@lucern/contracts 0.3.0-alpha.4 → 0.3.0-alpha.5

package/dist/function-registry/manifest.d.ts

@@ -1,7 +1,7 @@
 import { SurfaceClass, FunctionSurfaceIntent, FunctionSurfaceMap, SurfaceExposure } from './types.js';
 import 'zod';
 import '../defineFunction-DO97DKs4.js';
-import '../tool-contracts-BcKz-VGj.js';
+import '../tool-contracts-CYXVPN4K.js';
 
 type LucernOperationManifestEntry = {
     name: string;
@@ -11,7 +11,7 @@ type LucernOperationManifestEntry = {
     rationale: string;
 };
 declare const MCP_CORE_OPERATION_NAMES: readonly ["compile_context", "identity_whoami", "check_permission", "filter_by_permission", "create_belief", "get_belief", "list_beliefs", "refine_belief", "modulate_confidence", "fork_belief", "archive_belief", "search_beliefs", "bisect_confidence", "create_evidence", "get_evidence", "list_evidence", "search_evidence", "link_evidence_to_belief", "link_evidence_to_question", "create_question", "get_question", "list_questions", "refine_question", "update_question_status", "archive_question", "create_answer", "get_answer", "find_missing_questions", "get_high_priority_questions", "get_falsification_questions", "create_topic", "get_topic", "list_topics", "update_topic", "get_topic_tree"];
-declare const MCP_ANALYSIS_PLATFORM_OPERATION_NAMES: readonly ["create_edge", "query_lineage", "traverse_graph", "get_graph_neighborhood", "get_graph_structure_analysis", "find_contradictions", "flag_contradiction", "detect_confirmation_bias", "get_topic_coverage", "get_graph_gaps"];
+declare const MCP_ANALYSIS_PLATFORM_OPERATION_NAMES: readonly ["create_edge", "query_lineage", "traverse_graph", "get_graph_neighborhood", "get_graph_structure_analysis", "list_graph_intelligence_queries", "run_graph_intelligence_query", "find_contradictions", "flag_contradiction", "detect_confirmation_bias", "get_topic_coverage", "get_graph_gaps"];
 declare const MCP_ANALYSIS_TENANT_OPERATION_NAMES: readonly ["analyze_topic_density", "discover_entity_connections", "trace_entity_impact"];
 declare const MCP_WORKFLOW_PLATFORM_OPERATION_NAMES: readonly ["list_lenses", "apply_lens_to_topic", "remove_lens_from_topic", "get_ontology", "list_ontologies", "apply_ontology", "match_entity_type", "resolve_effective_ontology", "add_worktree", "activate_worktree", "list_worktrees", "list_all_worktrees", "list_campaigns", "update_worktree_targets", "update_worktree_metadata", "create_task", "list_tasks", "update_task", "complete_task"];
 declare const MCP_WORKFLOW_TENANT_OPERATION_NAMES: readonly ["resolve_effective_ontology", "get_observation_context", "ingest_observation", "merge"];
@@ -19,7 +19,7 @@ declare const MCP_GOVERNANCE_PLATFORM_OPERATION_NAMES: readonly ["create_lens",
 declare const MCP_GOVERNANCE_TENANT_OPERATION_NAMES: readonly ["create_epistemic_contract", "evaluate_contract", "get_contract_status", "publish_ontology_version", "deprecate_ontology_version", "manage_write_policy"];
 declare const MCP_AUTOMATION_OPERATION_NAMES: readonly ["apply_auto_branching", "trigger_belief_review"];
 declare const DUPLICATE_OPERATION_NAMES: readonly ["link_evidence"];
-declare const PLATFORM_PUBLIC_OPERATION_NAMES: readonly ["compile_context", "identity_whoami", "check_permission", "filter_by_permission", "create_belief", "get_belief", "list_beliefs", "refine_belief", "modulate_confidence", "fork_belief", "archive_belief", "search_beliefs", "bisect_confidence", "create_evidence", "get_evidence", "list_evidence", "search_evidence", "link_evidence_to_belief", "link_evidence_to_question", "create_question", "get_question", "list_questions", "refine_question", "update_question_status", "archive_question", "create_answer", "get_answer", "find_missing_questions", "get_high_priority_questions", "get_falsification_questions", "create_topic", "get_topic", "list_topics", "update_topic", "get_topic_tree", "create_edge", "query_lineage", "traverse_graph", "get_graph_neighborhood", "get_graph_structure_analysis", "find_contradictions", "flag_contradiction", "detect_confirmation_bias", "get_topic_coverage", "get_graph_gaps", "list_lenses", "apply_lens_to_topic", "remove_lens_from_topic", "get_ontology", "list_ontologies", "apply_ontology", "match_entity_type", "resolve_effective_ontology", "add_worktree", "activate_worktree", "list_worktrees", "list_all_worktrees", "list_campaigns", "update_worktree_targets", "update_worktree_metadata", "create_task", "list_tasks", "update_task", "complete_task", "create_lens", "create_ontology", "update_ontology", "archive_ontology", "create_ontology_version", "link_evidence"];
+declare const PLATFORM_PUBLIC_OPERATION_NAMES: readonly ["compile_context", "identity_whoami", "check_permission", "filter_by_permission", "create_belief", "get_belief", "list_beliefs", "refine_belief", "modulate_confidence", "fork_belief", "archive_belief", "search_beliefs", "bisect_confidence", "create_evidence", "get_evidence", "list_evidence", "search_evidence", "link_evidence_to_belief", "link_evidence_to_question", "create_question", "get_question", "list_questions", "refine_question", "update_question_status", "archive_question", "create_answer", "get_answer", "find_missing_questions", "get_high_priority_questions", "get_falsification_questions", "create_topic", "get_topic", "list_topics", "update_topic", "get_topic_tree", "create_edge", "query_lineage", "traverse_graph", "get_graph_neighborhood", "get_graph_structure_analysis", "list_graph_intelligence_queries", "run_graph_intelligence_query", "find_contradictions", "flag_contradiction", "detect_confirmation_bias", "get_topic_coverage", "get_graph_gaps", "list_lenses", "apply_lens_to_topic", "remove_lens_from_topic", "get_ontology", "list_ontologies", "apply_ontology", "match_entity_type", "resolve_effective_ontology", "add_worktree", "activate_worktree", "list_worktrees", "list_all_worktrees", "list_campaigns", "update_worktree_targets", "update_worktree_metadata", "create_task", "list_tasks", "update_task", "complete_task", "create_lens", "create_ontology", "update_ontology", "archive_ontology", "create_ontology_version", "link_evidence"];
 declare const TENANT_PUBLIC_OPERATION_NAMES: readonly ["analyze_topic_density", "discover_entity_connections", "trace_entity_impact", "resolve_effective_ontology", "get_observation_context", "ingest_observation", "merge", "create_epistemic_contract", "evaluate_contract", "get_contract_status", "publish_ontology_version", "deprecate_ontology_version", "manage_write_policy", "apply_auto_branching", "trigger_belief_review"];
 declare const PLATFORM_INTERNAL_OPERATION_NAMES: readonly ["register_session", "heartbeat_session", "end_session", "list_active_sessions", "send_agent_message", "broadcast_message", "get_agent_inbox", "claim_files", "generate_session_handoff", "record_scope_learning", "pipeline_snapshot", "seed_belief_lattice", "get_lattice_coverage", "get_code_context", "get_change_history", "get_failure_log", "record_attempt", "begin_build_session", "push", "open_pull_request", "record_judgment", "get_audit_trail"];
 declare const LEGACY_COMPAT_OPERATION_NAMES: readonly ["discover", "add_evidence", "answer_question", "get_confidence_history"];

package/dist/function-registry/manifest.js

@@ -92,6 +92,8 @@ var MCP_ANALYSIS_PLATFORM_OPERATION_NAMES = [
   "traverse_graph",
   "get_graph_neighborhood",
   "get_graph_structure_analysis",
+  "list_graph_intelligence_queries",
+  "run_graph_intelligence_query",
   "find_contradictions",
   "flag_contradiction",
   "detect_confirmation_bias",

package/dist/function-registry/manifest.js.map

@@ -1 +1 @@
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type {\n  FunctionSurfaceIntent,\n  SurfaceClass,\n  SurfaceExposure,\n  FunctionSurfaceMap,\n} from \"./types.js\";\n\nexport type LucernOperationManifestEntry = {\n  name: string;\n  surfaceClass: SurfaceClass;\n  surfaceIntent: FunctionSurfaceIntent;\n  surfaces: FunctionSurfaceMap;\n  rationale: string;\n};\n\nconst publicEverywhere: FunctionSurfaceMap = {\n  sdk: \"public\",\n  rest: \"public\",\n  mcp: \"public\",\n  cli: \"public\",\n};\n\nconst internalSystem: FunctionSurfaceMap = {\n  sdk: \"internal\",\n  rest: \"internal\",\n  mcp: \"internal\",\n  cli: \"internal\",\n};\n\nconst publicWithInternalMcp: FunctionSurfaceMap = {\n  sdk: \"public\",\n  rest: \"public\",\n  mcp: \"internal\",\n  cli: \"public\",\n};\n\nconst publicWithoutMcp: FunctionSurfaceMap = {\n  sdk: \"public\",\n  rest: \"public\",\n  mcp: \"none\",\n  cli: \"none\",\n};\n\nconst sdkOnlyPublic: FunctionSurfaceMap = {\n  sdk: \"public\",\n  rest: \"none\",\n  mcp: \"none\",\n  cli: \"none\",\n};\n\nconst mcpOnlyInternal: FunctionSurfaceMap = {\n  sdk: \"none\",\n  rest: \"none\",\n  mcp: \"internal\",\n  cli: \"none\",\n};\n\nfunction entries(\n  names: readonly string[],\n  surfaceClass: SurfaceClass,\n  surfaceIntent: FunctionSurfaceIntent,\n  surfaces: FunctionSurfaceMap,\n  rationale: string\n): Record<string, LucernOperationManifestEntry> {\n  return Object.fromEntries(\n    names.map((name) => [\n      name,\n      {\n        name,\n        surfaceClass,\n        surfaceIntent,\n        surfaces,\n        rationale,\n      },\n    ])\n  );\n}\n\nexport const MCP_CORE_OPERATION_NAMES = [\n  \"compile_context\",\n  \"identity_whoami\",\n  \"check_permission\",\n  \"filter_by_permission\",\n  \"create_belief\",\n  \"get_belief\",\n  \"list_beliefs\",\n  \"refine_belief\",\n  \"modulate_confidence\",\n  \"fork_belief\",\n  \"archive_belief\",\n  \"search_beliefs\",\n  \"bisect_confidence\",\n  \"create_evidence\",\n  \"get_evidence\",\n  \"list_evidence\",\n  \"search_evidence\",\n  \"link_evidence_to_belief\",\n  \"link_evidence_to_question\",\n  \"create_question\",\n  \"get_question\",\n  \"list_questions\",\n  \"refine_question\",\n  \"update_question_status\",\n  \"archive_question\",\n  \"create_answer\",\n  \"get_answer\",\n  \"find_missing_questions\",\n  \"get_high_priority_questions\",\n  \"get_falsification_questions\",\n  \"create_topic\",\n  \"get_topic\",\n  \"list_topics\",\n  \"update_topic\",\n  \"get_topic_tree\",\n] as const;\n\nexport const MCP_ANALYSIS_PLATFORM_OPERATION_NAMES = [\n  \"create_edge\",\n  \"query_lineage\",\n  \"traverse_graph\",\n  \"get_graph_neighborhood\",\n  \"get_graph_structure_analysis\",\n  \"find_contradictions\",\n  \"flag_contradiction\",\n  \"detect_confirmation_bias\",\n  \"get_topic_coverage\",\n  \"get_graph_gaps\",\n] as const;\n\nexport const MCP_ANALYSIS_TENANT_OPERATION_NAMES = [\n  \"analyze_topic_density\",\n  \"discover_entity_connections\",\n  \"trace_entity_impact\",\n] as const;\n\nexport const MCP_WORKFLOW_PLATFORM_OPERATION_NAMES = [\n  \"list_lenses\",\n  \"apply_lens_to_topic\",\n  \"remove_lens_from_topic\",\n  \"get_ontology\",\n  \"list_ontologies\",\n  \"apply_ontology\",\n  \"match_entity_type\",\n  \"resolve_effective_ontology\",\n  \"add_worktree\",\n  \"activate_worktree\",\n  \"list_worktrees\",\n  \"list_all_worktrees\",\n  \"list_campaigns\",\n  \"update_worktree_targets\",\n  \"update_worktree_metadata\",\n  \"create_task\",\n  \"list_tasks\",\n  \"update_task\",\n  \"complete_task\",\n] as const;\n\nexport const MCP_WORKFLOW_TENANT_OPERATION_NAMES = [\n  \"resolve_effective_ontology\",\n  \"get_observation_context\",\n  \"ingest_observation\",\n  \"merge\",\n] as const;\n\nexport const MCP_GOVERNANCE_PLATFORM_OPERATION_NAMES = [\n  \"create_lens\",\n  \"create_ontology\",\n  \"update_ontology\",\n  \"archive_ontology\",\n  \"create_ontology_version\",\n] as const;\n\nexport const MCP_GOVERNANCE_TENANT_OPERATION_NAMES = [\n  \"create_epistemic_contract\",\n  \"evaluate_contract\",\n  \"get_contract_status\",\n  \"publish_ontology_version\",\n  \"deprecate_ontology_version\",\n  \"manage_write_policy\",\n] as const;\n\nexport const MCP_AUTOMATION_OPERATION_NAMES = [\n  \"apply_auto_branching\",\n  \"trigger_belief_review\",\n] as const;\n\nexport const DUPLICATE_OPERATION_NAMES = [\n  \"link_evidence\",\n] as const;\n\nexport const PLATFORM_PUBLIC_OPERATION_NAMES = [\n  ...MCP_CORE_OPERATION_NAMES,\n  ...MCP_ANALYSIS_PLATFORM_OPERATION_NAMES,\n  ...MCP_WORKFLOW_PLATFORM_OPERATION_NAMES,\n  ...MCP_GOVERNANCE_PLATFORM_OPERATION_NAMES,\n  ...DUPLICATE_OPERATION_NAMES,\n] as const;\n\nexport const TENANT_PUBLIC_OPERATION_NAMES = [\n  ...MCP_ANALYSIS_TENANT_OPERATION_NAMES,\n  ...MCP_WORKFLOW_TENANT_OPERATION_NAMES,\n  ...MCP_GOVERNANCE_TENANT_OPERATION_NAMES,\n  ...MCP_AUTOMATION_OPERATION_NAMES,\n] as const;\n\nexport const PLATFORM_INTERNAL_OPERATION_NAMES = [\n  \"register_session\",\n  \"heartbeat_session\",\n  \"end_session\",\n  \"list_active_sessions\",\n  \"send_agent_message\",\n  \"broadcast_message\",\n  \"get_agent_inbox\",\n  \"claim_files\",\n  \"generate_session_handoff\",\n  \"record_scope_learning\",\n  \"pipeline_snapshot\",\n  \"seed_belief_lattice\",\n  \"get_lattice_coverage\",\n  \"get_code_context\",\n  \"get_change_history\",\n  \"get_failure_log\",\n  \"record_attempt\",\n  \"begin_build_session\",\n  \"push\",\n  \"open_pull_request\",\n  \"record_judgment\",\n  \"get_audit_trail\",\n] as const;\n\nexport const LEGACY_COMPAT_OPERATION_NAMES = [\n  \"discover\",\n  \"add_evidence\",\n  \"answer_question\",\n  \"get_confidence_history\",\n] as const;\n\nexport const SDK_ONLY_OPERATION_NAMES = [\n  \"start_worktree\",\n  \"update_worktree_phase\",\n  \"advance_worktree_phase\",\n  \"add_note_to_worktree\",\n  \"link_document_to_worktree\",\n  \"link_evidence_to_worktree\",\n  \"link_question_to_worktree\",\n  \"link_belief_to_worktree\",\n  \"create_synthesized_belief\",\n  \"complete_hypothesis_formation\",\n  \"complete_evidence_review\",\n  \"refine_worktree_belief\",\n  \"trace_provenance\",\n  \"get_belief_relationships\",\n  \"get_belief_support_chain\",\n  \"explore_connections\",\n  \"get_deep_lineage\",\n  \"graph_aware_search\",\n  \"get_collection_conviction\",\n  \"get_conviction_trend\",\n  \"analyze_belief_criticality\",\n  \"analyze_belief_cluster_candidates\",\n  \"create_belief_conditional\",\n  \"get_necessary_evidence\",\n  \"analyze_reasoning_depth\",\n  \"get_evidence_by_methodology\",\n  \"create_evidence_task\",\n  \"get_task_counts\",\n  \"add_research_action\",\n  \"get_predictions\",\n  \"get_surprise_detection\",\n  \"get_challenged_beliefs\",\n  \"get_causal_chains\",\n  \"get_non_consensus_beliefs\",\n  \"get_beliefs_by_epistemic_status\",\n  \"detect_anchoring_bias\",\n  \"detect_source_concentration\",\n  \"find_soft_contradictions\",\n  \"find_semantic_bridges\",\n  \"find_semantic_orphans\",\n] as const;\n\nexport const MCP_ONLY_INTERNAL_OPERATION_NAMES = [\n  \"evaluate_engineering_contract\",\n  \"evaluate_research_contract\",\n] as const;\n\nexport const FORBIDDEN_APPLICATION_OPERATION_NAMES = [\n  \"execute_deep_research\",\n  \"search_sources\",\n  \"search_resources\",\n  \"get_privileged_evidence\",\n  \"get_privileged_signals\",\n  \"get_thesis_artifacts\",\n] as const;\n\nexport const LUCERN_OPERATION_MANIFEST = {\n  ...entries(\n    MCP_CORE_OPERATION_NAMES,\n    \"platform_public\",\n    \"mcp_core\",\n    publicEverywhere,\n    \"Default conversational Lucern MCP primitive for reading, writing, and shaping the reasoning graph.\"\n  ),\n  ...entries(\n    MCP_ANALYSIS_PLATFORM_OPERATION_NAMES,\n    \"platform_public\",\n    \"mcp_analysis\",\n    publicEverywhere,\n    \"High-signal graph analysis operation that belongs in chat/MCP because users naturally ask for gaps, contradictions, lineage, and coverage.\"\n  ),\n  ...entries(\n    MCP_ANALYSIS_TENANT_OPERATION_NAMES,\n    \"tenant_public\",\n    \"mcp_analysis\",\n    publicEverywhere,\n    \"Tenant-scoped analysis operation that remains MCP-visible because agents can answer graph-quality and impact questions from chat.\"\n  ),\n  ...entries(\n    MCP_WORKFLOW_PLATFORM_OPERATION_NAMES,\n    \"platform_public\",\n    \"mcp_workflow\",\n    publicEverywhere,\n    \"Workflow operation expected by coding agents and human MCP users managing Lucern worktrees, tasks, lenses, and observations.\"\n  ),\n  ...entries(\n    MCP_WORKFLOW_TENANT_OPERATION_NAMES,\n    \"tenant_public\",\n    \"mcp_workflow\",\n    publicEverywhere,\n    \"Tenant-scoped workflow operation expected by coding agents and human MCP users managing observations and worktree lifecycle.\"\n  ),\n  ...entries(\n    MCP_AUTOMATION_OPERATION_NAMES,\n    \"tenant_public\",\n    \"mcp_analysis\",\n    publicEverywhere,\n    \"Tenant-scoped automation that remains MCP-visible because agents can explicitly request review or branching assistance.\"\n  ),\n  ...entries(\n    MCP_GOVERNANCE_PLATFORM_OPERATION_NAMES,\n    \"platform_public\",\n    \"mcp_governance\",\n    publicWithInternalMcp,\n    \"Governance/admin operation. SDK, REST, and CLI remain public, but MCP is internal by default to keep chat surfaces focused.\"\n  ),\n  ...entries(\n    MCP_GOVERNANCE_TENANT_OPERATION_NAMES,\n    \"tenant_public\",\n    \"mcp_governance\",\n    publicWithInternalMcp,\n    \"Governance/admin operation. SDK, REST, and CLI remain public, but MCP is internal by default to keep chat surfaces focused.\"\n  ),\n  ...entries(\n    DUPLICATE_OPERATION_NAMES,\n    \"platform_public\",\n    \"compatibility\",\n    publicWithoutMcp,\n    \"Duplicate compatibility operation kept for SDK/REST callers, removed from MCP/CLI discovery in favor of the canonical specific tool.\"\n  ),\n  ...entries(\n    PLATFORM_INTERNAL_OPERATION_NAMES,\n    \"platform_internal\",\n    \"system\",\n    internalSystem,\n    \"Lucern system/background operation. Available to platform code paths, hidden from public MCP discovery.\"\n  ),\n  ...entries(\n    LEGACY_COMPAT_OPERATION_NAMES,\n    \"legacy_compat\",\n    \"compatibility\",\n    publicWithoutMcp,\n    \"Temporary compatibility operation. Must name a canonical replacement before removal.\"\n  ),\n  ...entries(\n    SDK_ONLY_OPERATION_NAMES,\n    \"tenant_public\",\n    \"sdk_granular\",\n    sdkOnlyPublic,\n    \"Granular Lucern SDK operation. Not an MCP, REST, or CLI tool until backed by the generated function pipe.\"\n  ),\n  ...entries(\n    MCP_ONLY_INTERNAL_OPERATION_NAMES,\n    \"platform_internal\",\n    \"system\",\n    mcpOnlyInternal,\n    \"Lucern MCP-only platform operation for local agent/bootstrap or verification workflows. Hidden from public discovery.\"\n  ),\n} as const satisfies Record<string, LucernOperationManifestEntry>;\n\nexport type LucernOperationName = keyof typeof LUCERN_OPERATION_MANIFEST;\n\nexport function surfaceEnabled(exposure: SurfaceExposure): boolean {\n  return exposure !== \"none\";\n}\n\nexport function surfaceIntentGateViolations(\n  entry: LucernOperationManifestEntry\n): string[] {\n  const violations: string[] = [];\n  if (entry.surfaceIntent === \"system\" && entry.surfaces.mcp === \"public\") {\n    violations.push(\"system operations cannot be public MCP tools\");\n  }\n  if (\n    entry.surfaceIntent === \"compatibility\" &&\n    entry.surfaces.mcp !== \"none\"\n  ) {\n    violations.push(\"compatibility operations must not be MCP tools\");\n  }\n  if (entry.surfaceIntent === \"sdk_granular\" && entry.surfaces.mcp !== \"none\") {\n    violations.push(\"SDK-granular operations must not be MCP tools\");\n  }\n  if (\n    entry.surfaceIntent === \"mcp_governance\" &&\n    entry.surfaces.mcp === \"public\"\n  ) {\n    violations.push(\"governance operations must be internal or absent from MCP\");\n  }\n  return violations;\n}\n"]}
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type {\n  FunctionSurfaceIntent,\n  SurfaceClass,\n  SurfaceExposure,\n  FunctionSurfaceMap,\n} from \"./types.js\";\n\nexport type LucernOperationManifestEntry = {\n  name: string;\n  surfaceClass: SurfaceClass;\n  surfaceIntent: FunctionSurfaceIntent;\n  surfaces: FunctionSurfaceMap;\n  rationale: string;\n};\n\nconst publicEverywhere: FunctionSurfaceMap = {\n  sdk: \"public\",\n  rest: \"public\",\n  mcp: \"public\",\n  cli: \"public\",\n};\n\nconst internalSystem: FunctionSurfaceMap = {\n  sdk: \"internal\",\n  rest: \"internal\",\n  mcp: \"internal\",\n  cli: \"internal\",\n};\n\nconst publicWithInternalMcp: FunctionSurfaceMap = {\n  sdk: \"public\",\n  rest: \"public\",\n  mcp: \"internal\",\n  cli: \"public\",\n};\n\nconst publicWithoutMcp: FunctionSurfaceMap = {\n  sdk: \"public\",\n  rest: \"public\",\n  mcp: \"none\",\n  cli: \"none\",\n};\n\nconst sdkOnlyPublic: FunctionSurfaceMap = {\n  sdk: \"public\",\n  rest: \"none\",\n  mcp: \"none\",\n  cli: \"none\",\n};\n\nconst 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\"link_evidence_to_belief\",\n  \"link_evidence_to_question\",\n  \"create_question\",\n  \"get_question\",\n  \"list_questions\",\n  \"refine_question\",\n  \"update_question_status\",\n  \"archive_question\",\n  \"create_answer\",\n  \"get_answer\",\n  \"find_missing_questions\",\n  \"get_high_priority_questions\",\n  \"get_falsification_questions\",\n  \"create_topic\",\n  \"get_topic\",\n  \"list_topics\",\n  \"update_topic\",\n  \"get_topic_tree\",\n] as const;\n\nexport const MCP_ANALYSIS_PLATFORM_OPERATION_NAMES = [\n  \"create_edge\",\n  \"query_lineage\",\n  \"traverse_graph\",\n  \"get_graph_neighborhood\",\n  \"get_graph_structure_analysis\",\n  \"list_graph_intelligence_queries\",\n  \"run_graph_intelligence_query\",\n  \"find_contradictions\",\n  \"flag_contradiction\",\n  \"detect_confirmation_bias\",\n  \"get_topic_coverage\",\n  \"get_graph_gaps\",\n] as const;\n\nexport const MCP_ANALYSIS_TENANT_OPERATION_NAMES = [\n  \"analyze_topic_density\",\n  \"discover_entity_connections\",\n  \"trace_entity_impact\",\n] as const;\n\nexport const MCP_WORKFLOW_PLATFORM_OPERATION_NAMES = [\n  \"list_lenses\",\n  \"apply_lens_to_topic\",\n  \"remove_lens_from_topic\",\n  \"get_ontology\",\n  \"list_ontologies\",\n  \"apply_ontology\",\n  \"match_entity_type\",\n  \"resolve_effective_ontology\",\n  \"add_worktree\",\n  \"activate_worktree\",\n  \"list_worktrees\",\n  \"list_all_worktrees\",\n  \"list_campaigns\",\n  \"update_worktree_targets\",\n  \"update_worktree_metadata\",\n  \"create_task\",\n  \"list_tasks\",\n  \"update_task\",\n  \"complete_task\",\n] as const;\n\nexport const MCP_WORKFLOW_TENANT_OPERATION_NAMES = [\n  \"resolve_effective_ontology\",\n  \"get_observation_context\",\n  \"ingest_observation\",\n  \"merge\",\n] as const;\n\nexport const MCP_GOVERNANCE_PLATFORM_OPERATION_NAMES = [\n  \"create_lens\",\n  \"create_ontology\",\n  \"update_ontology\",\n  \"archive_ontology\",\n  \"create_ontology_version\",\n] as const;\n\nexport const MCP_GOVERNANCE_TENANT_OPERATION_NAMES = [\n  \"create_epistemic_contract\",\n  \"evaluate_contract\",\n  \"get_contract_status\",\n  \"publish_ontology_version\",\n  \"deprecate_ontology_version\",\n  \"manage_write_policy\",\n] as const;\n\nexport const MCP_AUTOMATION_OPERATION_NAMES = [\n  \"apply_auto_branching\",\n  \"trigger_belief_review\",\n] as const;\n\nexport const DUPLICATE_OPERATION_NAMES = [\n  \"link_evidence\",\n] as const;\n\nexport const PLATFORM_PUBLIC_OPERATION_NAMES = [\n  ...MCP_CORE_OPERATION_NAMES,\n  ...MCP_ANALYSIS_PLATFORM_OPERATION_NAMES,\n  ...MCP_WORKFLOW_PLATFORM_OPERATION_NAMES,\n  ...MCP_GOVERNANCE_PLATFORM_OPERATION_NAMES,\n  ...DUPLICATE_OPERATION_NAMES,\n] as const;\n\nexport const TENANT_PUBLIC_OPERATION_NAMES = [\n  ...MCP_ANALYSIS_TENANT_OPERATION_NAMES,\n  ...MCP_WORKFLOW_TENANT_OPERATION_NAMES,\n  ...MCP_GOVERNANCE_TENANT_OPERATION_NAMES,\n  ...MCP_AUTOMATION_OPERATION_NAMES,\n] as const;\n\nexport const PLATFORM_INTERNAL_OPERATION_NAMES = [\n  \"register_session\",\n  \"heartbeat_session\",\n  \"end_session\",\n  \"list_active_sessions\",\n  \"send_agent_message\",\n  \"broadcast_message\",\n  \"get_agent_inbox\",\n  \"claim_files\",\n  \"generate_session_handoff\",\n  \"record_scope_learning\",\n  \"pipeline_snapshot\",\n  \"seed_belief_lattice\",\n  \"get_lattice_coverage\",\n  \"get_code_context\",\n  \"get_change_history\",\n  \"get_failure_log\",\n  \"record_attempt\",\n  \"begin_build_session\",\n  \"push\",\n  \"open_pull_request\",\n  \"record_judgment\",\n  \"get_audit_trail\",\n] as const;\n\nexport const LEGACY_COMPAT_OPERATION_NAMES = [\n  \"discover\",\n  \"add_evidence\",\n  \"answer_question\",\n  \"get_confidence_history\",\n] as const;\n\nexport const SDK_ONLY_OPERATION_NAMES = [\n  \"start_worktree\",\n  \"update_worktree_phase\",\n  \"advance_worktree_phase\",\n  \"add_note_to_worktree\",\n  \"link_document_to_worktree\",\n  \"link_evidence_to_worktree\",\n  \"link_question_to_worktree\",\n  \"link_belief_to_worktree\",\n  \"create_synthesized_belief\",\n  \"complete_hypothesis_formation\",\n  \"complete_evidence_review\",\n  \"refine_worktree_belief\",\n  \"trace_provenance\",\n  \"get_belief_relationships\",\n  \"get_belief_support_chain\",\n  \"explore_connections\",\n  \"get_deep_lineage\",\n  \"graph_aware_search\",\n  \"get_collection_conviction\",\n  \"get_conviction_trend\",\n  \"analyze_belief_criticality\",\n  \"analyze_belief_cluster_candidates\",\n  \"create_belief_conditional\",\n  \"get_necessary_evidence\",\n  \"analyze_reasoning_depth\",\n  \"get_evidence_by_methodology\",\n  \"create_evidence_task\",\n  \"get_task_counts\",\n  \"add_research_action\",\n  \"get_predictions\",\n  \"get_surprise_detection\",\n  \"get_challenged_beliefs\",\n  \"get_causal_chains\",\n  \"get_non_consensus_beliefs\",\n  \"get_beliefs_by_epistemic_status\",\n  \"detect_anchoring_bias\",\n  \"detect_source_concentration\",\n  \"find_soft_contradictions\",\n  \"find_semantic_bridges\",\n  \"find_semantic_orphans\",\n] as const;\n\nexport const MCP_ONLY_INTERNAL_OPERATION_NAMES = [\n  \"evaluate_engineering_contract\",\n  \"evaluate_research_contract\",\n] as const;\n\nexport const FORBIDDEN_APPLICATION_OPERATION_NAMES = [\n  \"execute_deep_research\",\n  \"search_sources\",\n  \"search_resources\",\n  \"get_privileged_evidence\",\n  \"get_privileged_signals\",\n  \"get_thesis_artifacts\",\n] as const;\n\nexport const LUCERN_OPERATION_MANIFEST = {\n  ...entries(\n    MCP_CORE_OPERATION_NAMES,\n    \"platform_public\",\n    \"mcp_core\",\n    publicEverywhere,\n    \"Default conversational Lucern MCP primitive for reading, writing, and shaping the reasoning graph.\"\n  ),\n  ...entries(\n    MCP_ANALYSIS_PLATFORM_OPERATION_NAMES,\n    \"platform_public\",\n    \"mcp_analysis\",\n    publicEverywhere,\n    \"High-signal graph analysis operation that belongs in chat/MCP because users naturally ask for gaps, contradictions, lineage, and coverage.\"\n  ),\n  ...entries(\n    MCP_ANALYSIS_TENANT_OPERATION_NAMES,\n    \"tenant_public\",\n    \"mcp_analysis\",\n    publicEverywhere,\n    \"Tenant-scoped analysis operation that remains MCP-visible because agents can answer graph-quality and impact questions from chat.\"\n  ),\n  ...entries(\n    MCP_WORKFLOW_PLATFORM_OPERATION_NAMES,\n    \"platform_public\",\n    \"mcp_workflow\",\n    publicEverywhere,\n    \"Workflow operation expected by coding agents and human MCP users managing Lucern worktrees, tasks, lenses, and observations.\"\n  ),\n  ...entries(\n    MCP_WORKFLOW_TENANT_OPERATION_NAMES,\n    \"tenant_public\",\n    \"mcp_workflow\",\n    publicEverywhere,\n    \"Tenant-scoped workflow operation expected by coding agents and human MCP users managing observations and worktree lifecycle.\"\n  ),\n  ...entries(\n    MCP_AUTOMATION_OPERATION_NAMES,\n    \"tenant_public\",\n    \"mcp_analysis\",\n    publicEverywhere,\n    \"Tenant-scoped automation that remains MCP-visible because agents can explicitly request review or branching assistance.\"\n  ),\n  ...entries(\n    MCP_GOVERNANCE_PLATFORM_OPERATION_NAMES,\n    \"platform_public\",\n    \"mcp_governance\",\n    publicWithInternalMcp,\n    \"Governance/admin operation. SDK, REST, and CLI remain public, but MCP is internal by default to keep chat surfaces focused.\"\n  ),\n  ...entries(\n    MCP_GOVERNANCE_TENANT_OPERATION_NAMES,\n    \"tenant_public\",\n    \"mcp_governance\",\n    publicWithInternalMcp,\n    \"Governance/admin operation. SDK, REST, and CLI remain public, but MCP is internal by default to keep chat surfaces focused.\"\n  ),\n  ...entries(\n    DUPLICATE_OPERATION_NAMES,\n    \"platform_public\",\n    \"compatibility\",\n    publicWithoutMcp,\n    \"Duplicate compatibility operation kept for SDK/REST callers, removed from MCP/CLI discovery in favor of the canonical specific tool.\"\n  ),\n  ...entries(\n    PLATFORM_INTERNAL_OPERATION_NAMES,\n    \"platform_internal\",\n    \"system\",\n    internalSystem,\n    \"Lucern system/background operation. Available to platform code paths, hidden from public MCP discovery.\"\n  ),\n  ...entries(\n    LEGACY_COMPAT_OPERATION_NAMES,\n    \"legacy_compat\",\n    \"compatibility\",\n    publicWithoutMcp,\n    \"Temporary compatibility operation. Must name a canonical replacement before removal.\"\n  ),\n  ...entries(\n    SDK_ONLY_OPERATION_NAMES,\n    \"tenant_public\",\n    \"sdk_granular\",\n    sdkOnlyPublic,\n    \"Granular Lucern SDK operation. Not an MCP, REST, or CLI tool until backed by the generated function pipe.\"\n  ),\n  ...entries(\n    MCP_ONLY_INTERNAL_OPERATION_NAMES,\n    \"platform_internal\",\n    \"system\",\n    mcpOnlyInternal,\n    \"Lucern MCP-only platform operation for local agent/bootstrap or verification workflows. Hidden from public discovery.\"\n  ),\n} as const satisfies Record<string, LucernOperationManifestEntry>;\n\nexport type LucernOperationName = keyof typeof LUCERN_OPERATION_MANIFEST;\n\nexport function surfaceEnabled(exposure: SurfaceExposure): boolean {\n  return exposure !== \"none\";\n}\n\nexport function surfaceIntentGateViolations(\n  entry: LucernOperationManifestEntry\n): string[] {\n  const violations: string[] = [];\n  if (entry.surfaceIntent === \"system\" && entry.surfaces.mcp === \"public\") {\n    violations.push(\"system operations cannot be public MCP tools\");\n  }\n  if (\n    entry.surfaceIntent === \"compatibility\" &&\n    entry.surfaces.mcp !== \"none\"\n  ) {\n    violations.push(\"compatibility operations must not be MCP tools\");\n  }\n  if (entry.surfaceIntent === \"sdk_granular\" && entry.surfaces.mcp !== \"none\") {\n    violations.push(\"SDK-granular operations must not be MCP tools\");\n  }\n  if (\n    entry.surfaceIntent === \"mcp_governance\" &&\n    entry.surfaces.mcp === \"public\"\n  ) {\n    violations.push(\"governance operations must be internal or absent from MCP\");\n  }\n  return violations;\n}\n"]}

package/dist/function-registry/ontologies.js

@@ -1146,6 +1146,74 @@ var GET_GRAPH_STRUCTURE_ANALYSIS = {
   ontologyPrimitive: "graph",
   tier: "showcase"
 };
+var LIST_GRAPH_INTELLIGENCE_QUERIES = {
+  name: "list_graph_intelligence_queries",
+  description: "List the Graph Intelligence query catalog that powers structural graph analysis experiences. Returns categories, query IDs, prompt templates, modes, and the public tool plan each query can use.",
+  parameters: {
+    categoryId: {
+      type: "string",
+      description: "Optional category filter, such as problems or strategic"
+    },
+    mode: {
+      type: "string",
+      description: "Optional mode filter: core, bias, stress, operational, alpha, semantic, or evidence"
+    }
+  },
+  required: [],
+  response: {
+    description: "Graph Intelligence query catalog and mode-to-tool mapping",
+    fields: {
+      categories: "array \u2014 query categories",
+      queries: "array \u2014 query definitions with prompt templates and tools",
+      quickQueries: "array \u2014 recommended one-click query presets",
+      publicToolNamesByMode: "object \u2014 public tool names available to each Graph Intelligence mode"
+    }
+  },
+  ownerModule: "graph-intelligence",
+  ontologyPrimitive: "graph",
+  tier: "showcase"
+};
+var RUN_GRAPH_INTELLIGENCE_QUERY = {
+  name: "run_graph_intelligence_query",
+  description: "Run a named Graph Intelligence query against a tenant topic graph. Returns the selected query, prompt, deterministic graph-analysis bundle, graph context, and public tool plan for model synthesis.",
+  parameters: {
+    topicId: { type: "string", description: "Topic to analyze" },
+    queryId: {
+      type: "string",
+      description: "Graph Intelligence query ID, such as confirmation-bias, pre-mortem, or thesis-summary"
+    },
+    prompt: {
+      type: "string",
+      description: "Optional custom prompt for custom analysis runs"
+    },
+    input: {
+      type: "string",
+      description: "Optional entity, theme, belief, company, or search text for input-driven queries"
+    },
+    mode: {
+      type: "string",
+      description: "Optional mode override: core, bias, stress, operational, alpha, semantic, or evidence"
+    },
+    limit: {
+      type: "number",
+      description: "Maximum graph context rows to return"
+    }
+  },
+  required: ["topicId"],
+  response: {
+    description: "Graph Intelligence query result bundle ready for model or prompt-library synthesis",
+    fields: {
+      query: "object \u2014 selected query definition",
+      prompt: "string \u2014 resolved prompt template",
+      toolPlan: "array \u2014 public tools and args the model can call next",
+      analysis: "object \u2014 structure, coverage, gap, and confirmation-bias analysis",
+      context: "object \u2014 sampled beliefs, questions, evidence, edges, and contradictions"
+    }
+  },
+  ownerModule: "graph-intelligence",
+  ontologyPrimitive: "graph",
+  tier: "showcase"
+};
 var GET_FALSIFICATION_QUESTIONS = {
   name: "get_falsification_questions",
   description: "Generate Popperian falsification questions for beliefs. Like `git test` \u2014 identifies the questions most likely to disprove current beliefs. Karl Popper as a tool: surfaces what would need to be true to invalidate each belief.",
@@ -3721,6 +3789,8 @@ var MCP_TOOL_CONTRACTS = {
   // Graph intelligence (showcase)
   detect_confirmation_bias: DETECT_CONFIRMATION_BIAS,
   get_graph_structure_analysis: GET_GRAPH_STRUCTURE_ANALYSIS,
+  list_graph_intelligence_queries: LIST_GRAPH_INTELLIGENCE_QUERIES,
+  run_graph_intelligence_query: RUN_GRAPH_INTELLIGENCE_QUERY,
   get_falsification_questions: GET_FALSIFICATION_QUESTIONS,
   // Evidence operations (workhorse)
   search_evidence: SEARCH_EVIDENCE,
@@ -3903,6 +3973,8 @@ var MCP_ANALYSIS_PLATFORM_OPERATION_NAMES = [
   "traverse_graph",
   "get_graph_neighborhood",
   "get_graph_structure_analysis",
+  "list_graph_intelligence_queries",
+  "run_graph_intelligence_query",
   "find_contradictions",
   "flag_contradiction",
   "detect_confirmation_bias",