@lsbjordao/type-taxon-script 1.1.10 → 1.1.11

package/dist/export.js

@@ -12,6 +12,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ttsExport;
 const fs_1 = __importDefault(require("fs"));
 const path_1 = __importDefault(require("path"));
 const child_process_1 = require("child_process");
@@ -235,4 +236,3 @@ console.log(jsonData)
         }
     });
 }
-exports.default = ttsExport;

package/dist/exportOntology.js

@@ -15,13 +15,23 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
     function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
     return new (P || (P = Promise))(function (resolve, reject) {
@@ -35,6 +45,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ttsExportOntology;
 const fs_1 = __importDefault(require("fs"));
 const path_1 = __importDefault(require("path"));
 const fast_glob_1 = __importDefault(require("fast-glob"));
@@ -239,8 +250,8 @@ function serializeObject(writer, subject, object, objectTypeName, objectId, visi
     }
 }
 function buildOntologyTTL() {
-    var _a, _b, _c, _d, _e, _f, _g;
     return __awaiter(this, void 0, void 0, function* () {
+        var _a, _b, _c, _d, _e, _f, _g;
         const writer = createWriter();
         const modules = yield importModules('./characters/v1/**/*.ts');
         for (const { mod } of modules) {
@@ -285,8 +296,8 @@ function buildOntologyTTL() {
     });
 }
 function buildInstancesTTL(genus) {
-    var _a, _b;
     return __awaiter(this, void 0, void 0, function* () {
+        var _a, _b;
         const writer = createWriter();
         const modules = yield importModules(`./taxon/${genus}/**/*.ts`);
         const visited = new WeakSet();
@@ -353,4 +364,3 @@ function ttsExportOntology(genus) {
         console.log(`\x1b[1m\x1b[32m✔ Combined semantic graph exported: \x1b[33m${semanticPath}\x1b[0m`);
     });
 }
-exports.default = ttsExportOntology;

package/dist/exportSources.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ttsExportSources;
 const fs_1 = __importDefault(require("fs"));
 const lodash_1 = __importDefault(require("lodash"));
 function ttsExportSources(genus) {
@@ -60,4 +61,3 @@ function ttsExportSources(genus) {
         }
     });
 }
-exports.default = ttsExportSources;

package/dist/exportToCsv.js

@@ -12,6 +12,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ttsExportToCsv;
 const fs_1 = __importDefault(require("fs"));
 const path_1 = __importDefault(require("path"));
 const child_process_1 = require("child_process");
@@ -265,4 +266,3 @@ console.log(jsonData)
         }
     });
 }
-exports.default = ttsExportToCsv;

package/dist/findProperty.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ttsfindProperty;
 const fs_1 = __importDefault(require("fs"));
 const lodash_1 = __importDefault(require("lodash"));
 function ttsfindProperty(property, genus) {
@@ -55,4 +56,3 @@ function ttsfindProperty(property, genus) {
         }
     });
 }
-exports.default = ttsfindProperty;

package/dist/import.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ttsImportFromCsv;
 const fs_1 = __importDefault(require("fs"));
 const csv_parser_1 = __importDefault(require("csv-parser"));
 const mustache_1 = __importDefault(require("mustache"));
@@ -95,4 +96,3 @@ function ttsImportFromCsv(genus) {
         }
     });
 }
-exports.default = ttsImportFromCsv;

package/dist/init.js

@@ -15,14 +15,25 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ttsInit;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 function createInputCSVFiles() {
@@ -128,4 +139,3 @@ function ttsInit() {
         }
     });
 }
-exports.default = ttsInit;

package/dist/new.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ttsNewDesc;
 const fs_1 = __importDefault(require("fs"));
 const mustache_1 = __importDefault(require("mustache"));
 function ttsNewDesc(genus, species) {
@@ -44,4 +45,3 @@ function ttsNewDesc(genus, species) {
         console.error('An error occurred:', error);
     }
 }
-exports.default = ttsNewDesc;

package/dist/tts.js

@@ -10,7 +10,6 @@ const import_1 = __importDefault(require("./import"));
 const export_1 = __importDefault(require("./export"));
 const exportSources_1 = __importDefault(require("./exportSources"));
 const exportToCsv_1 = __importDefault(require("./exportToCsv"));
-const exportOntology_1 = __importDefault(require("./exportOntology"));
 const findProperty_1 = __importDefault(require("./findProperty"));
 yargs_1.default.version();
 yargs_1.default.command({
@@ -108,20 +107,6 @@ yargs_1.default.command({
         (0, exportToCsv_1.default)(argv.genus, argv.load);
     },
 });
-yargs_1.default.command({
-    command: 'exportOntology',
-    describe: 'Export ontology schema and RDF instances',
-    builder: {
-        genus: {
-            describe: 'Genus name',
-            demandOption: true,
-            type: 'string',
-        },
-    },
-    handler: (argv) => {
-        (0, exportOntology_1.default)(argv.genus);
-    },
-});
 yargs_1.default.command({
     command: 'findProperty',
     describe: 'Find a property',

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@lsbjordao/type-taxon-script",
-  "version": "1.1.10",
+  "version": "1.1.11",
   "author": "Lucas Jordão <tucarj@gmail.com> & André Eppinghaus <andreeppinghaus@gmail.com> & Vicente Calfo <vicentecalfo@gmail.com>",
   "license": "ISC",
   "description": "TypeTaxonScript",

package/dist/src/export.js

@@ -1,238 +0,0 @@
-"use strict";
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = ttsExport;
-const fs_1 = __importDefault(require("fs"));
-const path_1 = __importDefault(require("path"));
-const child_process_1 = require("child_process");
-const csv_parser_1 = __importDefault(require("csv-parser"));
-const cli_spinner_1 = require("cli-spinner");
-function deleteJSFiles(folderPath) {
-    return __awaiter(this, void 0, void 0, function* () {
-        try {
-            const files = yield fs_1.default.promises.readdir(folderPath);
-            for (const file of files) {
-                if (file.endsWith('.js')) {
-                    yield fs_1.default.promises.unlink(`${folderPath}/${file}`);
-                }
-            }
-        }
-        catch (err) {
-            console.error('Error deleting files:', err);
-        }
-    });
-}
-function ttsExport(genus, load) {
-    return __awaiter(this, void 0, void 0, function* () {
-        if (genus === '') {
-            console.error('\x1b[31m✖ Argument `--genus` cannot be empty.\x1b[0m');
-            return;
-        }
-        if (!fs_1.default.existsSync('./input') && !fs_1.default.existsSync('./output')) {
-            console.error("\x1b[31m✖ The ./input and ./output directories are not present within the project.\x1b[0m\n\x1b[36mℹ️ Please run \x1b[33m`tts init`\x1b[36m before attempting to export a database.\x1b[0m");
-            return;
-        }
-        const spinner = new cli_spinner_1.Spinner('\x1b[36mProcessing... %s\x1b[0m');
-        spinner.setSpinnerString('|/-\\'); // spinner sequence
-        spinner.start();
-        const taxa = [];
-        fs_1.default.mkdirSync('./temp', { recursive: true });
-        if (load === 'all') {
-            const directoryPath = `./taxon/${genus}/`;
-            fs_1.default.readdir(directoryPath, (err, files) => {
-                if (err) {
-                    spinner.stop();
-                    console.error('Error reading directory:', err);
-                    process.exit();
-                }
-                const taxa = files
-                    .filter(file => file.endsWith('.ts') && file !== 'index.ts')
-                    .map(file => path_1.default.parse(file).name);
-                const importStatements = taxa.map((species) => {
-                    return `import { ${species.replace(/\s/g, '_').replace(/\-([a-z])/, (_, match) => match.toUpperCase())} } from '../taxon/${genus}/${species.replace(/\s/g, '_')}'`;
-                }).join('\n');
-                const speciesCall = taxa.map((species) => {
-                    return `    ${species.replace(/\s/g, '_').replace(/\-([a-z])/, (_, match) => match.toUpperCase())},`;
-                }).join('\n');
-                const fileContent = `// Import genus ${genus}
-import { ${genus} } from '../taxon/${genus}'
-            
-// Import species of ${genus}
-${importStatements}
-            
-const ${genus}_species: ${genus}[] = [
-    ${speciesCall}
-]
-            
-// Export ${genus}DB.json
-//import { writeFileSync } from 'fs'
-const jsonData = JSON.stringify(${genus}_species);
-console.log(jsonData)
-//const inputFilePath = '../output/${genus}DB.json'
-//writeFileSync(inputFilePath, jsonData, 'utf-8')
-//console.log('\\x1b[1m\\x1b[32m✔ Process finished.\\x1b[0m')`;
-                const tempFilePath = './temp/exportTemp.ts';
-                fs_1.default.writeFileSync(tempFilePath, fileContent, 'utf-8');
-                const fileToTranspile = 'exportTemp';
-                (0, child_process_1.exec)(`tsc ./temp/${fileToTranspile}.ts`, (error, stdout, stderr) => {
-                    if (stdout) {
-                        spinner.stop();
-                        console.error('\x1b[31m✖ TS Error:\x1b[0m\n\n' + `${stdout}`);
-                        process.exit();
-                    }
-                    if (stderr) {
-                        spinner.stop();
-                        console.error('\x1b[31m✖ TS Error:\x1b[0m\n\n' + `${stderr}`);
-                        process.exit();
-                    }
-                    try {
-                        fs_1.default.unlinkSync(`./temp/${fileToTranspile}.ts`);
-                    }
-                    catch (err) {
-                        spinner.stop();
-                        console.error(`An error occurred while deleting the file: ${err}`);
-                        process.exit();
-                    }
-                    (0, child_process_1.exec)(`node ./temp/${fileToTranspile}.js > ./output/${genus}DB.json`, (error, stdout, stderr) => {
-                        // if (error) {
-                        //     spinner.stop()
-                        //     console.error('\x1b[31m✖ JS execution time error:\x1b[0m\n\n' + `${error.message}`)
-                        //     process.exit()
-                        // }
-                        if (stdout) {
-                            spinner.stop();
-                            console.error('\x1b[31m✖ JS execution time error:\x1b[0m\n\n' + `${stdout}`);
-                            process.exit();
-                        }
-                        if (stderr) {
-                            spinner.stop();
-                            console.error('\x1b[31m✖ JS execution time error:\x1b[0m\n\n' + `${stderr}`);
-                            process.exit();
-                        }
-                        deleteJSFiles(`./taxon/${genus}`).then(() => {
-                            const filePath = './output/';
-                            console.log(`\x1b[1m\x1b[32m✔ JSON database exported: \x1b[33m${filePath}${genus}DB.json\x1b[0m\x1b[1m\x1b[32m\x1b[0m`);
-                            spinner.stop();
-                            try {
-                                fs_1.default.unlinkSync(`./temp/${fileToTranspile}.js`);
-                                fs_1.default.rm('./temp', { recursive: true }, (err) => {
-                                    if (err) {
-                                        console.error('Error deleting directory:', err);
-                                        process.exit();
-                                    }
-                                });
-                            }
-                            catch (err) {
-                                console.error(`An error occurred while deleting the file: ${err}`);
-                                process.exit();
-                            }
-                        });
-                    });
-                });
-            });
-        }
-        if (load === 'csv') {
-            const inputFilePath = './input/taxaToExport.csv';
-            const tempFilePath = './temp/exportTemp.ts';
-            fs_1.default.createReadStream(inputFilePath)
-                .pipe((0, csv_parser_1.default)({ headers: false }))
-                .on('data', (data) => {
-                taxa.push(data['0']);
-            })
-                .on('end', () => __awaiter(this, void 0, void 0, function* () {
-                const importStatements = taxa.map((species) => {
-                    return `import { ${species.replace(/\s/g, '_').replace(/\-([a-z])/, (_, match) => match.toUpperCase())} } from '../taxon/${genus}/${species.replace(/\s/g, '_')}'`;
-                }).join('\n');
-                const speciesCall = taxa.map((species) => {
-                    return `    ${species.replace(/\s/g, '_').replace(/\-([a-z])/, (_, match) => match.toUpperCase())},`;
-                }).join('\n');
-                const fileContent = `// Import genus ${genus}
-import { ${genus} } from '../taxon/${genus}'
-                
-// Import species of ${genus}
-${importStatements}
-                
-const ${genus}_species: ${genus}[] = [
-    ${speciesCall}
-]
-                
-// Export ${genus}DB.json
-const jsonData = JSON.stringify(${genus}_species);
-console.log(jsonData)
-// import { writeFileSync } from 'fs'
-// const jsonData = JSON.stringify(${genus}_species)
-// const inputFilePath = '../output/${genus}DB.json'
-// writeFileSync(inputFilePath, jsonData, 'utf-8')
-// console.log('\\x1b[1m\\x1b[32m✔ Process finished.\\x1b[0m')`;
-                fs_1.default.writeFileSync(tempFilePath, fileContent, 'utf-8');
-                const fileToTranspile = 'exportTemp';
-                (0, child_process_1.exec)(`tsc ./temp/${fileToTranspile}.ts`, (error, stdout, stderr) => {
-                    if (stdout) {
-                        spinner.stop();
-                        console.error('\x1b[31m✖ TS Error:\x1b[0m\n\n' + `${stdout}`);
-                        process.exit();
-                    }
-                    if (stderr) {
-                        spinner.stop();
-                        console.error('\x1b[31m✖ TS Error:\x1b[0m\n\n' + `${stdout}`);
-                        process.exit();
-                    }
-                    try {
-                        fs_1.default.unlinkSync(`./temp/${fileToTranspile}.ts`);
-                    }
-                    catch (err) {
-                        spinner.stop();
-                        console.error(`An error occurred while deleting the file: ${err}`);
-                        process.exit();
-                    }
-                    (0, child_process_1.exec)(`node ./temp/${fileToTranspile}.js > ./output/${genus}DB.json`, (error, stdout, stderr) => {
-                        // if (error) {
-                        //     spinner.stop()
-                        //     console.error('\x1b[31m✖ JS execution time error:\x1b[0m\n\n' + `${error.message}`)
-                        //     process.exit()
-                        // }
-                        if (stdout) {
-                            spinner.stop();
-                            console.error('\x1b[31m✖ JS execution time error:\x1b[0m\n\n' + `${stdout}`);
-                            process.exit();
-                        }
-                        if (stderr) {
-                            spinner.stop();
-                            console.error('\x1b[31m✖ JS execution time error:\x1b[0m\n\n' + `${stderr}`);
-                            process.exit();
-                        }
-                        deleteJSFiles(`./taxon/${genus}`).then(() => {
-                            const filePath = './output/';
-                            console.log(`\x1b[1m\x1b[32m✔ JSON database exported: \x1b[33m${filePath}${genus}DB.json\x1b[0m\x1b[1m\x1b[32m\x1b[0m`);
-                            spinner.stop();
-                            try {
-                                fs_1.default.unlinkSync(`./temp/${fileToTranspile}.js`);
-                                fs_1.default.rm('./temp', { recursive: true }, (err) => {
-                                    if (err) {
-                                        console.error('Error deleting directory:', err);
-                                        process.exit();
-                                    }
-                                });
-                            }
-                            catch (err) {
-                                console.error(`An error occurred while deleting the file: ${err}`);
-                                process.exit();
-                            }
-                        });
-                    });
-                });
-            }));
-        }
-    });
-}