@luomus/laji-schema 1.0.5 → 2.0.0

package/lib/models/Reserve.d.ts

@@ -1,12 +0,0 @@
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-export interface Reserve {
-    "@context"?: string;
-    id?: string;
-    "@type"?: string;
-    reserver: string;
-    until: string;
-}

package/lib/models/Reserve.js

@@ -1,8 +0,0 @@
-"use strict";
-/* tslint:disable */
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-Object.defineProperty(exports, "__esModule", { value: true });

package/lib/models/Sample.d.ts

@@ -1,139 +0,0 @@
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-export interface Sample {
-    "@context"?: string;
-    id?: string;
-    "@type"?: string;
-    /**
-     * Name of the instrument or device used for DNA extraction
-     */
-    DNAExtractionInstrument?: string;
-    /**
-     * Other identifiers this preparation/sample has, in format 'type:identifier'. For example: 'MZHtissue:123'. You can enter the type and colon and then click 'generate' to fetch the next free number for that prefix type.
-     */
-    additionalIDs?: string[];
-    /**
-     * BOLD ID (usually BOLD "Sample ID") for the preparation/sample. If no other preparation/sample information is entered, use the BOLD field on the document level
-     */
-    bold?: string;
-    /**
-     * The collection which this preparation/sample belongs to, if different from the collection of the specimen.
-     */
-    collectionID?: string;
-    /**
-     * Notes on the defects of the preparation/sample (missing parts or such). For specimen level status use the condition field in the basic information section (document level). Empty value means same as "good" or "hyvä" - that the sample is in fine condition.
-     */
-    condition?: string;
-    /**
-     * Tag for the preparation/sample. For specimen level tags, use the tag field in the basic information section (document level).
-     */
-    datasetID?: string[];
-    /**
-     * DNA sample elution medium
-     */
-    elutionMedium?: "" | "MF.elutionMediumUltrapureWater" | "MF.elutionMediumElutionBuffer";
-    /**
-     * Diary-style information about what has been done to the preparation/sample
-     */
-    event?: string[];
-    /**
-     * Genbank ID for the preparation/sample. If no other preparation/sample information is entered, use the Genbank field on the document level
-     */
-    genbank?: string[];
-    /**
-     * For example a jar that contains multiple fish individuals can be recorded as one specimen and one preparation. Can also be used for DNA samples (was DNA extracted from single or multiple individuals?).
-     */
-    individualsInPreparation?: "" | "MF.individualsInPreparationMultiple" | "MF.individualsInPreparationSingle";
-    /**
-     * Preparation/sample material. Choose preparation/sample type first.
-     */
-    material?: "" | "MF.materialBirdStudySkin" | "MF.materialWing" | "MF.materialTail" | "MF.materialWingAndTail" | "MF.materialSkull" | "MF.materialEntireSkeleton" | "MF.materialBones" | "MF.materialSkullAndBones" | "MF.materialAntlers" | "MF.materialHead" | "MF.materialMuscle" | "MF.materialLiver" | "MF.materialLeaf" | "MF.materialBlood" | "MF.materialLeg" | "MF.materialSkin" | "MF.materialFeather" | "MF.materialEgg" | "MF.materialEggContent" | "MF.materialGenomicDNA" | "MF.materialMitochondrialDNA" | "MF.materialChloroplastDNA" | "MF.materialEnvironmentalDNA" | "MF.materialTeeth" | "MF.materialBodyParts" | "MF.materialEntireOrganism" | "MF.materialAppendages" | "MF.materialGenitalPreparation" | "MF.materialSection" | "MF.materialChromosomes" | "MF.materialShell" | "MF.materialHair" | "MF.materialClutch" | "MF.materialEggshell" | "MF.materialEggshellFragments" | "MF.materialNest" | "MF.materialNestMaterial" | "MF.materialOther";
-    /**
-     * Additional information about the preparation/sample
-     */
-    notes?: string;
-    /**
-     * Type of preparation/sample
-     */
-    preparationType: "MF.preparationTypeSkin" | "MF.preparationTypeSkeletal" | "MF.preparationTypeMount" | "MF.preparationTypeTissue" | "MF.preparationTypeTissueEcotoxicology" | "MF.preparationTypeLiquid" | "MF.preparationTypeMicroscopeSlide" | "MF.preparationTypeDNAExtract" | "MF.preparationTypeEgg" | "MF.preparationTypeNest" | "MF.preparationTypeOther";
-    /**
-     * Preservation methods and materials of the preparation/sample. It is possible to choose several
-     */
-    preservation?: ("" | "MY.preservationPressed" | "MY.preservationDry" | "MY.preservationCriticalPointDrying" | "MY.preservationPinned" | "MY.preservationGlued" | "MY.preservationLiquid" | "MY.preservationEthanol" | "MY.preservationEthanolPure" | "MY.preservationEthanol70" | "MY.preservationEthanol80" | "MY.preservationEthanol80Pure" | "MY.preservationEthanol96" | "MY.preservationEthanolDenatured" | "MY.preservationEthanolFormalin" | "MY.preservationEthanolExFormalin" | "MY.preservationFormalin" | "MY.preservationBouinSolution" | "MY.preservationPampelsFluid" | "MY.preservationGlycerol" | "MY.preservationParaffin" | "MY.preservationMercuricChloride" | "MY.preservationCryopreserved" | "MY.preservationFrozen" | "MY.preservationFrozenMinus80C" | "MY.preservationFreezeDried" | "MY.preservationGoldPlated" | "MY.preservationActiveCulture" | "MY.preservationLiving" | "MY.preservationSlide" | "MY.preservationSlideCanadaBalsam" | "MY.preservationSlideEuparal" | "MY.preservationSlidePolyviol" | "MY.preservationStuffed" | "MY.preservationCast" | "MY.preservationPlastinated" | "MY.preservationFrozenMinus80CAndEthanolMinus20C")[];
-    /**
-     * Publication references or doi's that refer to this preparations/sample. For publications referring to the specimen, use publications field in the Other section (document level).
-     */
-    publication?: string[];
-    /**
-     * DNA sample quality on a three step scale. The quality is defined by quality check measurements
-     */
-    quality?: "" | "MF.qualityLow" | "MF.qualityMedium" | "MF.qualityHigh";
-    /**
-     * Date of the latest quality check measurements
-     */
-    qualityCheckDate?: string;
-    /**
-     * Method or instrument used for quality measurements
-     */
-    qualityCheckMethod?: ("" | "MF.qualityCheckMethodNanoDrop" | "MF.qualityCheckMethodCubit")[];
-    /**
-     * Additional information about the DNA sample quality
-     */
-    qualityNotes?: string;
-    /**
-     * Location of the preparation/sample so that museum personnel can find it. E.g. room, freezer, shelf number etc.
-     */
-    sampleLocation?: string;
-    specimenID: string;
-    /**
-     * Status of the preparation/sample. For specimen level status use the status field in the basic information section. Empty value means same as "ok" - that there is nothing special about the status of the sample.
-     */
-    status?: "" | "MY.statusOk" | "MY.statusMissing" | "MY.statusUnrecoverable" | "MY.statusLost" | "MY.statusDonated" | "MY.statusDeposited" | "MY.statusDeaccessioned" | "MY.statusDiscarded" | "MY.statusSpent" | "MY.statusDestroyed" | "MY.statusUndefined" | "MY.statusAxenic" | "MY.statusNonAxenic" | "MY.statusNotAvailable" | "MY.statusDead" | "MY.statusNoVoucherRetained";
-    /**
-     * Which parent or larger collection this is part of.
-     */
-    isPartOf?: string;
-    /**
-     * For measurements taken from the preparation/sample, use the measurement field in the preparation/sample section. For measurements taken from the specimen, use the measurements field on unit level.
-     */
-    measurement?: {
-        DNAConcentrationNgPerMicroliter?: number[];
-        DNARatioOfAbsorbance260And280?: number[];
-        DNAVolumeMicroliters?: number[];
-        beakMillimeters?: number[];
-        bodyCentimeters?: number[];
-        bodyMillimeters?: number[];
-        earLengthMillimeters?: number[];
-        embryoCount?: number[];
-        follicleDiameterMillimeters?: number[];
-        footLengthMillimeters?: number[];
-        forearmMillimeters?: number[];
-        gonadMillimeters?: number[];
-        /**
-         * Which parent or larger collection this is part of.
-         */
-        isPartOf?: string;
-        tailCentimeters?: number[];
-        tailMillimeters?: number[];
-        tarsusLengthMillimeters?: number[];
-        totalLengthCentimeters?: number[];
-        totalLengthMillimeters?: number[];
-        uterineScarCount?: number[];
-        weightGrams?: number[];
-        weightKilograms?: number[];
-        wingMaxMillimeters?: number[];
-        wingMillimeters?: number[];
-        wingMinMillimeters?: number[];
-    };
-    creator?: string;
-    dateCreated?: string;
-    dateEdited?: string;
-    editor?: string;
-    /**
-     * Team or organisation that owns the record and can edit it.
-     */
-    owner?: string;
-}

package/lib/models/Sample.js

@@ -1,8 +0,0 @@
-"use strict";
-/* tslint:disable */
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-Object.defineProperty(exports, "__esModule", { value: true });

package/lib/models/SatelliteTrackingProject.d.ts

@@ -1,17 +0,0 @@
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-export interface SatelliteTrackingProject {
-    "@context"?: string;
-    id?: string;
-    "@type"?: string;
-    targetIndividualIds?: string[];
-    description?: {
-        en?: string;
-        fi?: string;
-        sv?: string;
-    };
-    name?: string;
-}

package/lib/models/SatelliteTrackingProject.js

@@ -1,8 +0,0 @@
-"use strict";
-/* tslint:disable */
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-Object.defineProperty(exports, "__esModule", { value: true });

package/lib/models/SpecimenTransaction.d.ts

@@ -1,195 +0,0 @@
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-export interface SpecimenTransaction {
-    "@context"?: string;
-    id?: string;
-    "@type"?: string;
-    /**
-     * Internationally Recognized Certificate of Compliance. Kotka checks from the ABS Clearing House that the entered IRCC number exists and is valid.
-     */
-    IRCC?: string;
-    attachments?: string[];
-    /**
-     * If you choose "Yes, with restrictions", explain the restrictions in the following field "Rights and obligations".
-     */
-    availableForGeneticResearch?: "" | "HRX.availableForGeneticResearchYes" | "HRX.availableForGeneticResearchWithRestrictions" | "HRX.availableForGeneticResearchNo";
-    awayCount?: number;
-    awayIDs?: string[];
-    /**
-     * For statistical purposes. The collection where the transaction is directed to. Record transactions directed to different collections as separate transactions if you use this field.
-     */
-    collectionID?: string;
-    /**
-     * Select the correspondent organization from a list. If not found on the list, you need to add the new organization first.
-     */
-    correspondentOrganization?: string;
-    /**
-     * Name of the corresponding person. If the transaction goes to a private person, write their postal address here.
-     */
-    correspondentPerson?: string;
-    /**
-     * Receicing researcher in the correspondent organisation for outgoing transactions.
-     */
-    correspondentResearcher?: string;
-    damagedCount?: number;
-    damagedIDs?: string[];
-    /**
-     * Date when the loan needs to be returned.
-     */
-    dueDate?: string;
-    /**
-     * Sender's ID for the transaction.
-     */
-    externalID?: string;
-    /**
-     * Country where the genetic resource or traditional knowledge was acquired from, provider country, country of origin. List of countries in Kotka is based on ISO 3166 Country Codes -standard and may differ from the country list in ABSCH.
-     */
-    geneticResourceAcquisitionCountry?: string;
-    /**
-     * Date when the genetic resource or traditional knowledge was aqcuired.
-     */
-    geneticResourceAcquisitionDate?: string;
-    /**
-     * Description of the genetic resource or traditional knowledge (possible identifiers, taxa, number of specimens, region etc.). Instruction source EU DECLARE User manual and QA.
-     */
-    geneticResourceDescription?: string;
-    /**
-     * Presence or absence of rights and obligations relating to access and benefit sharing, including rights and obligations regarding subsequent applications and commercialization. Instruction source EU DECLARE user manual and QA.
-     */
-    geneticResourceRightsAndObligations?: string;
-    /**
-     * Person or legal entity from whom the user obtained the genetic resources directly, i.e. the previous actor in the value chain. Often a museum or other organization. If a genetic resource is obtained directly from the provider country, the name of the country should be provided. Instruction source EU DECLARE User manual and QA.
-     */
-    geneticResourceSource?: string;
-    /**
-     * Choose the type of the genetic resource for statistical and reporting purposes.
-     */
-    geneticResourceType?: "" | "HRX.geneticResourceTypeAnimal" | "HRX.geneticResourceTypePlant" | "HRX.geneticResourceTypeFungus" | "HRX.geneticResourceTypeMicrobe" | "HRX.geneticResourceTypeSoil" | "HRX.geneticResourceTypeAqua";
-    harmonizedSystemCode?: string;
-    /**
-     * Whether the resource has an IRCC number or not. If not, more information needs to be filled in.
-     */
-    hasIRCC?: boolean;
-    /**
-     * Date when incoming transaction was received.
-     */
-    incomingReceived?: string;
-    /**
-     * Date when the incoming loan was returned to the sender.
-     */
-    incomingReturned?: string;
-    /**
-     * Private remarks that are shown only in Kotka and not to the corresponding organisation.
-     */
-    internalRemarks?: string;
-    /**
-     * Loan/transaction number used in paper loan catalogs or old software (e.g. Curator)
-     */
-    legacyID?: string;
-    /**
-     * Person handling the transaction at local Kotka institution.
-     */
-    localHandler?: string;
-    localHandlerEmail?: string;
-    /**
-     * Person responsible for the transaction in our museum/local Kotka institution
-     */
-    localPerson?: string;
-    /**
-     * Contact email for the person responsible in our museum.
-     */
-    localPersonEmail?: string;
-    /**
-     * For incoming loans, name of the researcher receiving the loan at our local institution.
-     */
-    localResearcher?: string;
-    /**
-     * Description of the material included in this transaction.
-     */
-    material?: string;
-    missingCount?: number;
-    missingIDs?: string[];
-    /**
-     * In how many parcels was the transaction sent/carried.
-     */
-    numberOfParcels?: string;
-    /**
-     * Date when the outgoing loan was returned to us
-     */
-    outgoingReturned?: string;
-    /**
-     * When the transaction was sent out from us
-     */
-    outgoingSent?: string;
-    permits?: {
-        id?: string;
-        "@type"?: string;
-        "@context"?: string;
-        permitEndDate?: string;
-        permitFile?: string;
-        permitNotes?: string;
-        permitStartDate?: string;
-        permitStatus?: "" | "HRA.permitStatusAvailable" | "HRA.permitStatusNotRequired";
-        permitType?: "" | "HRA.permitTypePIC" | "HRA.permitTypeMAT" | "HRA.permitTypeMTA" | "HRA.permitCollectingPermit" | "HRA.permitTypeExportPermit" | "HRA.permitTypeOther" | "HRA.permitTypeMemorandumOfUnderstanding";
-        /**
-         * Which parent or larger collection this is part of.
-         */
-        isPartOf?: string;
-    }[];
-    /**
-     * Remarks that are shown to both parties of the transaction.
-     */
-    publicRemarks?: string;
-    /**
-     * When signed loan receipt was received from the loanee
-     */
-    receiptReturned?: string;
-    /**
-     * When loan request was received here.
-     */
-    requestReceived?: string;
-    /**
-     * Are you importing genetic resources, traditional knowledge associated to genetic resources or both?
-     */
-    resourceImported?: string;
-    returnedCount?: number;
-    returnedIDs?: string[];
-    /**
-     * Whether the transaction is closed, outstanding or in process.
-     */
-    status?: "" | "HRX.statusInProcess" | "HRX.statusOutstanding" | "HRX.statusClosed";
-    transactionEvents?: {
-        eventDate: string;
-        eventDocumentIDs?: string[];
-        eventHandler?: string;
-        eventNotes?: string;
-        eventType: "HRX.eventTypeReturn" | "HRX.eventTypeAddition";
-    }[];
-    /**
-     * Means of sending, mail, courier etc.
-     */
-    transportMethod?: "" | "HRX.transportMethodPriority" | "HRX.transportMethodEconomy" | "HRX.transportMethodCourier" | "HRX.transportMethodCarried" | "HRX.transportMethodOther" | "HRX.transportMethodImage";
-    /**
-     * What kind of transaction this is.
-     */
-    type: "HRX.typeLoanIncoming" | "HRX.typeGiftIncoming" | "HRX.typeExchangeIncoming" | "HRX.typeLoanOutgoing" | "HRX.typeGiftOutgoing" | "HRX.typeExchangeOutgoing" | "HRX.typeFieldCollection" | "HRX.typeImportNotice" | "HRX.typeABSNegotiations" | "HRX.typeVirtualLoanOutgoing" | "HRX.typeDeaccession";
-    /**
-     * Is it e.g. non-human genetic material that is going to be used for genetic research as is defined by the protocol?
-     */
-    underNagoya?: boolean;
-    creator?: string;
-    dateCreated?: string;
-    dateEdited?: string;
-    editor?: string;
-    /**
-     * Team or organisation that owns the record and can edit it.
-     */
-    owner?: string;
-    /**
-     * PUBLIC: all data can be published; PROTECTED: exact locality is hidden (100*100km square); PRIVATE: most of the data is hidden. Empty value means same as public.
-     */
-    publicityRestrictions?: "" | "MZ.publicityRestrictionsPublic" | "MZ.publicityRestrictionsProtected" | "MZ.publicityRestrictionsPrivate";
-}

package/lib/models/SpecimenTransaction.js

@@ -1,8 +0,0 @@
-"use strict";
-/* tslint:disable */
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-Object.defineProperty(exports, "__esModule", { value: true });

package/lib/models/SpecimenTransactionEvent.d.ts

@@ -1,15 +0,0 @@
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-export interface SpecimenTransactionEvent {
-    "@context"?: string;
-    id?: string;
-    "@type"?: string;
-    eventDate: string;
-    eventDocumentIDs?: string[];
-    eventHandler?: string;
-    eventNotes?: string;
-    eventType: "HRX.eventTypeReturn" | "HRX.eventTypeAddition";
-}

package/lib/models/SpecimenTransactionEvent.js

@@ -1,8 +0,0 @@
-"use strict";
-/* tslint:disable */
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-Object.defineProperty(exports, "__esModule", { value: true });

package/lib/models/SubUnit.d.ts

@@ -1,19 +0,0 @@
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-export interface SubUnit {
-    "@context"?: string;
-    id?: string;
-    "@type"?: string;
-    /**
-     * Estimated or known age in calendar years, years, days or other relevant unit.
-     */
-    age?: string;
-    individualCount?: number;
-    /**
-     * Sex of the individual(s)
-     */
-    sex?: "" | "MY.sexM" | "MY.sexF" | "MY.sexW" | "MY.sexU" | "MY.sexN" | "MY.sexX" | "MY.sexE" | "MY.sexC";
-}

package/lib/models/SubUnit.js

@@ -1,8 +0,0 @@
-"use strict";
-/* tslint:disable */
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-Object.defineProperty(exports, "__esModule", { value: true });

package/lib/models/Tag.d.ts

@@ -1,23 +0,0 @@
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-export interface Tag {
-    "@context"?: string;
-    id?: string;
-    "@type"?: string;
-    description?: {
-        en?: string;
-        fi?: string;
-        sv?: string;
-    };
-    name?: {
-        en?: string;
-        fi?: string;
-        sv?: string;
-    };
-    requiredRolesAdd?: ("" | "MMAN.expert" | "MMAN.basic" | "MMAN.owner" | "MMAN.formAdmin" | "MMAN.ictAdmin")[];
-    requiredRolesRemove?: ("" | "MMAN.expert" | "MMAN.basic" | "MMAN.owner" | "MMAN.formAdmin" | "MMAN.ictAdmin")[];
-    type?: "" | "MMAN.typeCheck" | "MMAN.typeAdmin" | "MMAN.typeInfo" | "MMAN.typeInvasive" | "MMAN.typeCensus" | "MMAN.typeNegativeQuality" | "MMAN.typePositiveQuality";
-}

package/lib/models/Tag.js

@@ -1,8 +0,0 @@
-"use strict";
-/* tslint:disable */
-/**
- * This file was automatically generated.
- * DO NOT MODIFY IT BY HAND. Instead, modify the source JSONSchema file,
- * and run the command to regenerate this file.
- */
-Object.defineProperty(exports, "__esModule", { value: true });