@luomus/laji-schema 2.0.405 → 2.0.407
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/classes/Enums.js +13 -2
- package/dist/cjs/classes/TaxonReferenceSequence.js +12 -0
- package/dist/cjs/classes/index.js +4 -2
- package/dist/cjs/models/TaxonReferenceSequence.js +2 -0
- package/dist/cjs/models/index.js +6 -2
- package/dist/dto/Enums.dto.ts +10 -0
- package/dist/dto/TaxonReferenceSequence.dto.ts +27 -0
- package/dist/dto/Unit.dto.ts +1 -1
- package/dist/dto/index.dto.ts +1 -0
- package/dist/esm/classes/Enums.js +11 -0
- package/dist/esm/classes/TaxonReferenceSequence.js +8 -0
- package/dist/esm/classes/index.js +1 -0
- package/dist/esm/models/TaxonReferenceSequence.js +1 -0
- package/dist/esm/models/index.js +3 -0
- package/dist/types/classes/Enums.d.ts +10 -0
- package/dist/types/classes/TaxonReferenceSequence.d.ts +20 -0
- package/dist/types/classes/Unit.d.ts +1 -1
- package/dist/types/classes/index.d.ts +1 -0
- package/dist/types/models/Enums.d.ts +1 -0
- package/dist/types/models/TaxonReferenceSequence.d.ts +20 -0
- package/dist/types/models/Unit.d.ts +1 -1
- package/dist/types/models/index.d.ts +4 -1
- package/package.json +1 -1
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@@ -2,8 +2,8 @@
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.MYMothSamplingMethodEnum = exports.MYInvasiveControlMethodsEnum = exports.MYHabitatAttributesEnum = exports.MYHabitatEnum = exports.MYGeoreferenceSources = exports.MYGatheringTypeEnum = exports.MYForestVegetationZones = exports.MYCoordinateSystems = exports.MYCoordinateSources = exports.MYBatHabitatEnum = exports.MFPTypeEnum = exports.MHLViewerTypeEnum = exports.MHLResultServiceTypeEnum = exports.MHLRestrictAccessEnum = exports.MHLPrintTypeEnum = exports.MNPTagEnum = exports.MZLanguageEnum = exports.MHLCategoryEnum = exports.MYEventType = exports.MKVEndangermentReasonEnum = exports.MYVerificationStatuses = exports.MYStatuses = exports.MYPreservations = exports.MYDataOriginEnum = exports.GXDatasetTypeEnum = exports.MYCompleteListTypeEnum = exports.MYPublicationTermsEnum = exports.MYMetadataStatuses = exports.MYIntellectualRightsEnum = exports.MYHierarchyTypeEnum = exports.MYDataQualityEnum = exports.MYCollectionTypes = exports.MYCollectionQualityEnum = exports.MXSecureLevels = exports.MABirdSongRecognitionSkillLevelEnum = exports.MZPublicityRestrictionsEnum = exports.MZIntellectualRightsEnum = exports.MYSexes = exports.MYPlantLifeStageEnum = exports.MYLifeStages = exports.MMTypeEnum = exports.MMLuomusIntellectualRightsEnum = exports.MLAreaTypeEnum = exports.MANTypeEnum = exports.MANLineTransectAnnotationEnum = exports.MYInvasiveControlEffectivenessEnum = exports.MANCensusAnnotationEnum = exports.MMANRequiredRolesEnum = exports.MYAtlasCodeEnum = exports.MANAnnotationClassEnum = void 0;
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exports.MARoles = exports.HRAPermitTypeEnum = exports.HRAPermitStatusEnum = exports.MOSABBREVIATIONExplanations = exports.MHNNotificationReasonEnum = exports.MNPPriorityEnum = exports.MNPAccessibilityEnum = exports.MYNestTypeEnum = exports.MYNestSizeEnum = exports.MYLineTransectRouteFieldTypeEnum = exports.MXTypeOfOccurrenceEnum = exports.MKVStateEnum = exports.MXIucnStatuses = exports.MKVReasonForStatusChangeEnum = exports.MKVPossiblyREEnum = exports.MKVExternalPopulationImpactOnRedListStatusEnum = exports.MKVDdReasonEnum = exports.KETypes = exports.KEStates = exports.KEPublicities = exports.MMSideEnum = exports.MXTaxonRankEnum = exports.MYInfraRanks = exports.MYIdentificationBasisEnum = exports.MYDetMethodEnum = exports.MKVHabitatSpecificTypeEnum = exports.MKVHabitatEnum = exports.WBCWindEnum = exports.WBCWayOfTravelEnum = exports.WBCWaterbodiesEnum = exports.WBCVisibilityEnum = exports.WBCTypeOfSnowCoverEnum = exports.WBCSnowCoverEnum = exports.WBCSnowAndIceOnTreesEnum = exports.WBCBerriesAndConesEnum = exports.WBCIceCoverEnum = exports.WBCCloudAndRainEnum = exports.WBCSpeciesAbundanceEnum = exports.MYWaterbirdHabitatEnum = exports.MYWaterbirdCensusPeriodEnum = exports.MYSykeButterFlyCensusWindEnum = exports.MYPointCountHabitatEnum = exports.MYLolifeSiteClassificationEnum = exports.MYBatCollectorEnum = exports.MYRainIntensityEnum = exports.MYMachineAssistanceEnum = exports.MYCloudCoverOktaEnum = exports.MYArtificialLightEnum = exports.MYSamplingMethods = exports.MYPredominantTreeEnum = void 0;
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exports.
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exports.MYWaterbirdPairCountOpinionReasoningEnum = exports.MYWaterbirdJuvenileAgeClassEnum = exports.MYWaterbirdFemaleEnum = exports.MYLolifeNestTreeEnum = exports.MYLolifeDroppingsTypeEnum = exports.MYLolifeDroppingsQualityEnum = exports.MYLolifeDroppingsCountEnum = exports.MYLineTransectObsTypeEnum = exports.MYGlowWormMicrohabitatEnum = exports.MYDetOnSiteEnum = exports.MYWildEnum = exports.MYTaxonConfidenceEnum = exports.MYTasteEnum = exports.MYSubstrateTreeClassificationEnum = exports.MYSubstrateDecayStageEnum = exports.MYSubstrateEnum = exports.MYSmellEnum = exports.MYSeedMorphologyEnum = exports.MYSeedMaturityEnum = exports.MYRecordPartsEnum = exports.MYProvenanceEnum = exports.MYPlantStatusCodeEnum = exports.MYObservationStatusEnum = exports.MYNativeStatusEnum = exports.MYMovingDirectionEnum = exports.MYMicrobiologicalRiskGroupEnum = exports.MYIndirectObservationTypeEnum = exports.MYFruitTypeEnum = exports.MYEpochOrSeries = void 0;
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exports.MYBirdPlumageEnum = exports.MYBirdAgeEnum = exports.MYBatBehaviorEnum = exports.MYAbundanceUnitEnum = exports.MYTypeVerifications = exports.MYTypeStatuses = exports.HRABStatusEnum = exports.HRABItemTypeEnum = exports.HRAASentByEnum = exports.HRAAEventTypeEnum = exports.HRATransactionTypes = exports.HRATransactionStatuses = exports.HRASentTypes = exports.HRAResourceImportedEnum = exports.HRALocalDepartments = exports.HRAGeneticResourceTypeEnum = exports.HRAAvailableForGeneticResearchEnum = exports.TDFTypeEnum = exports.MYRecordBases = exports.TDFStatisticalMethodEnum = exports.TDFUnitOfMeasurementEnum = exports.TDFRangeEnum = exports.MXSequenceLocusEnum = exports.MITaxonInteractionEnum = exports.MYTaxonCensusEnum = exports.MXOccurrenceInFinlandEnum = exports.MXTaxonSetEnum = exports.MXInvasiveSpeciesEstablishmentStatuses = exports.MXInvasiveSpeciesCategories = exports.MXAdminStatusEnum = exports.HBEInvasiveSpeciesMainGroups = exports.MMANTypeEnum = exports.HRXEventTypeEnum = exports.HRXTypeEnum = exports.HRXTransportMethodEnum = exports.HRXStatusEnum = exports.HRXResourceImportedEnum = exports.HRXGeneticResourceTypeEnum = exports.HRXAvailableForGeneticResearchEnum = exports.MFQualityCheckMethodEnum = exports.MFQualityEnum = exports.MFPreparationTypeEnum = exports.MFMaterialEnum = exports.MFIndividualsInPreparationEnum = exports.MFElutionMediumEnum = exports.MAFinnishBirdSongRecognitionSkillLevelEnum = exports.MABirdwatchingActivityLevelEnum = exports.MFPreparationProcessEnum = exports.MFPreparationMaterialsEnum = exports.MARoleKotkaEnum = void 0;
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exports.MYWaterbirdPairCountOpinionReasoningEnum = exports.MYWaterbirdJuvenileAgeClassEnum = exports.MYWaterbirdFemaleEnum = exports.MYLolifeNestTreeEnum = exports.MYLolifeDroppingsTypeEnum = exports.MYLolifeDroppingsQualityEnum = exports.MYLolifeDroppingsCountEnum = exports.MYLineTransectObsTypeEnum = exports.MYGlowWormMicrohabitatEnum = exports.MYDetOnSiteEnum = exports.MYWildEnum = exports.MYTaxonConfidenceEnum = exports.MYTasteEnum = exports.MYSubstrateTreeClassificationEnum = exports.MYSubstrateDecayStageEnum = exports.MYSubstrateEnum = exports.MYSmellEnum = exports.MYSeedMorphologyEnum = exports.MYSeedMaturityEnum = exports.MYRecordPartsEnum = exports.MYProvenanceEnum = exports.MYPlantStatusCodeEnum = exports.MYObservationStatusEnum = exports.MYNativeStatusEnum = exports.MYMovingDirectionEnum = exports.MYMicrobiologicalRiskGroupEnum = exports.MYIndirectObservationTypeEnum = exports.MYFruitTypeEnum = exports.MYEpochOrSeries = exports.MYDistanceEnum = void 0;
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var MANAnnotationClassEnum;
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(function (MANAnnotationClassEnum) {
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MANAnnotationClassEnum["empty"] = "";
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@@ -1935,6 +1935,17 @@ var MITaxonInteractionEnum;
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MITaxonInteractionEnum["taxonInteractionEctoparasitism"] = "MI.taxonInteractionEctoparasitism";
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MITaxonInteractionEnum["taxonInteractionEndoparasitism"] = "MI.taxonInteractionEndoparasitism";
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})(MITaxonInteractionEnum = exports.MITaxonInteractionEnum || (exports.MITaxonInteractionEnum = {}));
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var MXSequenceLocusEnum;
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(function (MXSequenceLocusEnum) {
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MXSequenceLocusEnum["empty"] = "";
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MXSequenceLocusEnum["MX.sequenceLocusITS"] = "MX.sequenceLocusITS";
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MXSequenceLocusEnum["MX.sequenceLocusCOI"] = "MX.sequenceLocusCOI";
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MXSequenceLocusEnum["MX.sequenceLocusMatK"] = "MX.sequenceLocusMatK";
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MXSequenceLocusEnum["MX.sequenceLocusRbcL"] = "MX.sequenceLocusRbcL";
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MXSequenceLocusEnum["MX.sequenceLocusRpb2"] = "MX.sequenceLocusRpb2";
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MXSequenceLocusEnum["MX.sequenceLocusTef1"] = "MX.sequenceLocusTef1";
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MXSequenceLocusEnum["MX.sequenceLocusHsp90"] = "MX.sequenceLocusHsp90";
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})(MXSequenceLocusEnum = exports.MXSequenceLocusEnum || (exports.MXSequenceLocusEnum = {}));
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var TDFRangeEnum;
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(function (TDFRangeEnum) {
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TDFRangeEnum["empty"] = "";
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@@ -0,0 +1,12 @@
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.TaxonReferenceSequence = void 0;
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/* tslint:disable */
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/*
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* This file was automatically generated.
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* DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
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* and run the command to regenerate this file.
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*/
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class TaxonReferenceSequence {
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}
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exports.TaxonReferenceSequence = TaxonReferenceSequence;
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@@ -11,8 +11,8 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.IucnRedListEvaluationYear = exports.IucnRedListEvaluation = exports.InformationSystem = exports.InformalTaxonGroup = exports.Individual = exports.Image = exports.Identification = exports.Habitat = exports.GatheringFact = exports.GatheringEvent = exports.Gathering = exports.FormSeason = exports.FormPermissionSingle = exports.FormPermissionPerson = exports.FormPermission = exports.FormOptions = exports.FormNamedPlaceOptions = exports.FormInstructions = exports.FormFooter = exports.Form = exports.Fieldset = exports.Field = exports.Event = exports.Endangerment = exports.DownloadRequest = exports.DocumentIdentification = exports.Document = exports.DeviceIndividual = exports.Device = exports.DateRange = exports.Dataset = exports.DataManagementPlan = exports.DataField = exports.ContentContextDescription = exports.Contact = exports.CompleteList = exports.Collection = exports.ChecklistVersion = exports.Checklist = exports.Branch = exports.BirdSongRecognitionSkillLevel = exports.Audio = exports.Area = exports.AnnotationOccurrence = exports.Annotation = exports.Agent = exports.AdministrativeStatus = exports.Pinkka = exports.Concept = exports.BibliographicResource = void 0;
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exports.
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exports.ListResponse = void 0;
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exports.Validator = exports.UnitOfMeasurement = exports.UnitGathering = exports.UnitFact = exports.Unit = exports.TypeSpecimen = exports.Translation = exports.TransactionItem = exports.TransactionEvent = exports.Transaction = exports.TraitValue = exports.TraitSubject = exports.TraitSearchTaxon = exports.TraitSearchRow = exports.TraitSearchDataset = exports.TraitGroup = exports.TraitEnumValue = exports.Trait = exports.Term = exports.TaxonSet = exports.TaxonReferenceSequence = exports.TaxonInteraction = exports.TaxonGroupIucnEditors = exports.TaxonConcept = exports.TaxonCensus = exports.Taxon = exports.Tag = exports.SubUnit = exports.SpecimenTransactionEvent = exports.SpecimenTransaction = exports.SatelliteTrackingProject = exports.Sample = exports.Reserve = exports.RegionalStatus = exports.Publication = exports.Profile = exports.Preparation = exports.Person = exports.Permit = exports.Pdf = exports.Organization = exports.Occurrence = exports.Notification = exports.News = exports.NamedPlace = exports.Multimedia = exports.Model = exports.Measurement = exports.LineTransectNest = exports.IucnRedListTaxonGroup = void 0;
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exports.ListResponse = exports.Video = void 0;
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var BibliographicResource_1 = require("./BibliographicResource");
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Object.defineProperty(exports, "BibliographicResource", { enumerable: true, get: function () { return BibliographicResource_1.BibliographicResource; } });
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var Concept_1 = require("./Concept");
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Object.defineProperty(exports, "TaxonGroupIucnEditors", { enumerable: true, get: function () { return TaxonGroupIucnEditors_1.TaxonGroupIucnEditors; } });
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var TaxonInteraction_1 = require("./TaxonInteraction");
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Object.defineProperty(exports, "TaxonInteraction", { enumerable: true, get: function () { return TaxonInteraction_1.TaxonInteraction; } });
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var TaxonReferenceSequence_1 = require("./TaxonReferenceSequence");
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Object.defineProperty(exports, "TaxonReferenceSequence", { enumerable: true, get: function () { return TaxonReferenceSequence_1.TaxonReferenceSequence; } });
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var TaxonSet_1 = require("./TaxonSet");
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Object.defineProperty(exports, "TaxonSet", { enumerable: true, get: function () { return TaxonSet_1.TaxonSet; } });
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var Term_1 = require("./Term");
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package/dist/cjs/models/index.js
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.isInformationSystem = exports.isInformalTaxonGroup = exports.isIndividual = exports.isImage = exports.isIdentification = exports.isHabitat = exports.isGatheringFact = exports.isGatheringEvent = exports.isGathering = exports.isFormSeason = exports.isFormPermissionSingle = exports.isFormPermissionPerson = exports.isFormPermission = exports.isFormOptions = exports.isFormNamedPlaceOptions = exports.isFormInstructions = exports.isFormFooter = exports.isForm = exports.isFieldset = exports.isField = exports.isEvent = exports.isEndangerment = exports.isDownloadRequest = exports.isDocumentIdentification = exports.isDocument = exports.isDeviceIndividual = exports.isDevice = exports.isDateRange = exports.isDataset = exports.isDataManagementPlan = exports.isDataField = exports.isContentContextDescription = exports.isContact = exports.isCompleteList = exports.isCollection = exports.isChecklistVersion = exports.isChecklist = exports.isBranch = exports.isBirdSongRecognitionSkillLevel = exports.isAudio = exports.isArea = exports.isAnnotationOccurrence = exports.isAnnotation = exports.isAgent = exports.isAdministrativeStatus = exports.isPinkka = exports.isConcept = exports.isBibliographicResource = exports.isLangObject = exports.isLang = void 0;
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exports.
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exports.isVideo = exports.isValidator = void 0;
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exports.isUnitGathering = exports.isUnitFact = exports.isUnit = exports.isTypeSpecimen = exports.isTranslation = exports.isTransactionItem = exports.isTransactionEvent = exports.isTransaction = exports.isTraitValue = exports.isTraitSubject = exports.isTraitSearchTaxon = exports.isTraitSearchRow = exports.isTraitSearchDataset = exports.isTraitGroup = exports.isTraitEnumValue = exports.isTrait = exports.isTerm = exports.isTaxonSet = exports.isTaxonReferenceSequence = exports.isTaxonInteraction = exports.isTaxonGroupIucnEditors = exports.isTaxonConcept = exports.isTaxonCensus = exports.isTaxon = exports.isTag = exports.isSubUnit = exports.isSpecimenTransactionEvent = exports.isSpecimenTransaction = exports.isSatelliteTrackingProject = exports.isSample = exports.isReserve = exports.isRegionalStatus = exports.isPublication = exports.isProfile = exports.isPreparation = exports.isPerson = exports.isPermit = exports.isPdf = exports.isOrganization = exports.isOccurrence = exports.isNotification = exports.isNews = exports.isNamedPlace = exports.isMultimedia = exports.isModel = exports.isMeasurement = exports.isLineTransectNest = exports.isIucnRedListTaxonGroup = exports.isIucnRedListEvaluationYear = exports.isIucnRedListEvaluation = void 0;
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exports.isVideo = exports.isValidator = exports.isUnitOfMeasurement = void 0;
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__exportStar(require("./Enums"), exports);
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function isLang(value) {
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return typeof value === 'string' && ['en', 'fi', 'sv'].includes(value);
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return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MI.taxonInteraction');
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}
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exports.isTaxonInteraction = isTaxonInteraction;
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function isTaxonReferenceSequence(data) {
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return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MX.taxonReferenceSequence');
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}
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exports.isTaxonReferenceSequence = isTaxonReferenceSequence;
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function isTaxonSet(data) {
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return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MX.taxonSet');
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}
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package/dist/dto/Enums.dto.ts
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"taxonInteractionEctoparasitism" = "MI.taxonInteractionEctoparasitism",
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"taxonInteractionEndoparasitism" = "MI.taxonInteractionEndoparasitism"
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}
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export enum MXSequenceLocusEnum {
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"empty" = "",
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"MX.sequenceLocusITS" = "MX.sequenceLocusITS",
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"MX.sequenceLocusCOI" = "MX.sequenceLocusCOI",
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"MX.sequenceLocusMatK" = "MX.sequenceLocusMatK",
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"MX.sequenceLocusRbcL" = "MX.sequenceLocusRbcL",
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"MX.sequenceLocusRpb2" = "MX.sequenceLocusRpb2",
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"MX.sequenceLocusTef1" = "MX.sequenceLocusTef1",
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"MX.sequenceLocusHsp90" = "MX.sequenceLocusHsp90"
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}
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export enum TDFRangeEnum {
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"empty" = "",
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"xsd:string" = "xsd:string",
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import { MXSequenceLocusEnum } from './index.dto';
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/* tslint:disable */
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/*
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* This file was automatically generated.
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* DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
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* and run the command to regenerate this file.
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*/
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export class TaxonReferenceSequence {
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"@context"?: string;
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id?: string;
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"@type"?: string;
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/**
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* Identifier of the external DNA sequence or sequencing record. This is a free-form identifier that may contain identifiers assigned by external sequence repositories or sequencing databases, and it identifies the sequence or sequencing event rather than the specimen itself. Example values: BOLD:ARIGB038-16.COI-5P, GenBank:KX283134
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*/
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externalSequenceID?: string;
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sequenceLocus?: MXSequenceLocusEnum;
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/**
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* Identifier of the specimen from which the reference sequence was obtained or with which the reference sequence is associated. This is a freeform identifier and may contain identifiers from external specimen or sequence databases. Example values: http://id.luomus.fi/GBC.1, http://id.herb.oulu.fi/GAL.32109, BIOUG51784-H10
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*/
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sequenceSpecimenID?: string;
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sequenceTaxonID: string;
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/**
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* DNA sequence stored in FASTA format.
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*/
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sequenceText?: string[];
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}
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package/dist/dto/Unit.dto.ts
CHANGED
package/dist/dto/index.dto.ts
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export { TaxonConcept } from './TaxonConcept.dto'
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export { TaxonGroupIucnEditors } from './TaxonGroupIucnEditors.dto'
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export { TaxonInteraction } from './TaxonInteraction.dto'
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export { TaxonReferenceSequence } from './TaxonReferenceSequence.dto'
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export { TaxonSet } from './TaxonSet.dto'
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export { Term } from './Term.dto'
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export { Trait } from './Trait.dto'
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MITaxonInteractionEnum["taxonInteractionEctoparasitism"] = "MI.taxonInteractionEctoparasitism";
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MITaxonInteractionEnum["taxonInteractionEndoparasitism"] = "MI.taxonInteractionEndoparasitism";
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})(MITaxonInteractionEnum || (MITaxonInteractionEnum = {}));
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export var MXSequenceLocusEnum;
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(function (MXSequenceLocusEnum) {
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MXSequenceLocusEnum["empty"] = "";
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MXSequenceLocusEnum["MX.sequenceLocusITS"] = "MX.sequenceLocusITS";
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MXSequenceLocusEnum["MX.sequenceLocusCOI"] = "MX.sequenceLocusCOI";
|
|
1937
|
+
MXSequenceLocusEnum["MX.sequenceLocusMatK"] = "MX.sequenceLocusMatK";
|
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1938
|
+
MXSequenceLocusEnum["MX.sequenceLocusRbcL"] = "MX.sequenceLocusRbcL";
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1939
|
+
MXSequenceLocusEnum["MX.sequenceLocusRpb2"] = "MX.sequenceLocusRpb2";
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|
1940
|
+
MXSequenceLocusEnum["MX.sequenceLocusTef1"] = "MX.sequenceLocusTef1";
|
|
1941
|
+
MXSequenceLocusEnum["MX.sequenceLocusHsp90"] = "MX.sequenceLocusHsp90";
|
|
1942
|
+
})(MXSequenceLocusEnum || (MXSequenceLocusEnum = {}));
|
|
1932
1943
|
export var TDFRangeEnum;
|
|
1933
1944
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(function (TDFRangeEnum) {
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1934
1945
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TDFRangeEnum["empty"] = "";
|
|
@@ -77,6 +77,7 @@ export { TaxonCensus } from './TaxonCensus';
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77
77
|
export { TaxonConcept } from './TaxonConcept';
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78
78
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export { TaxonGroupIucnEditors } from './TaxonGroupIucnEditors';
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79
79
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export { TaxonInteraction } from './TaxonInteraction';
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|
80
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+
export { TaxonReferenceSequence } from './TaxonReferenceSequence';
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80
81
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export { TaxonSet } from './TaxonSet';
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81
82
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export { Term } from './Term';
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82
83
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export { Trait } from './Trait';
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export {};
|
package/dist/esm/models/index.js
CHANGED
|
@@ -245,6 +245,9 @@ export function isTaxonGroupIucnEditors(data) {
|
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245
245
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export function isTaxonInteraction(data) {
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246
246
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return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MI.taxonInteraction');
|
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247
247
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}
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248
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+
export function isTaxonReferenceSequence(data) {
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+
return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MX.taxonReferenceSequence');
|
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+
}
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248
251
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export function isTaxonSet(data) {
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return !!(data && typeof data === 'object' && '@type' in data && data['@type'] === 'MX.taxonSet');
|
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250
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|
}
|
|
@@ -1802,6 +1802,16 @@ export declare enum MITaxonInteractionEnum {
|
|
|
1802
1802
|
"taxonInteractionEctoparasitism" = "MI.taxonInteractionEctoparasitism",
|
|
1803
1803
|
"taxonInteractionEndoparasitism" = "MI.taxonInteractionEndoparasitism"
|
|
1804
1804
|
}
|
|
1805
|
+
export declare enum MXSequenceLocusEnum {
|
|
1806
|
+
"empty" = "",
|
|
1807
|
+
"MX.sequenceLocusITS" = "MX.sequenceLocusITS",
|
|
1808
|
+
"MX.sequenceLocusCOI" = "MX.sequenceLocusCOI",
|
|
1809
|
+
"MX.sequenceLocusMatK" = "MX.sequenceLocusMatK",
|
|
1810
|
+
"MX.sequenceLocusRbcL" = "MX.sequenceLocusRbcL",
|
|
1811
|
+
"MX.sequenceLocusRpb2" = "MX.sequenceLocusRpb2",
|
|
1812
|
+
"MX.sequenceLocusTef1" = "MX.sequenceLocusTef1",
|
|
1813
|
+
"MX.sequenceLocusHsp90" = "MX.sequenceLocusHsp90"
|
|
1814
|
+
}
|
|
1805
1815
|
export declare enum TDFRangeEnum {
|
|
1806
1816
|
"empty" = "",
|
|
1807
1817
|
"xsd:string" = "xsd:string",
|
|
@@ -0,0 +1,20 @@
|
|
|
1
|
+
import { MXSequenceLocusEnum } from './';
|
|
2
|
+
export declare class TaxonReferenceSequence {
|
|
3
|
+
"@context"?: string;
|
|
4
|
+
id?: string;
|
|
5
|
+
"@type"?: string;
|
|
6
|
+
/**
|
|
7
|
+
* Identifier of the external DNA sequence or sequencing record. This is a free-form identifier that may contain identifiers assigned by external sequence repositories or sequencing databases, and it identifies the sequence or sequencing event rather than the specimen itself. Example values: BOLD:ARIGB038-16.COI-5P, GenBank:KX283134
|
|
8
|
+
*/
|
|
9
|
+
externalSequenceID?: string;
|
|
10
|
+
sequenceLocus?: MXSequenceLocusEnum;
|
|
11
|
+
/**
|
|
12
|
+
* Identifier of the specimen from which the reference sequence was obtained or with which the reference sequence is associated. This is a freeform identifier and may contain identifiers from external specimen or sequence databases. Example values: http://id.luomus.fi/GBC.1, http://id.herb.oulu.fi/GAL.32109, BIOUG51784-H10
|
|
13
|
+
*/
|
|
14
|
+
sequenceSpecimenID?: string;
|
|
15
|
+
sequenceTaxonID: string;
|
|
16
|
+
/**
|
|
17
|
+
* DNA sequence stored in FASTA format.
|
|
18
|
+
*/
|
|
19
|
+
sequenceText?: string[];
|
|
20
|
+
}
|
|
@@ -77,6 +77,7 @@ export { TaxonCensus } from './TaxonCensus';
|
|
|
77
77
|
export { TaxonConcept } from './TaxonConcept';
|
|
78
78
|
export { TaxonGroupIucnEditors } from './TaxonGroupIucnEditors';
|
|
79
79
|
export { TaxonInteraction } from './TaxonInteraction';
|
|
80
|
+
export { TaxonReferenceSequence } from './TaxonReferenceSequence';
|
|
80
81
|
export { TaxonSet } from './TaxonSet';
|
|
81
82
|
export { Term } from './Term';
|
|
82
83
|
export { Trait } from './Trait';
|
|
@@ -125,6 +125,7 @@ export declare type MXTaxonSetEnum = "" | "MX.taxonSetSykeButterflyCensusPapilio
|
|
|
125
125
|
export declare type MXOccurrenceInFinlandEnum = "" | "MX.doesNotOccur" | "MX.occurrenceInFinlandPublished" | "MX.occurrenceInFinlandCollected" | "MX.occurrenceInFinlandObserved" | "MX.occurrenceInFinlandPublishedUncertain" | "MX.occurrenceInFinlandCollectedUncertain" | "MX.occurrenceInFinlandObservedUncertain" | "MX.occurrenceInFinlandPublishedError" | "MX.occurrenceInFinlandPresumed";
|
|
126
126
|
export declare type MYTaxonCensusEnum = "MY.taxonCensusTypeCounted" | "MY.taxonCensusTypeEstimated" | "MY.taxonCensusTypeNotCounted";
|
|
127
127
|
export declare type MITaxonInteractionEnum = "MI.taxonInteractionNeutralism" | "MI.taxonInteractionAntagonism" | "MI.taxonInteractionCommensalism" | "MI.taxonInteractionCompetition" | "MI.taxonInteractionAmensalism" | "MI.taxonInteractionMutualism" | "MI.taxonInteractionPredation" | "MI.taxonInteractionParasitism" | "MI.taxonInteractionEctoparasitism" | "MI.taxonInteractionEndoparasitism";
|
|
128
|
+
export declare type MXSequenceLocusEnum = "" | "MX.sequenceLocusITS" | "MX.sequenceLocusCOI" | "MX.sequenceLocusMatK" | "MX.sequenceLocusRbcL" | "MX.sequenceLocusRpb2" | "MX.sequenceLocusTef1" | "MX.sequenceLocusHsp90";
|
|
128
129
|
export declare type TDFRangeEnum = "" | "xsd:string" | "xsd:decimal" | "xsd:integer" | "xsd:positiveInteger" | "xsd:nonNegativeInteger" | "xsd:boolean" | "MX.taxon";
|
|
129
130
|
export declare type TDFUnitOfMeasurementEnum = "" | "TDF.umNM" | "TDF.umUM" | "TDF.umMM" | "TDF.umCM" | "TDF.umM" | "TDF.umKM" | "TDF.umG" | "TDF.umKG" | "TDF.umA" | "TDF.umS" | "TDF.umML" | "TDF.umL" | "TDF.umMOL" | "TDF.umMMOL" | "TDF.umUMOL" | "TDF.umHZ" | "TDF.umP" | "TDF.umPPT" | "TDF.umPPM" | "TDF.umC" | "TDF.umMM2" | "TDF.umCM2" | "TDF.umM2" | "TDF.umARE" | "TDF.umHA" | "TDF.umKM2" | "TDF.umMM3" | "TDF.umCM3" | "TDF.umM3" | "TDF.umGMOL" | "TDF.umMOLL" | "TDF.umCM2H";
|
|
130
131
|
export declare type TDFStatisticalMethodEnum = "" | "TDF.statisticalMethodMin" | "TDF.statisticalMethodMax" | "TDF.statisticalMethodAvg" | "TDF.statisticalMethodMedian" | "TDF.statisticalMethodSD" | "TDF.statisticalMethodMode";
|
|
@@ -0,0 +1,20 @@
|
|
|
1
|
+
import { MXSequenceLocusEnum } from './';
|
|
2
|
+
export interface TaxonReferenceSequence {
|
|
3
|
+
"@context"?: string;
|
|
4
|
+
id?: string;
|
|
5
|
+
"@type"?: string;
|
|
6
|
+
/**
|
|
7
|
+
* Identifier of the external DNA sequence or sequencing record. This is a free-form identifier that may contain identifiers assigned by external sequence repositories or sequencing databases, and it identifies the sequence or sequencing event rather than the specimen itself. Example values: BOLD:ARIGB038-16.COI-5P, GenBank:KX283134
|
|
8
|
+
*/
|
|
9
|
+
externalSequenceID?: string;
|
|
10
|
+
sequenceLocus?: MXSequenceLocusEnum;
|
|
11
|
+
/**
|
|
12
|
+
* Identifier of the specimen from which the reference sequence was obtained or with which the reference sequence is associated. This is a freeform identifier and may contain identifiers from external specimen or sequence databases. Example values: http://id.luomus.fi/GBC.1, http://id.herb.oulu.fi/GAL.32109, BIOUG51784-H10
|
|
13
|
+
*/
|
|
14
|
+
sequenceSpecimenID?: string;
|
|
15
|
+
sequenceTaxonID: string;
|
|
16
|
+
/**
|
|
17
|
+
* DNA sequence stored in FASTA format.
|
|
18
|
+
*/
|
|
19
|
+
sequenceText?: string[];
|
|
20
|
+
}
|
|
@@ -156,6 +156,8 @@ import { TaxonGroupIucnEditors } from './TaxonGroupIucnEditors';
|
|
|
156
156
|
export type { TaxonGroupIucnEditors };
|
|
157
157
|
import { TaxonInteraction } from './TaxonInteraction';
|
|
158
158
|
export type { TaxonInteraction };
|
|
159
|
+
import { TaxonReferenceSequence } from './TaxonReferenceSequence';
|
|
160
|
+
export type { TaxonReferenceSequence };
|
|
159
161
|
import { TaxonSet } from './TaxonSet';
|
|
160
162
|
export type { TaxonSet };
|
|
161
163
|
import { Term } from './Term';
|
|
@@ -201,7 +203,7 @@ export type { Video };
|
|
|
201
203
|
import { ListResponse } from './list-response';
|
|
202
204
|
export type { ListResponse };
|
|
203
205
|
export * from './Enums';
|
|
204
|
-
export declare type StoreObject = BibliographicResource | Concept | Pinkka | AdministrativeStatus | Agent | Annotation | AnnotationOccurrence | Area | Audio | BirdSongRecognitionSkillLevel | Branch | Checklist | ChecklistVersion | Collection | CompleteList | Contact | ContentContextDescription | DataField | DataManagementPlan | Dataset | DateRange | Device | DeviceIndividual | Document | DocumentIdentification | DownloadRequest | Endangerment | Event | Field | Fieldset | Form | FormFooter | FormInstructions | FormNamedPlaceOptions | FormOptions | FormPermission | FormPermissionPerson | FormPermissionSingle | FormSeason | Gathering | GatheringEvent | GatheringFact | Habitat | Identification | Image | Individual | InformalTaxonGroup | InformationSystem | IucnRedListEvaluation | IucnRedListEvaluationYear | IucnRedListTaxonGroup | LineTransectNest | Measurement | Model | Multimedia | NamedPlace | News | Notification | Occurrence | Organization | Pdf | Permit | Person | Preparation | Profile | Publication | RegionalStatus | Reserve | Sample | SatelliteTrackingProject | SpecimenTransaction | SpecimenTransactionEvent | SubUnit | Tag | Taxon | TaxonCensus | TaxonConcept | TaxonGroupIucnEditors | TaxonInteraction | TaxonSet | Term | Trait | TraitEnumValue | TraitGroup | TraitSearchDataset | TraitSearchRow | TraitSearchTaxon | TraitSubject | TraitValue | Transaction | TransactionEvent | TransactionItem | Translation | TypeSpecimen | Unit | UnitFact | UnitGathering | UnitOfMeasurement | Validator | Video;
|
|
206
|
+
export declare type StoreObject = BibliographicResource | Concept | Pinkka | AdministrativeStatus | Agent | Annotation | AnnotationOccurrence | Area | Audio | BirdSongRecognitionSkillLevel | Branch | Checklist | ChecklistVersion | Collection | CompleteList | Contact | ContentContextDescription | DataField | DataManagementPlan | Dataset | DateRange | Device | DeviceIndividual | Document | DocumentIdentification | DownloadRequest | Endangerment | Event | Field | Fieldset | Form | FormFooter | FormInstructions | FormNamedPlaceOptions | FormOptions | FormPermission | FormPermissionPerson | FormPermissionSingle | FormSeason | Gathering | GatheringEvent | GatheringFact | Habitat | Identification | Image | Individual | InformalTaxonGroup | InformationSystem | IucnRedListEvaluation | IucnRedListEvaluationYear | IucnRedListTaxonGroup | LineTransectNest | Measurement | Model | Multimedia | NamedPlace | News | Notification | Occurrence | Organization | Pdf | Permit | Person | Preparation | Profile | Publication | RegionalStatus | Reserve | Sample | SatelliteTrackingProject | SpecimenTransaction | SpecimenTransactionEvent | SubUnit | Tag | Taxon | TaxonCensus | TaxonConcept | TaxonGroupIucnEditors | TaxonInteraction | TaxonReferenceSequence | TaxonSet | Term | Trait | TraitEnumValue | TraitGroup | TraitSearchDataset | TraitSearchRow | TraitSearchTaxon | TraitSubject | TraitValue | Transaction | TransactionEvent | TransactionItem | Translation | TypeSpecimen | Unit | UnitFact | UnitGathering | UnitOfMeasurement | Validator | Video;
|
|
205
207
|
export declare type KeyOfUnion<K extends StoreObject> = K extends keyof K ? K : never;
|
|
206
208
|
export declare type Lang = 'en' | 'fi' | 'sv';
|
|
207
209
|
export declare function isLang(value: unknown): value is Lang;
|
|
@@ -285,6 +287,7 @@ export declare function isTaxonCensus(data: unknown): data is TaxonCensus;
|
|
|
285
287
|
export declare function isTaxonConcept(data: unknown): data is TaxonConcept;
|
|
286
288
|
export declare function isTaxonGroupIucnEditors(data: unknown): data is TaxonGroupIucnEditors;
|
|
287
289
|
export declare function isTaxonInteraction(data: unknown): data is TaxonInteraction;
|
|
290
|
+
export declare function isTaxonReferenceSequence(data: unknown): data is TaxonReferenceSequence;
|
|
288
291
|
export declare function isTaxonSet(data: unknown): data is TaxonSet;
|
|
289
292
|
export declare function isTerm(data: unknown): data is Term;
|
|
290
293
|
export declare function isTrait(data: unknown): data is Trait;
|