@lzehrung/codegraph 2.1.1 → 2.1.2

package/dist/impact/streaming.js.map

@@ -1 +1 @@
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package/dist/impact/transitive.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"transitive.d.ts","sourceRoot":"","sources":["../../src/impact/transitive.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,aAAa,CAAC;AAChD,OAAO,EAAE,KAAK,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAGxD,OAAO,KAAK,EAAE,UAAU,EAAE,UAAU,EAAE,aAAa,EAAgB,MAAM,YAAY,CAAC;AAItF,KAAK,aAAa,GAAG,CAAC,IAAI,EAAE,UAAU,EAAE,KAAK,EAAE,SAAS,GAAG,OAAO,KAAK,IAAI,CAAC;AAW5E,wBAAgB,uBAAuB,CACrC,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,EACjC,YAAY,EAAE,UAAU,EAAE,EAC1B,OAAO,EAAE,OAAO,CAAC,aAAa,CAAC,GAAG;IAAE,WAAW,CAAC,EAAE,MAAM,CAAA;CAAE,EAC1D,WAAW,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,EACjC,cAAc,CAAC,EAAE,aAAa,GAC7B,IAAI,CAiGN;AAED,wBAAgB,uBAAuB,CACrC,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,EACjC,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,OAAO,CAAC,aAAa,CAAC,GAAG;IAAE,WAAW,CAAC,EAAE,MAAM,CAAA;CAAE,EAC1D,eAAe,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,EAC1C,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,EAChC,cAAc,CAAC,EAAE,aAAa,GAC7B,IAAI,CAwFN"}
+{"version":3,"file":"transitive.d.ts","sourceRoot":"","sources":["../../src/impact/transitive.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,aAAa,CAAC;AAChD,OAAO,EAAE,KAAK,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAGxD,OAAO,KAAK,EAAE,UAAU,EAAE,UAAU,EAAE,aAAa,EAAgB,MAAM,YAAY,CAAC;AAItF,KAAK,aAAa,GAAG,CAAC,IAAI,EAAE,UAAU,EAAE,KAAK,EAAE,SAAS,GAAG,OAAO,KAAK,IAAI,CAAC;AAW5E,wBAAgB,uBAAuB,CACrC,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,EACjC,YAAY,EAAE,UAAU,EAAE,EAC1B,OAAO,EAAE,OAAO,CAAC,aAAa,CAAC,GAAG;IAAE,WAAW,CAAC,EAAE,MAAM,CAAA;CAAE,EAC1D,WAAW,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,EACjC,cAAc,CAAC,EAAE,aAAa,GAC7B,IAAI,CAiGN;AAED,wBAAgB,uBAAuB,CACrC,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,EACjC,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,OAAO,CAAC,aAAa,CAAC,GAAG;IAAE,WAAW,CAAC,EAAE,MAAM,CAAA;CAAE,EAC1D,eAAe,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,EAC1C,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,EAChC,cAAc,CAAC,EAAE,aAAa,GAC7B,IAAI,CA+FN"}

package/dist/impact/transitive.js

@@ -137,7 +137,7 @@ export function analyzeTransitiveImpact(impacted, maxDepth, options, isIndexTest
             if (addsReason) {
                 reasons.push(reason);
             }
-            const severity = calculateTransitiveSeverity(edge, nextDepth);
+            const severity = calculateTransitiveSeverity(edge, nextDepth, options.severityWeights);
             const upstreamConfidence = impacted.get(file)?.confidence ?? 0.6;
             const nextConfidence = Math.max(0.2, Math.min(1, upstreamConfidence * (edge.typeOnly ? 0.75 : 0.85) * Math.pow(0.95, depth)));
             const existingSeverity = existing?.severity ?? 0;
@@ -164,10 +164,18 @@ export function analyzeTransitiveImpact(impacted, maxDepth, options, isIndexTest
                 },
                 confidence: Math.max(existingConfidence, nextConfidence),
             };
-            if (edge.typeOnly !== undefined) {
-                transitiveItem.typeOnly = edge.typeOnly;
+            const edgeIsTypeOnly = edge.typeOnly ?? false;
+            let evidenceIsTypeOnly;
+            if (existing?.typeOnly !== undefined) {
+                evidenceIsTypeOnly = existing.typeOnly && edgeIsTypeOnly;
+            }
+            else if (edge.typeOnly !== undefined) {
+                evidenceIsTypeOnly = edgeIsTypeOnly;
+            }
+            if (evidenceIsTypeOnly !== undefined) {
+                transitiveItem.typeOnly = evidenceIsTypeOnly;
                 if (transitiveItem.explain) {
-                    transitiveItem.explain.typeOnly = edge.typeOnly;
+                    transitiveItem.explain.typeOnly = evidenceIsTypeOnly;
                 }
             }
             impacted.set(dependentFile, transitiveItem);
@@ -179,7 +187,7 @@ export function analyzeTransitiveImpact(impacted, maxDepth, options, isIndexTest
                 queue.push({
                     file: dependentFile,
                     depth: nextDepth,
-                    reason: "exportChain",
+                    reason: "transitive",
                 });
             }
         }

package/dist/impact/transitive.js.map

@@ -1 +1 @@
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+{"version":3,"file":"transitive.js","sourceRoot":"","sources":["../../src/impact/transitive.ts"],"names":[],"mappings":"AACA,OAAO,EAAqB,MAAM,qBAAqB,CAAC;AACxD,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,EAAE,mBAAmB,EAAE,0BAA0B,EAAE,MAAM,mBAAmB,CAAC;AAEpF,OAAO,EAAE,yBAAyB,EAAE,MAAM,WAAW,CAAC;AACtD,OAAO,EAAE,2BAA2B,EAAE,0BAA0B,EAAE,MAAM,eAAe,CAAC;AAIxF,SAAS,iBAAiB,CAAC,KAAmB,EAAE,QAAgB,EAAE,WAAiC;IACjG,IAAI,WAAW,EAAE,CAAC;QAChB,OAAO,WAAW,CAAC,GAAG,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC;IACpF,CAAC;IACD,OAAO,KAAK,CAAC,KAAK,CAAC,KAAK;SACrB,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,MAAM,IAAI,eAAe,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,eAAe,CAAC,QAAQ,CAAC,CAAC;SACxG,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC9B,CAAC;AAED,MAAM,UAAU,uBAAuB,CACrC,KAAmB,EACnB,QAAiC,EACjC,YAA0B,EAC1B,OAA0D,EAC1D,WAAiC,EACjC,cAA8B;IAE9B,MAAM,EAAE,YAAY,GAAG,KAAK,EAAE,YAAY,EAAE,WAAW,GAAG,EAAE,EAAE,GAAG,OAAO,CAAC;IACzE,MAAM,WAAW,GACf,OAAO,CAAC,WAAW,IAAI,KAAK,CAAC,WAAW,IAAI,KAAK,CAAC,YAAY,EAAE,IAAI,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,WAAW,CAAC,EAAE,WAAW,CAAC;IAClH,MAAM,eAAe,GAAG,mBAAmB,CAAC,YAAY,CAAC,CAAC;IAC1D,MAAM,eAAe,GAAG,0BAA0B,CAAC,KAAK,EAAE,eAAe,EAAE,WAAW,CAAC,CAAC;IACxF,MAAM,eAAe,GAAG,IAAI,GAAG,CAAC,OAAO,CAAC,sBAAsB,IAAI,EAAE,CAAC,CAAC;IACtE,MAAM,WAAW,GAAG,OAAO,CAAC,WAAW,CAAC;IACxC,MAAM,SAAS,GAAG,WAAW,CAAC,CAAC,CAAC,yBAAyB,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC;IAElG,KAAK,MAAM,UAAU,IAAI,YAAY,EAAE,CAAC;QACtC,IAAI,SAAS,CAAC,UAAU,CAAC,IAAI,CAAC;YAAE,SAAS;QAEzC,MAAM,iBAAiB,GAAG,UAAU,CAAC,IAAI,KAAK,OAAO,IAAI,UAAU,CAAC,IAAI,KAAK,UAAU,CAAC;QACxF,MAAM,2BAA2B,GAC/B,iBAAiB;YACjB,OAAO,CAAC,iBAAiB;YACzB,CAAC,eAAe,CAAC,GAAG,CAAC,UAAU,CAAC,IAAI,CAAC;gBACnC,UAAU,CAAC,QAAQ;gBACnB,UAAU,CAAC,WAAW;gBACtB,CAAC,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QAE9B,IAAI,2BAA2B,EAAE,CAAC;YAChC,IAAI,QAAQ,CAAC,GAAG,CAAC,UAAU,CAAC,IAAI,CAAC;gBAAE,SAAS;YAC5C,MAAM,UAAU,GAAG,iBAAiB,CAAC,KAAK,EAAE,UAAU,CAAC,IAAI,EAAE,WAAW,CAAC,CAAC;YAC1E,IAAI,UAAU,CAAC,MAAM,EAAE,CAAC;gBACtB,IAAI,WAAW;oBAAE,WAAW,CAAC,mBAAmB,IAAI,CAAC,CAAC;YACxD,CAAC;YAED,KAAK,MAAM,SAAS,IAAI,UAAU,EAAE,CAAC;gBACnC,IAAI,CAAC,YAAY,IAAI,eAAe,CAAC,SAAS,CAAC;oBAAE,SAAS;gBAC1D,IAAI,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,SAAS,CAAC,SAAS,CAAC;oBAAE,SAAS;gBAE9D,QAAQ,CAAC,GAAG,CAAC,SAAS,EAAE;oBACtB,IAAI,EAAE,SAAS;oBACf,OAAO,EAAE,EAAE;oBACX,OAAO,EAAE,CAAC,iBAAiB,CAAC;oBAC5B,QAAQ,EAAE,IAAI;oBACd,KAAK,EAAE,CAAC;oBACR,OAAO,EAAE;wBACP,MAAM,EAAE,iBAAiB;wBACzB,KAAK,EAAE,CAAC;wBACR,KAAK,EAAE,CAAC,sBAAsB,CAAC;qBAChC;oBACD,UAAU,EAAE,GAAG;iBAChB,CAAC,CAAC;gBACH,cAAc,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAE,EAAE,SAAS,CAAC,CAAC;gBACtD,IAAI,WAAW;oBAAE,WAAW,CAAC,wBAAwB,IAAI,CAAC,CAAC;YAC7D,CAAC;YACD,SAAS;QACX,CAAC;QAED,uFAAuF;QACvF,4FAA4F;QAC5F,IAAI,UAAU,CAAC,IAAI,KAAK,SAAS,IAAI,UAAU,CAAC,IAAI,KAAK,SAAS;YAAE,SAAS;QAE7E,MAAM,WAAW,GACf,UAAU,CAAC,IAAI,KAAK,SAAS,IAAI,UAAU,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;QAClH,MAAM,YAAY,GAAG,IAAI,GAAG,EAAU,CAAC;QACvC,KAAK,MAAM,UAAU,IAAI,WAAW,EAAE,CAAC;YACrC,KAAK,MAAM,SAAS,IAAI,iBAAiB,CAAC,KAAK,EAAE,UAAU,EAAE,WAAW,CAAC,EAAE,CAAC;gBAC1E,YAAY,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;YAC9B,CAAC;QACH,CAAC;QACD,MAAM,UAAU,GAAG,CAAC,GAAG,YAAY,CAAC,CAAC;QACrC,IAAI,UAAU,CAAC,MAAM,EAAE,CAAC;YACtB,IAAI,WAAW;gBAAE,WAAW,CAAC,mBAAmB,IAAI,CAAC,CAAC;QACxD,CAAC;QAED,KAAK,MAAM,SAAS,IAAI,UAAU,EAAE,CAAC;YACnC,IAAI,CAAC,YAAY,IAAI,eAAe,CAAC,SAAS,CAAC;gBAAE,SAAS;YAC1D,IAAI,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,SAAS,CAAC,SAAS,CAAC;gBAAE,SAAS;YAE9D,MAAM,KAAK,GAAG,CAAC,aAAa,CAAC,CAAC;YAC9B,IAAI,UAAU,CAAC,IAAI,KAAK,SAAS,EAAE,CAAC;gBAClC,KAAK,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAC5B,CAAC;YAED,MAAM,UAAU,GAAe;gBAC7B,IAAI,EAAE,SAAS;gBACf,OAAO,EAAE,EAAE;gBACX,OAAO,EAAE,CAAC,YAAY,CAAC;gBACvB,QAAQ,EAAE,GAAG;gBACb,KAAK,EAAE,CAAC;gBACR,OAAO,EAAE;oBACP,MAAM,EAAE,YAAY;oBACpB,KAAK,EAAE,CAAC;oBACR,KAAK;iBACN;gBACD,UAAU,EAAE,GAAG;aAChB,CAAC;YAEF,QAAQ,CAAC,GAAG,CAAC,SAAS,EAAE,UAAU,CAAC,CAAC;YACpC,cAAc,EAAE,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;YACxC,IAAI,WAAW;gBAAE,WAAW,CAAC,wBAAwB,IAAI,CAAC,CAAC;QAC7D,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,UAAU,uBAAuB,CACrC,QAAiC,EACjC,QAAgB,EAChB,OAA0D,EAC1D,eAA0C,EAC1C,WAAgC,EAChC,cAA8B;IAE9B,MAAM,EAAE,WAAW,GAAG,EAAE,EAAE,GAAG,OAAO,CAAC;IACrC,MAAM,SAAS,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC,CAAC,yBAAyB,CAAC,OAAO,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC;IAElH,MAAM,SAAS,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC5C,MAAM,KAAK,GAAiE,EAAE,CAAC;IAE/E,KAAK,MAAM,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,QAAQ,EAAE,CAAC;QACpC,IAAI,SAAS,CAAC,IAAI,CAAC;YAAE,SAAS;QAC9B,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,IAAI,CAAC,CAAC;QAClC,SAAS,CAAC,GAAG,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC;QAC/B,KAAK,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,YAAY,EAAE,CAAC,CAAC;IAC/D,CAAC;IAED,IAAI,EAAE,GAAG,CAAC,CAAC;IACX,OAAO,EAAE,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC;QACzB,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,KAAK,CAAC,EAAE,EAAE,CAAE,CAAC;QAC7C,IAAI,KAAK,IAAI,QAAQ;YAAE,SA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package/dist/impact/types.d.ts

@@ -322,6 +322,13 @@ export type ImpactReport = {
             to: number;
             label: string;
         }>;
+        truncated?: boolean;
+        limits?: {
+            edges: number;
+        };
+        omittedCounts?: {
+            edges: number;
+        };
     };
     diagnostics?: ImpactDiagnostics;
     markdownLinks?: MarkdownLinkCheckResult;
@@ -438,6 +445,13 @@ export type CompactImpactReport = {
             to: number;
             label: string;
         }>;
+        truncated?: boolean;
+        limits?: {
+            edges: number;
+        };
+        omittedCounts?: {
+            edges: number;
+        };
     };
     diagnostics?: ImpactDiagnostics;
     markdownLinks?: MarkdownLinkCheckResult;

package/dist/impact/types.d.ts.map

@@ -1 +1 @@
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package/dist/impact/types.js.map

@@ -1 +1 @@
-{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/impact/types.ts"],"names":[],"mappings":"AAGA,OAAO,EAAqC,MAAM,qBAAqB,CAAC;AACxE,OAAO,EAAwB,MAAM,yBAAyB,CAAC;AA4T/D,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,CAAC;AAoLvC,+BAA+B;AAC/B,MAAM,CAAC,MAAM,wBAAwB,GAAoB;IACvD,QAAQ,EAAE,GAAG;IACb,QAAQ,EAAE,GAAG;IACb,QAAQ,EAAE,GAAG;IACb,UAAU,EAAE,GAAG;IACf,SAAS,EAAE,GAAG;IACd,eAAe,EAAE,GAAG;IACpB,WAAW,EAAE,GAAG;IAChB,UAAU,EAAE,GAAG;IACf,0BAA0B,EAAE,IAAI;IAChC,uBAAuB,EAAE,GAAG;CAC7B,CAAC"}
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/impact/types.ts"],"names":[],"mappings":"AAGA,OAAO,EAAqC,MAAM,qBAAqB,CAAC;AACxE,OAAO,EAAwB,MAAM,yBAAyB,CAAC;AA4T/D,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,CAAC;AA0LvC,+BAA+B;AAC/B,MAAM,CAAC,MAAM,wBAAwB,GAAoB;IACvD,QAAQ,EAAE,GAAG;IACb,QAAQ,EAAE,GAAG;IACb,QAAQ,EAAE,GAAG;IACb,UAAU,EAAE,GAAG;IACf,SAAS,EAAE,GAAG;IACd,eAAe,EAAE,GAAG;IACpB,WAAW,EAAE,GAAG;IAChB,UAAU,EAAE,GAAG;IACf,0BAA0B,EAAE,IAAI;IAChC,uBAAuB,EAAE,GAAG;CAC7B,CAAC"}

package/dist/indexer/build-cache/manifest.d.ts

@@ -2,7 +2,7 @@ import type { GraphCacheEntry, GraphBuildOptions } from "../../graphs/types.js";
 import { type LogLevel } from "../../logging.js";
 import type { Edge } from "../../types.js";
 import { type ProjectFileDiscoveryOptions } from "../../util/projectFiles.js";
-import type { BuildOptions } from "../types.js";
+import type { BuildOptions, BuildReport } from "../types.js";
 import type { ManifestBuildOptions } from "./options.js";
 export declare function collectWorkspaceManifestDependencyEdges(projectRoot: string, manifestFiles?: readonly string[], discovery?: ProjectFileDiscoveryOptions, logLevel?: LogLevel): Promise<Edge[]>;
 export declare const MANIFEST_VERSION = 5;
@@ -34,17 +34,19 @@ export type IndexManifest = {
      * second full-tree walk entirely.
      */
     symlinkDirectories?: string[];
+    symlinkDirectoriesRootMtimeMs?: number;
 };
 export declare function transformManifestEntries(projectRoot: string, files: Record<string, ManifestFileEntry>, toRelative: boolean): Record<string, ManifestFileEntry>;
 type ConfigHashResult = {
     hash: string;
     error?: string;
 };
-export declare function normalizeIndexedFileInputs(projectRoot: string, files: readonly string[], label: string): string[];
+export declare function normalizeIndexedFileInputs(projectRoot: string, files: readonly string[], label: string, realProjectRoot?: string): string[];
+export declare function normalizeIndexedFileInputsWithinRoot(projectRoot: string, files: readonly string[], label: string): Promise<string[]>;
 export declare function sanitizeManifestEntriesForRoot(projectRoot: string, files: Record<string, ManifestFileEntry> | undefined): Record<string, ManifestFileEntry>;
 export declare function sanitizeManifestTransientFilesForRoot(projectRoot: string, storedProjectRoot: string, files: unknown): string[];
 export declare function computeConfigHash(projectRoot: string, logLevel?: LogLevel): Promise<ConfigHashResult>;
-export declare function loadManifest(projectRoot: string, opts?: BuildOptions): Promise<IndexManifest | null>;
+export declare function loadManifest(projectRoot: string, opts?: BuildOptions, report?: BuildReport): Promise<IndexManifest | null>;
 export declare function writeManifest(projectRoot: string, opts: BuildOptions | undefined, manifest: IndexManifest): Promise<boolean>;
 export declare function verifyManifestEntries(projectRoot: string, manifest: IndexManifest, opts: BuildOptions | undefined, gitAvailable: boolean): Promise<{
     mismatches: number;

package/dist/indexer/build-cache/manifest.d.ts.map

@@ -1 +1 @@
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package/dist/indexer/build-cache/manifest.js

@@ -1,12 +1,13 @@
 import crypto from "node:crypto";
 import fs from "node:fs";
-import fsp from "node:fs/promises";
+import fsp, {} from "node:fs/promises";
 import path from "node:path";
 import fg from "fast-glob";
 import { CODEGRAPH_CONFIG_FILE } from "../../config.js";
 import { logWithLevel } from "../../logging.js";
 import { DEFAULT_PROJECT_FILE_IGNORES, DEFAULT_PROJECT_MANIFESTS, listProjectFiles, } from "../../util/projectFiles.js";
-import { assertFilePathWithinRoot, fileIdentityKey, isFilePathWithinRoot } from "../../util/paths.js";
+import { assertFilePathWithinRoot, fileIdentityKey, isFilePathWithinRoot, normalizePath, toProjectRelativePath, } from "../../util/paths.js";
+import { assertRealPathCandidateWithinRoot } from "../../util/confinedFile.js";
 import { getGitBlobHashes } from "../../util/git.js";
 import { stringifyUnknown } from "../../util/ast.js";
 import { cacheAbsolutePath, cacheRelativePath, fileSignature } from "./module-cache.js";
@@ -86,16 +87,40 @@ export function transformManifestEntries(projectRoot, files, toRelative) {
     }
     return transformed;
 }
-export function normalizeIndexedFileInputs(projectRoot, files, label) {
+export function normalizeIndexedFileInputs(projectRoot, files, label, realProjectRoot) {
     const filesByIdentity = new Map();
     for (const input of files) {
         if (!input)
             continue;
-        const file = assertFilePathWithinRoot(projectRoot, input, label);
-        filesByIdentity.set(fileIdentityKey(file), file);
+        let inputRoot = projectRoot;
+        if (!isFilePathWithinRoot(projectRoot, input) && realProjectRoot && isFilePathWithinRoot(realProjectRoot, input)) {
+            inputRoot = realProjectRoot;
+        }
+        const file = assertFilePathWithinRoot(inputRoot, input, label);
+        const relativeFile = toProjectRelativePath(projectRoot, file) ??
+            (realProjectRoot ? toProjectRelativePath(realProjectRoot, file) : null);
+        let canonicalFile = file;
+        if (relativeFile !== null) {
+            canonicalFile = normalizePath(path.resolve(projectRoot, relativeFile));
+        }
+        filesByIdentity.set(fileIdentityKey(canonicalFile), canonicalFile);
     }
     return [...filesByIdentity.values()];
 }
+export async function normalizeIndexedFileInputsWithinRoot(projectRoot, files, label) {
+    const realRoot = await fsp.realpath(projectRoot);
+    const normalized = normalizeIndexedFileInputs(projectRoot, files, label, realRoot);
+    await Promise.all(normalized.map(async (file) => {
+        try {
+            await assertRealPathCandidateWithinRoot(realRoot, file, label);
+        }
+        catch (error) {
+            if (!(error instanceof Error && "code" in error && error.code === "ENOENT"))
+                throw error;
+        }
+    }));
+    return normalized;
+}
 export function sanitizeManifestEntriesForRoot(projectRoot, files) {
     const sanitizedEntries = {};
     for (const [file, entry] of Object.entries(files ?? {})) {
@@ -190,6 +215,67 @@ function manifestTempFilePath(manifestPath) {
     const base = path.basename(manifestPath);
     return path.join(dir, `.${base}.${process.pid}.${crypto.randomUUID()}.tmp`);
 }
+const MANIFEST_TEMP_RETENTION_MS = 24 * 60 * 60 * 1_000;
+function isManifestTempName(name, manifestName) {
+    const prefix = `.${manifestName}.`;
+    if (!name.startsWith(prefix) || !name.endsWith(".tmp"))
+        return false;
+    const marker = name.slice(prefix.length, -4);
+    return /^\d+\.[0-9a-f-]{36}$/u.test(marker);
+}
+async function cleanupStaleManifestTemps(manifestPath) {
+    let entries;
+    try {
+        entries = await fsp.readdir(path.dirname(manifestPath), { withFileTypes: true });
+    }
+    catch {
+        return;
+    }
+    const cutoff = Date.now() - MANIFEST_TEMP_RETENTION_MS;
+    const manifestName = path.basename(manifestPath);
+    for (const entry of entries) {
+        if (!entry.isFile() || !isManifestTempName(entry.name, manifestName))
+            continue;
+        const candidate = path.join(path.dirname(manifestPath), entry.name);
+        try {
+            const stat = await fsp.lstat(candidate);
+            if (stat.mtimeMs <= cutoff)
+                await fsp.rm(candidate, { force: true });
+        }
+        catch {
+            // Best-effort cleanup.
+        }
+    }
+}
+async function fsyncManifestFile(filePath) {
+    const handle = await fsp.open(filePath, "r+");
+    try {
+        await handle.sync();
+    }
+    finally {
+        await handle.close();
+    }
+}
+async function syncManifestDirectory(directoryPath) {
+    let directory;
+    try {
+        directory = await fsp.open(directoryPath, "r");
+        await directory.sync();
+    }
+    catch {
+        // Directory fsync is not supported on every platform.
+    }
+    finally {
+        if (directory) {
+            try {
+                await directory.close();
+            }
+            catch {
+                // Directory fsync is best effort.
+            }
+        }
+    }
+}
 async function wait(ms) {
     await new Promise((resolve) => {
         setTimeout(resolve, ms);
@@ -197,11 +283,14 @@ async function wait(ms) {
 }
 async function writeManifestAtomically(manifestPath, payload) {
     const retryDelays = [10, 25, 50, 100];
+    await cleanupStaleManifestTemps(manifestPath);
     for (let attempt = 0; attempt <= retryDelays.length; attempt += 1) {
         const tempPath = manifestTempFilePath(manifestPath);
         try {
             await fsp.writeFile(tempPath, payload, "utf8");
+            await fsyncManifestFile(tempPath);
             await fsp.rename(tempPath, manifestPath);
+            await syncManifestDirectory(path.dirname(manifestPath));
             return;
         }
         catch (error) {
@@ -218,14 +307,33 @@ async function writeManifestAtomically(manifestPath, payload) {
         }
     }
 }
-export async function loadManifest(projectRoot, opts) {
+function recordManifestCorruption(report, artifact, reason, logLevel) {
+    if (report) {
+        report.manifest ??= { used: true, reused: false };
+        report.manifest.corruptions ??= [];
+        if (!report.manifest.corruptions.some((entry) => entry.artifact === artifact)) {
+            report.manifest.corruptions.push({ artifact, reason });
+        }
+    }
+    logWithLevel(logLevel, "warn", `Warning: Corrupt cache artifact ${artifact}: ${reason}`);
+}
+export async function loadManifest(projectRoot, opts, report) {
+    const manifestPath = manifestFilePath(projectRoot, opts);
     try {
-        const manifestPath = manifestFilePath(projectRoot, opts);
         const raw = await fsp.readFile(manifestPath, "utf8");
         const parsed = JSON.parse(raw);
-        if ((parsed.version !== MANIFEST_VERSION && parsed.version !== 4 && parsed.version !== 3) ||
-            typeof parsed.projectRoot !== "string" ||
-            !/^[a-f0-9]{64}$/.test(parsed.buildOptions?.implementationFingerprint ?? "")) {
+        let invalidReason;
+        if (parsed.version !== MANIFEST_VERSION && parsed.version !== 4 && parsed.version !== 3) {
+            invalidReason = `unsupported manifest version ${String(parsed.version)}`;
+        }
+        else if (typeof parsed.projectRoot !== "string") {
+            invalidReason = "missing project root";
+        }
+        else if (!/^[a-f0-9]{64}$/.test(parsed.buildOptions?.implementationFingerprint ?? "")) {
+            invalidReason = "missing implementation fingerprint";
+        }
+        if (invalidReason) {
+            recordManifestCorruption(report, manifestPath, invalidReason, opts?.logLevel);
             return null;
         }
         const oldFiles = parsed.files ?? {};
@@ -234,10 +342,6 @@ export async function loadManifest(projectRoot, opts) {
         const migrated = {
             ...parsed,
             version: MANIFEST_VERSION,
-            // Entries, edges, transientFiles, and symlinkDirectories above are already rebased to the
-            // active `projectRoot`. Update the stored provenance to match, or `cachedFileEdgesProjectRoot`
-            // (build-index.ts) keeps pointing at the pre-move root and `collectEdgesForFile`
-            // (graph-edge-collector.ts) rejects every cached edge, forcing a full reparse after a move.
             projectRoot: path.resolve(projectRoot).replace(/\\/g, "/"),
             files: transformManifestEntries(projectRoot, relativeFiles, false),
             transientFiles: sanitizeManifestTransientFilesForRoot(projectRoot, parsed.projectRoot, parsed.transientFiles),
@@ -245,7 +349,10 @@ export async function loadManifest(projectRoot, opts) {
         };
         return migrated;
     }
-    catch {
+    catch (error) {
+        const isMissing = error && typeof error === "object" && "code" in error && error.code === "ENOENT";
+        if (!isMissing)
+            recordManifestCorruption(report, manifestPath, stringifyUnknown(error), opts?.logLevel);
         return null;
     }
 }

package/dist/indexer/build-cache/manifest.js.map

@@ -1 +1 @@
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package/dist/indexer/build-cache/module-cache.d.ts

@@ -24,6 +24,7 @@ export type FileSignature = {
 export declare function fileSignature(file: string, strict?: boolean, gitSig?: string, opts?: {
     forceContentHash?: boolean;
 }): Promise<FileSignature>;
+export declare function fileSignatureFromSource(source: string, gitSig?: string): FileSignature;
 export declare function cacheSignatureForFile(file: string, sigInfo: FileSignature, opts?: BuildOptions): Promise<string>;
 export declare function buildBloomFilterForFile(file: string, opts?: Pick<BuildOptions, "languageExtensions">): Promise<import("../../util/bloomFilter.js").BloomFilter | null>;
 export declare function transformPersistedExportFromModule(projectRoot: string, entry: Exclude<ExportEntry, {

package/dist/indexer/build-cache/module-cache.d.ts.map

@@ -1 +1 @@
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package/dist/indexer/build-cache/module-cache.js

@@ -236,6 +236,12 @@ export async function fileSignature(file, strict, gitSig, opts) {
     }
     return { sig, cacheSig, ...(contentHash ? { contentHash } : {}) };
 }
+export function fileSignatureFromSource(source, gitSig) {
+    const contentHash = crypto.createHash("sha256").update(source, "utf8").digest("hex");
+    const sig = `${Buffer.byteLength(source, "utf8")}:${contentHash}`;
+    const cacheSig = gitSig ?? contentHash;
+    return { sig, cacheSig, contentHash, ...(gitSig ? { gitSig } : {}) };
+}
 export async function cacheSignatureForFile(file, sigInfo, opts) {
     let contentSignature = sigInfo.gitSig ?? sigInfo.contentHash;
     if (!contentSignature) {