npm - @lzehrung/codegraph - Versions diffs - 2.3.19 → 2.3.21 - Mend

@lzehrung/codegraph 2.3.19 → 2.3.21

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (57) hide show

package/codegraph-skill/codegraph/SKILL.md +2 -1
package/dist/agent/session.d.ts +2 -2
package/dist/agent/session.d.ts.map +1 -1
package/dist/agent/session.js +13 -9
package/dist/agent/session.js.map +1 -1
package/dist/bin/cli.js +36849 -37670
package/dist/bin/queryIndexWorker.js +28 -5
package/dist/cli/index.d.ts.map +1 -1
package/dist/cli/index.js +12 -5
package/dist/cli/index.js.map +1 -1
package/dist/cli/invocationContext.d.ts.map +1 -1
package/dist/cli/invocationContext.js +94 -31
package/dist/cli/invocationContext.js.map +1 -1
package/dist/config.d.ts +1 -1
package/dist/config.d.ts.map +1 -1
package/dist/config.js +0 -1
package/dist/config.js.map +1 -1
package/dist/indexer/build-cache/manifest.d.ts +2 -2
package/dist/indexer/build-cache/manifest.d.ts.map +1 -1
package/dist/indexer/build-cache/manifest.js +8 -33
package/dist/indexer/build-cache/manifest.js.map +1 -1
package/dist/indexer/build-index.d.ts.map +1 -1
package/dist/indexer/build-index.js +134 -56
package/dist/indexer/build-index.js.map +1 -1
package/dist/indexer/build-manifest.d.ts +8 -0
package/dist/indexer/build-manifest.d.ts.map +1 -1
package/dist/indexer/build-manifest.js +20 -2
package/dist/indexer/build-manifest.js.map +1 -1
package/dist/indexer/finalize.d.ts +2 -1
package/dist/indexer/finalize.d.ts.map +1 -1
package/dist/indexer/finalize.js +14 -6
package/dist/indexer/finalize.js.map +1 -1
package/dist/indexer/incremental-plan.d.ts +3 -2
package/dist/indexer/incremental-plan.d.ts.map +1 -1
package/dist/indexer/incremental-plan.js +8 -4
package/dist/indexer/incremental-plan.js.map +1 -1
package/dist/indexer/types.d.ts +12 -2
package/dist/indexer/types.d.ts.map +1 -1
package/dist/lifecycle/manifest.d.ts.map +1 -1
package/dist/lifecycle/manifest.js +82 -13
package/dist/lifecycle/manifest.js.map +1 -1
package/dist/util/git.d.ts +13 -10
package/dist/util/git.d.ts.map +1 -1
package/dist/util/git.js +29 -25
package/dist/util/git.js.map +1 -1
package/dist/util/paths.d.ts +2 -2
package/dist/util/paths.d.ts.map +1 -1
package/dist/util/paths.js +27 -7
package/dist/util/paths.js.map +1 -1
package/dist/util/projectFiles/definitions.d.ts +19 -0
package/dist/util/projectFiles/definitions.d.ts.map +1 -1
package/dist/util/projectFiles/definitions.js.map +1 -1
package/dist/util/projectFiles.d.ts +80 -22
package/dist/util/projectFiles.d.ts.map +1 -1
package/dist/util/projectFiles.js +319 -38
package/dist/util/projectFiles.js.map +1 -1
package/package.json +3 -3

package/dist/indexer/incremental-plan.js CHANGED Viewed

@@ -135,11 +135,15 @@ export function collectTrackedFileDependents(trackedEntries, changedFiles, rever
  * project-file ignores (`node_modules`, `.git`, build output, ...) still apply via
  * `createDiscoveredFileMatcher()` below regardless of this setting.
  */
-export async function listUntrackedProjectFiles(projectRoot, discovery, gitAvailable) {
+export async function listUntrackedProjectFiles(projectRoot, discovery, gitAvailable, discoveryCache) {
     if (!gitAvailable)
         return [];
     const respectGitignore = discovery?.useGitignore !== false;
-    const candidates = await listUntrackedFiles(projectRoot, { gitAvailable, respectGitignore });
+    const candidates = await listUntrackedFiles(projectRoot, {
+        gitAvailable,
+        respectGitignore,
+        ...(discoveryCache ? { discoveryCache } : {}),
+    });
     if (!candidates.length)
         return [];
     const globRoot = discovery?.globRoot ?? projectRoot;
@@ -161,7 +165,7 @@ export async function listUntrackedProjectFiles(projectRoot, discovery, gitAvail
 export function canUseIncrementalDiscoveryFastPath(gitAvailable, cacheStrict) {
     return gitAvailable && !cacheStrict;
 }
-export async function resolveIncrementalFilePlan(projectRoot, opts) {
+export async function resolveIncrementalFilePlan(projectRoot, opts, discoveryCache) {
     const manifest = await loadManifest(projectRoot, opts);
     if (!manifest)
         return null;
@@ -183,7 +187,7 @@ export async function resolveIncrementalFilePlan(projectRoot, opts) {
         // too when clean), so this replaces the narrower commit-to-commit comparison.
         const [workingTreeDiffFiles, untrackedFiles] = await Promise.all([
             manifest.lastCommit ? listChangedFiles(projectRoot, { base: manifest.lastCommit, head: "WORKTREE" }) : [],
-            listUntrackedProjectFiles(projectRoot, opts?.discovery, true),
+            listUntrackedProjectFiles(projectRoot, opts?.discovery, true, discoveryCache),
         ]);
         const candidatePaths = [...workingTreeDiffFiles, ...untrackedFiles];
         const existence = candidatePaths.length ? await probePathExistence(candidatePaths) : new Map();

package/dist/indexer/incremental-plan.js.map CHANGED Viewed

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1	+ {"version":3,"file":"incremental-plan.js","sourceRoot":"","sources":["../../src/indexer/incremental-plan.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,SAAS,CAAC;AACzB,OAAO,GAAG,MAAM,kBAAkB,CAAC;AACnC,OAAO,EACL,gBAAgB,EAChB,YAAY,EACZ,8BAA8B,GAE/B,MAAM,kBAAkB,CAAC;AAE1B,OAAO,EAAE,gBAAgB,EAAE,kBAAkB,EAA0B,MAAM,gBAAgB,CAAC;AAC9F,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AACjD,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAClD,OAAO,EACL,2BAA2B,EAC3B,wBAAwB,EACxB,yBAAyB,GAE1B,MAAM,yBAAyB,CAAC;AAcjC,mFAAmF;AACnF,MAAM,CAAC,MAAM,6BAA6B,GAAG,EAAE,CAAC;AAEhD,MAAM,CAAC,KAAK,UAAU,UAAU,CAAC,QAAgB;IAC/C,IAAI,CAAC;QACH,MAAM,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;QAC3B,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,KAAwB,EACxB,cAAsB,6BAA6B;IAEnD,MAAM,WAAW,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC;IAC/C,MAAM,OAAO,GAAG,MAAM,QAAQ,CAAC,WAAW,EAAE,WAAW,EAAE,KAAK,EAAE,QAAQ,EAAE,EAAE;QAC1E,OAAO,CAAC,QAAQ,EAAE,MAAM,UAAU,CAAC,QAAQ,CAAC,CAAU,CAAC;IACzD,CAAC,CAAC,CAAC;IACH,OAAO,IAAI,GAAG,CAAC,OAAO,CAAC,CAAC;AAC1B,CAAC;AAED,MAAM,UAAU,yBAAyB,CAAC,KAAc;IACtD,MAAM,OAAO,GAAG,YAAY,CAAC,KAAK,CAAC,CAAC;IACpC,OAAO,CACL,OAAO,CAAC,QAAQ,CAAC,wBAAwB,CAAC;QAC1C,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAC;QAChC,qFAAqF;QACrF,8EAA8E;QAC9E,8EAA8E;QAC9E,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAC;QAC9B,OAAO,CAAC,QAAQ,CAAC,kBAAkB,CAAC;QACpC,OAAO,CAAC,QAAQ,CAAC,oBAAoB,CAAC,CACvC,CAAC;AACJ,CAAC;AAED,MAAM,UAAU,8BAA8B,CAAC,IAAyC;IACtF,MAAM,OAAO,GAA8B,EAAE,CAAC;IAC9C,IAAI,IAAI,EAAE,OAAO;QAAE,OAAO,CAAC,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC;IAC/C,IAAI,IAAI,EAAE,OAAO;QAAE,OAAO,CAAC,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC;IAC/C,IAAI,CAAC,IAAI,EAAE,OAAO,IAAI,IAAI,EAAE,YAAY;QAAE,OAAO,CAAC,YAAY,GAAG,IAAI,CAAC,YAAY,CAAC;IACnF,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,6BAA6B,CACjD,cAAiD,EACjD,cAAsB,6BAA6B;IAEnD,MAAM,eAAe,GAAG,MAAM,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;IACpD,MAAM,SAAS,GAAG,MAAM,kBAAkB,CAAC,eAAe,EAAE,WAAW,CAAC,CAAC;IACzE,MAAM,YAAY,GAAG,IAAI,GAAG,EAAU,CAAC;IACvC,MAAM,mBAAmB,GAAG,IAAI,GAAG,EAAU,CAAC;IAC9C,KAAK,MAAM,IAAI,IAAI,eAAe,EAAE,CAAC;QACnC,IAAI,SAAS,CAAC,GAAG,CAAC,IAAI,CAAC;YAAE,YAAY,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;;YAC3C,mBAAmB,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IACrC,CAAC;IACD,OAAO;QACL,eAAe;QACf,YAAY;QACZ,mBAAmB;KACpB,CAAC;AACJ,CAAC;AAED,MAAM,UAAU,mCAAmC,CACjD,cAAiD,EACjD,mBAAwC;IAExC,MAAM,UAAU,GAAG,IAAI,GAAG,EAAU,CAAC;IACrC,IAAI,CAAC,mBAAmB,CAAC,IAAI;QAAE,OAAO,UAAU,CAAC;IACjD,MAAM,eAAe,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,mBAAmB,EAAE,eAAe,CAAC,CAAC,CAAC;IAClF,KAAK,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,cAAc,CAAC,EAAE,CAAC;QAC3D,IAAI,eAAe,CAAC,GAAG,CAAC,eAAe,CAAC,IAAI,CAAC,CAAC;YAAE,SAAS;QACzD,IAAI,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,MAAM,IAAI,eAAe,CAAC,GAAG,CAAC,eAAe,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;YAC9G,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QACvB,CAAC;IACH,CAAC;IACD,OAAO,UAAU,CAAC;AACpB,CAAC;AAED,MAAM,UAAU,mCAAmC,CACjD,cAAiD;IAEjD,MAAM,WAAW,GAAG,IAAI,GAAG,EAAuB,CAAC;IACnD,KAAK,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,cAAc,CAAC,EAAE,CAAC;QAC3D,KAAK,MAAM,IAAI,IAAI,KAAK,CAAC,KAAK,EAAE,CAAC;YAC/B,IAAI,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,MAAM;gBAAE,SAAS;YACtC,MAAM,eAAe,GAAG,eAAe,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC;YACtD,IAAI,MAAM,GAAG,WAAW,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC;YAC9C,IAAI,CAAC,MAAM,EAAE,CAAC;gBACZ,MAAM,GAAG,IAAI,GAAG,EAAU,CAAC;gBAC3B,WAAW,CAAC,GAAG,CAAC,eAAe,EAAE,MAAM,CAAC,CAAC;YAC3C,CAAC;YACD,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QACnB,CAAC;IACH,CAAC;IACD,OAAO,WAAW,CAAC;AACrB,CAAC;AAED,MAAM,UAAU,4BAA4B,CAC1C,cAAiD,EACjD,YAAiC,EACjC,WAAW,GAAG,mCAAmC,CAAC,cAAc,CAAC;IAEjE,MAAM,UAAU,GAAG,IAAI,GAAG,EAAU,CAAC;IACrC,IAAI,CAAC,YAAY,CAAC,IAAI;QAAE,OAAO,UAAU,CAAC;IAE1C,MAAM,QAAQ,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,EAAE,eAAe,CAAC,CAAC,CAAC;IACpE,MAAM,KAAK,GAAG,CAAC,GAAG,QAAQ,CAAC,CAAC;IAC5B,IAAI,IAAI,GAAG,CAAC,CAAC;IACb,OAAO,IAAI,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC;QAC3B,MAAM,SAAS,GAAG,KAAK,CAAC,IAAI,CAAE,CAAC;QAC/B,IAAI,IAAI,CAAC,CAAC;QACV,KAAK,MAAM,SAAS,IAAI,WAAW,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,EAAE,EAAE,CAAC;YACzD,MAAM,YAAY,GAAG,eAAe,CAAC,SAAS,CAAC,CAAC;YAChD,IAAI,QAAQ,CAAC,GAAG,CAAC,YAAY,CAAC;gBAAE,SAAS;YACzC,QAAQ,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;YAC3B,UAAU,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;YAC1B,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;QAC3B,CAAC;IACH,CAAC;IAED,OAAO,UAAU,CAAC;AACpB,CAAC;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,MAAM,CAAC,KAAK,UAAU,yBAAyB,CAC7C,WAAmB,EACnB,SAAkD,EAClD,YAAqB,EACrB,cAAkC;IAElC,IAAI,CAAC,YAAY;QAAE,OAAO,EAAE,CAAC;IAC7B,MAAM,gBAAgB,GAAG,SAAS,EAAE,YAAY,KAAK,KAAK,CAAC;IAC3D,MAAM,UAAU,GAAG,MAAM,kBAAkB,CAAC,WAAW,EAAE;QACvD,YAAY;QACZ,gBAAgB;QAChB,GAAG,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,cAAc,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;KAC9C,CAAC,CAAC;IACH,IAAI,CAAC,UAAU,CAAC,MAAM;QAAE,OAAO,EAAE,CAAC;IAClC,MAAM,QAAQ,GAAG,SAAS,EAAE,QAAQ,IAAI,WAAW,CAAC;IACpD,MAAM,gBAAgB,GAAG,2BAA2B,CAAC,WAAW,EAAE,QAAQ,EAAE,wBAAwB,EAAE,SAAS,CAAC,CAAC;IACjH,MAAM,kBAAkB,GAAG,UAAU,CAAC,MAAM,CAAC,gBAAgB,CAAC,CAAC;IAC/D,I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package/dist/indexer/types.d.ts CHANGED Viewed

@@ -7,7 +7,7 @@ import type { ScopeIndex } from "./scope-types.js";
 import type { ReferenceCandidateIndex } from "./reference-candidate-types.js";
 import type { ParsedFileContext } from "./parse-context.js";
 import type { Edge, FileId, Graph, ProgressUpdate, Range } from "../types.js";
-import type { ProjectFileDiscoveryOptions, ProjectFileInfo } from "../util/projectFiles.js";
+import type { ProjectDiscoveryContext, ProjectFileDiscoveryOptions, ProjectFileInfo } from "../util/projectFiles.js";
 import type { ImportBinding } from "./import-types.js";
 export type { ImportBinding } from "./import-types.js";
 export declare enum SymbolKind {
@@ -192,6 +192,8 @@ export type IncrementalBuildOptions = BuildOptions & {
     additionalFiles?: string[];
     /** @internal Treat `files` as the current project scope, not as caller-selected changed files. */
     filesAreProjectScope?: boolean;
+    /** @internal Share facts with file planning in the same operation; never retain across calls. */
+    discoveryContext?: ProjectDiscoveryContext;
     /** @internal Manifest identity associated with precomputed reconciliation. */
     reconciledManifestUpdatedAt?: number;
     /** @internal Reuse working-tree reconciliation already performed for `files`. */
@@ -225,7 +227,15 @@ export type BuildTimingReport = {
     parseMs?: number;
     graphMs?: number;
     writeManifestMs?: number;
-    /** Named step durations for diagnosis. Coarse fields above remain the stable summary. */
+    /**
+     * Named step durations for diagnosis. Coarse fields above remain the stable summary.
+     * Manifest writes keep `index-manifest` as the overall total and also emit `git-head`,
+     * `config-hash`, `manifest-transform`, `manifest-write`, and `cache-prune`.
+     * Incremental preambles emit `file-identity`, `clear-resolution-caches`, `load-manifest`,
+     * and `diff-build-options` so work before a delegated rebuild is attributable.
+     * Metadata discovery emits `metadata-discovery` when finalize has to discover project
+     * files itself; that step is recorded beside, not inside, `finalize`.
+     */
     steps?: BuildTimingStep[];
 };
 export type BuildFileReport = {

package/dist/indexer/types.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/lifecycle/manifest.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/lifecycle/manifest.js CHANGED Viewed

@@ -2,9 +2,10 @@ import { createHash, randomUUID } from "node:crypto";
 import fsp from "node:fs/promises";
 import path from "node:path";
 import { createAgentSession, listAgentSessionFiles } from "../agent/session.js";
-import { computeConfigHash } from "../indexer/build-cache/manifest.js";
+import { computeConfigHash, loadManifest } from "../indexer/build-cache/manifest.js";
 import { logWithLevel } from "../logging.js";
 import { mapLimit } from "../util/concurrency.js";
+import { createProjectDiscoveryContext } from "../util/projectFiles.js";
 import { normalizeGraphOptions, summarizeBuildOptions } from "../indexer/build-cache/options.js";
 import { CodegraphLifecycleUserError } from "./errors.js";
 import { prepareCodegraphLifecycleGitignore } from "./gitignore.js";
@@ -25,6 +26,7 @@ export function codegraphLifecycleManifestPath(root) {
     return path.join(root, CODEGRAPH_DIR, MANIFEST_FILE);
 }
 export async function initCodegraphLifecycle(root, options = {}) {
+    emitLifecyclePostBuildProgress(options.buildOptions, "Updating Git ignore policy");
     const gitignore = await prepareCodegraphLifecycleGitignore(root, {
         updateGitignore: options.updateGitignore ?? true,
     });
@@ -46,11 +48,13 @@ export async function initCodegraphLifecycle(root, options = {}) {
     return await syncCodegraphLifecycleCore(root, { ...options, init: true }, existing, gitignore);
 }
 export async function syncCodegraphLifecycle(root, options = {}) {
-    const gitignore = options.init
-        ? await prepareCodegraphLifecycleGitignore(root, {
+    let gitignore;
+    if (options.init) {
+        emitLifecyclePostBuildProgress(options.buildOptions, "Updating Git ignore policy");
+        gitignore = await prepareCodegraphLifecycleGitignore(root, {
             updateGitignore: options.updateGitignore ?? true,
-        })
-        : undefined;
+        });
+    }
     const existing = await readLifecycleManifest(root, { allowInvalid: Boolean(options.init && options.force) });
     return await syncCodegraphLifecycleCore(root, options, existing, gitignore);
 }
@@ -59,6 +63,7 @@ async function syncCodegraphLifecycleCore(root, options, existing, gitignore) {
         throw new CodegraphLifecycleUserError("Codegraph is not initialized for this project. Run codegraph init or codegraph sync --init.");
     }
     const manifest = await buildLifecycleManifest(root, options.buildOptions, existing, options.force ? { force: true } : {});
+    emitLifecyclePostBuildProgress(options.buildOptions, "Writing lifecycle manifest");
     await writeLifecycleManifest(root, manifest);
     const thenCount = existing?.fileCount ?? 0;
     const fallbackTotalDelta = manifest.fileCount - thenCount;
@@ -87,12 +92,15 @@ export async function getCodegraphLifecycleStatus(root, options = {}) {
             suggestedNextCommand: "codegraph init",
         };
     }
-    const configHash = await hashConfig(root, options.buildOptions?.logLevel);
+    // Status must recompute the current config hash and compare it to the value stored at
+    // last sync. Reusing a persisted hash here would make configChanged permanently false.
+    const discoveryContext = createProjectDiscoveryContext(root);
+    const configHash = await hashConfig(root, options.buildOptions?.logLevel, discoveryContext);
     const buildOptionsHash = hashBuildOptions(options.buildOptions);
     const files = await listAgentSessionFiles({
         root,
         ...(options.buildOptions ? { buildOptions: options.buildOptions } : {}),
-    });
+    }, discoveryContext);
     const fileSignatureHash = await hashDiscoveredFiles(files, root);
     const configChanged = manifest.configHash !== configHash;
     const buildOptionsChanged = manifest.buildOptionsHash !== buildOptionsHash;
@@ -146,22 +154,36 @@ export async function uninitCodegraphLifecycle(root, options = {}) {
 }
 async function buildLifecycleManifest(root, buildOptions, existing, options = {}) {
     const now = new Date().toISOString();
-    const sessionBuildOptions = { ...(buildOptions ?? {}), cache: "disk" };
+    const sessionBuildOptions = {
+        ...withIndexTeardownProgress(buildOptions),
+        cache: "disk",
+    };
     const forcedSessionBuildOptions = options.force
         ? { ...sessionBuildOptions, cacheStrict: true, cacheVerify: true }
         : sessionBuildOptions;
     const session = createAgentSession({ root, buildOptions: forcedSessionBuildOptions });
     const snapshot = await session.loadProject({ symbolGraph: "skip" });
+    // Reuse the hash the index build just persisted. It describes this same tree in this
+    // same process; recomputing would reopen a window where config could change between
+    // the build and the lifecycle record.
+    const configHash = await resolveLifecycleConfigHash(root, sessionBuildOptions, buildOptions);
+    emitLifecyclePostBuildProgress(buildOptions, "Hashing file signatures");
+    let fileSignatureHash = hashManifestEntries(snapshot.files, root, snapshot.index.manifestEntries, snapshot.index.manifestSignaturesFresh);
+    if (!fileSignatureHash) {
+        emitLifecyclePostBuildProgress(buildOptions, "Hashing discovered files");
+        fileSignatureHash = await hashDiscoveredFiles(snapshot.files, root);
+    }
+    const files = discoveredFileRelativePaths(snapshot.files, root);
     return {
         schemaVersion: MANIFEST_SCHEMA_VERSION,
         root: ".",
         createdAt: existing?.createdAt ?? now,
         lastSyncAt: now,
-        configHash: await hashConfig(root, buildOptions?.logLevel),
+        configHash,
         buildOptionsHash: hashBuildOptions(buildOptions),
         fileCount: snapshot.files.length,
-        fileSignatureHash: hashManifestEntries(snapshot.files, root, snapshot.index.manifestEntries, snapshot.index.manifestSignaturesFresh) ?? (await hashDiscoveredFiles(snapshot.files, root)),
-        files: discoveredFileRelativePaths(snapshot.files, root),
+        fileSignatureHash,
+        files,
         analysis: snapshot.analysis,
     };
 }
@@ -208,8 +230,55 @@ async function writeLifecycleManifest(root, manifest) {
         throw new CodegraphLifecycleUserError(`Unable to write Codegraph lifecycle manifest at ${manifestPath}: ${stringifyError(error)}`);
     }
 }
-async function hashConfig(root, logLevel) {
-    const result = await computeConfigHash(root, logLevel);
+function emitLifecyclePostBuildProgress(buildOptions, activity) {
+    // Mirror emitIndexCheckStart: a named check phase with no count, so the CLI
+    // spinner/log identifies remaining work instead of sitting silent after Built.
+    buildOptions?.onProgress?.({
+        type: "progress",
+        phase: "start",
+        mode: "check",
+        message: activity,
+        activity,
+        current: 0,
+        total: 0,
+    });
+}
+function withIndexTeardownProgress(buildOptions) {
+    const onProgress = buildOptions?.onProgress;
+    if (!onProgress)
+        return { ...(buildOptions ?? {}) };
+    // Index complete prints "Built project index", then the build's finally still runs
+    // worker teardown and closeDiskCacheDatabase (WAL checkpoint) with no activity name.
+    // Start a new check phase on that complete event so the stall identifies itself.
+    return {
+        ...buildOptions,
+        onProgress: (update) => {
+            onProgress(update);
+            if (update.phase !== "complete")
+                return;
+            const indexFinished = update.mode === "build" ||
+                update.mode === "update" ||
+                (update.mode === "check" && update.message === "Checked project index");
+            if (!indexFinished)
+                return;
+            emitLifecyclePostBuildProgress(buildOptions, "Closing disk cache");
+        },
+    };
+}
+async function resolveLifecycleConfigHash(root, sessionBuildOptions, buildOptions) {
+    emitLifecyclePostBuildProgress(buildOptions, "Reading index config hash");
+    const indexManifest = await loadManifest(root, sessionBuildOptions);
+    const storedHash = indexManifest?.configHash;
+    if (storedHash)
+        return storedHash;
+    // Index manifest missing or has no configHash (older cache, persist skipped, or
+    // empty hash from a failed enumeration). Fall back so init/sync never write a
+    // weaker lifecycle hash than they do today.
+    emitLifecyclePostBuildProgress(buildOptions, "Hashing project config");
+    return await hashConfig(root, buildOptions?.logLevel);
+}
+async function hashConfig(root, logLevel, discoveryContext) {
+    const result = await computeConfigHash(root, logLevel, discoveryContext);
     if (result.error) {
         logWithLevel(logLevel, "warn", `Warning: Codegraph lifecycle config drift check: ${result.error}`);
     }

package/dist/lifecycle/manifest.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/util/git.d.ts CHANGED Viewed

@@ -10,6 +10,14 @@ type GitExcludeFile = {
     baseDir: string;
     priority: number;
 };
+/** Git facts shared only by callers in the same discovery operation. */
+export type GitDiscoveryCache = {
+    repositories: Map<string, Promise<boolean>>;
+    ignoredRoots: Map<string, Promise<boolean>>;
+    excludeFiles: Map<string, Promise<GitExcludeFile[]>>;
+    untrackedFiles: Map<string, Promise<string[]>>;
+};
+export declare function createGitDiscoveryCache(): GitDiscoveryCache;
 /** Decodes Git's optional C-style quoted pathname representation without trimming legal path bytes. */
 export declare function decodeGitPath(rawPath: string): string;
 /**
@@ -28,10 +36,6 @@ export type RunGitOptions = {
         pid?: number;
     }) => void) | undefined;
 };
-/** Test-only: drop memoized Git repository checks. */
-export declare function clearGitRepositoryCheckCacheForTests(): void;
-/** Test-only: drop memoized Git discovery facts. */
-export declare function clearGitDiscoveryCacheForTests(): void;
 /**
  * Central bounded Git execution: timeout + optional AbortSignal, always kills the child.
  * Preserves stderr/stdout in rejection messages for diagnosis.
@@ -45,15 +49,12 @@ export declare function isGitIndexSentinel(value: string): boolean;
 export declare function assertSafeRevision(value: string, label: string): string;
 export declare function gitDiffArgs(base: string, head: string, extraArgs?: string[]): string[];
 export declare function getGitHead(projectRoot: string): Promise<string | null>;
-export declare function isGitRepo(projectRoot: string): Promise<boolean>;
+export declare function isGitRepo(projectRoot: string, cache?: GitDiscoveryCache): Promise<boolean>;
 export declare function getGitRepositoryRoot(projectRoot: string): Promise<string | null>;
 export declare function isGitPathTracked(projectRoot: string, file: string): Promise<boolean>;
 export declare function isGitPathIgnored(projectRoot: string, file: string): Promise<boolean>;
-/**
- * Whether Git ignores the requested project root. This value is static for a root during
- * process lifetime and lets repeated discovery avoid spawning `git check-ignore`.
- */
-export declare function isGitProjectRootIgnored(projectRoot: string): Promise<boolean>;
+/** Whether Git ignores the requested root in this discovery operation. */
+export declare function isGitProjectRootIgnored(projectRoot: string, cache?: GitDiscoveryCache): Promise<boolean>;
 export declare function getGitBlobHashes(projectRoot: string, files: string[], opts?: {
     gitAvailable?: boolean;
     logLevel?: LogLevel;
@@ -137,6 +138,7 @@ export declare function listGitSubmoduleDirectories(projectRoot: string, opts?:
  */
 export declare function listGitExcludeFiles(projectRoot: string, opts?: {
     gitAvailable?: boolean;
+    discoveryCache?: GitDiscoveryCache;
 }): Promise<GitExcludeFile[]>;
 /**
  * List files in the working tree that Git does not track (new, uncommitted files).
@@ -152,6 +154,7 @@ export declare function listGitExcludeFiles(projectRoot: string, opts?: {
 export declare function listUntrackedFiles(projectRoot: string, opts?: {
     gitAvailable?: boolean;
     respectGitignore?: boolean;
+    discoveryCache?: GitDiscoveryCache;
 }): Promise<string[]>;
 /**
  * Get unified diff text from Git.

package/dist/util/git.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/util/git.js CHANGED Viewed

@@ -12,9 +12,14 @@ import { logWithLevel } from "../logging.js";
  * hung credential helper cannot pin an MCP request indefinitely.
  */
 export const DEFAULT_GIT_TIMEOUT_MS = 30_000;
-const gitRepositoryChecks = new Map();
-const gitDiscoveryRootIgnoredChecks = new Map();
-const gitExcludeFileChecks = new Map();
+export function createGitDiscoveryCache() {
+    return {
+        repositories: new Map(),
+        ignoredRoots: new Map(),
+        excludeFiles: new Map(),
+        untrackedFiles: new Map(),
+    };
+}
 const MAX_GIT_HASH_OBJECT_ARGUMENT_BYTES = 24 * 1024;
 let gitExecutableForTests = null;
 let gitExecutablePrefixArgsForTests = [];
@@ -75,15 +80,6 @@ export function setGitExecutableForTests(executable, prefixArgs = []) {
     gitExecutableForTests = executable;
     gitExecutablePrefixArgsForTests = executable ? [...prefixArgs] : [];
 }
-/** Test-only: drop memoized Git repository checks. */
-export function clearGitRepositoryCheckCacheForTests() {
-    gitRepositoryChecks.clear();
-}
-/** Test-only: drop memoized Git discovery facts. */
-export function clearGitDiscoveryCacheForTests() {
-    gitDiscoveryRootIgnoredChecks.clear();
-    gitExcludeFileChecks.clear();
-}
 function resolveGitTimeoutMs(timeoutMs) {
     if (typeof timeoutMs === "number" && Number.isFinite(timeoutMs) && timeoutMs > 0) {
         return Math.floor(timeoutMs);
@@ -315,9 +311,9 @@ export async function getGitHead(projectRoot) {
         return null;
     }
 }
-export async function isGitRepo(projectRoot) {
+export async function isGitRepo(projectRoot, cache) {
     const resolvedRoot = path.resolve(projectRoot);
-    const cached = gitRepositoryChecks.get(resolvedRoot);
+    const cached = cache?.repositories.get(resolvedRoot);
     if (cached)
         return await cached;
     const check = (async () => {
@@ -329,7 +325,7 @@ export async function isGitRepo(projectRoot) {
             return false;
         }
     })();
-    gitRepositoryChecks.set(resolvedRoot, check);
+    cache?.repositories.set(resolvedRoot, check);
     return await check;
 }
 export async function getGitRepositoryRoot(projectRoot) {
@@ -348,17 +344,14 @@ export async function isGitPathTracked(projectRoot, file) {
 export async function isGitPathIgnored(projectRoot, file) {
     return await runGitPathPredicate(projectRoot, ["check-ignore", "--quiet", "--no-index", "--", normalizePath(file)]);
 }
-/**
- * Whether Git ignores the requested project root. This value is static for a root during
- * process lifetime and lets repeated discovery avoid spawning `git check-ignore`.
- */
-export async function isGitProjectRootIgnored(projectRoot) {
+/** Whether Git ignores the requested root in this discovery operation. */
+export async function isGitProjectRootIgnored(projectRoot, cache) {
     const resolvedRoot = path.resolve(projectRoot);
-    const cached = gitDiscoveryRootIgnoredChecks.get(resolvedRoot);
+    const cached = cache?.ignoredRoots.get(resolvedRoot);
     if (cached)
         return await cached;
     const check = isGitPathIgnored(resolvedRoot, resolvedRoot);
-    gitDiscoveryRootIgnoredChecks.set(resolvedRoot, check);
+    cache?.ignoredRoots.set(resolvedRoot, check);
     return await check;
 }
 async function runGitPathPredicate(projectRoot, args) {
@@ -668,11 +661,11 @@ export async function listGitExcludeFiles(projectRoot, opts) {
     if (!(opts?.gitAvailable ?? true))
         return [];
     const resolvedRoot = path.resolve(projectRoot);
-    const cached = gitExcludeFileChecks.get(resolvedRoot);
+    const cached = opts?.discoveryCache?.excludeFiles.get(resolvedRoot);
     if (cached)
         return await cached;
     const check = listGitExcludeFilesUncached(resolvedRoot);
-    gitExcludeFileChecks.set(resolvedRoot, check);
+    opts?.discoveryCache?.excludeFiles.set(resolvedRoot, check);
     return await check;
 }
 async function listGitExcludeFilesUncached(projectRoot) {
@@ -742,8 +735,19 @@ export async function listUntrackedFiles(projectRoot, opts) {
     const gitAvailable = opts?.gitAvailable ?? true;
     if (!gitAvailable)
         return [];
+    const respectGitignore = opts?.respectGitignore ?? true;
+    const cache = opts?.discoveryCache?.untrackedFiles;
+    const cacheKey = `${path.resolve(projectRoot)}\0${respectGitignore ? 1 : 0}`;
+    const cached = cache?.get(cacheKey);
+    if (cached)
+        return cached;
+    const listing = listUntrackedFilesUncached(projectRoot, respectGitignore);
+    cache?.set(cacheKey, listing);
+    return listing;
+}
+async function listUntrackedFilesUncached(projectRoot, respectGitignore) {
     const args = ["ls-files", "--others", "-z"];
-    if (opts?.respectGitignore ?? true)
+    if (respectGitignore)
         args.push("--exclude-standard");
     try {
         const stdout = await runGitCollectStdout(projectRoot, args);