@lzehrung/codegraph-core 2.3.6 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (20) hide show
  1. package/dist/agent/session.d.ts.map +1 -1
  2. package/dist/agent/session.js +12 -0
  3. package/dist/agent/session.js.map +1 -1
  4. package/dist/indexer/build-index.d.ts.map +1 -1
  5. package/dist/indexer/build-index.js +94 -19
  6. package/dist/indexer/build-index.js.map +1 -1
  7. package/dist/indexer/finalize.d.ts.map +1 -1
  8. package/dist/indexer/finalize.js +7 -2
  9. package/dist/indexer/finalize.js.map +1 -1
  10. package/dist/indexer/types.d.ts +2 -0
  11. package/dist/indexer/types.d.ts.map +1 -1
  12. package/dist/util/git.d.ts +13 -0
  13. package/dist/util/git.d.ts.map +1 -1
  14. package/dist/util/git.js +37 -0
  15. package/dist/util/git.js.map +1 -1
  16. package/dist/util/projectFiles.d.ts +6 -3
  17. package/dist/util/projectFiles.d.ts.map +1 -1
  18. package/dist/util/projectFiles.js +14 -27
  19. package/dist/util/projectFiles.js.map +1 -1
  20. package/package.json +2 -2
package/dist/agent/session.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"session.d.ts","sourceRoot":"","sources":["../../src/agent/session.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,YAAY,EAAE,WAAW,EAA2B,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAG5G,OAAO,EAAoB,KAAK,WAAW,EAAE,MAAM,2BAA2B,CAAC;AAC/E,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAAoB,KAAK,2BAA2B,EAAE,MAAM,yBAAyB,CAAC;AAM7F,OAAO,EAAqB,KAAK,eAAe,EAAE,MAAM,uBAAuB,CAAC;AAEhF,OAAO,EAA4B,KAAK,yBAAyB,EAAE,MAAM,kBAAkB,CAAC;AAE5F,MAAM,MAAM,oBAAoB,GAAG;IACjC,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,UAAU,CAAC,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACzC,KAAK,EAAE,YAAY,CAAC;IACpB,SAAS,EAAE,KAAK,CAAC;IACjB,WAAW,EAAE,WAAW,CAAC;IACzB,WAAW,CAAC,EAAE,WAAW,CAAC;IAC1B,QAAQ,EAAE,eAAe,CAAC;IAC1B,cAAc,CAAC,EAAE,WAAW,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAAC;CAC1D,CAAC;AAEF,MAAM,MAAM,uBAAuB,GAAG;IACpC;;;;OAIG;IACH,WAAW,CAAC,EAAE,OAAO,GAAG,OAAO,GAAG,MAAM,CAAC;CAC1C,CAAC;AAEF,MAAM,MAAM,oBAAoB,GAAG,QAAQ,GAAG,OAAO,GAAG,MAAM,CAAC;AAE/D,MAAM,MAAM,oBAAoB,GAC5B;IAAE,KAAK,EAAE,OAAO,CAAA;CAAE,GAClB;IAAE,KAAK,EAAE,WAAW,CAAC;IAAC,YAAY,EAAE,MAAM,EAAE,CAAA;CAAE,GAC9C;IACE,KAAK,EAAE,OAAO,CAAC;IACf,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IACzB,uBAAuB,EAAE,MAAM,CAAC;IAChC,MAAM,EAAE,MAAM,CAAC;CAChB,CAAC;AAEN,MAAM,MAAM,4BAA4B,GAAG;IACzC,MAAM,CAAC,EAAE,oBAAoB,CAAC;IAC9B,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,mBAAmB,CAAC,EAAE,MAAM,CAAC;CAC9B,CAAC;AAEF,MAAM,MAAM,mBAAmB,GAAG;IAChC,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,CAAC,EAAE,2BAA2B,CAAC;IACxC,YAAY,CAAC,EAAE,YAAY,CAAC;IAC5B,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,SAAS,CAAC,EAAE,4BAA4B,CAAC;CAC1C,CAAC;AAEF,MAAM,MAAM,YAAY,GAAG;IACzB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,aAAa,CAAC,EAAE,MAAM,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IACxC,SAAS,CAAC,EAAE,MAAM,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IACpC,WAAW,EAAE,CAAC,WAAW,CAAC,EAAE,uBAAuB,KAAK,OAAO,CAAC,oBAAoB,CAAC,CAAC;IACtF,6FAA6F;IAC7F,qBAAqB,CAAC,EAAE,MAAM,OAAO,CAAC,yBAAyB,CAAC,CAAC;IACjE,cAAc,CAAC,EAAE,MAAM,OAAO,CAAC,oBAAoB,CAAC,CAAC;IACrD,UAAU,EAAE,MAAM,IAAI,CAAC;CACxB,CAAC;AAEF,wBAAgB,uCAAuC,CACrD,OAAO,EAAE;IAAE,OAAO,CAAC,EAAE,YAAY,CAAC;IAAC,YAAY,CAAC,EAAE,YAAY,CAAA;CAAE,EAChE,QAAQ,EAAE,MAAM,GACf,IAAI,CAIN;AAMD,OAAO,EAAE,iCAAiC,EAAE,MAAM,6BAA6B,CAAC;AAChF,OAAO,EAAE,iCAAiC,EAAE,CAAC;AAC7C,eAAO,MAAM,iCAAiC,OAAQ,CAAC;AAOvD,MAAM,MAAM,kBAAkB,GAAG;IAC/B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB,CAAC;AA6EF,wBAAsB,qBAAqB,CAAC,OAAO,EAAE,mBAAmB,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAE3F;AAuGD,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,mBAAmB,GAAG,YAAY,CAuQ7E"}
1
+ {"version":3,"file":"session.d.ts","sourceRoot":"","sources":["../../src/agent/session.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,YAAY,EAAE,WAAW,EAA2B,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAG5G,OAAO,EAAoB,KAAK,WAAW,EAAE,MAAM,2BAA2B,CAAC;AAC/E,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAAoB,KAAK,2BAA2B,EAAE,MAAM,yBAAyB,CAAC;AAM7F,OAAO,EAAqB,KAAK,eAAe,EAAE,MAAM,uBAAuB,CAAC;AAEhF,OAAO,EAA4B,KAAK,yBAAyB,EAAE,MAAM,kBAAkB,CAAC;AAE5F,MAAM,MAAM,oBAAoB,GAAG;IACjC,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,UAAU,CAAC,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACzC,KAAK,EAAE,YAAY,CAAC;IACpB,SAAS,EAAE,KAAK,CAAC;IACjB,WAAW,EAAE,WAAW,CAAC;IACzB,WAAW,CAAC,EAAE,WAAW,CAAC;IAC1B,QAAQ,EAAE,eAAe,CAAC;IAC1B,cAAc,CAAC,EAAE,WAAW,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAAC;CAC1D,CAAC;AAEF,MAAM,MAAM,uBAAuB,GAAG;IACpC;;;;OAIG;IACH,WAAW,CAAC,EAAE,OAAO,GAAG,OAAO,GAAG,MAAM,CAAC;CAC1C,CAAC;AAEF,MAAM,MAAM,oBAAoB,GAAG,QAAQ,GAAG,OAAO,GAAG,MAAM,CAAC;AAE/D,MAAM,MAAM,oBAAoB,GAC5B;IAAE,KAAK,EAAE,OAAO,CAAA;CAAE,GAClB;IAAE,KAAK,EAAE,WAAW,CAAC;IAAC,YAAY,EAAE,MAAM,EAAE,CAAA;CAAE,GAC9C;IACE,KAAK,EAAE,OAAO,CAAC;IACf,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IACzB,uBAAuB,EAAE,MAAM,CAAC;IAChC,MAAM,EAAE,MAAM,CAAC;CAChB,CAAC;AAEN,MAAM,MAAM,4BAA4B,GAAG;IACzC,MAAM,CAAC,EAAE,oBAAoB,CAAC;IAC9B,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,mBAAmB,CAAC,EAAE,MAAM,CAAC;CAC9B,CAAC;AAEF,MAAM,MAAM,mBAAmB,GAAG;IAChC,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,CAAC,EAAE,2BAA2B,CAAC;IACxC,YAAY,CAAC,EAAE,YAAY,CAAC;IAC5B,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,SAAS,CAAC,EAAE,4BAA4B,CAAC;CAC1C,CAAC;AAEF,MAAM,MAAM,YAAY,GAAG;IACzB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,aAAa,CAAC,EAAE,MAAM,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IACxC,SAAS,CAAC,EAAE,MAAM,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IACpC,WAAW,EAAE,CAAC,WAAW,CAAC,EAAE,uBAAuB,KAAK,OAAO,CAAC,oBAAoB,CAAC,CAAC;IACtF,6FAA6F;IAC7F,qBAAqB,CAAC,EAAE,MAAM,OAAO,CAAC,yBAAyB,CAAC,CAAC;IACjE,cAAc,CAAC,EAAE,MAAM,OAAO,CAAC,oBAAoB,CAAC,CAAC;IACrD,UAAU,EAAE,MAAM,IAAI,CAAC;CACxB,CAAC;AAEF,wBAAgB,uCAAuC,CACrD,OAAO,EAAE;IAAE,OAAO,CAAC,EAAE,YAAY,CAAC;IAAC,YAAY,CAAC,EAAE,YAAY,CAAA;CAAE,EAChE,QAAQ,EAAE,MAAM,GACf,IAAI,CAIN;AAMD,OAAO,EAAE,iCAAiC,EAAE,MAAM,6BAA6B,CAAC;AAChF,OAAO,EAAE,iCAAiC,EAAE,CAAC;AAC7C,eAAO,MAAM,iCAAiC,OAAQ,CAAC;AAOvD,MAAM,MAAM,kBAAkB,GAAG;IAC/B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB,CAAC;AA0FF,wBAAsB,qBAAqB,CAAC,OAAO,EAAE,mBAAmB,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAE3F;AAuGD,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,mBAAmB,GAAG,YAAY,CAuQ7E"}
package/dist/agent/session.js CHANGED
@@ -49,6 +49,17 @@ async function resolveAgentDiscoverySettings(options) {
49
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  ...(cacheLocation ? { cacheLocation } : {}),
50
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  };
51
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  }
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+ function emitAgentFilePlanProgress(options) {
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+ options.buildOptions?.onProgress?.({
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+ type: "progress",
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+ phase: "start",
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+ mode: "check",
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+ message: "Discovering source files",
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+ activity: "Discovering source files",
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+ current: 0,
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+ total: 0,
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+ });
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+ }
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  async function resolveAgentSessionFilePlan(options) {
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  const { discoveryOptions, graphOptions, languageExtensions, cacheLocation } = await resolveAgentDiscoverySettings(options);
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  // Prefer the manifest-plus-Git reconciliation over a full recursive scan whenever it
@@ -75,6 +86,7 @@ async function resolveAgentSessionFilePlan(options) {
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  const { DEFAULT_PROJECT_PATTERNS } = await import("../util/projectFiles.js");
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  const customPatterns = languageExtensionPatterns(languageExtensions);
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  const patterns = customPatterns.length ? [...DEFAULT_PROJECT_PATTERNS, ...customPatterns] : undefined;
89
+ emitAgentFilePlanProgress(options);
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  const files = await listProjectFiles(options.root, patterns, discoveryOptions);
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  return {
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  files,
package/dist/agent/session.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/indexer/build-index.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"build-index.d.ts","sourceRoot":"","sources":["../../src/indexer/build-index.ts"],"names":[],"mappings":"AAuFA,OAAO,EACL,KAAK,YAAY,EAEjB,KAAK,gBAAgB,EAErB,KAAK,uBAAuB,EAI5B,KAAK,YAAY,EAIlB,MAAM,YAAY,CAAC;AAykCpB;;;;;;;GAOG;AACH,wBAAsB,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,YAAY,GAAG,OAAO,CAAC,YAAY,CAAC,CAEvG;AAED;;;;;;GAMG;AACH,wBAAsB,0BAA0B,CAC9C,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,MAAM,EAAE,EACpB,IAAI,CAAC,EAAE,YAAY,GAClB,OAAO,CAAC,YAAY,CAAC,CAgBvB;AA4BD;;;;;;GAMG;AACH,wBAAsB,4BAA4B,CAChD,WAAW,EAAE,MAAM,EACnB,IAAI,CAAC,EAAE,uBAAuB,GAC7B,OAAO,CAAC,YAAY,CAAC,CA8sBvB;AAED,wBAAsB,eAAe,CAAC,WAAW,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,uBAAuB,GAAG,OAAO,CAAC,gBAAgB,CAAC,CA8IpH"}
1
+ {"version":3,"file":"build-index.d.ts","sourceRoot":"","sources":["../../src/indexer/build-index.ts"],"names":[],"mappings":"AAuFA,OAAO,EACL,KAAK,YAAY,EAEjB,KAAK,gBAAgB,EAErB,KAAK,uBAAuB,EAI5B,KAAK,YAAY,EAIlB,MAAM,YAAY,CAAC;AA6lCpB;;;;;;;GAOG;AACH,wBAAsB,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,YAAY,GAAG,OAAO,CAAC,YAAY,CAAC,CAEvG;AAED;;;;;;GAMG;AACH,wBAAsB,0BAA0B,CAC9C,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,MAAM,EAAE,EACpB,IAAI,CAAC,EAAE,YAAY,GAClB,OAAO,CAAC,YAAY,CAAC,CAgBvB;AA4BD;;;;;;GAMG;AACH,wBAAsB,4BAA4B,CAChD,WAAW,EAAE,MAAM,EACnB,IAAI,CAAC,EAAE,uBAAuB,GAC7B,OAAO,CAAC,YAAY,CAAC,CAmwBvB;AAED,wBAAsB,eAAe,CAAC,WAAW,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,uBAAuB,GAAG,OAAO,CAAC,gBAAgB,CAAC,CA8IpH"}
package/dist/indexer/build-index.js CHANGED
@@ -392,6 +392,17 @@ function emitIndexLifecycleProgress(opts, phase, mode, total, elapsedMs) {
392
392
  ...(elapsedMs !== undefined ? { elapsedMs } : {}),
393
393
  });
394
394
  }
395
+ function emitIndexCheckStart(opts, activity = "Checking project index") {
396
+ opts?.onProgress?.({
397
+ type: "progress",
398
+ phase: "start",
399
+ mode: "check",
400
+ message: activity,
401
+ activity,
402
+ current: 0,
403
+ total: 0,
404
+ });
405
+ }
395
406
  function emitIndexCheckActivity(opts, activity, current = 0, total = 0) {
396
407
  opts?.onProgress?.({
397
408
  type: "progress",
@@ -853,6 +864,7 @@ async function buildIndexFromFileListShared(projectRoot, rawFiles, opts, helperO
853
864
  }
854
865
  }
855
866
  async function buildProjectIndexWithManifestOptions(projectRoot, opts, helperOpts) {
867
+ const timings = opts?.report ? (opts.report.timings ??= {}) : undefined;
856
868
  await initializeFileIdentityCaseSensitivity(projectRoot);
857
869
  try {
858
870
  const useDiskCache = (opts?.cache ?? "off") === "disk";
@@ -864,12 +876,15 @@ async function buildProjectIndexWithManifestOptions(projectRoot, opts, helperOpt
864
876
  // The manifest records the project-root directory mtime alongside symlink hints. A changed
865
877
  // root mtime triggers the cheap full-tree probe, while strict modes always probe.
866
878
  const wantsMaxSymlinkCorrectness = !!opts?.cacheStrict || !!opts?.cacheVerify;
867
- const symlinkHintManifest = helperOpts?.ignoreExistingManifest || wantsMaxSymlinkCorrectness || !useDiskCache
868
- ? null
869
- : await loadManifest(projectRoot, opts);
879
+ const symlinkHintManifest = !helperOpts?.ignoreExistingManifest && !wantsMaxSymlinkCorrectness && useDiskCache
880
+ ? await loadManifest(projectRoot, opts)
881
+ : null;
870
882
  const rootMtime = symlinkHintManifest ? (await fsp.stat(projectRoot)).mtimeMs : undefined;
871
883
  const symlinkHintIsFresh = symlinkHintManifest?.symlinkDirectoriesRootMtimeMs !== undefined &&
872
884
  rootMtime === symlinkHintManifest.symlinkDirectoriesRootMtimeMs;
885
+ if (!helperOpts?.reportDiscoveryProgress && !symlinkHintIsFresh) {
886
+ emitIndexCheckStart(opts, "Discovering source files");
887
+ }
873
888
  const knownSymlinkDirectories = symlinkHintIsFresh ? symlinkHintManifest?.symlinkDirectories : undefined;
874
889
  let discoveredSymlinkDirectories = knownSymlinkDirectories;
875
890
  const onSymlinkDirectoriesDiscovered = (directories) => {
@@ -888,6 +903,7 @@ async function buildProjectIndexWithManifestOptions(projectRoot, opts, helperOpt
888
903
  // Git a second time.
889
904
  if (helperOpts?.reportDiscoveryProgress)
890
905
  emitIndexCheckActivity(opts, "Discovering source files");
906
+ const sourceDiscoveryStart = performance.now();
891
907
  const discoveredFiles = await listProjectFilesWithGitCandidates(projectRoot, projectPatternsForLanguageExtensions(opts), {
892
908
  ...opts?.discovery,
893
909
  ...(opts?.logLevel ? { logLevel: opts.logLevel } : {}),
@@ -896,6 +912,8 @@ async function buildProjectIndexWithManifestOptions(projectRoot, opts, helperOpt
896
912
  onGitCandidatesDiscovered,
897
913
  ...(onDiscoveryProgress ? { onDiscoveryProgress } : {}),
898
914
  });
915
+ if (timings)
916
+ timings.sourceDiscoveryMs = Math.round(performance.now() - sourceDiscoveryStart);
899
917
  const additionalFileCandidates = await normalizeIndexedFileInputsWithinRoot(projectRoot, opts?.additionalFiles ?? [], "Additional index file");
900
918
  const additionalFileExistence = await probePathExistence(additionalFileCandidates, buildConcurrency(opts));
901
919
  const additionalFiles = additionalFileCandidates.filter((file) => additionalFileExistence.get(file));
@@ -904,12 +922,15 @@ async function buildProjectIndexWithManifestOptions(projectRoot, opts, helperOpt
904
922
  const transientFiles = additionalFiles.filter((file) => !discoveredFileSet.has(file));
905
923
  if (helperOpts?.reportDiscoveryProgress)
906
924
  emitIndexCheckActivity(opts, "Discovering project metadata");
925
+ const metadataDiscoveryStart = performance.now();
907
926
  const projectFiles = await discoverProjectFilesWithGitCandidates(projectRoot, {
908
927
  ...(opts?.logLevel ? { logLevel: opts.logLevel } : {}),
909
928
  ...(discoveredSymlinkDirectories !== undefined ? { knownSymlinkDirectories: discoveredSymlinkDirectories } : {}),
910
929
  ...(discoveredGitCandidates !== undefined ? { knownGitCandidates: discoveredGitCandidates } : {}),
911
930
  ...(onDiscoveryProgress ? { onDiscoveryProgress } : {}),
912
931
  });
932
+ if (timings)
933
+ timings.metadataDiscoveryMs = Math.round(performance.now() - metadataDiscoveryStart);
913
934
  return await buildIndexFromFileListShared(projectRoot, files, opts, {
914
935
  manifestMode: useDiskCache ? "read-write" : "off",
915
936
  warnNoFilesMessage: `Warning: No files found in project root: ${projectRoot}. Check codegraph.config.json globs and CLI --include-glob/--ignore-glob filters. Diagnostic: codegraph doctor`,
@@ -998,6 +1019,7 @@ export async function buildProjectIndexIncremental(projectRoot, opts) {
998
1019
  if (strictIncremental && graphOptions.fast)
999
1020
  graphOptions.fast = false;
1000
1021
  const { normalizedProjectRoot, report, timings, totalStart, cacheMode, cacheEnabled, onFallbackImportExtraction } = createIndexBuildRunState(projectRoot, opts, graphOptions);
1022
+ const discoveryTimings = opts?.report ? (opts.report.timings ??= {}) : undefined;
1001
1023
  let checkProgressActive = false;
1002
1024
  const startCheckProgress = () => {
1003
1025
  if (checkProgressActive)
@@ -1108,15 +1130,35 @@ export async function buildProjectIndexIncremental(projectRoot, opts) {
1108
1130
  // covers ordinary new-commit history when the working tree is clean at the new HEAD.
1109
1131
  const shouldDiffAgainstWorkingTree = !hasExplicitGitRange && gitAvailable && !!manifest.lastCommit;
1110
1132
  const canReuseReconciliation = opts?.reconciledManifestUpdatedAt === manifest.updatedAt;
1133
+ let sourceDiscoveryMs = 0;
1134
+ let sourceDiscoveryPerformed = false;
1135
+ const measureSourceDiscovery = async (operation) => {
1136
+ if (!discoveryTimings || opts?.filesAreProjectScope)
1137
+ return await operation();
1138
+ sourceDiscoveryPerformed = true;
1139
+ const start = performance.now();
1140
+ try {
1141
+ return await operation();
1142
+ }
1143
+ finally {
1144
+ sourceDiscoveryMs += performance.now() - start;
1145
+ }
1146
+ };
1111
1147
  let manifestDiffFiles = [];
1112
1148
  if (shouldDiffAgainstWorkingTree) {
1113
1149
  try {
1114
- manifestDiffFiles =
1115
- (canReuseReconciliation ? opts?.reconciledWorkingTreeDiffFiles : undefined) ??
1116
- (await listChangedFiles(projectRoot, {
1117
- base: manifest.lastCommit,
1118
- head: "WORKTREE",
1119
- }));
1150
+ const reconciledWorkingTreeDiffFiles = canReuseReconciliation
1151
+ ? opts?.reconciledWorkingTreeDiffFiles
1152
+ : undefined;
1153
+ if (reconciledWorkingTreeDiffFiles !== undefined) {
1154
+ manifestDiffFiles = reconciledWorkingTreeDiffFiles;
1155
+ }
1156
+ else {
1157
+ manifestDiffFiles = await measureSourceDiscovery(() => listChangedFiles(projectRoot, {
1158
+ base: manifest.lastCommit,
1159
+ head: "WORKTREE",
1160
+ }));
1161
+ }
1120
1162
  }
1121
1163
  catch (error) {
1122
1164
  if (!isMissingGitRevisionError(error))
@@ -1163,7 +1205,10 @@ export async function buildProjectIndexIncremental(projectRoot, opts) {
1163
1205
  const previousTransientFiles = sanitizeManifestTransientFilesForRoot(projectRoot, projectRoot, manifest.transientFiles).filter((file) => Object.hasOwn(trackedEntries, file));
1164
1206
  const previousTransientFileSet = new Set(previousTransientFiles);
1165
1207
  const needsGitScan = !!opts?.gitBase || !!opts?.changedSince;
1166
- const gitFiles = needsGitScan ? await listChangedFiles(projectRoot, buildIncrementalGitDiffOptions(opts)) : [];
1208
+ let gitFiles = [];
1209
+ if (needsGitScan) {
1210
+ gitFiles = await measureSourceDiscovery(() => listChangedFiles(projectRoot, buildIncrementalGitDiffOptions(opts)));
1211
+ }
1167
1212
  // New files that were never committed, staged, or passed explicitly have no tracked
1168
1213
  // manifest entry and no working-tree-diff record, so they would otherwise stay
1169
1214
  // invisible to an incremental build until the next full rebuild. Detecting them via
@@ -1183,9 +1228,13 @@ export async function buildProjectIndexIncremental(projectRoot, opts) {
1183
1228
  let discoveredGitCandidates;
1184
1229
  if (canUseIncrementalDiscoveryFastPath(gitAvailable, opts?.cacheStrict)) {
1185
1230
  try {
1186
- untrackedFiles =
1187
- (canReuseReconciliation ? opts?.reconciledUntrackedFiles : undefined) ??
1188
- (await listUntrackedProjectFiles(projectRoot, opts?.discovery, gitAvailable));
1231
+ const reconciledUntrackedFiles = canReuseReconciliation ? opts?.reconciledUntrackedFiles : undefined;
1232
+ if (reconciledUntrackedFiles !== undefined) {
1233
+ untrackedFiles = reconciledUntrackedFiles;
1234
+ }
1235
+ else {
1236
+ untrackedFiles = await measureSourceDiscovery(() => listUntrackedProjectFiles(projectRoot, opts?.discovery, gitAvailable));
1237
+ }
1189
1238
  }
1190
1239
  catch (error) {
1191
1240
  if (manifestReport) {
@@ -1200,7 +1249,7 @@ export async function buildProjectIndexIncremental(projectRoot, opts) {
1200
1249
  }
1201
1250
  }
1202
1251
  else if (!opts?.filesAreProjectScope) {
1203
- rediscoveredFiles = await listProjectFilesWithGitCandidates(projectRoot, projectPatternsForLanguageExtensions(opts), {
1252
+ rediscoveredFiles = await measureSourceDiscovery(() => listProjectFilesWithGitCandidates(projectRoot, projectPatternsForLanguageExtensions(opts), {
1204
1253
  ...opts?.discovery,
1205
1254
  ...(opts?.logLevel ? { logLevel: opts.logLevel } : {}),
1206
1255
  ...(!opts?.cacheStrict && manifest.symlinkDirectories !== undefined
@@ -1209,7 +1258,10 @@ export async function buildProjectIndexIncremental(projectRoot, opts) {
1209
1258
  onGitCandidatesDiscovered: (candidates) => {
1210
1259
  discoveredGitCandidates = candidates;
1211
1260
  },
1212
- });
1261
+ }));
1262
+ }
1263
+ if (discoveryTimings && sourceDiscoveryPerformed) {
1264
+ discoveryTimings.sourceDiscoveryMs = Math.round(sourceDiscoveryMs);
1213
1265
  }
1214
1266
  const candidateFiles = [
1215
1267
  ...explicitFiles,
@@ -1314,10 +1366,19 @@ export async function buildProjectIndexIncremental(projectRoot, opts) {
1314
1366
  if (!snapshotLoad)
1315
1367
  return null;
1316
1368
  const snapshot = snapshotLoad.index;
1317
- snapshot.projectFiles ??= await discoverProjectFilesWithGitCandidates(projectRoot, {
1318
- ...(opts?.logLevel ? { logLevel: opts.logLevel } : {}),
1319
- ...(discoveredGitCandidates !== undefined ? { knownGitCandidates: discoveredGitCandidates } : {}),
1320
- });
1369
+ // The early Git fast path does not stat tracked files. Its persisted mtime:size
1370
+ // values can therefore be stale after a byte-identical rewrite; lifecycle must
1371
+ // re-stat until the validated path below replaces every signature.
1372
+ snapshot.manifestSignaturesFresh = false;
1373
+ if (snapshot.projectFiles === undefined) {
1374
+ const metadataDiscoveryStart = performance.now();
1375
+ snapshot.projectFiles = await discoverProjectFilesWithGitCandidates(projectRoot, {
1376
+ ...(opts?.logLevel ? { logLevel: opts.logLevel } : {}),
1377
+ ...(discoveredGitCandidates !== undefined ? { knownGitCandidates: discoveredGitCandidates } : {}),
1378
+ });
1379
+ if (discoveryTimings)
1380
+ discoveryTimings.metadataDiscoveryMs = Math.round(performance.now() - metadataDiscoveryStart);
1381
+ }
1321
1382
  if (opts?.cache) {
1322
1383
  snapshot.cacheMode = opts.cache;
1323
1384
  snapshot.cacheRootDir = cacheRoot(projectRoot, opts);
@@ -1646,6 +1707,20 @@ export async function buildProjectIndexIncremental(projectRoot, opts) {
1646
1707
  edges: [],
1647
1708
  });
1648
1709
  }
1710
+ // A Git blob match proves source bytes, not mtime. Refresh every retained
1711
+ // entry from the stat signatures computed above before declaring lifecycle
1712
+ // signatures fresh.
1713
+ for (const [file, entry] of manifestEntries) {
1714
+ const signature = fileSignatures.get(file);
1715
+ if (!signature)
1716
+ continue;
1717
+ const { gitSig: _previousGitSig, ...entryWithoutGitSig } = entry;
1718
+ manifestEntries.set(file, {
1719
+ ...entryWithoutGitSig,
1720
+ sig: signature.sig,
1721
+ ...(signature.gitSig ? { gitSig: signature.gitSig } : {}),
1722
+ });
1723
+ }
1649
1724
  await writeIndexManifestSnapshot({
1650
1725
  projectRoot,
1651
1726
  opts,