@lzehrung/codegraph 2.1.0 → 2.1.2

package/dist/chunking/chunkFile.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"chunkFile.d.ts","sourceRoot":"","sources":["../../src/chunking/chunkFile.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAO1D,OAAO,KAAK,EAAkB,KAAK,EAAE,cAAc,EAAe,MAAM,YAAY,CAAC;AAErF,YAAY,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AAExC;;GAEG;AACH,MAAM,WAAW,gBAAgB;IAC/B,yCAAyC;IACzC,QAAQ,EAAE,cAAc,CAAC;IACzB,2BAA2B;IAC3B,MAAM,EAAE,MAAM,CAAC;IACf,8CAA8C;IAC9C,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC9B,0EAA0E;IAC1E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,wEAAwE;IACxE,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,iEAAiE;IACjE,SAAS,CAAC,EAAE,cAAc,GAAG,SAAS,CAAC;CACxC;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,gBAAgB,GAAG,KAAK,EAAE,CAyDzD"}
+{"version":3,"file":"chunkFile.d.ts","sourceRoot":"","sources":["../../src/chunking/chunkFile.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAO1D,OAAO,KAAK,EAAkB,KAAK,EAAE,cAAc,EAAe,MAAM,YAAY,CAAC;AAErF,YAAY,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AAExC;;GAEG;AACH,MAAM,WAAW,gBAAgB;IAC/B,yCAAyC;IACzC,QAAQ,EAAE,cAAc,CAAC;IACzB,2BAA2B;IAC3B,MAAM,EAAE,MAAM,CAAC;IACf,8CAA8C;IAC9C,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC9B,0EAA0E;IAC1E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,wEAAwE;IACxE,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,iEAAiE;IACjE,SAAS,CAAC,EAAE,cAAc,GAAG,SAAS,CAAC;CACxC;AAED;;;;;;;;;;;GAWG;AACH,MAAM,MAAM,0BAA0B,GAAG;IACvC,MAAM,EAAE,KAAK,EAAE,CAAC;IAChB,YAAY,EAAE,KAAK,EAAE,CAAC;CACvB,CAAC;AAEF,wBAAgB,oBAAoB,CAAC,IAAI,EAAE,gBAAgB,GAAG,0BAA0B,CA8FvF;AAED,wBAAgB,SAAS,CAAC,IAAI,EAAE,gBAAgB,GAAG,KAAK,EAAE,CAEzD"}

package/dist/chunking/chunkFile.js

@@ -4,19 +4,7 @@ import { withStableChunkIds } from "./chunkId.js";
 import { fillGapsWithMiscChunks, mergeSmallChunks } from "./chunkMerge.js";
 import { splitLargeBlockSimple, splitLargeBlockUsingInnerBlocks } from "./chunkSplit.js";
 import { countWhitespaceTokens } from "./tokenizer.js";
-/**
- * Splits code into semantic chunks using Tree-sitter queries.
- * Nested declarations retain their hierarchical chunks: parents and children are
- * emitted independently. Every source byte is covered by at least one chunk, and
- * no individual chunk text repeats a source span internally.
- *
- * A parent that exceeds `maxTokens` is split at complete source-line boundaries,
- * while an individual oversized line is split at token boundaries. Child
- * declarations remain available as their own chunks.
- * @param opts Chunking options
- * @returns Array of semantic chunks
- */
-export function chunkFile(opts) {
+export function chunkFileWithSymbols(opts) {
     const { language, source, filePath, minTokens = 150, maxTokens = 400, tokenizer = countWhitespaceTokens } = opts;
     const matches = getChunkMatches(language, source, filePath);
     const newlineOffsets = collectNewlineOffsets(source);
@@ -31,9 +19,20 @@ export function chunkFile(opts) {
         appendBlockChunks(comment, [], source, tokenizer, maxTokens, preliminaryChunks, language.id, newlineOffsets, filePath);
     }
     preliminaryChunks.sort((left, right) => left.sourceStart - right.sourceStart || right.sourceEnd - left.sourceEnd);
-    const mergedChunks = mergeSmallChunks(preliminaryChunks, minTokens, maxTokens, tokenizer);
+    if (minTokens <= 1) {
+        const completeChunks = fillGapsWithMiscChunks(preliminaryChunks, source, language.id, filePath, tokenizer, 1, maxTokens, newlineOffsets);
+        const chunks = withStableChunkIds(completeChunks.map(({ sourceStart: _sourceStart, sourceEnd: _sourceEnd, ...chunk }) => chunk), language.id, filePath);
+        return { chunks, symbolChunks: chunks };
+    }
+    const completeSymbolChunks = fillGapsWithMiscChunks(preliminaryChunks, source, language.id, filePath, tokenizer, 1, maxTokens, newlineOffsets);
+    const symbolChunks = withStableChunkIds(completeSymbolChunks.map(({ sourceStart: _sourceStart, sourceEnd: _sourceEnd, ...chunk }) => chunk), language.id, filePath);
+    const mergedChunks = mergeSmallChunks([...preliminaryChunks], minTokens, maxTokens, tokenizer);
     const completeChunks = fillGapsWithMiscChunks(mergedChunks, source, language.id, filePath, tokenizer, minTokens, maxTokens, newlineOffsets);
-    return withStableChunkIds(completeChunks.map(({ sourceStart: _sourceStart, sourceEnd: _sourceEnd, ...chunk }) => chunk), language.id, filePath);
+    const chunks = withStableChunkIds(completeChunks.map(({ sourceStart: _sourceStart, sourceEnd: _sourceEnd, ...chunk }) => chunk), language.id, filePath);
+    return { chunks, symbolChunks };
+}
+export function chunkFile(opts) {
+    return chunkFileWithSymbols(opts).chunks;
 }
 function appendBlockChunks(block, innerBlocks, source, tokenizer, maxTokens, out, languageId, newlineOffsets, filePath) {
     const text = source.slice(block.startByte, block.endByte);

package/dist/chunking/chunkFile.js.map

@@ -1 +1 @@
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package/dist/cli/affected.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"affected.d.ts","sourceRoot":"","sources":["../../src/cli/affected.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,YAAY,EAAgB,MAAM,qBAAqB,CAAC;AAYtE,MAAM,MAAM,iBAAiB,GAAG;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,KAAK,EAAE,MAAM,CAAC;CACf,CAAC;AAEF,MAAM,MAAM,qBAAqB,GAAG;IAClC,YAAY,EAAE,MAAM,CAAC;IACrB,aAAa,EAAE,MAAM,CAAC;CACvB,CAAC;AAEF,MAAM,MAAM,mBAAmB,GAAG;IAChC,aAAa,EAAE,CAAC,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;IACb,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,aAAa,EAAE,iBAAiB,EAAE,CAAC;IACnC,aAAa,EAAE,qBAAqB,CAAC;CACtC,CAAC;AAEF,MAAM,MAAM,sBAAsB,GAAG;IACnC,aAAa,EAAE,MAAM,CAAC;IACtB,YAAY,EAAE,YAAY,CAAC;IAC3B,WAAW,EAAE,SAAS,MAAM,EAAE,CAAC;IAC/B,MAAM,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,GAAG,SAAS,CAAC;IAC7C,OAAO,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC;IACnC,aAAa,EAAE,WAAW,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,CAAC,CAAC;IACtD,SAAS,EAAE,MAAM,OAAO,CAAC,MAAM,CAAC,CAAC;IACjC,aAAa,EAAE,CAAC,KAAK,EAAE,OAAO,KAAK,IAAI,CAAC;IACxC,eAAe,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,IAAI,CAAC;IAC3C,eAAe,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,IAAI,CAAC;IAC3C,IAAI,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,KAAK,CAAC;CAC/B,CAAC;AA+RF,wBAAsB,qBAAqB,CAAC,OAAO,EAAE,sBAAsB,GAAG,OAAO,CAAC,IAAI,CAAC,CAoB1F"}
+{"version":3,"file":"affected.d.ts","sourceRoot":"","sources":["../../src/cli/affected.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,YAAY,EAAgB,MAAM,qBAAqB,CAAC;AAYtE,MAAM,MAAM,iBAAiB,GAAG;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,KAAK,EAAE,MAAM,CAAC;CACf,CAAC;AAEF,MAAM,MAAM,qBAAqB,GAAG;IAClC,YAAY,EAAE,MAAM,CAAC;IACrB,aAAa,EAAE,MAAM,CAAC;CACvB,CAAC;AAEF,MAAM,MAAM,mBAAmB,GAAG;IAChC,aAAa,EAAE,CAAC,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;IACb,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,aAAa,EAAE,iBAAiB,EAAE,CAAC;IACnC,aAAa,EAAE,qBAAqB,CAAC;CACtC,CAAC;AAEF,MAAM,MAAM,sBAAsB,GAAG;IACnC,aAAa,EAAE,MAAM,CAAC;IACtB,YAAY,EAAE,YAAY,CAAC;IAC3B,WAAW,EAAE,SAAS,MAAM,EAAE,CAAC;IAC/B,MAAM,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,GAAG,SAAS,CAAC;IAC7C,OAAO,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC;IACnC,aAAa,EAAE,WAAW,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,CAAC,CAAC;IACtD,SAAS,EAAE,MAAM,OAAO,CAAC,MAAM,CAAC,CAAC;IACjC,aAAa,EAAE,CAAC,KAAK,EAAE,OAAO,KAAK,IAAI,CAAC;IACxC,eAAe,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,IAAI,CAAC;IAC3C,eAAe,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,IAAI,CAAC;IAC3C,IAAI,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,KAAK,CAAC;CAC/B,CAAC;AAsSF,wBAAsB,qBAAqB,CAAC,OAAO,EAAE,sBAAsB,GAAG,OAAO,CAAC,IAAI,CAAC,CAoB1F"}

package/dist/cli/affected.js

@@ -40,16 +40,16 @@ function addAffectedTest(affected, file, reason, depth) {
     }
     affected.set(file, { file, reasons: new Set([reason]), depth });
 }
-function maybeAddTest(affected, state, file, reason, depth, omittedCounts) {
+function maybeAddTest(affected, state, file, reason, depth, filteredTests) {
     if (!state.matchesTestFile(file))
         return;
     if (!state.passesFilter(file)) {
-        omittedCounts.filteredTests += 1;
+        filteredTests.add(fileIdentityKey(file));
         return;
     }
     addAffectedTest(affected, file, reason, depth);
 }
-async function addDeletedImporterTests(affected, state, deletedFiles, omittedCounts) {
+async function addDeletedImporterTests(affected, state, deletedFiles, filteredTests) {
     if (!state.maxDepth)
         return;
     const adjacency = state.index.graphAdjacency ?? graphAdjacencyFor(state.index.graph);
@@ -68,7 +68,7 @@ async function addDeletedImporterTests(affected, state, deletedFiles, omittedCou
         while (queueIndex < queue.length) {
             const current = queue[queueIndex];
             queueIndex += 1;
-            maybeAddTest(affected, state, current.file, `deleted import from ${reasonSource}, depth ${current.depth}`, current.depth, omittedCounts);
+            maybeAddTest(affected, state, current.file, `deleted import from ${reasonSource}, depth ${current.depth}`, current.depth, filteredTests);
             if (current.depth >= state.maxDepth)
                 continue;
             const nextDepth = current.depth + 1;
@@ -83,7 +83,8 @@ async function addDeletedImporterTests(affected, state, deletedFiles, omittedCou
 }
 async function collectAffectedTests(changedFiles, deletedFiles, state) {
     const affected = new Map();
-    const omittedCounts = { changedFiles: 0, filteredTests: 0 };
+    const filteredTests = new Set();
+    let omittedChangedFiles = 0;
     const resolver = createGraphFileResolver(state.index.graph.nodes);
     const graphNodeKeys = new Set(Array.from(state.index.graph.nodes, fileIdentityKey));
     const adjacency = state.index.graphAdjacency ?? graphAdjacencyFor(state.index.graph);
@@ -92,13 +93,13 @@ async function collectAffectedTests(changedFiles, deletedFiles, state) {
         const changedDisplayPath = toProjectDisplayPath(state.projectRoot, changedFile);
         const changedLooksLikeTest = isTestFilePath(changedDisplayPath, pathPatterns);
         if (changedLooksLikeTest) {
-            maybeAddTest(affected, state, changedFile, "changed test file", 0, omittedCounts);
+            maybeAddTest(affected, state, changedFile, "changed test file", 0, filteredTests);
         }
         if (!state.maxDepth)
             continue;
         const startFile = resolver(changedFile);
         if (!graphNodeKeys.has(fileIdentityKey(startFile))) {
-            omittedCounts.changedFiles += 1;
+            omittedChangedFiles += 1;
             continue;
         }
         const visited = new Set([fileIdentityKey(startFile)]);
@@ -116,12 +117,18 @@ async function collectAffectedTests(changedFiles, deletedFiles, state) {
                     continue;
                 visited.add(neighborKey);
                 queue.push({ file: neighbor, depth: nextDepth });
-                maybeAddTest(affected, state, neighbor, `reverse dependency from ${changedDisplayPath}, depth ${nextDepth}`, nextDepth, omittedCounts);
+                maybeAddTest(affected, state, neighbor, `reverse dependency from ${changedDisplayPath}, depth ${nextDepth}`, nextDepth, filteredTests);
             }
         }
     }
-    await addDeletedImporterTests(affected, state, deletedFiles, omittedCounts);
-    return { affected, omittedCounts };
+    await addDeletedImporterTests(affected, state, deletedFiles, filteredTests);
+    return {
+        affected,
+        omittedCounts: {
+            changedFiles: omittedChangedFiles,
+            filteredTests: filteredTests.size,
+        },
+    };
 }
 function formatAffectedEntry(projectRoot, entry) {
     return {

package/dist/cli/affected.js.map

@@ -1 +1 @@
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package/dist/cli/callHierarchy.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"callHierarchy.d.ts","sourceRoot":"","sources":["../../src/cli/callHierarchy.ts"],"names":[],"mappings":"AAEA,OAAO,EAAiB,KAAK,sBAAsB,EAAE,MAAM,cAAc,CAAC;AAI1E,MAAM,MAAM,2BAA2B,GAAG,sBAAsB,CAAC;AAOjE,KAAK,oBAAoB,GAAG,SAAS,GAAG,SAAS,CAAC;AAElD,wBAAsB,0BAA0B,CAC9C,OAAO,EAAE,oBAAoB,EAC7B,OAAO,EAAE,2BAA2B,GACnC,OAAO,CAAC,IAAI,CAAC,CAuCf"}
+{"version":3,"file":"callHierarchy.d.ts","sourceRoot":"","sources":["../../src/cli/callHierarchy.ts"],"names":[],"mappings":"AAEA,OAAO,EAAiB,KAAK,sBAAsB,EAAE,MAAM,cAAc,CAAC;AAI1E,MAAM,MAAM,2BAA2B,GAAG,sBAAsB,CAAC;AAOjE,KAAK,oBAAoB,GAAG,SAAS,GAAG,SAAS,CAAC;AAElD,wBAAsB,0BAA0B,CAC9C,OAAO,EAAE,oBAAoB,EAC7B,OAAO,EAAE,2BAA2B,GACnC,OAAO,CAAC,IAAI,CAAC,CA8Cf"}

package/dist/cli/callHierarchy.js

@@ -12,9 +12,16 @@ export async function handleCallHierarchyCommand(command, context) {
         context.writeStderrLine(helpText(command).trimEnd());
         context.exit(2);
     }
+    let depth;
+    let limit;
+    try {
+        depth = parseBoundedIntegerOption(context.getOpt("--depth"), "--depth", DEFAULT_CALL_HIERARCHY_DEPTH, 1, MAX_CALL_HIERARCHY_DEPTH);
+        limit = parseBoundedIntegerOption(context.getOpt("--limit"), "--limit", DEFAULT_CALL_HIERARCHY_LIMIT, 0, MAX_CALL_HIERARCHY_LIMIT);
+    }
+    catch (error) {
+        exitWithError(context, error, 2);
+    }
     try {
-        const depth = parseBoundedIntegerOption(context.getOpt("--depth"), "--depth", DEFAULT_CALL_HIERARCHY_DEPTH, 1, MAX_CALL_HIERARCHY_DEPTH);
-        const limit = parseBoundedIntegerOption(context.getOpt("--limit"), "--limit", DEFAULT_CALL_HIERARCHY_LIMIT, 0, MAX_CALL_HIERARCHY_LIMIT);
         const request = {
             root: context.root,
             handle,

package/dist/cli/callHierarchy.js.map

@@ -1 +1 @@
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+{"version":3,"file":"callHierarchy.js","sourceRoot":"","sources":["../../src/cli/callHierarchy.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,WAAW,EAA8B,MAAM,2BAA2B,CAAC;AAEjG,OAAO,EAAE,aAAa,EAA+B,MAAM,cAAc,CAAC;AAC1E,OAAO,EAAE,iBAAiB,EAAE,iBAAiB,EAAE,MAAM,WAAW,CAAC;AACjE,OAAO,EAAE,yBAAyB,EAAE,MAAM,cAAc,CAAC;AAIzD,MAAM,4BAA4B,GAAG,CAAC,CAAC;AACvC,MAAM,wBAAwB,GAAG,CAAC,CAAC;AACnC,MAAM,4BAA4B,GAAG,GAAG,CAAC;AACzC,MAAM,wBAAwB,GAAG,GAAG,CAAC;AAIrC,MAAM,CAAC,KAAK,UAAU,0BAA0B,CAC9C,OAA6B,EAC7B,OAAoC;IAEpC,MAAM,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC;IAC9C,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,OAAO,CAAC,eAAe,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;QACrD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,IAAI,KAAa,CAAC;IAClB,IAAI,KAAa,CAAC;IAClB,IAAI,CAAC;QACH,KAAK,GAAG,yBAAyB,CAC/B,OAAO,CAAC,MAAM,CAAC,SAAS,CAAC,EACzB,SAAS,EACT,4BAA4B,EAC5B,CAAC,EACD,wBAAwB,CACzB,CAAC;QACF,KAAK,GAAG,yBAAyB,CAC/B,OAAO,CAAC,MAAM,CAAC,SAAS,CAAC,EACzB,SAAS,EACT,4BAA4B,EAC5B,CAAC,EACD,wBAAwB,CACzB,CAAC;IACJ,CAAC;IAAC,OAAO,KAAc,EAAE,CAAC;QACxB,aAAa,CAAC,OAAO,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC;IACnC,CAAC;IAED,IAAI,CAAC;QACH,MAAM,OAAO,GAAG;YACd,IAAI,EAAE,OAAO,CAAC,IAAI;YAClB,MAAM;YACN,GAAG,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,YAAY,EAAE,OAAO,CAAC,YAAY,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YACvE,KAAK;YACL,KAAK;YACL,gBAAgB,EAAE,OAAO,CAAC,OAAO,CAAC,qBAAqB,CAAC;SACzD,CAAC;QACF,MAAM,QAAQ,GAAG,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,MAAM,WAAW,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,WAAW,CAAC,OAAO,CAAC,CAAC;QACjG,IAAI,OAAO,CAAC,OAAO,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC9B,OAAO,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAC;YAChC,OAAO;QACT,CAAC;QACD,OAAO,CAAC,eAAe,CAAC,2BAA2B,CAAC,QAAQ,CAAC,CAAC,CAAC;IACjE,CAAC;IAAC,OAAO,KAAc,EAAE,CAAC;QACxB,aAAa,CAAC,OAAO,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC;IACnC,CAAC;AACH,CAAC;AAED,SAAS,2BAA2B,CAAC,QAA+B;IAClE,MAAM,KAAK,GAAG,QAAQ,CAAC,SAAS,KAAK,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC;IACxE,MAAM,KAAK,GAAG,CAAC,WAAW,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE,EAAE,GAAG,KAAK,KAAK,QAAQ,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IACnG,KAAK,MAAM,KAAK,IAAI,QAAQ,CAAC,OAAO,EAAE,CAAC;QACrC,KAAK,CAAC,IAAI,CAAC,GAAG,KAAK,CAAC,KAAK,KAAK,YAAY,CAAC,KAAK,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;QAC5D,KAAK,MAAM,QAAQ,IAAI,KAAK,CAAC,SAAS;YAAE,KAAK,CAAC,IAAI,CAAC,MAAM,cAAc,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;IACvF,CAAC;IACD,aAAa,CAAC,KAAK,EAAE,SAAS,EAAE,QAAQ,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC;IAChE,aAAa,CAAC,KAAK,EAAE,WAAW,EAAE,QAAQ,CAAC,aAAa,CAAC,SAAS,CAAC,CAAC;IACpE,aAAa,CAAC,KAAK,EAAE,kBAAkB,EAAE,QAAQ,CAAC,aAAa,CAAC,eAAe,CAAC,CAAC;IACjF,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED,SAAS,YAAY,CAAC,MAAsB;IAC1C,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,GAAG,MAAM,CAAC,QAAQ,CAAC;IACxC,OAAO,GAAG,MAAM,CAAC,IAAI,KAAK,MAAM,CAAC,IAAI,KAAK,IAAI,IAAI,KAAK,CAAC,KAAK,CAAC,IAAI,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC;AAC7F,CAAC;AAED,SAAS,cAAc,CAAC,QAA0B;IAChD,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,GAAG,QAAQ,CAAC;IACjC,OAAO,GAAG,IAAI,IAAI,KAAK,CAAC,KAAK,CAAC,IAAI,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,IAAI,IAAI,KAAK,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC;AACnG,CAAC;AAED,SAAS,aAAa,CAAC,KAAe,EAAE,KAAa,EAAE,OAA2B;IAChF,IAAI,OAAO;QAAE,KAAK,CAAC,IAAI,CAAC,WAAW,KAAK,KAAK,OAAO,EAAE,CAAC,CAAC;AAC1D,CAAC;AAED,SAAS,QAAQ,CAAC,OAA6B;IAC7C,OAAO,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,iBAAiB,CAAC,CAAC,CAAC,iBAAiB,CAAC;AACvE,CAAC"}

package/dist/cli/commandTable.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"commandTable.d.ts","sourceRoot":"","sources":["../../src/cli/commandTable.ts"],"names":[],"mappings":"AAeA,OAAO,KAAK,EAAE,cAAc,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAIhF;;;;;GAKG;AACH,MAAM,MAAM,eAAe,GACvB;IAAE,KAAK,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,CAAC,GAAG,EAAE,cAAc,KAAK,OAAO,CAAC,IAAI,CAAC,GAAG,IAAI,CAAA;CAAE,GACrE;IAAE,KAAK,EAAE,SAAS,CAAC;IAAC,GAAG,EAAE,CAAC,GAAG,EAAE,iBAAiB,KAAK,OAAO,CAAC,IAAI,CAAC,CAAA;CAAE,CAAC;AAwEzE,eAAO,MAAM,iBAAiB,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,eAAe,CAAC,CAqmBvE,CAAC"}
+{"version":3,"file":"commandTable.d.ts","sourceRoot":"","sources":["../../src/cli/commandTable.ts"],"names":[],"mappings":"AAeA,OAAO,KAAK,EAAE,cAAc,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAIhF;;;;;GAKG;AACH,MAAM,MAAM,eAAe,GACvB;IAAE,KAAK,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,CAAC,GAAG,EAAE,cAAc,KAAK,OAAO,CAAC,IAAI,CAAC,GAAG,IAAI,CAAA;CAAE,GACrE;IAAE,KAAK,EAAE,SAAS,CAAC;IAAC,GAAG,EAAE,CAAC,GAAG,EAAE,iBAAiB,KAAK,OAAO,CAAC,IAAI,CAAC,CAAA;CAAE,CAAC;AAwEzE,eAAO,MAAM,iBAAiB,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,eAAe,CAAC,CAinBvE,CAAC"}

package/dist/cli/commandTable.js

@@ -79,8 +79,8 @@ export const CLI_COMMAND_TABLE = {
     doctor: {
         stage: "base",
         run: async (ctx) => {
-            const { buildDoctorReport } = await import("./doctor.js");
-            writeCliOutput({ hasFlag: ctx.hasFlag, writeJSONLine, writeStdoutLine }, buildDoctorReport(ctx.parsed.positionals.at(-1)));
+            const { buildDoctorReport, formatDoctorSummary } = await import("./doctor.js");
+            writeCliOutput({ hasFlag: ctx.hasFlag, writeJSONLine, writeStdoutLine }, buildDoctorReport(ctx.parsed.positionals.at(-1)), formatDoctorSummary);
         },
     },
     skill: {
@@ -269,7 +269,7 @@ export const CLI_COMMAND_TABLE = {
             const { handleMcpServeCommand } = await import("./mcp.js");
             await handleMcpServeCommand({
                 positionals: ctx.parsed.positionals,
-                root: ctx.projectRootFs,
+                root: ctx.projectRootAbs,
                 buildOptions: ctx.buildAgentOptions(),
                 getOpt: ctx.getOpt,
                 hasFlag: ctx.hasFlag,
@@ -290,6 +290,7 @@ export const CLI_COMMAND_TABLE = {
                 projectRootFs: ctx.projectRootFs,
                 files,
                 languageExtensions: ctx.config.languages?.extensions,
+                cacheLocation: ctx.config.cache?.location,
                 getOpt: ctx.getOpt,
                 hasFlag: ctx.hasFlag,
                 cwd: getCwd,
@@ -317,6 +318,7 @@ export const CLI_COMMAND_TABLE = {
             await handleGraphCommand({
                 projectRootFs: ctx.projectRootFs,
                 discoveryOptions: ctx.discoveryOptions,
+                cacheLocation: ctx.config.cache?.location,
                 nativeMode: ctx.nativeMode,
                 workerOpts: ctx.workerOpts,
                 progressHandler: ctx.progressHandler,
@@ -352,6 +354,7 @@ export const CLI_COMMAND_TABLE = {
                 nativeMode: ctx.nativeMode,
                 workerOpts: ctx.workerOpts,
                 languageExtensions: ctx.config.languages?.extensions,
+                cacheLocation: ctx.config.cache?.location,
                 progressHandler: ctx.progressHandler,
                 graphOptions: ctx.hasGraphOverrides || ctx.nativeMode !== "auto" ? ctx.buildGraphOptions() : undefined,
                 reportEnabled: ctx.reportEnabled,
@@ -372,6 +375,7 @@ export const CLI_COMMAND_TABLE = {
         stage: "project",
         run: async (ctx) => {
             const driftGraphOptions = ctx.hasGraphOverrides || ctx.nativeMode !== "auto" ? ctx.buildGraphOptions() : undefined;
+            const driftCacheDir = ctx.getOpt("--cache-dir");
             const { handleDriftCommand } = await import("./drift.js");
             await handleDriftCommand({
                 projectRootFs: ctx.projectRootFs,
@@ -386,6 +390,8 @@ export const CLI_COMMAND_TABLE = {
                     ...(ctx.nativeMode !== "auto" ? { native: ctx.nativeMode } : {}),
                     ...(ctx.config.languages?.extensions ? { languageExtensions: ctx.config.languages.extensions } : {}),
                     ...ctx.workerOpts,
+                    ...(driftCacheDir ? { cacheDir: driftCacheDir } : {}),
+                    ...(ctx.config.cache?.location ? { cacheLocation: ctx.config.cache.location } : {}),
                 },
                 writeJSONLine,
                 writeStdoutLine,
@@ -462,6 +468,7 @@ export const CLI_COMMAND_TABLE = {
             await handleImpactCommand({
                 projectRootFs: ctx.projectRootFs,
                 discoveryOptions: ctx.discoveryOptions,
+                cacheLocation: ctx.config.cache?.location,
                 getOpt: ctx.getOpt,
                 hasFlag: ctx.hasFlag,
                 parsedOptions: ctx.parsed.options,
@@ -514,6 +521,7 @@ export const CLI_COMMAND_TABLE = {
             await handleReviewCommand({
                 projectRootFs: ctx.projectRootFs,
                 discoveryOptions: ctx.discoveryOptions,
+                cacheLocation: ctx.config.cache?.location,
                 reportFile: ctx.reportFile,
                 commandReport,
                 getOpt: ctx.getOpt,
@@ -575,11 +583,12 @@ export const CLI_COMMAND_TABLE = {
         },
     },
     links: {
-        stage: "base",
+        stage: "project",
         run: async (ctx) => {
             const { handleLinksCommand } = await import("./links.js");
             await handleLinksCommand({
                 projectRootFs: ctx.projectRootFs,
+                discoveryOptions: ctx.discoveryOptions,
                 hasFlag: ctx.hasFlag,
                 writeJSONLine,
                 writeStdoutLine,
@@ -613,6 +622,7 @@ export const CLI_COMMAND_TABLE = {
                 includeRootsAbs: ctx.includeRootsAbs,
                 discoveryOptions: ctx.discoveryOptions,
                 languageExtensions: ctx.config.languages?.extensions,
+                cacheLocation: ctx.config.cache?.location,
                 graphOptions: ctx.hasGraphOverrides || ctx.nativeMode !== "auto" ? ctx.buildGraphOptions() : undefined,
                 nativeMode: ctx.nativeMode,
                 workerOpts: ctx.workerOpts,
@@ -638,6 +648,7 @@ export const CLI_COMMAND_TABLE = {
                 includeRootsAbs: ctx.includeRootsAbs,
                 discoveryOptions: ctx.discoveryOptions,
                 languageExtensions: ctx.config.languages?.extensions,
+                cacheLocation: ctx.config.cache?.location,
                 graphOptions: ctx.hasGraphOverrides || ctx.nativeMode !== "auto" ? ctx.buildGraphOptions() : undefined,
                 nativeMode: ctx.nativeMode,
                 workerOpts: ctx.workerOpts,
@@ -682,6 +693,7 @@ function navigationArgs(ctx) {
         nativeMode: ctx.nativeMode,
         workerOpts: ctx.workerOpts,
         progressHandler: ctx.progressHandler,
+        cacheLocation: ctx.config.cache?.location,
         writeJSONLine,
         writeStdoutLine,
         writeStderrLine,

package/dist/cli/commandTable.js.map

@@ -1 +1 @@
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package/dist/cli/doctor.d.ts

@@ -25,8 +25,15 @@ export type DoctorReport = {
         origin?: DoctorNativeOriginReport;
         update?: DoctorNativeUpdateReport;
     };
+    cache: {
+        path: string;
+        anchor: string;
+        layer: string;
+    };
     indexArtifact?: IndexedArtifactReport;
 };
+/** Pretty formatter for `codegraph doctor`. Stable Package/Cache/Native(+Origin/Update) nesting matches JSON. */
+export declare function formatDoctorSummary(report: DoctorReport): string;
 export declare function findStaleNpmRetirementPaths(packageRoot: string, limit?: number): string[];
 export declare function buildDoctorReport(indexPath?: string): DoctorReport;
 export {};

package/dist/cli/doctor.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../src/cli/doctor.ts"],"names":[],"mappings":"AAUA,OAAO,EAIL,KAAK,wBAAwB,EAC9B,MAAM,wBAAwB,CAAC;AAEhC,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,wBAAwB,CAAC;AAGlE,KAAK,qBAAqB,GAAG;IAC3B,IAAI,EAAE,WAAW,GAAG,aAAa,GAAG,WAAW,GAAG,gBAAgB,GAAG,SAAS,CAAC;IAC/E,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,OAAO,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC,CAAC;CACrD,CAAC;AAEF,MAAM,MAAM,wBAAwB,GAAG,mBAAmB,GAAG;IAC3D,2BAA2B,EAAE,OAAO,CAAC;CACtC,CAAC;AAEF,MAAM,MAAM,wBAAwB,GAAG;IACrC,oBAAoB,EAAE,MAAM,EAAE,CAAC;IAC/B,eAAe,EAAE,OAAO,CAAC;IACzB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB,CAAC;AACF,MAAM,MAAM,YAAY,GAAG;IACzB,OAAO,EAAE,wBAAwB,CAAC;IAClC,MAAM,EAAE;QACN,SAAS,EAAE,OAAO,CAAC;QACnB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,oBAAoB,EAAE,MAAM,EAAE,CAAC;QAC/B,MAAM,CAAC,EAAE,wBAAwB,CAAC;QAClC,MAAM,CAAC,EAAE,wBAAwB,CAAC;KACnC,CAAC;IACF,KAAK,EAAE;QACL,IAAI,EAAE,MAAM,CAAC;QACb,MAAM,EAAE,MAAM,CAAC;QACf,KAAK,EAAE,MAAM,CAAC;KACf,CAAC;IACF,aAAa,CAAC,EAAE,qBAAqB,CAAC;CACvC,CAAC;AAgKF,iHAAiH;AACjH,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,YAAY,GAAG,MAAM,CAwFhE;AAED,wBAAgB,2BAA2B,CAAC,WAAW,EAAE,MAAM,EAAE,KAAK,SAAK,GAAG,MAAM,EAAE,CAiBrF;AAqCD,wBAAgB,iBAAiB,CAAC,SAAS,CAAC,EAAE,MAAM,GAAG,YAAY,CAqClE"}