@luomus/laji-schema 2.0.405 → 2.0.407

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@@ -2,8 +2,8 @@
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  Object.defineProperty(exports, "__esModule", { value: true });
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  exports.MYMothSamplingMethodEnum = exports.MYInvasiveControlMethodsEnum = exports.MYHabitatAttributesEnum = exports.MYHabitatEnum = exports.MYGeoreferenceSources = exports.MYGatheringTypeEnum = exports.MYForestVegetationZones = exports.MYCoordinateSystems = exports.MYCoordinateSources = exports.MYBatHabitatEnum = exports.MFPTypeEnum = exports.MHLViewerTypeEnum = exports.MHLResultServiceTypeEnum = exports.MHLRestrictAccessEnum = exports.MHLPrintTypeEnum = exports.MNPTagEnum = exports.MZLanguageEnum = exports.MHLCategoryEnum = exports.MYEventType = exports.MKVEndangermentReasonEnum = exports.MYVerificationStatuses = exports.MYStatuses = exports.MYPreservations = exports.MYDataOriginEnum = exports.GXDatasetTypeEnum = exports.MYCompleteListTypeEnum = exports.MYPublicationTermsEnum = exports.MYMetadataStatuses = exports.MYIntellectualRightsEnum = exports.MYHierarchyTypeEnum = exports.MYDataQualityEnum = exports.MYCollectionTypes = exports.MYCollectionQualityEnum = exports.MXSecureLevels = exports.MABirdSongRecognitionSkillLevelEnum = exports.MZPublicityRestrictionsEnum = exports.MZIntellectualRightsEnum = exports.MYSexes = exports.MYPlantLifeStageEnum = exports.MYLifeStages = exports.MMTypeEnum = exports.MMLuomusIntellectualRightsEnum = exports.MLAreaTypeEnum = exports.MANTypeEnum = exports.MANLineTransectAnnotationEnum = exports.MYInvasiveControlEffectivenessEnum = exports.MANCensusAnnotationEnum = exports.MMANRequiredRolesEnum = exports.MYAtlasCodeEnum = exports.MANAnnotationClassEnum = void 0;
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  exports.MARoles = exports.HRAPermitTypeEnum = exports.HRAPermitStatusEnum = exports.MOSABBREVIATIONExplanations = exports.MHNNotificationReasonEnum = exports.MNPPriorityEnum = exports.MNPAccessibilityEnum = exports.MYNestTypeEnum = exports.MYNestSizeEnum = exports.MYLineTransectRouteFieldTypeEnum = exports.MXTypeOfOccurrenceEnum = exports.MKVStateEnum = exports.MXIucnStatuses = exports.MKVReasonForStatusChangeEnum = exports.MKVPossiblyREEnum = exports.MKVExternalPopulationImpactOnRedListStatusEnum = exports.MKVDdReasonEnum = exports.KETypes = exports.KEStates = exports.KEPublicities = exports.MMSideEnum = exports.MXTaxonRankEnum = exports.MYInfraRanks = exports.MYIdentificationBasisEnum = exports.MYDetMethodEnum = exports.MKVHabitatSpecificTypeEnum = exports.MKVHabitatEnum = exports.WBCWindEnum = exports.WBCWayOfTravelEnum = exports.WBCWaterbodiesEnum = exports.WBCVisibilityEnum = exports.WBCTypeOfSnowCoverEnum = exports.WBCSnowCoverEnum = exports.WBCSnowAndIceOnTreesEnum = exports.WBCBerriesAndConesEnum = exports.WBCIceCoverEnum = exports.WBCCloudAndRainEnum = exports.WBCSpeciesAbundanceEnum = exports.MYWaterbirdHabitatEnum = exports.MYWaterbirdCensusPeriodEnum = exports.MYSykeButterFlyCensusWindEnum = exports.MYPointCountHabitatEnum = exports.MYLolifeSiteClassificationEnum = exports.MYBatCollectorEnum = exports.MYRainIntensityEnum = exports.MYMachineAssistanceEnum = exports.MYCloudCoverOktaEnum = exports.MYArtificialLightEnum = exports.MYSamplingMethods = exports.MYPredominantTreeEnum = void 0;
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- exports.MYDistanceEnum = exports.MYBirdPlumageEnum = exports.MYBirdAgeEnum = exports.MYBatBehaviorEnum = exports.MYAbundanceUnitEnum = exports.MYTypeVerifications = exports.MYTypeStatuses = exports.HRABStatusEnum = exports.HRABItemTypeEnum = exports.HRAASentByEnum = exports.HRAAEventTypeEnum = exports.HRATransactionTypes = exports.HRATransactionStatuses = exports.HRASentTypes = exports.HRAResourceImportedEnum = exports.HRALocalDepartments = exports.HRAGeneticResourceTypeEnum = exports.HRAAvailableForGeneticResearchEnum = exports.TDFTypeEnum = exports.MYRecordBases = exports.TDFStatisticalMethodEnum = exports.TDFUnitOfMeasurementEnum = exports.TDFRangeEnum = exports.MITaxonInteractionEnum = exports.MYTaxonCensusEnum = exports.MXOccurrenceInFinlandEnum = exports.MXTaxonSetEnum = exports.MXInvasiveSpeciesEstablishmentStatuses = exports.MXInvasiveSpeciesCategories = exports.MXAdminStatusEnum = exports.HBEInvasiveSpeciesMainGroups = exports.MMANTypeEnum = exports.HRXEventTypeEnum = exports.HRXTypeEnum = exports.HRXTransportMethodEnum = exports.HRXStatusEnum = exports.HRXResourceImportedEnum = exports.HRXGeneticResourceTypeEnum = exports.HRXAvailableForGeneticResearchEnum = exports.MFQualityCheckMethodEnum = exports.MFQualityEnum = exports.MFPreparationTypeEnum = exports.MFMaterialEnum = exports.MFIndividualsInPreparationEnum = exports.MFElutionMediumEnum = exports.MAFinnishBirdSongRecognitionSkillLevelEnum = exports.MABirdwatchingActivityLevelEnum = exports.MFPreparationProcessEnum = exports.MFPreparationMaterialsEnum = exports.MARoleKotkaEnum = void 0;
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- exports.MYWaterbirdPairCountOpinionReasoningEnum = exports.MYWaterbirdJuvenileAgeClassEnum = exports.MYWaterbirdFemaleEnum = exports.MYLolifeNestTreeEnum = exports.MYLolifeDroppingsTypeEnum = exports.MYLolifeDroppingsQualityEnum = exports.MYLolifeDroppingsCountEnum = exports.MYLineTransectObsTypeEnum = exports.MYGlowWormMicrohabitatEnum = exports.MYDetOnSiteEnum = exports.MYWildEnum = exports.MYTaxonConfidenceEnum = exports.MYTasteEnum = exports.MYSubstrateTreeClassificationEnum = exports.MYSubstrateDecayStageEnum = exports.MYSubstrateEnum = exports.MYSmellEnum = exports.MYSeedMorphologyEnum = exports.MYSeedMaturityEnum = exports.MYRecordPartsEnum = exports.MYProvenanceEnum = exports.MYPlantStatusCodeEnum = exports.MYObservationStatusEnum = exports.MYNativeStatusEnum = exports.MYMovingDirectionEnum = exports.MYMicrobiologicalRiskGroupEnum = exports.MYIndirectObservationTypeEnum = exports.MYFruitTypeEnum = exports.MYEpochOrSeries = void 0;
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+ exports.MYBirdPlumageEnum = exports.MYBirdAgeEnum = exports.MYBatBehaviorEnum = exports.MYAbundanceUnitEnum = exports.MYTypeVerifications = exports.MYTypeStatuses = exports.HRABStatusEnum = exports.HRABItemTypeEnum = exports.HRAASentByEnum = exports.HRAAEventTypeEnum = exports.HRATransactionTypes = exports.HRATransactionStatuses = exports.HRASentTypes = exports.HRAResourceImportedEnum = exports.HRALocalDepartments = exports.HRAGeneticResourceTypeEnum = exports.HRAAvailableForGeneticResearchEnum = exports.TDFTypeEnum = exports.MYRecordBases = exports.TDFStatisticalMethodEnum = exports.TDFUnitOfMeasurementEnum = exports.TDFRangeEnum = exports.MXSequenceLocusEnum = exports.MITaxonInteractionEnum = exports.MYTaxonCensusEnum = exports.MXOccurrenceInFinlandEnum = exports.MXTaxonSetEnum = exports.MXInvasiveSpeciesEstablishmentStatuses = exports.MXInvasiveSpeciesCategories = exports.MXAdminStatusEnum = exports.HBEInvasiveSpeciesMainGroups = exports.MMANTypeEnum = exports.HRXEventTypeEnum = exports.HRXTypeEnum = exports.HRXTransportMethodEnum = exports.HRXStatusEnum = exports.HRXResourceImportedEnum = exports.HRXGeneticResourceTypeEnum = exports.HRXAvailableForGeneticResearchEnum = exports.MFQualityCheckMethodEnum = exports.MFQualityEnum = exports.MFPreparationTypeEnum = exports.MFMaterialEnum = exports.MFIndividualsInPreparationEnum = exports.MFElutionMediumEnum = exports.MAFinnishBirdSongRecognitionSkillLevelEnum = exports.MABirdwatchingActivityLevelEnum = exports.MFPreparationProcessEnum = exports.MFPreparationMaterialsEnum = exports.MARoleKotkaEnum = void 0;
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+ exports.MYWaterbirdPairCountOpinionReasoningEnum = exports.MYWaterbirdJuvenileAgeClassEnum = exports.MYWaterbirdFemaleEnum = exports.MYLolifeNestTreeEnum = exports.MYLolifeDroppingsTypeEnum = exports.MYLolifeDroppingsQualityEnum = exports.MYLolifeDroppingsCountEnum = exports.MYLineTransectObsTypeEnum = exports.MYGlowWormMicrohabitatEnum = exports.MYDetOnSiteEnum = exports.MYWildEnum = exports.MYTaxonConfidenceEnum = exports.MYTasteEnum = exports.MYSubstrateTreeClassificationEnum = exports.MYSubstrateDecayStageEnum = exports.MYSubstrateEnum = exports.MYSmellEnum = exports.MYSeedMorphologyEnum = exports.MYSeedMaturityEnum = exports.MYRecordPartsEnum = exports.MYProvenanceEnum = exports.MYPlantStatusCodeEnum = exports.MYObservationStatusEnum = exports.MYNativeStatusEnum = exports.MYMovingDirectionEnum = exports.MYMicrobiologicalRiskGroupEnum = exports.MYIndirectObservationTypeEnum = exports.MYFruitTypeEnum = exports.MYEpochOrSeries = exports.MYDistanceEnum = void 0;
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  var MANAnnotationClassEnum;
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  (function (MANAnnotationClassEnum) {
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  MANAnnotationClassEnum["empty"] = "";
@@ -1935,6 +1935,17 @@ var MITaxonInteractionEnum;
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  MITaxonInteractionEnum["taxonInteractionEctoparasitism"] = "MI.taxonInteractionEctoparasitism";
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  MITaxonInteractionEnum["taxonInteractionEndoparasitism"] = "MI.taxonInteractionEndoparasitism";
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  })(MITaxonInteractionEnum = exports.MITaxonInteractionEnum || (exports.MITaxonInteractionEnum = {}));
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+ var MXSequenceLocusEnum;
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+ (function (MXSequenceLocusEnum) {
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+ MXSequenceLocusEnum["empty"] = "";
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+ MXSequenceLocusEnum["MX.sequenceLocusITS"] = "MX.sequenceLocusITS";
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+ MXSequenceLocusEnum["MX.sequenceLocusCOI"] = "MX.sequenceLocusCOI";
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+ MXSequenceLocusEnum["MX.sequenceLocusMatK"] = "MX.sequenceLocusMatK";
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+ MXSequenceLocusEnum["MX.sequenceLocusRbcL"] = "MX.sequenceLocusRbcL";
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+ MXSequenceLocusEnum["MX.sequenceLocusRpb2"] = "MX.sequenceLocusRpb2";
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+ MXSequenceLocusEnum["MX.sequenceLocusTef1"] = "MX.sequenceLocusTef1";
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+ MXSequenceLocusEnum["MX.sequenceLocusHsp90"] = "MX.sequenceLocusHsp90";
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+ })(MXSequenceLocusEnum = exports.MXSequenceLocusEnum || (exports.MXSequenceLocusEnum = {}));
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  var TDFRangeEnum;
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  (function (TDFRangeEnum) {
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  TDFRangeEnum["empty"] = "";
@@ -0,0 +1,12 @@
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+ "use strict";
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.TaxonReferenceSequence = void 0;
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+ /* tslint:disable */
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+ /*
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+ * This file was automatically generated.
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+ * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
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+ * and run the command to regenerate this file.
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+ */
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+ class TaxonReferenceSequence {
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+ }
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+ exports.TaxonReferenceSequence = TaxonReferenceSequence;
@@ -11,8 +11,8 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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  exports.IucnRedListEvaluationYear = exports.IucnRedListEvaluation = exports.InformationSystem = exports.InformalTaxonGroup = exports.Individual = exports.Image = exports.Identification = exports.Habitat = exports.GatheringFact = exports.GatheringEvent = exports.Gathering = exports.FormSeason = exports.FormPermissionSingle = exports.FormPermissionPerson = exports.FormPermission = exports.FormOptions = exports.FormNamedPlaceOptions = exports.FormInstructions = exports.FormFooter = exports.Form = exports.Fieldset = exports.Field = exports.Event = exports.Endangerment = exports.DownloadRequest = exports.DocumentIdentification = exports.Document = exports.DeviceIndividual = exports.Device = exports.DateRange = exports.Dataset = exports.DataManagementPlan = exports.DataField = exports.ContentContextDescription = exports.Contact = exports.CompleteList = exports.Collection = exports.ChecklistVersion = exports.Checklist = exports.Branch = exports.BirdSongRecognitionSkillLevel = exports.Audio = exports.Area = exports.AnnotationOccurrence = exports.Annotation = exports.Agent = exports.AdministrativeStatus = exports.Pinkka = exports.Concept = exports.BibliographicResource = void 0;
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- exports.Video = exports.Validator = exports.UnitOfMeasurement = exports.UnitGathering = exports.UnitFact = exports.Unit = exports.TypeSpecimen = exports.Translation = exports.TransactionItem = exports.TransactionEvent = exports.Transaction = exports.TraitValue = exports.TraitSubject = exports.TraitSearchTaxon = exports.TraitSearchRow = exports.TraitSearchDataset = exports.TraitGroup = exports.TraitEnumValue = exports.Trait = exports.Term = exports.TaxonSet = exports.TaxonInteraction = exports.TaxonGroupIucnEditors = exports.TaxonConcept = exports.TaxonCensus = exports.Taxon = exports.Tag = exports.SubUnit = exports.SpecimenTransactionEvent = exports.SpecimenTransaction = exports.SatelliteTrackingProject = exports.Sample = exports.Reserve = exports.RegionalStatus = exports.Publication = exports.Profile = exports.Preparation = exports.Person = exports.Permit = exports.Pdf = exports.Organization = exports.Occurrence = exports.Notification = exports.News = exports.NamedPlace = exports.Multimedia = exports.Model = exports.Measurement = exports.LineTransectNest = exports.IucnRedListTaxonGroup = void 0;
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- exports.ListResponse = void 0;
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+ exports.Validator = exports.UnitOfMeasurement = exports.UnitGathering = exports.UnitFact = exports.Unit = exports.TypeSpecimen = exports.Translation = exports.TransactionItem = exports.TransactionEvent = exports.Transaction = exports.TraitValue = exports.TraitSubject = exports.TraitSearchTaxon = exports.TraitSearchRow = exports.TraitSearchDataset = exports.TraitGroup = exports.TraitEnumValue = exports.Trait = exports.Term = exports.TaxonSet = exports.TaxonReferenceSequence = exports.TaxonInteraction = exports.TaxonGroupIucnEditors = exports.TaxonConcept = exports.TaxonCensus = exports.Taxon = exports.Tag = exports.SubUnit = exports.SpecimenTransactionEvent = exports.SpecimenTransaction = exports.SatelliteTrackingProject = exports.Sample = exports.Reserve = exports.RegionalStatus = exports.Publication = exports.Profile = exports.Preparation = exports.Person = exports.Permit = exports.Pdf = exports.Organization = exports.Occurrence = exports.Notification = exports.News = exports.NamedPlace = exports.Multimedia = exports.Model = exports.Measurement = exports.LineTransectNest = exports.IucnRedListTaxonGroup = void 0;
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+ exports.ListResponse = exports.Video = void 0;
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  var BibliographicResource_1 = require("./BibliographicResource");
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  Object.defineProperty(exports, "BibliographicResource", { enumerable: true, get: function () { return BibliographicResource_1.BibliographicResource; } });
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  var Concept_1 = require("./Concept");
@@ -171,6 +171,8 @@ var TaxonGroupIucnEditors_1 = require("./TaxonGroupIucnEditors");
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  Object.defineProperty(exports, "TaxonGroupIucnEditors", { enumerable: true, get: function () { return TaxonGroupIucnEditors_1.TaxonGroupIucnEditors; } });
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  var TaxonInteraction_1 = require("./TaxonInteraction");
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  Object.defineProperty(exports, "TaxonInteraction", { enumerable: true, get: function () { return TaxonInteraction_1.TaxonInteraction; } });
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+ var TaxonReferenceSequence_1 = require("./TaxonReferenceSequence");
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+ Object.defineProperty(exports, "TaxonReferenceSequence", { enumerable: true, get: function () { return TaxonReferenceSequence_1.TaxonReferenceSequence; } });
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  var TaxonSet_1 = require("./TaxonSet");
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  Object.defineProperty(exports, "TaxonSet", { enumerable: true, get: function () { return TaxonSet_1.TaxonSet; } });
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  var Term_1 = require("./Term");
@@ -0,0 +1,2 @@
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+ "use strict";
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+ Object.defineProperty(exports, "__esModule", { value: true });
@@ -11,8 +11,8 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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  exports.isInformationSystem = exports.isInformalTaxonGroup = exports.isIndividual = exports.isImage = exports.isIdentification = exports.isHabitat = exports.isGatheringFact = exports.isGatheringEvent = exports.isGathering = exports.isFormSeason = exports.isFormPermissionSingle = exports.isFormPermissionPerson = exports.isFormPermission = exports.isFormOptions = exports.isFormNamedPlaceOptions = exports.isFormInstructions = exports.isFormFooter = exports.isForm = exports.isFieldset = exports.isField = exports.isEvent = exports.isEndangerment = exports.isDownloadRequest = exports.isDocumentIdentification = exports.isDocument = exports.isDeviceIndividual = exports.isDevice = exports.isDateRange = exports.isDataset = exports.isDataManagementPlan = exports.isDataField = exports.isContentContextDescription = exports.isContact = exports.isCompleteList = exports.isCollection = exports.isChecklistVersion = exports.isChecklist = exports.isBranch = exports.isBirdSongRecognitionSkillLevel = exports.isAudio = exports.isArea = exports.isAnnotationOccurrence = exports.isAnnotation = exports.isAgent = exports.isAdministrativeStatus = exports.isPinkka = exports.isConcept = exports.isBibliographicResource = exports.isLangObject = exports.isLang = void 0;
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- exports.isUnitOfMeasurement = exports.isUnitGathering = exports.isUnitFact = exports.isUnit = exports.isTypeSpecimen = exports.isTranslation = exports.isTransactionItem = exports.isTransactionEvent = exports.isTransaction = exports.isTraitValue = exports.isTraitSubject = exports.isTraitSearchTaxon = exports.isTraitSearchRow = exports.isTraitSearchDataset = exports.isTraitGroup = exports.isTraitEnumValue = exports.isTrait = exports.isTerm = exports.isTaxonSet = exports.isTaxonInteraction = exports.isTaxonGroupIucnEditors = exports.isTaxonConcept = exports.isTaxonCensus = exports.isTaxon = exports.isTag = exports.isSubUnit = exports.isSpecimenTransactionEvent = exports.isSpecimenTransaction = exports.isSatelliteTrackingProject = exports.isSample = exports.isReserve = exports.isRegionalStatus = exports.isPublication = exports.isProfile = exports.isPreparation = exports.isPerson = exports.isPermit = exports.isPdf = exports.isOrganization = exports.isOccurrence = exports.isNotification = exports.isNews = exports.isNamedPlace = exports.isMultimedia = exports.isModel = exports.isMeasurement = exports.isLineTransectNest = exports.isIucnRedListTaxonGroup = exports.isIucnRedListEvaluationYear = exports.isIucnRedListEvaluation = void 0;
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- exports.isVideo = exports.isValidator = void 0;
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+ exports.isUnitGathering = exports.isUnitFact = exports.isUnit = exports.isTypeSpecimen = exports.isTranslation = exports.isTransactionItem = exports.isTransactionEvent = exports.isTransaction = exports.isTraitValue = exports.isTraitSubject = exports.isTraitSearchTaxon = exports.isTraitSearchRow = exports.isTraitSearchDataset = exports.isTraitGroup = exports.isTraitEnumValue = exports.isTrait = exports.isTerm = exports.isTaxonSet = exports.isTaxonReferenceSequence = exports.isTaxonInteraction = exports.isTaxonGroupIucnEditors = exports.isTaxonConcept = exports.isTaxonCensus = exports.isTaxon = exports.isTag = exports.isSubUnit = exports.isSpecimenTransactionEvent = exports.isSpecimenTransaction = exports.isSatelliteTrackingProject = exports.isSample = exports.isReserve = exports.isRegionalStatus = exports.isPublication = exports.isProfile = exports.isPreparation = exports.isPerson = exports.isPermit = exports.isPdf = exports.isOrganization = exports.isOccurrence = exports.isNotification = exports.isNews = exports.isNamedPlace = exports.isMultimedia = exports.isModel = exports.isMeasurement = exports.isLineTransectNest = exports.isIucnRedListTaxonGroup = exports.isIucnRedListEvaluationYear = exports.isIucnRedListEvaluation = void 0;
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+ exports.isVideo = exports.isValidator = exports.isUnitOfMeasurement = void 0;
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  __exportStar(require("./Enums"), exports);
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  function isLang(value) {
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  return typeof value === 'string' && ['en', 'fi', 'sv'].includes(value);
@@ -341,6 +341,10 @@ function isTaxonInteraction(data) {
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  return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MI.taxonInteraction');
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  }
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  exports.isTaxonInteraction = isTaxonInteraction;
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+ function isTaxonReferenceSequence(data) {
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+ return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MX.taxonReferenceSequence');
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+ }
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+ exports.isTaxonReferenceSequence = isTaxonReferenceSequence;
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  function isTaxonSet(data) {
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  return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MX.taxonSet');
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  }
@@ -1802,6 +1802,16 @@ export enum MITaxonInteractionEnum {
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  "taxonInteractionEctoparasitism" = "MI.taxonInteractionEctoparasitism",
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  "taxonInteractionEndoparasitism" = "MI.taxonInteractionEndoparasitism"
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  }
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+ export enum MXSequenceLocusEnum {
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+ "empty" = "",
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+ "MX.sequenceLocusITS" = "MX.sequenceLocusITS",
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+ "MX.sequenceLocusCOI" = "MX.sequenceLocusCOI",
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+ "MX.sequenceLocusMatK" = "MX.sequenceLocusMatK",
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+ "MX.sequenceLocusRbcL" = "MX.sequenceLocusRbcL",
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+ "MX.sequenceLocusRpb2" = "MX.sequenceLocusRpb2",
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+ "MX.sequenceLocusTef1" = "MX.sequenceLocusTef1",
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+ "MX.sequenceLocusHsp90" = "MX.sequenceLocusHsp90"
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+ }
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  export enum TDFRangeEnum {
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  "empty" = "",
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  "xsd:string" = "xsd:string",
@@ -0,0 +1,27 @@
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+ import { MXSequenceLocusEnum } from './index.dto';
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+
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+ /* tslint:disable */
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+ /*
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+ * This file was automatically generated.
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+ * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
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+ * and run the command to regenerate this file.
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+ */
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+ export class TaxonReferenceSequence {
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+ "@context"?: string;
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+ id?: string;
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+ "@type"?: string;
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+ /**
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+ * Identifier of the external DNA sequence or sequencing record. This is a free-form identifier that may contain identifiers assigned by external sequence repositories or sequencing databases, and it identifies the sequence or sequencing event rather than the specimen itself. Example values: BOLD:ARIGB038-16.COI-5P, GenBank:KX283134
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+ */
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+ externalSequenceID?: string;
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+ sequenceLocus?: MXSequenceLocusEnum;
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+ /**
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+ * Identifier of the specimen from which the reference sequence was obtained or with which the reference sequence is associated. This is a freeform identifier and may contain identifiers from external specimen or sequence databases. Example values: http://id.luomus.fi/GBC.1, http://id.herb.oulu.fi/GAL.32109, BIOUG51784-H10
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+ */
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+ sequenceSpecimenID?: string;
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+ sequenceTaxonID: string;
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+ /**
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+ * DNA sequence stored in FASTA format.
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+ */
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+ sequenceText?: string[];
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+ }
@@ -255,7 +255,7 @@ export class Unit {
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  */
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  seedMorphology?: MYSeedMorphologyEnum;
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  /**
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- * DNA sequence associated with the occurrence, stored in FASTA format.
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+ * DNA sequence stored in FASTA format.
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  */
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  sequenceText?: string[];
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  /**
@@ -78,6 +78,7 @@ export { TaxonCensus } from './TaxonCensus.dto'
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  export { TaxonConcept } from './TaxonConcept.dto'
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  export { TaxonGroupIucnEditors } from './TaxonGroupIucnEditors.dto'
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  export { TaxonInteraction } from './TaxonInteraction.dto'
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+ export { TaxonReferenceSequence } from './TaxonReferenceSequence.dto'
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  export { TaxonSet } from './TaxonSet.dto'
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  export { Term } from './Term.dto'
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  export { Trait } from './Trait.dto'
@@ -1929,6 +1929,17 @@ export var MITaxonInteractionEnum;
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  MITaxonInteractionEnum["taxonInteractionEctoparasitism"] = "MI.taxonInteractionEctoparasitism";
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  MITaxonInteractionEnum["taxonInteractionEndoparasitism"] = "MI.taxonInteractionEndoparasitism";
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  })(MITaxonInteractionEnum || (MITaxonInteractionEnum = {}));
1932
+ export var MXSequenceLocusEnum;
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+ (function (MXSequenceLocusEnum) {
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+ MXSequenceLocusEnum["empty"] = "";
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+ MXSequenceLocusEnum["MX.sequenceLocusITS"] = "MX.sequenceLocusITS";
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+ MXSequenceLocusEnum["MX.sequenceLocusCOI"] = "MX.sequenceLocusCOI";
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+ MXSequenceLocusEnum["MX.sequenceLocusMatK"] = "MX.sequenceLocusMatK";
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+ MXSequenceLocusEnum["MX.sequenceLocusRbcL"] = "MX.sequenceLocusRbcL";
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+ MXSequenceLocusEnum["MX.sequenceLocusRpb2"] = "MX.sequenceLocusRpb2";
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+ MXSequenceLocusEnum["MX.sequenceLocusTef1"] = "MX.sequenceLocusTef1";
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+ MXSequenceLocusEnum["MX.sequenceLocusHsp90"] = "MX.sequenceLocusHsp90";
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+ })(MXSequenceLocusEnum || (MXSequenceLocusEnum = {}));
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  export var TDFRangeEnum;
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  (function (TDFRangeEnum) {
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  TDFRangeEnum["empty"] = "";
@@ -0,0 +1,8 @@
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+ /* tslint:disable */
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+ /*
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+ * This file was automatically generated.
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+ * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
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+ * and run the command to regenerate this file.
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+ */
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+ export class TaxonReferenceSequence {
8
+ }
@@ -77,6 +77,7 @@ export { TaxonCensus } from './TaxonCensus';
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  export { TaxonConcept } from './TaxonConcept';
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  export { TaxonGroupIucnEditors } from './TaxonGroupIucnEditors';
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  export { TaxonInteraction } from './TaxonInteraction';
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+ export { TaxonReferenceSequence } from './TaxonReferenceSequence';
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  export { TaxonSet } from './TaxonSet';
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  export { Term } from './Term';
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  export { Trait } from './Trait';
@@ -0,0 +1 @@
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+ export {};
@@ -245,6 +245,9 @@ export function isTaxonGroupIucnEditors(data) {
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  export function isTaxonInteraction(data) {
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  return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MI.taxonInteraction');
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  }
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+ export function isTaxonReferenceSequence(data) {
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+ return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MX.taxonReferenceSequence');
250
+ }
248
251
  export function isTaxonSet(data) {
249
252
  return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MX.taxonSet');
250
253
  }
@@ -1802,6 +1802,16 @@ export declare enum MITaxonInteractionEnum {
1802
1802
  "taxonInteractionEctoparasitism" = "MI.taxonInteractionEctoparasitism",
1803
1803
  "taxonInteractionEndoparasitism" = "MI.taxonInteractionEndoparasitism"
1804
1804
  }
1805
+ export declare enum MXSequenceLocusEnum {
1806
+ "empty" = "",
1807
+ "MX.sequenceLocusITS" = "MX.sequenceLocusITS",
1808
+ "MX.sequenceLocusCOI" = "MX.sequenceLocusCOI",
1809
+ "MX.sequenceLocusMatK" = "MX.sequenceLocusMatK",
1810
+ "MX.sequenceLocusRbcL" = "MX.sequenceLocusRbcL",
1811
+ "MX.sequenceLocusRpb2" = "MX.sequenceLocusRpb2",
1812
+ "MX.sequenceLocusTef1" = "MX.sequenceLocusTef1",
1813
+ "MX.sequenceLocusHsp90" = "MX.sequenceLocusHsp90"
1814
+ }
1805
1815
  export declare enum TDFRangeEnum {
1806
1816
  "empty" = "",
1807
1817
  "xsd:string" = "xsd:string",
@@ -0,0 +1,20 @@
1
+ import { MXSequenceLocusEnum } from './';
2
+ export declare class TaxonReferenceSequence {
3
+ "@context"?: string;
4
+ id?: string;
5
+ "@type"?: string;
6
+ /**
7
+ * Identifier of the external DNA sequence or sequencing record. This is a free-form identifier that may contain identifiers assigned by external sequence repositories or sequencing databases, and it identifies the sequence or sequencing event rather than the specimen itself. Example values: BOLD:ARIGB038-16.COI-5P, GenBank:KX283134
8
+ */
9
+ externalSequenceID?: string;
10
+ sequenceLocus?: MXSequenceLocusEnum;
11
+ /**
12
+ * Identifier of the specimen from which the reference sequence was obtained or with which the reference sequence is associated. This is a freeform identifier and may contain identifiers from external specimen or sequence databases. Example values: http://id.luomus.fi/GBC.1, http://id.herb.oulu.fi/GAL.32109, BIOUG51784-H10
13
+ */
14
+ sequenceSpecimenID?: string;
15
+ sequenceTaxonID: string;
16
+ /**
17
+ * DNA sequence stored in FASTA format.
18
+ */
19
+ sequenceText?: string[];
20
+ }
@@ -248,7 +248,7 @@ export declare class Unit {
248
248
  */
249
249
  seedMorphology?: MYSeedMorphologyEnum;
250
250
  /**
251
- * DNA sequence associated with the occurrence, stored in FASTA format.
251
+ * DNA sequence stored in FASTA format.
252
252
  */
253
253
  sequenceText?: string[];
254
254
  /**
@@ -77,6 +77,7 @@ export { TaxonCensus } from './TaxonCensus';
77
77
  export { TaxonConcept } from './TaxonConcept';
78
78
  export { TaxonGroupIucnEditors } from './TaxonGroupIucnEditors';
79
79
  export { TaxonInteraction } from './TaxonInteraction';
80
+ export { TaxonReferenceSequence } from './TaxonReferenceSequence';
80
81
  export { TaxonSet } from './TaxonSet';
81
82
  export { Term } from './Term';
82
83
  export { Trait } from './Trait';
@@ -125,6 +125,7 @@ export declare type MXTaxonSetEnum = "" | "MX.taxonSetSykeButterflyCensusPapilio
125
125
  export declare type MXOccurrenceInFinlandEnum = "" | "MX.doesNotOccur" | "MX.occurrenceInFinlandPublished" | "MX.occurrenceInFinlandCollected" | "MX.occurrenceInFinlandObserved" | "MX.occurrenceInFinlandPublishedUncertain" | "MX.occurrenceInFinlandCollectedUncertain" | "MX.occurrenceInFinlandObservedUncertain" | "MX.occurrenceInFinlandPublishedError" | "MX.occurrenceInFinlandPresumed";
126
126
  export declare type MYTaxonCensusEnum = "MY.taxonCensusTypeCounted" | "MY.taxonCensusTypeEstimated" | "MY.taxonCensusTypeNotCounted";
127
127
  export declare type MITaxonInteractionEnum = "MI.taxonInteractionNeutralism" | "MI.taxonInteractionAntagonism" | "MI.taxonInteractionCommensalism" | "MI.taxonInteractionCompetition" | "MI.taxonInteractionAmensalism" | "MI.taxonInteractionMutualism" | "MI.taxonInteractionPredation" | "MI.taxonInteractionParasitism" | "MI.taxonInteractionEctoparasitism" | "MI.taxonInteractionEndoparasitism";
128
+ export declare type MXSequenceLocusEnum = "" | "MX.sequenceLocusITS" | "MX.sequenceLocusCOI" | "MX.sequenceLocusMatK" | "MX.sequenceLocusRbcL" | "MX.sequenceLocusRpb2" | "MX.sequenceLocusTef1" | "MX.sequenceLocusHsp90";
128
129
  export declare type TDFRangeEnum = "" | "xsd:string" | "xsd:decimal" | "xsd:integer" | "xsd:positiveInteger" | "xsd:nonNegativeInteger" | "xsd:boolean" | "MX.taxon";
129
130
  export declare type TDFUnitOfMeasurementEnum = "" | "TDF.umNM" | "TDF.umUM" | "TDF.umMM" | "TDF.umCM" | "TDF.umM" | "TDF.umKM" | "TDF.umG" | "TDF.umKG" | "TDF.umA" | "TDF.umS" | "TDF.umML" | "TDF.umL" | "TDF.umMOL" | "TDF.umMMOL" | "TDF.umUMOL" | "TDF.umHZ" | "TDF.umP" | "TDF.umPPT" | "TDF.umPPM" | "TDF.umC" | "TDF.umMM2" | "TDF.umCM2" | "TDF.umM2" | "TDF.umARE" | "TDF.umHA" | "TDF.umKM2" | "TDF.umMM3" | "TDF.umCM3" | "TDF.umM3" | "TDF.umGMOL" | "TDF.umMOLL" | "TDF.umCM2H";
130
131
  export declare type TDFStatisticalMethodEnum = "" | "TDF.statisticalMethodMin" | "TDF.statisticalMethodMax" | "TDF.statisticalMethodAvg" | "TDF.statisticalMethodMedian" | "TDF.statisticalMethodSD" | "TDF.statisticalMethodMode";
@@ -0,0 +1,20 @@
1
+ import { MXSequenceLocusEnum } from './';
2
+ export interface TaxonReferenceSequence {
3
+ "@context"?: string;
4
+ id?: string;
5
+ "@type"?: string;
6
+ /**
7
+ * Identifier of the external DNA sequence or sequencing record. This is a free-form identifier that may contain identifiers assigned by external sequence repositories or sequencing databases, and it identifies the sequence or sequencing event rather than the specimen itself. Example values: BOLD:ARIGB038-16.COI-5P, GenBank:KX283134
8
+ */
9
+ externalSequenceID?: string;
10
+ sequenceLocus?: MXSequenceLocusEnum;
11
+ /**
12
+ * Identifier of the specimen from which the reference sequence was obtained or with which the reference sequence is associated. This is a freeform identifier and may contain identifiers from external specimen or sequence databases. Example values: http://id.luomus.fi/GBC.1, http://id.herb.oulu.fi/GAL.32109, BIOUG51784-H10
13
+ */
14
+ sequenceSpecimenID?: string;
15
+ sequenceTaxonID: string;
16
+ /**
17
+ * DNA sequence stored in FASTA format.
18
+ */
19
+ sequenceText?: string[];
20
+ }
@@ -248,7 +248,7 @@ export interface Unit {
248
248
  */
249
249
  seedMorphology?: MYSeedMorphologyEnum;
250
250
  /**
251
- * DNA sequence associated with the occurrence, stored in FASTA format.
251
+ * DNA sequence stored in FASTA format.
252
252
  */
253
253
  sequenceText?: string[];
254
254
  /**
@@ -156,6 +156,8 @@ import { TaxonGroupIucnEditors } from './TaxonGroupIucnEditors';
156
156
  export type { TaxonGroupIucnEditors };
157
157
  import { TaxonInteraction } from './TaxonInteraction';
158
158
  export type { TaxonInteraction };
159
+ import { TaxonReferenceSequence } from './TaxonReferenceSequence';
160
+ export type { TaxonReferenceSequence };
159
161
  import { TaxonSet } from './TaxonSet';
160
162
  export type { TaxonSet };
161
163
  import { Term } from './Term';
@@ -201,7 +203,7 @@ export type { Video };
201
203
  import { ListResponse } from './list-response';
202
204
  export type { ListResponse };
203
205
  export * from './Enums';
204
- export declare type StoreObject = BibliographicResource | Concept | Pinkka | AdministrativeStatus | Agent | Annotation | AnnotationOccurrence | Area | Audio | BirdSongRecognitionSkillLevel | Branch | Checklist | ChecklistVersion | Collection | CompleteList | Contact | ContentContextDescription | DataField | DataManagementPlan | Dataset | DateRange | Device | DeviceIndividual | Document | DocumentIdentification | DownloadRequest | Endangerment | Event | Field | Fieldset | Form | FormFooter | FormInstructions | FormNamedPlaceOptions | FormOptions | FormPermission | FormPermissionPerson | FormPermissionSingle | FormSeason | Gathering | GatheringEvent | GatheringFact | Habitat | Identification | Image | Individual | InformalTaxonGroup | InformationSystem | IucnRedListEvaluation | IucnRedListEvaluationYear | IucnRedListTaxonGroup | LineTransectNest | Measurement | Model | Multimedia | NamedPlace | News | Notification | Occurrence | Organization | Pdf | Permit | Person | Preparation | Profile | Publication | RegionalStatus | Reserve | Sample | SatelliteTrackingProject | SpecimenTransaction | SpecimenTransactionEvent | SubUnit | Tag | Taxon | TaxonCensus | TaxonConcept | TaxonGroupIucnEditors | TaxonInteraction | TaxonSet | Term | Trait | TraitEnumValue | TraitGroup | TraitSearchDataset | TraitSearchRow | TraitSearchTaxon | TraitSubject | TraitValue | Transaction | TransactionEvent | TransactionItem | Translation | TypeSpecimen | Unit | UnitFact | UnitGathering | UnitOfMeasurement | Validator | Video;
206
+ export declare type StoreObject = BibliographicResource | Concept | Pinkka | AdministrativeStatus | Agent | Annotation | AnnotationOccurrence | Area | Audio | BirdSongRecognitionSkillLevel | Branch | Checklist | ChecklistVersion | Collection | CompleteList | Contact | ContentContextDescription | DataField | DataManagementPlan | Dataset | DateRange | Device | DeviceIndividual | Document | DocumentIdentification | DownloadRequest | Endangerment | Event | Field | Fieldset | Form | FormFooter | FormInstructions | FormNamedPlaceOptions | FormOptions | FormPermission | FormPermissionPerson | FormPermissionSingle | FormSeason | Gathering | GatheringEvent | GatheringFact | Habitat | Identification | Image | Individual | InformalTaxonGroup | InformationSystem | IucnRedListEvaluation | IucnRedListEvaluationYear | IucnRedListTaxonGroup | LineTransectNest | Measurement | Model | Multimedia | NamedPlace | News | Notification | Occurrence | Organization | Pdf | Permit | Person | Preparation | Profile | Publication | RegionalStatus | Reserve | Sample | SatelliteTrackingProject | SpecimenTransaction | SpecimenTransactionEvent | SubUnit | Tag | Taxon | TaxonCensus | TaxonConcept | TaxonGroupIucnEditors | TaxonInteraction | TaxonReferenceSequence | TaxonSet | Term | Trait | TraitEnumValue | TraitGroup | TraitSearchDataset | TraitSearchRow | TraitSearchTaxon | TraitSubject | TraitValue | Transaction | TransactionEvent | TransactionItem | Translation | TypeSpecimen | Unit | UnitFact | UnitGathering | UnitOfMeasurement | Validator | Video;
205
207
  export declare type KeyOfUnion<K extends StoreObject> = K extends keyof K ? K : never;
206
208
  export declare type Lang = 'en' | 'fi' | 'sv';
207
209
  export declare function isLang(value: unknown): value is Lang;
@@ -285,6 +287,7 @@ export declare function isTaxonCensus(data: unknown): data is TaxonCensus;
285
287
  export declare function isTaxonConcept(data: unknown): data is TaxonConcept;
286
288
  export declare function isTaxonGroupIucnEditors(data: unknown): data is TaxonGroupIucnEditors;
287
289
  export declare function isTaxonInteraction(data: unknown): data is TaxonInteraction;
290
+ export declare function isTaxonReferenceSequence(data: unknown): data is TaxonReferenceSequence;
288
291
  export declare function isTaxonSet(data: unknown): data is TaxonSet;
289
292
  export declare function isTerm(data: unknown): data is Term;
290
293
  export declare function isTrait(data: unknown): data is Trait;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@luomus/laji-schema",
3
- "version": "2.0.405",
3
+ "version": "2.0.407",
4
4
  "description": "Common autogenerated Typescript interfaces and classes for the schemas used by LUOMUS.",
5
5
  "license": "MIT",
6
6
  "scripts": {