@lore-co/cli 0.2.33 → 0.2.34

package/README.md

@@ -28,9 +28,12 @@ lore doctor
 
 The package requires Node.js 22 or newer and installs the `lore` command.
 
+For IBM Bob, run `lore connect --login --folder . --agent bob`, then restart
+Bob. Bob Shell reads the same settings.
+
 In Connect, **This project** asks your agent to confirm the current folder. **Choose another project** offers a native folder picker, GitHub selection, and manual path entry. The CLI also supports `--current-project` (interactive confirmation), `--choose-folder` (a picker on this machine), and `--repository github.com/owner/repo` alongside a folder choice to verify its Git origin. Cancelling or choosing a mismatched checkout stops setup before recording. GitHub selection does not change workspace policy.
 
-Run setup from the project you want to record: `--folder .` includes that folder and its subfolders. Repeat `--folder <path>` for additional folders, or choose `--all-projects` explicitly. New connections stay paused without a capture choice; reconnecting without one preserves your existing rules. Existing exclusions remain in effect. Add `--no-capture` (or run `lore capture off`) for retrieval-only mode: context, Guard, `lore ask`, and `lore remember` without automatic turn recording; `lore capture on` turns it back on. Use `lore scope check <folder>` to verify. Learning repository scope controls where knowledge applies and is separate from capture scope.
+Run setup from the project you want to record: `--folder .` includes that folder and its subfolders. Run it again in each project you want Lore in: every `--folder` adds to the saved folders, `--replace-folders` records only in the folders given, and `--all-projects` records everywhere the workspace allows. New connections stay paused without a capture choice; reconnecting without one preserves your existing rules. Existing exclusions remain in effect. Add `--no-capture` (or run `lore capture off`) for retrieval-only mode: context, Guard, `lore ask`, and `lore remember` without automatic turn recording; `lore capture on` turns it back on. Use `lore scope check <folder>` to verify. Learning repository scope controls where knowledge applies and is separate from capture scope.
 
 ### Windows
 
@@ -282,7 +285,8 @@ your agent afterwards. Setup replaces the previous `lore-remember` skill with
 Claude Code also supports `/lore`; Codex supports `$lore`.
 
 The skill is installed in `~/.agents/skills/lore` for Codex, Cursor, Copilot and
-OpenCode, and in the configured Claude directory's `skills/lore`. Cowork and
+OpenCode, in the configured Claude directory's `skills/lore`, and in
+`~/.bob/skills/lore` for IBM Bob, where `/recap` is also available. Cowork and
 Copilot bundles include it too. Polytoken does not receive a skill installation.
 
 Installation paths follow the official [Codex](https://developers.openai.com/codex/skills),
@@ -321,6 +325,11 @@ OpenCode now also registers the Lore MCP server (`~/.copilot/mcp-config.json`,
 `mcp.lore` in `opencode.json`) so the agent has its tools. See
 [Lore as an agent](../../docs/guides/lore-agent.md).
 
+VS Code 1.143 and later runs Copilot chat through the Copilot CLI, which loads
+the Copilot CLI hooks together with a repository's `.github/hooks`. On a machine
+with Copilot CLI connected, the `copilot-vscode` repository hook stands down so
+each prompt reaches Lore once, and `lore doctor` says so.
+
 ## Save knowledge manually
 
 ```sh
@@ -427,7 +436,7 @@ content-free `guard_check` audit event.
 
 ```sh
 lore update
-lore update --version v0.2.33
+lore update --version v0.2.34
 ```
 
 `update` resolves the latest release to an exact tag, or uses the exact
@@ -450,7 +459,7 @@ receive timestamped backups, and customer-edited skill files are preserved with
 a warning. The report is by agent and lists only what you need to do:
 
 ```text
-✓ Lore 0.2.33 is installed
+✓ Lore 0.2.34 is installed
 ✓ Updated Lore for Claude Code and Codex
 
 Next
@@ -823,7 +832,7 @@ same-repository, non-draft pull requests bearing the corresponding
 `lore:codex-review` or `lore:devin-review` label.
 
 Generated jobs require a published standalone binary release and default to
-`treadiehq/lore-releases` at `v0.2.33`. Set `LORE_CLI_REPOSITORY` to the publicly
+`treadiehq/lore-releases` at `v0.2.34`. Set `LORE_CLI_REPOSITORY` to the publicly
 readable `owner/repository` and `LORE_CLI_VERSION` to an existing release tag
 when using another release source.
 

package/dist/capture-scope.d.ts

@@ -3,6 +3,8 @@ export interface CaptureScopeOptions {
     folders?: readonly string[];
     allProjects?: boolean;
     repository?: string;
+    /** --replace-folders: record only in the folders given, dropping the saved ones. Without it, --folder adds to them. */
+    replaceFolders?: boolean;
 }
 /** Validate the choice on the recording machine before installing any hooks. */
 export declare function captureDirectories(options: CaptureScopeOptions, home: string, cwd?: string): Promise<DirectoryRules | null | undefined>;

package/dist/capture-scope.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"capture-scope.d.ts","sourceRoot":"","sources":["../src/capture-scope.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,uBAAuB,CAAC;AAE5D,MAAM,WAAW,mBAAmB;IAClC,OAAO,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IAC5B,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,uHAAuH;IACvH,cAAc,CAAC,EAAE,OAAO,CAAC;CAC1B;AAED,gFAAgF;AAChF,wBAAsB,kBAAkB,CAAC,OAAO,EAAE,mBAAmB,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,SAAgB,GAAG,OAAO,CAAC,cAAc,GAAG,IAAI,GAAG,SAAS,CAAC,CAiBpJ;AAID,mFAAmF;AACnF,wBAAsB,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAIhF;AAED,wBAAsB,uBAAuB,CAAC,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAI/F"}

package/dist/capture-scope.js

@@ -10,6 +10,8 @@ export async function captureDirectories(options, home, cwd = process.cwd()) {
         throw new Error("--repository needs a GitHub repository and a local --folder or --choose-folder selection.");
     if (options.allProjects && options.folders !== undefined)
         throw new Error("Use --folder or --all-projects, not both.");
+    if (options.replaceFolders && (options.allProjects || options.folders === undefined))
+        throw new Error("--replace-folders needs --folder, --current-project, or --choose-folder.");
     if (options.allProjects)
         return null;
     if (options.folders === undefined)

package/dist/capture-scope.js.map

@@ -1 +1 @@
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package/dist/cli.d.ts

@@ -11,9 +11,11 @@ import { type ReliabilityStoreInspection } from "./reliability-store.js";
 export declare const LORE_OPENCODE_PLUGIN = "@lore-co/opencode";
 export declare const DEFAULT_HOSTED_API_URL = "https://api.uselore.co";
 export declare const DEFAULT_HOSTED_DASHBOARD_URL = "https://uselore.co";
-declare const CONFIGURED_AGENT_NAMES: readonly ["claude", "codex", "copilot-cli", "copilot-vscode", "cursor", "opencode", "polytoken"];
+declare const CONFIGURED_AGENT_NAMES: readonly ["bob", "claude", "codex", "copilot-cli", "copilot-vscode", "cursor", "opencode", "polytoken"];
 export type ConfiguredAgentName = (typeof CONFIGURED_AGENT_NAMES)[number];
 export type ConnectAgentName = ConfiguredAgentName | "copilot" | "cowork" | "devin" | "generic" | "t3code";
+/** Agents whose hooks file takes Claude Code's `hooks` shape. */
+type ClaudeShapedHookAgent = Extract<CommandHookAgentName, "bob" | "claude" | "codex" | "copilot-vscode">;
 /** Capture mode of a connection: absent means on. */
 export declare function captureEnabled(config: Pick<ConnectorConfig, "capture"> | null | undefined): boolean;
 export interface LorePaths {
@@ -31,6 +33,7 @@ export interface LorePaths {
     runtimePackage: string;
     state: string;
     queue: string;
+    bobSettings: string;
     codexHooks: string;
     copilotCliHooks: string;
     copilotVscodeHooks: string;
@@ -87,7 +90,7 @@ interface ExternalSurfaceStatus {
     capabilities: DeepReadonly<ReliabilityIntegrationManifest["capabilities"]>;
 }
 export declare function getLorePaths(home?: string, environment?: NodeJS.ProcessEnv, cwd?: string): LorePaths;
-export declare function mergeLoreHooks(input: Record<string, unknown>, agent: CommandHookAgentName, paths: LorePaths, capture?: boolean): Record<string, unknown>;
+export declare function mergeLoreHooks(input: Record<string, unknown>, agent: ClaudeShapedHookAgent, paths: LorePaths, capture?: boolean): Record<string, unknown>;
 export declare function removeLoreHooks(input: Record<string, unknown>): Record<string, unknown>;
 export declare function countLoreHooks(input: Record<string, unknown>): number;
 export declare function mergeLoreCursorMcp(input: unknown, paths: LorePaths): Record<string, unknown>;
@@ -192,6 +195,8 @@ export interface ConnectResult {
         mode: "on" | "off";
         folders: string[] | null;
         excludedFolders: string[];
+        /** Set when this run chose folders for a saved connection: its folders before, null for all projects. */
+        previousFolders?: string[] | null;
     };
     skillFiles: string[];
     /** Lore agent definitions installed for the connected harnesses. */

package/dist/cli.d.ts.map

@@ -1 +1 @@
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package/dist/cli.js

@@ -22,7 +22,7 @@ import { basename, dirname, resolve, sep } from "node:path";
 import { homedir, hostname, platform } from "node:os";
 import { setTimeout as delay } from "node:timers/promises";
 import { fileURLToPath, pathToFileURL } from "node:url";
-import { CLAUDE_RELIABILITY_INTEGRATION, CODEX_RELIABILITY_INTEGRATION, COPILOT_CLI_RELIABILITY_INTEGRATION, COPILOT_CLOUD_MCP_RELIABILITY_INTEGRATION, COPILOT_VSCODE_PREVIEW_RELIABILITY_INTEGRATION, CreateDeviceAuthorizationResponseSchema, CURSOR_RELIABILITY_INTEGRATION, NATIVE_CODING_AGENT_NAMES, OPENCODE_RELIABILITY_INTEGRATION, OperationalMetricsResponseSchema, PollDeviceAuthorizationResponseSchema, POLYTOKEN_RELIABILITY_INTEGRATION, RELIABILITY_INTEGRATION_CONTRACT_VERSION, ReliabilityInvocationRecordSchema, WorkspaceIdentityResponseSchema, canonicalJson, deriveReliabilityInvocationHealth, isNativeCodingAgent, } from "@lore-co/core";
+import { BOB_RELIABILITY_INTEGRATION, CLAUDE_RELIABILITY_INTEGRATION, CODEX_RELIABILITY_INTEGRATION, COPILOT_CLI_RELIABILITY_INTEGRATION, COPILOT_CLOUD_MCP_RELIABILITY_INTEGRATION, COPILOT_VSCODE_PREVIEW_RELIABILITY_INTEGRATION, CreateDeviceAuthorizationResponseSchema, CURSOR_RELIABILITY_INTEGRATION, NATIVE_CODING_AGENT_NAMES, OPENCODE_RELIABILITY_INTEGRATION, OperationalMetricsResponseSchema, PollDeviceAuthorizationResponseSchema, POLYTOKEN_RELIABILITY_INTEGRATION, RELIABILITY_INTEGRATION_CONTRACT_VERSION, ReliabilityInvocationRecordSchema, WorkspaceIdentityResponseSchema, canonicalJson, deriveReliabilityInvocationHealth, isNativeCodingAgent, } from "@lore-co/core";
 import { runHook, } from "./runtime.js";
 import { readInvocationHealthWriteInput, runInvocationHealthWrite, } from "./invocation-health-writer.js";
 import { runAskCommand } from "./ask.js";
@@ -69,6 +69,11 @@ const HOOK_EVENTS = [
     "Stop",
     "SessionEnd",
 ];
+/** IBM Bob's lifecycle hooks: the Claude Code shape, without SessionEnd. */
+const BOB_HOOK_EVENTS = ["UserPromptSubmit", "PreToolUse", "Stop"];
+function claudeShapedHookEvents(agent) {
+    return agent === "bob" ? BOB_HOOK_EVENTS : HOOK_EVENTS;
+}
 /**
  * Hook events that exist only to record turns. Retrieval-only mode leaves them
  * uninstalled, so the agent never hands a response to Lore at all.
@@ -85,6 +90,11 @@ export function captureEnabled(config) {
 }
 /** Tools the Context Guard PreToolUse hook cares about (regex matcher). */
 const GUARD_TOOL_MATCHER = "Edit|Write|MultiEdit|NotebookEdit|ApplyPatch|apply_patch|edit|write|patch|str_replace_editor|Bash|bash|Shell|shell|exec_command|shell_command|run_terminal_cmd";
+/** IBM Bob's file-writing and command tools (extension 2.2.3); Bob matches the regex against the tool name. */
+const BOB_GUARD_TOOL_MATCHER = "^(write_file|apply_diff|insert_content|search_and_replace|execute_command)$";
+function guardToolMatcher(agent) {
+    return agent === "bob" ? BOB_GUARD_TOOL_MATCHER : GUARD_TOOL_MATCHER;
+}
 const CURSOR_HOOK_EVENTS = [
     "sessionStart",
     "beforeSubmitPrompt",
@@ -115,6 +125,7 @@ const EXTERNAL_SURFACES = [
 const AGENT_MANIFESTS = {
     claude: CLAUDE_RELIABILITY_INTEGRATION,
     codex: CODEX_RELIABILITY_INTEGRATION,
+    bob: BOB_RELIABILITY_INTEGRATION,
     "copilot-cli": COPILOT_CLI_RELIABILITY_INTEGRATION,
     "copilot-vscode": COPILOT_VSCODE_PREVIEW_RELIABILITY_INTEGRATION,
     cursor: CURSOR_RELIABILITY_INTEGRATION,
@@ -133,7 +144,8 @@ Options:
   --current-project    Confirm and record the current Git project
   --choose-folder      Open a folder picker on this machine
   --repository <repo>  Verify the selected folder matches this GitHub repository
-  --folder <path>        Record only in this folder and subfolders (repeatable)
+  --folder <path>        Also record in this folder and subfolders (repeatable)
+  --replace-folders      With --folder: record only in the folders given, dropping saved ones
   --all-projects         Record in all projects allowed by your workspace
   --no-capture           Retrieval-only mode: context, guard, and manual saves, no turn recording
   --capture              Turn automatic turn recording back on
@@ -142,7 +154,7 @@ Options:
   --login               Approve access securely in the Lore dashboard
   --no-open             Print the approval URL without opening a browser
   --token <token>       Workspace bearer token (or LORE_WORKSPACE_TOKEN/LORE_TOKEN)
-  --agent <name>        claude, codex, copilot, copilot-cli, copilot-vscode, cowork, cursor, devin, generic, opencode, polytoken, or t3code
+  --agent <name>        bob, claude, codex, copilot, copilot-cli, copilot-vscode, cowork, cursor, devin, generic, opencode, polytoken, or t3code
   --agent-id <id>       With --agent generic: credit MCP saves to this agent (default: generic)
   --write               With --agent generic: let the agent save through MCP (saves stay proposals)
   --timeout-ms <ms>     Hook request timeout, 250-10000 (default: 2500)
@@ -153,6 +165,8 @@ Options:
   --help                Show this command's help
 
 New connections stay paused until you choose a project, a folder, or --all-projects.
+Each --folder adds to the folders the connection records. Only --replace-folders
+drops saved folders, and the summary names each one it dropped.
 Reconnecting without a capture option keeps your saved folder rules and capture mode.
 Folder choices control where Lore runs; learning scope controls where knowledge applies.
 With --no-capture, Lore installs no Stop or SessionEnd hooks and sends no turns.
@@ -261,6 +275,7 @@ export function getLorePaths(home, environment = process.env, cwd = process.cwd(
         runtimePackage: resolve(loreDirectory, "bin", "package.json"),
         state: resolve(loreDirectory, "state"),
         queue: resolve(loreDirectory, "queue"),
+        bobSettings: resolve(resolvedHome, ".bob", "settings", "settings.json"),
         codexHooks: resolve(resolvedHome, ".codex", "hooks.json"),
         copilotCliHooks: resolve(copilotHome, "hooks", "lore.json"),
         copilotVscodeHooks: resolve(environment.LORE_COPILOT_VSCODE_HOOKS?.trim() ||
@@ -347,6 +362,9 @@ function hookTimeout(seconds) {
     return isWindows() ? Math.max(seconds, 10) : seconds;
 }
 function eventHandler(agent, event, paths) {
+    // Bob documents only type, command, matcher and timeout, and drops a hooks
+    // file its schema rejects, so its entries carry nothing undocumented.
+    const documented = agent === "bob";
     return {
         type: "command",
         command: hookCommand(agent, paths),
@@ -357,10 +375,10 @@ function eventHandler(agent, event, paths) {
                 : event === "PreToolUse"
                     ? 10
                     : 25),
-        ...(event === "UserPromptSubmit"
+        ...(event === "UserPromptSubmit" && !documented
             ? { statusMessage: "Loading Lore context" }
             : {}),
-        ...(event === "PreToolUse"
+        ...(event === "PreToolUse" && !documented
             ? { statusMessage: "Checking Lore guard" }
             : {}),
     };
@@ -371,7 +389,7 @@ export function mergeLoreHooks(input, agent, paths, capture = true) {
         throw new Error("Agent configuration field \"hooks\" must be a JSON object");
     }
     const hooks = isObject(result.hooks) ? { ...result.hooks } : {};
-    const installed = installedEvents(HOOK_EVENTS, capture);
+    const installed = installedEvents(claudeShapedHookEvents(agent), capture);
     for (const event of HOOK_EVENTS) {
         if (hooks[event] !== undefined && !Array.isArray(hooks[event])) {
             throw new Error(`Agent hook event "${event}" must be a JSON array`);
@@ -380,7 +398,7 @@ export function mergeLoreHooks(input, agent, paths, capture = true) {
             ...stripLoreFromEvent(hooks[event]),
             ...(installed.includes(event) ? [{
                     // Guard checks run only for mutation-shaped tools.
-                    ...(event === "PreToolUse" ? { matcher: GUARD_TOOL_MATCHER } : {}),
+                    ...(event === "PreToolUse" ? { matcher: guardToolMatcher(agent) } : {}),
                     hooks: [eventHandler(agent, event, paths)],
                 }] : []),
         ];
@@ -492,6 +510,9 @@ function loreMcpInvocation() {
 export function mcpConfigPath(agent, hooksPath) {
     const directory = dirname(hooksPath);
     switch (agent) {
+        case "bob":
+            // ~/.bob/settings/settings.json pairs with ~/.bob/settings/mcp.json.
+            return resolve(directory, "mcp.json");
         case "claude":
             // ~/.claude/settings.json pairs with ~/.claude.json; a CLAUDE_CONFIG_DIR keeps both inside it.
             return basename(directory) === ".claude"
@@ -888,14 +909,14 @@ function commandHookInstallationUnits(input, agent, paths, index, total, capture
         throw new Error(`${agent} configuration field "hooks" must be an object`);
     }
     const hooks = isObject(configuration.hooks) ? configuration.hooks : {};
-    return installedEvents(HOOK_EVENTS, capture).map((event) => {
+    return installedEvents(claudeShapedHookEvents(agent), capture).map((event) => {
         const groups = hooks[event];
         if (groups !== undefined && !Array.isArray(groups)) {
             throw new Error(`${agent} hook event "${event}" must be an array`);
         }
         const candidates = Array.isArray(groups) ? groups : [];
         const expected = {
-            ...(event === "PreToolUse" ? { matcher: GUARD_TOOL_MATCHER } : {}),
+            ...(event === "PreToolUse" ? { matcher: guardToolMatcher(agent) } : {}),
             hooks: [eventHandler(agent, event, paths)],
         };
         const ownedCount = candidates.reduce((count, candidate) => {
@@ -1027,6 +1048,7 @@ function openCodeInstallationUnits(input, paths, index, total) {
 }
 function inspectInstallationUnits(input, agent, paths, index, total, capture) {
     switch (agent) {
+        case "bob":
         case "claude":
         case "codex":
             return commandHookInstallationUnits(input, agent, paths, index, total, capture);
@@ -1347,6 +1369,26 @@ async function pathExists(path) {
         return false;
     }
 }
+/**
+ * IBM Bob: the desktop app bundle, or the `bob` (Bob Shell) and `bobide`
+ * launchers on PATH. Bob installs the app in the platform's applications
+ * folder and does not document a launcher, so the bundle is checked too.
+ */
+async function bobAvailable(paths) {
+    if ((await commandExists("bob")) || (await commandExists("bobide")))
+        return true;
+    const environment = process.env;
+    const candidates = platform() === "darwin"
+        ? ["/Applications/IBM Bob.app", resolve(paths.home, "Applications", "IBM Bob.app")]
+        : isWindows()
+            ? [environment.LOCALAPPDATA, environment.ProgramFiles, environment["ProgramFiles(x86)"]]
+                .flatMap((root) => root ? [resolve(root, "Programs", "IBM Bob"), resolve(root, "IBM Bob")] : [])
+            : ["/usr/share/ibm-bob", "/usr/share/bob", "/opt/IBM Bob", "/opt/ibm-bob", "/usr/lib/ibm-bob"];
+    for (const candidate of candidates)
+        if (await pathExists(candidate))
+            return true;
+    return false;
+}
 async function cursorAvailable(paths) {
     return ((await commandExists("cursor")) ||
         (await pathExists(paths.cursorUserData)));
@@ -1358,6 +1400,21 @@ function objectConfiguration(input, agent) {
     return input;
 }
 const AGENT_TARGETS = {
+    bob: {
+        integration: "hooks",
+        // Three native hooks plus the Lore MCP server entry.
+        expected: (capture) => installedEvents(BOB_HOOK_EVENTS, capture).length + 1,
+        runtimeRequired: true,
+        emptyValue: () => ({}),
+        configPath: (paths) => paths.bobSettings,
+        // Bob creates ~/.bob/settings on its first run; the app bundle alone does
+        // not mean it is used in this home.
+        detect: async (paths) => (await commandExists("bob")) || (await commandExists("bobide")) || pathExists(dirname(paths.bobSettings)),
+        executable: bobAvailable,
+        merge: (input, paths, capture) => mergeLoreHooks(objectConfiguration(input, "bob"), "bob", paths, capture),
+        remove: (input) => removeLoreHooks(objectConfiguration(input, "bob")),
+        count: (input) => countLoreHooks(objectConfiguration(input, "bob")),
+    },
     claude: {
         integration: "hooks",
         // Native hooks plus the Lore MCP server entry.
@@ -2043,6 +2100,10 @@ function parseConnectArguments(args) {
             parsed.allProjects = true;
             continue;
         }
+        if (argument === "--replace-folders") {
+            parsed.replaceFolders = true;
+            continue;
+        }
         if (argument === "--write") {
             parsed.writeTools = true;
             continue;
@@ -2098,7 +2159,7 @@ function parseConnectArguments(args) {
             parsed.agents.push(value);
         }
         else {
-            throw new Error("--agent must be claude, codex, copilot, copilot-cli, copilot-vscode, cowork, cursor, devin, generic, opencode, polytoken, or t3code");
+            throw new Error("--agent must be bob, claude, codex, copilot, copilot-cli, copilot-vscode, cowork, cursor, devin, generic, opencode, polytoken, or t3code");
         }
     }
     validateConnectProjectOptions(parsed);
@@ -2170,7 +2231,7 @@ async function connectWithCredentialLocked(options, identity) {
             : await authenticatedIdentity(existing.apiUrl, existing.token, timeoutMs).catch(() => undefined)
         : undefined;
     const directories = await captureDirectories(options, paths.home, options.cwd);
-    const connection = await prepareConnection(paths, identity, { apiUrl, token, ...(directories === undefined ? {} : { directories }), ...(options.connectionName ? { connectionName: options.connectionName } : {}) }, previousIdentity);
+    const connection = await prepareConnection(paths, identity, { apiUrl, token, ...(directories === undefined ? {} : { directories }), ...(options.replaceFolders ? { replaceFolders: true } : {}), ...(options.connectionName ? { connectionName: options.connectionName } : {}) }, previousIdentity);
     await secureWindowsDirectory(paths.loreDirectory);
     const recoveryEnv = options.home === undefined ? process.env : { ...process.env, ZDOTDIR: paths.home };
     let recoveryWarning;
@@ -2223,7 +2284,7 @@ async function connectWithCredentialLocked(options, identity) {
     // An MCP-only agent has no hooks or settings Lore can edit; it gets the skills and a printed entry.
     const genericAgent = options.agents.includes(GENERIC_AGENT) ? options.genericAgent ?? { id: GENERIC_AGENT, writeTools: false } : undefined;
     if (agents.length === 0 && credentialOnlyAgents.length === 0 && genericAgent === undefined) {
-        throw new Error("No Claude, Codex, Copilot CLI, Cursor, OpenCode, or Polytoken installation detected. Use --agent <name>; T3 Code users can use --agent t3code, and Devin CLI users --agent devin.");
+        throw new Error("No Claude, Codex, Copilot CLI, Cursor, IBM Bob, OpenCode, or Polytoken installation detected. Use --agent <name>; T3 Code users can use --agent t3code, and Devin CLI users --agent devin.");
     }
     const now = new Date();
     // Reconnecting without a capture option keeps the saved mode, like folder rules.
@@ -2285,6 +2346,7 @@ async function connectWithCredentialLocked(options, identity) {
     const loreAgent = await installLoreAgent(paths, installations);
     if (genericAgent)
         await recordGenericAgent(paths.loreDirectory, genericAgent, now);
+    const folder = await firstMessageFolder(options.cwd ?? process.cwd(), config.directories, paths.home);
     // An unchanged reconnect: same server, credential, and workspace, every
     // configured agent was already configured, and no agent file was rewritten.
     const alreadyConnected = existing !== null &&
@@ -2304,12 +2366,15 @@ async function connectWithCredentialLocked(options, identity) {
     const codexNeedsApproval = !installedAgents.includes("codex") &&
         changedHookFiles.some((path) => codexHookPaths.includes(path));
     return {
-        capture: { mode: capture ? "on" : "off", folders: config.directories?.include ?? null, excludedFolders: config.directories?.exclude ?? [] },
+        capture: {
+            mode: capture ? "on" : "off", folders: config.directories?.include ?? null, excludedFolders: config.directories?.exclude ?? [],
+            ...(directories === undefined || connection.previousRules === undefined ? {} : { previousFolders: connection.previousRules === null ? null : connection.previousRules.include }),
+        },
         skillFiles: skills.files,
         agentFiles: loreAgent.files,
         ...(genericAgent ? { genericAgent: {
                 ...genericAgent,
-                mcpServers: genericMcpServers(loreMcpInvocation(), paths.home, genericAgent).mcpServers,
+                mcpServers: genericMcpServers(loreMcpInvocation(), paths.home, genericAgent, folder).mcpServers,
                 instructions: genericInstructions(genericAgent.id, skills.files.filter((file) => file.startsWith(resolve(paths.home, ".agents", "skills")))),
             } } : {}),
         connected: true,
@@ -2320,11 +2385,14 @@ async function connectWithCredentialLocked(options, identity) {
         keptAgents,
         alreadyConnected,
         ...(knownDashboardUrl === undefined ? {} : { dashboardUrl: knownDashboardUrl }),
-        folder: await firstMessageFolder(options.cwd ?? process.cwd(), config.directories, paths.home),
+        folder,
         config: paths.config,
         changedHookFiles,
         backups,
-        warnings: [...skills.warnings, ...loreAgent.warnings, ...(connection.needsFolders ? [`Lore is off for ${config.connectionName} until you choose where to record. Reconnect with --folder <path> or --all-projects, or run lore config open --connection ${config.connectionName}.`] : []), ...requestedExpansion.warnings, ...hostRecoveryWarnings, ...(codexNeedsApproval
+        warnings: [...skills.warnings, ...loreAgent.warnings, ...(connection.needsFolders ? [`Lore is off for ${config.connectionName} until you choose where to record. Reconnect with --folder <path> or --all-projects, or run lore config open --connection ${config.connectionName}.`] : []),
+            // Folders chosen for a connection that already covers all projects change nothing.
+            ...(directories && config.directories === undefined ? [`${config.connectionName} already covers all projects, including ${listText(directories.include)}. Add --replace-folders to record only there.`] : []),
+            ...requestedExpansion.warnings, ...hostRecoveryWarnings, ...(codexNeedsApproval
                 ? [CODEX_APPROVAL_WARNING]
                 : [])],
         ...(recoveryNotice ? { recoveryNotice } : {}),
@@ -2476,6 +2544,8 @@ async function acknowledgeDeviceAuthorization(apiUrl, authorization) {
 /** The exact step each agent needs before Lore records its first turn. */
 export function connectNextStep(agent) {
     switch (agent) {
+        case "bob":
+            return "Restart IBM Bob.";
         case "claude":
             return "Restart Claude Code and allow the lore MCP server when it asks.";
         case "codex":
@@ -2514,6 +2584,7 @@ const CODEX_APPROVAL_WARNING = "Codex requires hook approval. Open /hooks in Cod
 /** Product names for human output; --json keeps the agent ids. */
 export function agentDisplayName(agent) {
     switch (agent) {
+        case "bob": return "IBM Bob";
         case "claude": return "Claude Code";
         case "codex": return "Codex";
         case "copilot":
@@ -2569,6 +2640,11 @@ export function formatConnectResult(result, options = {}) {
         ? `Already connected to ${result.identity.workspaceName}, nothing changed`
         : `Connected to ${result.identity.workspaceName}`);
     out.note(`${records ? "Recording in" : "Lore runs in"} ${shownFolders}${excluded}${out.separator}${mode}`);
+    // Folders this run stopped recording in, so a replaced list never turns Lore off somewhere silently.
+    const previous = result.capture.previousFolders;
+    const stopped = previous === undefined || folders === null ? [] : previous === null ? ["other projects"] : previous.filter((folder) => !folders.includes(folder)).map((folder) => out.path(folder));
+    if (stopped.length)
+        out.note(`${records ? "No longer recording in" : "Lore no longer runs in"} ${listText(stopped)}.`);
     if (generic !== undefined && !nothingRecords)
         out.note(`${generic.id} is MCP-only: Lore saves only what you ask it to.`);
     // One row per agent: set up in this run first, then the ones kept as they were.
@@ -3739,7 +3815,22 @@ async function doctorCommand(args) {
             detail: IS_STANDALONE_BINARY ? process.execPath : paths.runtime,
         });
     }
+    // The Copilot runtime behind Copilot CLI and VS Code 1.143+ loads both the
+    // user-level hooks and a repository's .github/hooks, so the repository hook
+    // stands down wherever the CLI hooks file holds Lore hooks (the runtime's
+    // copilotCliHooksServeHost check); their own row reports their health.
+    const copilotCliHooks = status.agents.find((item) => item.agent === "copilot-cli");
+    const copilotCliServesVsCode = copilotCliHooks?.configured === true &&
+        !["missing", "invalid"].includes(copilotCliHooks.installation.state);
     for (const agent of status.agents.filter((item) => item.configured)) {
+        if (agent.agent === "copilot-vscode" && copilotCliServesVsCode) {
+            checks.push({
+                name: "copilot-vscode-hooks",
+                status: "ok",
+                detail: "standing down: the Copilot CLI hooks on this machine handle VS Code too, so each prompt reaches Lore once",
+            });
+            continue;
+        }
         checks.push({
             name: `${agent.agent}-executable`,
             status: agent.executable ? "ok" : "warning",