "./commandCatalog.js";
-export declare const CLI_TASK_HELP_TEXT = "codegraph - Ask structural questions about a repository\n\nStart here:\n  Configure every supported agent  codegraph install --all --dry-run\n  Understand a repository          codegraph explore \"how does auth reach the database?\" --root .\n  Review local changes             codegraph review\n  Find a symbol or file            codegraph search \"SessionManager\" --json\n  Check runtime health             codegraph doctor\n\nRun codegraph --help for all commands.";
+export declare const CLI_TASK_HELP_TEXT = "codegraph - Ask structural questions about a repository\n\nStart here:\n  Configure every supported agent  codegraph install --all --dry-run\n  Map a repository                 codegraph orient --root . --budget small\n  Find a symbol or file            codegraph search \"SessionManager\" --json\n  Review local changes             codegraph review\n  Check runtime health             codegraph doctor\n\nRun codegraph --help for all commands.";
 export declare const CLI_HELP_TEXT: string;
 export declare const ADVANCED_HELP_TEXT: string;
 export declare const LIFECYCLE_HELP_TEXT = "codegraph init/status/sync/uninit - Initialize, inspect, refresh, or remove project-local Codegraph state\n\nUsage:\n  codegraph init [path] [--force] [--no-update-gitignore] [--json | --pretty]\n  codegraph init --root <path> [--force] [--no-update-gitignore] [--json | --pretty]\n  codegraph status [path] [--json | --pretty]\n  codegraph status --root <path> [--json | --pretty]\n  codegraph sync [path] [--init] [--no-update-gitignore] [--json | --pretty]\n  codegraph sync --root <path> [--init] [--no-update-gitignore] [--json | --pretty]\n  codegraph uninit [path] [--force] [--json | --pretty]\n  codegraph uninit --root <path> [--force] [--json | --pretty]\n\nState:\n  Lifecycle commands own .codegraph/manifest.json metadata; a shared MCP server owns .codegraph/server.json and .codegraph/server.log. In a Git worktree, init and sync --init ensure the .codegraph/ directory is effectively ignored, appending .codegraph/ to the resolved root's .gitignore only when needed; opt out with --no-update-gitignore.\n  A tracked manifest is left tracked with a warning. Uninit preserves server.json, server.log, and cache even with --force, so stop a shared server explicitly; it leaves the root .gitignore rule, and ordinary sync never changes ignore policy.\n  Init and sync may warm or update the disk cache under .codegraph/cache/index-v1/. Existing .codegraph-cache/ directories migrate automatically on the next run. Other commands do not depend on the manifest.\n  Positional paths and --root are alternatives for lifecycle commands; do not combine them.\n";

package/dist/cli/help.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"help.d.ts","sourceRoot":"","sources":["../../src/cli/help.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AAExD,eAAO,MAAM,kBAAkB,ydASQ,CAAC;AAExC,eAAO,MAAM,aAAa,QAkHzB,CAAC;AACF,eAAO,MAAM,kBAAkB,QAI9B,CAAC;AAEF,eAAO,MAAM,mBAAmB,miDAiB/B,CAAC;AAEF,eAAO,MAAM,kBAAkB,ofAU9B,CAAC;AAEF,eAAO,MAAM,iBAAiB,g1BAY7B,CAAC;AAEF,eAAO,MAAM,mBAAmB,kXAM/B,CAAC;AAMF,eAAO,MAAM,iBAAiB,itCAU7B,CAAC;AAEF,eAAO,MAAM,cAAc,wzBAU1B,CAAC;AAEF,eAAO,MAAM,gBAAgB,itDAkB5B,CAAC;AAEF,eAAO,MAAM,cAAc,2qCAQ1B,CAAC;AAEF,eAAO,MAAM,cAAc,usCAS1B,CAAC;AAEF,eAAO,MAAM,cAAc,4yBAO1B,CAAC;AAEF,eAAO,MAAM,aAAa,yNAIzB,CAAC;AAEF,eAAO,MAAM,iBAAiB,y6CAY7B,CAAC;AAEF,eAAO,MAAM,iBAAiB,skCAO7B,CAAC;AAEF,eAAO,MAAM,iBAAiB,skCAO7B,CAAC;AAEF,eAAO,MAAM,oBAAoB,q/BAOhC,CAAC;AAEF,eAAO,MAAM,kBAAkB,++BAO9B,CAAC;AAEF,eAAO,MAAM,yBAAyB,oiCAOrC,CAAC;AAEF,eAAO,MAAM,wBAAwB,qyCASpC,CAAC;AAEF,eAAO,MAAM,uBAAuB,+4CASnC,CAAC;AAEF,eAAO,MAAM,gBAAgB,i2CAS5B,CAAC;AAEF,eAAO,MAAM,gBAAgB,y8CAgB5B,CAAC;AAEF,eAAO,MAAM,iBAAiB,g/CAW7B,CAAC;AAEF,eAAO,MAAM,kBAAkB,+3CAgB9B,CAAC;AAEF,eAAO,MAAM,gBAAgB,2jDAkB5B,CAAC;AAEF,eAAO,MAAM,aAAa,g2CAwBzB,CAAC;AAEF,eAAO,MAAM,mBAAmB,i4EAwC/B,CAAC;AAEF,eAAO,MAAM,oBAAoB,k8FAwChC,CAAC;AAEF,eAAO,MAAM,eAAe,qrCAe3B,CAAC;AAEF,eAAO,MAAM,gBAAgB,qgCAc5B,CAAC;AAEF,eAAO,MAAM,eAAe,2jCAQ3B,CAAC;AAEF,eAAO,MAAM,eAAe,mmCAQ3B,CAAC;AAEF,eAAO,MAAM,gBAAgB,qnDAiB5B,CAAC;AAEF,eAAO,MAAM,gBAAgB,o9BAQ5B,CAAC;AAEF,eAAO,MAAM,iBAAiB,o2BAK7B,CAAC;AAEF,eAAO,MAAM,cAAc,wmCAS1B,CAAC;AAEF,eAAO,MAAM,eAAe,0nCAS3B,CAAC;AAEF,eAAO,MAAM,cAAc,u0BAK1B,CAAC;AAEF,eAAO,MAAM,gBAAgB,s0BAK5B,CAAC;AAEF,eAAO,MAAM,kBAAkB,6zBAK9B,CAAC;AAEF,eAAO,MAAM,oBAAoB,4zBAKhC,CAAC;AAEF,eAAO,MAAM,eAAe,2mBAY3B,CAAC;AAEF,eAAO,MAAM,oBAAoB,2zBAKhC,CAAC;AAEF,eAAO,MAAM,qBAAqB,y2BAKjC,CAAC;AAEF,eAAO,MAAM,gBAAgB,wPAM5B,CAAC;AAEF,eAAO,MAAM,eAAe,+KAG3B,CAAC;AAEF,eAAO,MAAM,eAAe,4UAM3B,CAAC;AAEF,eAAO,MAAM,iBAAiB,syBAK7B,CAAC;AAEF,eAAO,MAAM,iBAAiB,gHAG7B,CAAC;AAEF,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,SAAS,MAAM,EAAE,GAAG,MAAM,GAAG,SAAS,CAoDtG"}
+{"version":3,"file":"help.d.ts","sourceRoot":"","sources":["../../src/cli/help.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AAExD,eAAO,MAAM,kBAAkB,icASQ,CAAC;AAExC,eAAO,MAAM,aAAa,QAkHzB,CAAC;AACF,eAAO,MAAM,kBAAkB,QAI9B,CAAC;AAEF,eAAO,MAAM,mBAAmB,miDAiB/B,CAAC;AAEF,eAAO,MAAM,kBAAkB,ofAU9B,CAAC;AAEF,eAAO,MAAM,iBAAiB,g1BAY7B,CAAC;AAEF,eAAO,MAAM,mBAAmB,kXAM/B,CAAC;AAMF,eAAO,MAAM,iBAAiB,itCAU7B,CAAC;AAEF,eAAO,MAAM,cAAc,wzBAU1B,CAAC;AAEF,eAAO,MAAM,gBAAgB,itDAkB5B,CAAC;AAEF,eAAO,MAAM,cAAc,2qCAQ1B,CAAC;AAEF,eAAO,MAAM,cAAc,usCAS1B,CAAC;AAEF,eAAO,MAAM,cAAc,4yBAO1B,CAAC;AAEF,eAAO,MAAM,aAAa,yNAIzB,CAAC;AAEF,eAAO,MAAM,iBAAiB,y6CAY7B,CAAC;AAEF,eAAO,MAAM,iBAAiB,skCAO7B,CAAC;AAEF,eAAO,MAAM,iBAAiB,skCAO7B,CAAC;AAEF,eAAO,MAAM,oBAAoB,q/BAOhC,CAAC;AAEF,eAAO,MAAM,kBAAkB,++BAO9B,CAAC;AAEF,eAAO,MAAM,yBAAyB,oiCAOrC,CAAC;AAEF,eAAO,MAAM,wBAAwB,qyCASpC,CAAC;AAEF,eAAO,MAAM,uBAAuB,+4CASnC,CAAC;AAEF,eAAO,MAAM,gBAAgB,i2CAS5B,CAAC;AAEF,eAAO,MAAM,gBAAgB,y8CAgB5B,CAAC;AAEF,eAAO,MAAM,iBAAiB,g/CAW7B,CAAC;AAEF,eAAO,MAAM,kBAAkB,+3CAgB9B,CAAC;AAEF,eAAO,MAAM,gBAAgB,2jDAkB5B,CAAC;AAEF,eAAO,MAAM,aAAa,g2CAwBzB,CAAC;AAEF,eAAO,MAAM,mBAAmB,i4EAwC/B,CAAC;AAEF,eAAO,MAAM,oBAAoB,k8FAwChC,CAAC;AAEF,eAAO,MAAM,eAAe,qrCAe3B,CAAC;AAEF,eAAO,MAAM,gBAAgB,qgCAc5B,CAAC;AAEF,eAAO,MAAM,eAAe,2jCAQ3B,CAAC;AAEF,eAAO,MAAM,eAAe,mmCAQ3B,CAAC;AAEF,eAAO,MAAM,gBAAgB,qnDAiB5B,CAAC;AAEF,eAAO,MAAM,gBAAgB,o9BAQ5B,CAAC;AAEF,eAAO,MAAM,iBAAiB,o2BAK7B,CAAC;AAEF,eAAO,MAAM,cAAc,wmCAS1B,CAAC;AAEF,eAAO,MAAM,eAAe,0nCAS3B,CAAC;AAEF,eAAO,MAAM,cAAc,u0BAK1B,CAAC;AAEF,eAAO,MAAM,gBAAgB,s0BAK5B,CAAC;AAEF,eAAO,MAAM,kBAAkB,6zBAK9B,CAAC;AAEF,eAAO,MAAM,oBAAoB,4zBAKhC,CAAC;AAEF,eAAO,MAAM,eAAe,2mBAY3B,CAAC;AAEF,eAAO,MAAM,oBAAoB,2zBAKhC,CAAC;AAEF,eAAO,MAAM,qBAAqB,y2BAKjC,CAAC;AAEF,eAAO,MAAM,gBAAgB,wPAM5B,CAAC;AAEF,eAAO,MAAM,eAAe,+KAG3B,CAAC;AAEF,eAAO,MAAM,eAAe,4UAM3B,CAAC;AAEF,eAAO,MAAM,iBAAiB,syBAK7B,CAAC;AAEF,eAAO,MAAM,iBAAiB,gHAG7B,CAAC;AAEF,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,SAAS,MAAM,EAAE,GAAG,MAAM,GAAG,SAAS,CAoDtG"}

package/dist/cli/help.js

@@ -4,9 +4,9 @@ export const CLI_TASK_HELP_TEXT = `codegraph - Ask structural questions about a
 
 Start here:
   Configure every supported agent  codegraph install --all --dry-run
-  Understand a repository          codegraph explore "how does auth reach the database?" --root .
-  Review local changes             codegraph review
+  Map a repository                 codegraph orient --root . --budget small
   Find a symbol or file            codegraph search "SessionManager" --json
+  Review local changes             codegraph review
   Check runtime health             codegraph doctor
 
 Run codegraph --help for all commands.`;
@@ -14,9 +14,9 @@ export const CLI_HELP_TEXT = `codegraph - Code analysis and dependency graph too
 
 Start here:
   Configure every supported agent  codegraph install --all --dry-run
-  Understand a repository          codegraph explore "how does auth reach the database?" --root .
-  Review local changes             codegraph review
+  Map a repository                 codegraph orient --root . --budget small
   Find a symbol or file            codegraph search "SessionManager" --json
+  Review local changes             codegraph review
   Check runtime health             codegraph doctor
 
 Usage: codegraph <command> [options] [path]

package/dist/cli/orient.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"orient.d.ts","sourceRoot":"","sources":["../../src/cli/orient.ts"],"names":[],"mappings":"AAAA,OAAO,EAIL,KAAK,mBAAmB,EACzB,MAAM,oBAAoB,CAAC;AAG5B,OAAO,KAAK,EAAE,sBAAsB,EAAE,MAAM,cAAc,CAAC;AAE3D,MAAM,MAAM,oBAAoB,GAAG,sBAAsB,CAAC;AAkB1D,wBAAsB,mBAAmB,CAAC,OAAO,EAAE,oBAAoB,GAAG,OAAO,CAAC,IAAI,CAAC,CAiBtF;AAED,wBAAgB,sBAAsB,CAAC,QAAQ,EAAE,mBAAmB,GAAG,MAAM,CAoC5E"}
+{"version":3,"file":"orient.d.ts","sourceRoot":"","sources":["../../src/cli/orient.ts"],"names":[],"mappings":"AAAA,OAAO,EAIL,KAAK,mBAAmB,EACzB,MAAM,oBAAoB,CAAC;AAG5B,OAAO,KAAK,EAAE,sBAAsB,EAAE,MAAM,cAAc,CAAC;AAE3D,MAAM,MAAM,oBAAoB,GAAG,sBAAsB,CAAC;AAkB1D,wBAAsB,mBAAmB,CAAC,OAAO,EAAE,oBAAoB,GAAG,OAAO,CAAC,IAAI,CAAC,CAiBtF;AAED,wBAAgB,sBAAsB,CAAC,QAAQ,EAAE,mBAAmB,GAAG,MAAM,CAkC5E"}

package/dist/cli/orient.js

@@ -1,5 +1,4 @@
 import { orientCodegraph, } from "../agent/orient.js";
-import { formatAgentFollowUpAsCli } from "../agent/followUps.js";
 function parseAgentOrientBudget(rawValue) {
     if (rawValue === undefined)
         return "small";
@@ -40,16 +39,14 @@ export function formatAgentOrientation(response) {
         lines.push("", "Start here");
         for (const focus of response.focus) {
             lines.push(`- ${focus.file ?? focus.label}: ${focus.why}`);
-            for (const followUp of focus.followUps) {
-                lines.push(`  - ${formatAgentFollowUpAsCli(followUp)}`);
-            }
+        }
+        if (response.focus.some((focus) => focus.file)) {
+            lines.push("Inspect a listed path: codegraph packet get <path>");
         }
     }
-    const focusFollowUps = new Set(response.focus.flatMap((focus) => focus.followUps.map(formatAgentFollowUpAsCli)));
-    const remainingRecommendations = response.recommendedNext.filter((next) => !focusFollowUps.has(next.command));
-    if (remainingRecommendations.length) {
+    if (response.recommendedNext.length) {
         lines.push("", "Recommended next");
-        for (const next of remainingRecommendations) {
+        for (const next of response.recommendedNext) {
             lines.push(`- ${next.command}`);
         }
     }

package/dist/cli/orient.js.map

@@ -1 +1 @@
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package/dist/indexer/build-index.d.ts.map

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