@lobu/cli 3.0.3 → 3.0.4

package/dist/commands/chat.d.ts

@@ -0,0 +1,11 @@
+/**
+ * `lobu chat "prompt"` — send a prompt to an agent and stream the response.
+ *
+ * Requires `lobu dev` running. Connects to the local gateway,
+ * creates a session, sends the message, streams output, then exits.
+ */
+export declare function chatCommand(cwd: string, prompt: string, options: {
+    agent?: string;
+    gateway?: string;
+}): Promise<void>;
+//# sourceMappingURL=chat.d.ts.map

package/dist/commands/chat.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"chat.d.ts","sourceRoot":"","sources":["../../src/commands/chat.ts"],"names":[],"mappings":"AAOA;;;;;GAKG;AACH,wBAAsB,WAAW,CAC/B,GAAG,EAAE,MAAM,EACX,MAAM,EAAE,MAAM,EACd,OAAO,EAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,OAAO,CAAC,EAAE,MAAM,CAAA;CAAE,GAC5C,OAAO,CAAC,IAAI,CAAC,CAgFf"}

package/dist/commands/chat.js

@@ -0,0 +1,195 @@
+import { readFile } from "node:fs/promises";
+import { join } from "node:path";
+import chalk from "chalk";
+import { getToken } from "../api/credentials.js";
+import { isLoadError, loadConfig } from "../config/loader.js";
+import { renderMarkdown } from "../utils/markdown.js";
+/**
+ * `lobu chat "prompt"` — send a prompt to an agent and stream the response.
+ *
+ * Requires `lobu dev` running. Connects to the local gateway,
+ * creates a session, sends the message, streams output, then exits.
+ */
+export async function chatCommand(cwd, prompt, options) {
+    const gatewayUrl = (options.gateway ?? (await resolveGatewayUrl(cwd))).replace(/\/$/, "");
+    // Resolve auth token: CLI JWT (from `lobu login`) → ADMIN_PASSWORD env var
+    const authToken = (await getToken()) ?? process.env.ADMIN_PASSWORD;
+    if (!authToken) {
+        console.error(chalk.red("\n  Authentication required. Run `lobu login` or set ADMIN_PASSWORD.\n"));
+        process.exit(1);
+    }
+    // Resolve agent ID from flag or first agent in lobu.toml
+    const agentId = options.agent ?? (await resolveAgentId(cwd));
+    // 1. Create agent session
+    const createRes = await fetch(`${gatewayUrl}/api/v1/agents`, {
+        method: "POST",
+        headers: {
+            "Content-Type": "application/json",
+            Authorization: `Bearer ${authToken}`,
+        },
+        body: JSON.stringify({ agentId }),
+    });
+    if (!createRes.ok) {
+        const body = await createRes.text().catch(() => "");
+        if (createRes.status === 401) {
+            console.error(chalk.red("\n  Authentication required. Run `lobu login` or set ADMIN_PASSWORD.\n"));
+            process.exit(1);
+        }
+        console.error(chalk.red(`\n  Failed to create session (${createRes.status}): ${body}\n`));
+        process.exit(1);
+    }
+    const session = (await createRes.json());
+    // Build URLs from gateway flag (returned URLs may point to a public domain)
+    const base = `${gatewayUrl}/api/v1/agents/${session.agentId}`;
+    const sseUrl = `${base}/events`;
+    const messagesUrl = `${base}/messages`;
+    // 2. Open SSE connection before sending message so we don't miss events
+    const sseController = new AbortController();
+    const streaming = streamResponse(sseUrl, session.token, sseController);
+    // 3. Send the prompt
+    const msgRes = await fetch(messagesUrl, {
+        method: "POST",
+        headers: {
+            "Content-Type": "application/json",
+            Authorization: `Bearer ${session.token}`,
+        },
+        body: JSON.stringify({ content: prompt }),
+    });
+    if (!msgRes.ok) {
+        sseController.abort();
+        const body = await msgRes.text().catch(() => "");
+        console.error(chalk.red(`\n  Failed to send message (${msgRes.status}): ${body}\n`));
+        process.exit(1);
+    }
+    // 4. Wait for streaming to complete
+    await streaming;
+}
+async function resolveAgentId(cwd) {
+    const result = await loadConfig(cwd);
+    if (isLoadError(result)) {
+        console.error(chalk.red(`\n  ${result.error}\n`));
+        return process.exit(1);
+    }
+    const ids = Object.keys(result.config.agents);
+    if (ids.length === 0) {
+        console.error(chalk.red("\n  No agents found in lobu.toml\n"));
+        return process.exit(1);
+    }
+    return ids[0];
+}
+/**
+ * Connect to SSE, print deltas to stdout, resolve on complete/error.
+ */
+async function streamResponse(sseUrl, token, controller) {
+    const OVERALL_TIMEOUT_MS = 5 * 60 * 1000;
+    const IDLE_TIMEOUT_MS = 60 * 1000;
+    const overallTimer = setTimeout(() => controller.abort(), OVERALL_TIMEOUT_MS);
+    let idleTimer = setTimeout(() => controller.abort(), IDLE_TIMEOUT_MS);
+    const resetIdleTimer = () => {
+        clearTimeout(idleTimer);
+        idleTimer = setTimeout(() => controller.abort(), IDLE_TIMEOUT_MS);
+    };
+    try {
+        const res = await fetch(sseUrl, {
+            headers: { Authorization: `Bearer ${token}` },
+            signal: controller.signal,
+        });
+        if (!res.ok || !res.body) {
+            console.error(chalk.red(`\n  SSE connection failed (${res.status})\n`));
+            process.exit(1);
+        }
+        const reader = res.body.getReader();
+        const decoder = new TextDecoder();
+        let buffer = "";
+        let currentEvent = "";
+        while (true) {
+            const { done, value } = await reader.read();
+            if (done)
+                break;
+            resetIdleTimer();
+            buffer += decoder.decode(value, { stream: true });
+            const lines = buffer.split("\n");
+            buffer = lines.pop() ?? "";
+            for (const line of lines) {
+                if (line.startsWith("event: ")) {
+                    currentEvent = line.slice(7).trim();
+                }
+                else if (line.startsWith("data: ") && currentEvent) {
+                    const data = parseJSON(line.slice(6));
+                    if (!data)
+                        continue;
+                    switch (currentEvent) {
+                        case "output":
+                            if (typeof data.content === "string")
+                                process.stdout.write(renderMarkdown(data.content));
+                            break;
+                        case "ephemeral":
+                            if (typeof data.content === "string") {
+                                console.error(`\n${renderMarkdown(data.content)}\n`);
+                            }
+                            controller.abort();
+                            process.exit(1);
+                            break;
+                        case "complete":
+                            process.stdout.write("\n");
+                            controller.abort();
+                            return;
+                        case "error":
+                            process.stdout.write("\n");
+                            console.error(chalk.red(`\n  Agent error: ${String(data.error)}\n`));
+                            controller.abort();
+                            process.exit(1);
+                    }
+                    currentEvent = "";
+                }
+                else if (line === "") {
+                    currentEvent = "";
+                }
+            }
+        }
+    }
+    catch (err) {
+        // AbortError is expected when we call controller.abort() on complete
+        if (err instanceof Error && err.name === "AbortError")
+            return;
+        throw err;
+    }
+    finally {
+        clearTimeout(overallTimer);
+        clearTimeout(idleTimer);
+    }
+}
+function parseJSON(str) {
+    try {
+        const parsed = JSON.parse(str);
+        if (parsed && typeof parsed === "object" && !Array.isArray(parsed)) {
+            return parsed;
+        }
+        return null;
+    }
+    catch {
+        return null;
+    }
+}
+async function resolveGatewayUrl(cwd) {
+    try {
+        const envContent = await readFile(join(cwd, ".env"), "utf-8");
+        for (const line of envContent.split("\n")) {
+            const trimmed = line.trim();
+            if (trimmed.startsWith("GATEWAY_PORT=")) {
+                let port = trimmed.slice("GATEWAY_PORT=".length);
+                if ((port.startsWith('"') && port.endsWith('"')) ||
+                    (port.startsWith("'") && port.endsWith("'"))) {
+                    port = port.slice(1, -1);
+                }
+                if (port)
+                    return `http://localhost:${port}`;
+            }
+        }
+    }
+    catch {
+        // No .env file
+    }
+    return "http://localhost:8080";
+}
+//# sourceMappingURL=chat.js.map

package/dist/commands/chat.js.map

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package/dist/commands/context.d.ts

@@ -0,0 +1,8 @@
+export declare function contextListCommand(): Promise<void>;
+export declare function contextCurrentCommand(): Promise<void>;
+export declare function contextAddCommand(options: {
+    name: string;
+    apiUrl: string;
+}): Promise<void>;
+export declare function contextUseCommand(name: string): Promise<void>;
+//# sourceMappingURL=context.d.ts.map

package/dist/commands/context.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/context.js

@@ -0,0 +1,46 @@
+import chalk from "chalk";
+import { addContext, getCurrentContextName, loadContextConfig, resolveContext, setCurrentContext, } from "../api/context.js";
+export async function contextListCommand() {
+    const config = await loadContextConfig();
+    const currentContext = await getCurrentContextName();
+    console.log(chalk.bold("\n  Lobu contexts"));
+    for (const [name, context] of Object.entries(config.contexts)) {
+        const marker = name === currentContext ? chalk.green(" *") : "  ";
+        console.log(`${marker} ${name}  ${chalk.dim(context.apiUrl)}`);
+    }
+    if (process.env.LOBU_CONTEXT || process.env.LOBU_API_URL) {
+        console.log(chalk.dim("\n  Environment override is active."));
+        if (process.env.LOBU_CONTEXT) {
+            console.log(chalk.dim(`  LOBU_CONTEXT=${process.env.LOBU_CONTEXT}`));
+        }
+        if (process.env.LOBU_API_URL) {
+            console.log(chalk.dim(`  LOBU_API_URL=${process.env.LOBU_API_URL}`));
+        }
+    }
+    console.log();
+}
+export async function contextCurrentCommand() {
+    const context = await resolveContext();
+    console.log(chalk.bold("\n  Current context"));
+    console.log(chalk.dim(`  Name: ${context.name}`));
+    console.log(chalk.dim(`  API URL: ${context.apiUrl}`));
+    if (context.source === "env") {
+        console.log(chalk.dim("  Source: environment override"));
+    }
+    console.log();
+}
+export async function contextAddCommand(options) {
+    await addContext(options.name, options.apiUrl);
+    console.log(chalk.green(`\n  Saved context ${options.name} -> ${options.apiUrl}\n`));
+}
+export async function contextUseCommand(name) {
+    const trimmedName = name.trim();
+    const config = await setCurrentContext(trimmedName);
+    const context = config.contexts[trimmedName];
+    if (!context) {
+        throw new Error(`Context ${trimmedName} was not found after update.`);
+    }
+    console.log(chalk.green(`\n  Switched to context ${trimmedName}`));
+    console.log(chalk.dim(`  API URL: ${context.apiUrl}\n`));
+}
+//# sourceMappingURL=context.js.map

package/dist/commands/context.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"context.js","sourceRoot":"","sources":["../../src/commands/context.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAC;AAC1B,OAAO,EACL,UAAU,EACV,qBAAqB,EACrB,iBAAiB,EACjB,cAAc,EACd,iBAAiB,GAClB,MAAM,mBAAmB,CAAC;AAE3B,MAAM,CAAC,KAAK,UAAU,kBAAkB;IACtC,MAAM,MAAM,GAAG,MAAM,iBAAiB,EAAE,CAAC;IACzC,MAAM,cAAc,GAAG,MAAM,qBAAqB,EAAE,CAAC;IAErD,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAC,CAAC;IAC7C,KAAK,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC;QAC9D,MAAM,MAAM,GAAG,IAAI,KAAK,cAAc,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QAClE,OAAO,CAAC,GAAG,CAAC,GAAG,MAAM,IAAI,IAAI,KAAK,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;IACjE,CAAC;IAED,IAAI,OAAO,CAAC,GAAG,CAAC,YAAY,IAAI,OAAO,CAAC,GAAG,CAAC,YAAY,EAAE,CAAC;QACzD,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,qCAAqC,CAAC,CAAC,CAAC;QAC9D,IAAI,OAAO,CAAC,GAAG,CAAC,YAAY,EAAE,CAAC;YAC7B,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,kBAAkB,OAAO,CAAC,GAAG,CAAC,YAAY,EAAE,CAAC,CAAC,CAAC;QACvE,CAAC;QACD,IAAI,OAAO,CAAC,GAAG,CAAC,YAAY,EAAE,CAAC;YAC7B,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,kBAAkB,OAAO,CAAC,GAAG,CAAC,YAAY,EAAE,CAAC,CAAC,CAAC;QACvE,CAAC;IACH,CAAC;IAED,OAAO,CAAC,GAAG,EAAE,CAAC;AAChB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,qBAAqB;IACzC,MAAM,OAAO,GAAG,MAAM,cAAc,EAAE,CAAC;IAEvC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC,CAAC;IAC/C,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,WAAW,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;IAClD,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,cAAc,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;IACvD,IAAI,OAAO,CAAC,MAAM,KAAK,KAAK,EAAE,CAAC;QAC7B,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,gCAAgC,CAAC,CAAC,CAAC;IAC3D,CAAC;IACD,OAAO,CAAC,GAAG,EAAE,CAAC;AAChB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,iBAAiB,CAAC,OAGvC;IACC,MAAM,UAAU,CAAC,OAAO,CAAC,IAAI,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;IAC/C,OAAO,CAAC,GAAG,CACT,KAAK,CAAC,KAAK,CAAC,qBAAqB,OAAO,CAAC,IAAI,OAAO,OAAO,CAAC,MAAM,IAAI,CAAC,CACxE,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,iBAAiB,CAAC,IAAY;IAClD,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC;IAChC,MAAM,MAAM,GAAG,MAAM,iBAAiB,CAAC,WAAW,CAAC,CAAC;IACpD,MAAM,OAAO,GAAG,MAAM,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC;IAE7C,IAAI,CAAC,OAAO,EAAE,CAAC;QACb,MAAM,IAAI,KAAK,CAAC,WAAW,WAAW,8BAA8B,CAAC,CAAC;IACxE,CAAC;IAED,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,2BAA2B,WAAW,EAAE,CAAC,CAAC,CAAC;IACnE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,cAAc,OAAO,CAAC,MAAM,IAAI,CAAC,CAAC,CAAC;AAC3D,CAAC"}

package/dist/commands/dev.d.ts

@@ -1,13 +1,6 @@
 /**
  * `lobu dev` — smart wrapper around `docker compose up`.
- * Reads lobu.toml, seeds .env + MCP config, then passes all args through.
- *
- * Examples:
- *   lobu dev                    → docker compose up
- *   lobu dev -d                 → docker compose up -d
- *   lobu dev --build            → docker compose up --build
- *   lobu dev -d --build         → docker compose up -d --build
- *   lobu dev --force-recreate   → docker compose up --force-recreate
+ * Reads lobu.toml, seeds .env + agents manifest, then passes all args through.
  */
 export declare function devCommand(cwd: string, passthroughArgs: string[]): Promise<void>;
 //# sourceMappingURL=dev.d.ts.map

package/dist/commands/dev.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"dev.d.ts","sourceRoot":"","sources":["../../src/commands/dev.ts"],"names":[],"mappings":"AAQA;;;;;;;;;;GAUG;AACH,wBAAsB,UAAU,CAC9B,GAAG,EAAE,MAAM,EACX,eAAe,EAAE,MAAM,EAAE,GACxB,OAAO,CAAC,IAAI,CAAC,CA4Ff"}
+{"version":3,"file":"dev.d.ts","sourceRoot":"","sources":["../../src/commands/dev.ts"],"names":[],"mappings":"AAkBA;;;GAGG;AACH,wBAAsB,UAAU,CAC9B,GAAG,EAAE,MAAM,EACX,eAAe,EAAE,MAAM,EAAE,GACxB,OAAO,CAAC,IAAI,CAAC,CA0If"}

package/dist/commands/dev.js

@@ -1,20 +1,13 @@
-import { mkdir, readFile, writeFile } from "node:fs/promises";
-import { join } from "node:path";
 import { spawn } from "node:child_process";
+import { mkdir, readFile, writeFile } from "node:fs/promises";
+import { basename, join, resolve } from "node:path";
 import chalk from "chalk";
 import ora from "ora";
-import { isLoadError, loadConfig } from "../config/loader.js";
-import { transformConfig } from "../config/transformer.js";
+import { loadSkillsRegistry } from "../commands/skills/registry.js";
+import { isLoadError, loadAgentMarkdown, loadConfig, loadSkillFiles, } from "../config/loader.js";
 /**
  * `lobu dev` — smart wrapper around `docker compose up`.
- * Reads lobu.toml, seeds .env + MCP config, then passes all args through.
- *
- * Examples:
- *   lobu dev                    → docker compose up
- *   lobu dev -d                 → docker compose up -d
- *   lobu dev --build            → docker compose up --build
- *   lobu dev -d --build         → docker compose up -d --build
- *   lobu dev --force-recreate   → docker compose up --force-recreate
+ * Reads lobu.toml, seeds .env + agents manifest, then passes all args through.
  */
 export async function devCommand(cwd, passthroughArgs) {
     const result = await loadConfig(cwd);
@@ -31,8 +24,9 @@ export async function devCommand(cwd, passthroughArgs) {
     const { config } = result;
     const spinner = ora("Preparing local dev environment...").start();
     try {
-        const { envVars, mcpConfig } = transformConfig(config);
-        // Write .env from lobu.toml-derived vars (merge with existing .env to preserve secrets)
+        const lobuDir = join(cwd, ".lobu");
+        await mkdir(lobuDir, { recursive: true });
+        // Parse .env first so we can resolve $VAR references in lobu.toml
         const envPath = join(cwd, ".env");
         let existingEnv = "";
         try {
@@ -41,45 +35,64 @@ export async function devCommand(cwd, passthroughArgs) {
         catch {
             // No existing .env, start fresh
         }
-        const existingVars = parseEnvFile(existingEnv);
-        // Existing vars take precedence — user's .env secrets aren't overwritten
-        const mergedVars = { ...envVars, ...existingVars };
-        const envContent = Object.entries(mergedVars)
-            .map(([k, v]) => `${k}=${v}`)
-            .join("\n");
-        await writeFile(envPath, envContent + "\n");
-        // Write MCP config if needed
-        if (mcpConfig) {
-            const lobuDir = join(cwd, ".lobu");
-            await mkdir(lobuDir, { recursive: true });
-            await writeFile(join(lobuDir, "mcp.config.json"), JSON.stringify({ mcpServers: mcpConfig }, null, 2));
-        }
-        // Load IDENTITY.md, SOUL.md, USER.md if they exist
-        await seedMarkdownFiles(cwd, mergedVars);
+        const dotenvVars = parseEnvFile(existingEnv);
+        const { manifest, envVars } = await buildManifest(cwd, config.agents, dotenvVars);
+        await writeFile(join(lobuDir, "agents.json"), JSON.stringify(manifest, null, 2));
+        // Merge derived vars into existing .env (preserves comments and formatting)
+        await mergeEnvFile(envPath, existingEnv, envVars);
         spinner.succeed("Environment prepared from lobu.toml");
         // Check for docker-compose.yml
-        const composePath = join(cwd, "docker-compose.yml");
         try {
-            await readFile(composePath, "utf-8");
+            await readFile(join(cwd, "docker-compose.yml"), "utf-8");
         }
         catch {
             console.log(chalk.yellow("\n  No docker-compose.yml found. Run `lobu init` to generate one.\n"));
             process.exit(1);
         }
-        // Pass everything through to docker compose up
-        console.log(chalk.cyan(`\n  Starting ${config.agent.name}...\n`));
-        const composeArgs = ["compose", "up", ...passthroughArgs];
-        const child = spawn("docker", composeArgs, {
-            cwd,
-            stdio: "inherit",
-        });
-        child.on("error", (err) => {
+        const fallbackPort = dotenvVars.GATEWAY_PORT || "8080";
+        console.log(chalk.cyan(`\n  Starting ${manifest.agents.length} agent(s)...\n`));
+        const explicitDetach = passthroughArgs.includes("-d") || passthroughArgs.includes("--detach");
+        // Always start detached so we can print the banner before logs
+        const upArgs = explicitDetach
+            ? ["compose", "up", ...passthroughArgs]
+            : ["compose", "up", "-d", ...passthroughArgs];
+        const up = spawn("docker", upArgs, { cwd, stdio: "inherit" });
+        up.on("error", (err) => {
             console.error(chalk.red(`\n  Failed to start docker compose: ${err.message}`));
             console.log(chalk.dim("  Make sure Docker Desktop is running.\n"));
             process.exit(1);
         });
-        child.on("exit", (code) => {
-            process.exit(code ?? 0);
+        up.on("exit", (code) => {
+            if (code !== 0) {
+                process.exit(code ?? 1);
+            }
+            // Detect actual host port from the running container
+            const portProbe = spawn("docker", ["compose", "port", "gateway", "8080"], { cwd, stdio: ["ignore", "pipe", "ignore"] });
+            let portOutput = "";
+            portProbe.stdout.on("data", (data) => {
+                portOutput += data.toString();
+            });
+            portProbe.on("exit", () => {
+                const match = portOutput.trim().match(/:(\d+)$/);
+                const port = match ? match[1] : fallbackPort;
+                const gatewayUrl = `http://localhost:${port}`;
+                console.log(chalk.green("\n  Lobu is running!\n"));
+                console.log(chalk.cyan(`  Admin page:    ${gatewayUrl}/agents`));
+                console.log(chalk.dim(`\n  Stop:          docker compose down`));
+                if (explicitDetach) {
+                    console.log(chalk.dim(`  View logs:     docker compose logs -f gateway\n`));
+                    process.exit(0);
+                }
+                console.log(chalk.dim(`  Ctrl+C stops log tail, containers keep running.\n`));
+                // Tail only gateway logs (skip redis noise)
+                const logs = spawn("docker", ["compose", "logs", "-f", "gateway"], {
+                    cwd,
+                    stdio: "inherit",
+                });
+                logs.on("exit", (logCode) => {
+                    process.exit(logCode ?? 0);
+                });
+            });
         });
     }
     catch (err) {
@@ -89,26 +102,156 @@ export async function devCommand(cwd, passthroughArgs) {
     }
 }
 /**
- * Read IDENTITY.md, SOUL.md, USER.md and add their content as env vars
- * so the gateway can seed agent settings on startup.
+ * Build agents manifest and merged env vars from [agents.*] config.
  */
-async function seedMarkdownFiles(cwd, envVars) {
-    const files = [
-        { path: "IDENTITY.md", envKey: "AGENT_IDENTITY_MD" },
-        { path: "SOUL.md", envKey: "AGENT_SOUL_MD" },
-        { path: "USER.md", envKey: "AGENT_USER_MD" },
-    ];
-    for (const { path, envKey } of files) {
-        try {
-            const content = await readFile(join(cwd, path), "utf-8");
-            if (content.trim()) {
-                envVars[envKey] = content.trim();
+async function buildManifest(cwd, agents, dotenvVars) {
+    const entries = [];
+    const rootSkillsDir = join(cwd, "skills");
+    const registrySkills = new Map(loadSkillsRegistry().map((skill) => [skill.id, skill]));
+    for (const [agentId, agentConfig] of Object.entries(agents)) {
+        const agentDir = resolve(cwd, agentConfig.dir);
+        const markdown = await loadAgentMarkdown(agentDir);
+        const skillFiles = await loadSkillFiles([
+            rootSkillsDir,
+            join(agentDir, "skills"),
+        ]);
+        const systemSkills = agentConfig.skills.enabled
+            .map((skillId) => registrySkills.get(skillId))
+            .filter((skill) => !!skill)
+            .map((skill) => ({
+            repo: `system/${skill.id}`,
+            name: skill.name,
+            description: skill.description,
+            enabled: true,
+            system: true,
+            content: "",
+            integrations: skill.integrations?.map((integration) => ({
+                id: integration.id,
+                label: integration.label,
+                authType: integration.authType,
+                scopesConfig: integration.scopesConfig,
+                apiDomains: integration.apiDomains,
+            })),
+            mcpServers: skill.mcpServers?.map((mcp) => ({
+                id: mcp.id,
+                name: mcp.name,
+                url: mcp.url,
+                type: mcp.type,
+                command: mcp.command,
+                args: mcp.args,
+            })),
+            nixPackages: skill.nixPackages,
+            permissions: skill.permissions,
+            providers: skill.providers?.length ? [skill.id] : undefined,
+        }));
+        const localSkills = skillFiles.map((skillFile) => ({
+            repo: `local/${skillFile.name}`,
+            name: skillFile.name,
+            content: skillFile.content,
+            enabled: true,
+        }));
+        const entry = {
+            agentId,
+            name: agentConfig.name,
+            description: agentConfig.description,
+            settings: { ...markdown },
+        };
+        if (agentConfig.providers.length > 0) {
+            entry.settings.installedProviders = agentConfig.providers.map((p) => ({
+                providerId: p.id,
+            }));
+            entry.settings.modelSelection = { mode: "auto" };
+            const providerModelPreferences = Object.fromEntries(agentConfig.providers
+                .filter((provider) => !!provider.model?.trim())
+                .map((provider) => [provider.id, provider.model.trim()]));
+            if (Object.keys(providerModelPreferences).length > 0) {
+                entry.settings.providerModelPreferences = providerModelPreferences;
             }
         }
-        catch {
-            // File doesn't exist, skip
+        if (systemSkills.length > 0 || localSkills.length > 0) {
+            entry.settings.skillsConfig = {
+                skills: [...systemSkills, ...localSkills],
+            };
         }
+        if (agentConfig.network) {
+            entry.settings.networkConfig = {
+                allowedDomains: agentConfig.network.allowed,
+                deniedDomains: agentConfig.network.denied,
+            };
+        }
+        if (agentConfig.worker?.nix_packages?.length) {
+            entry.settings.nixConfig = {
+                packages: agentConfig.worker.nix_packages,
+            };
+        }
+        if (agentConfig.skills.mcp) {
+            const mcpServers = {};
+            for (const [id, mcp] of Object.entries(agentConfig.skills.mcp)) {
+                const mapped = { ...mcp };
+                if (mcp.oauth) {
+                    mapped.oauth = {
+                        authUrl: mcp.oauth.auth_url,
+                        tokenUrl: mcp.oauth.token_url,
+                        clientId: resolveEnvVar(mcp.oauth.client_id || "", dotenvVars),
+                        clientSecret: resolveEnvVar(mcp.oauth.client_secret || "", dotenvVars),
+                        scopes: mcp.oauth.scopes,
+                        tokenEndpointAuthMethod: mcp.oauth.token_endpoint_auth_method,
+                    };
+                }
+                // Resolve env vars in MCP env block
+                if (mcp.env) {
+                    mapped.env = Object.fromEntries(Object.entries(mcp.env).map(([k, v]) => [
+                        k,
+                        resolveEnvVar(v, dotenvVars),
+                    ]));
+                }
+                mcpServers[id] = mapped;
+            }
+            entry.settings.mcpServers = mcpServers;
+        }
+        // Resolve provider credentials from $ENV_VAR references
+        const credentials = agentConfig.providers
+            .filter((p) => p.key)
+            .map((p) => ({
+            providerId: p.id,
+            key: resolveEnvVar(p.key, dotenvVars),
+        }))
+            .filter((c) => c.key); // skip if env var not found
+        if (credentials.length > 0) {
+            entry.credentials = credentials;
+        }
+        // Resolve connection configs from $ENV_VAR references
+        const connections = agentConfig.connections
+            .map((conn) => ({
+            type: conn.type,
+            config: Object.fromEntries(Object.entries(conn.config).map(([k, v]) => [
+                k,
+                resolveEnvVar(v, dotenvVars),
+            ])),
+        }))
+            .filter((conn) => Object.values(conn.config).every((v) => v !== "")); // skip if any env var missing
+        if (connections.length > 0) {
+            entry.connections = connections;
+        }
+        entries.push(entry);
+    }
+    const envVars = {
+        COMPOSE_PROJECT_NAME: entries[0]?.name
+            ? entries[0].name.toLowerCase().replace(/\s+/g, "-")
+            : basename(cwd),
+    };
+    return { manifest: { version: 1, agents: entries }, envVars };
+}
+/**
+ * Resolve a value that may be a $ENV_VAR reference.
+ * Returns the resolved value, or empty string if the env var is not set.
+ */
+function resolveEnvVar(value, envVars) {
+    if (value.startsWith("$")) {
+        const varName = value.slice(1);
+        return envVars[varName] || process.env[varName] || "";
     }
+    return value;
 }
 function parseEnvFile(content) {
     const vars = {};
@@ -120,9 +263,45 @@ function parseEnvFile(content) {
         if (eqIdx === -1)
             continue;
         const key = trimmed.slice(0, eqIdx);
-        const value = trimmed.slice(eqIdx + 1);
+        let value = trimmed.slice(eqIdx + 1);
+        // Strip surrounding quotes (double or single)
+        if ((value.startsWith('"') && value.endsWith('"')) ||
+            (value.startsWith("'") && value.endsWith("'"))) {
+            value = value.slice(1, -1);
+        }
         vars[key] = value;
     }
     return vars;
 }
+/**
+ * Merge derived env vars into an existing .env file.
+ * Updates existing keys in-place and appends new ones at the end.
+ * Preserves comments, blank lines, and formatting.
+ */
+async function mergeEnvFile(envPath, existingContent, newVars) {
+    const remaining = { ...newVars };
+    const lines = existingContent.split("\n");
+    const updated = lines.map((line) => {
+        const trimmed = line.trim();
+        if (!trimmed || trimmed.startsWith("#"))
+            return line;
+        const eqIdx = trimmed.indexOf("=");
+        if (eqIdx === -1)
+            return line;
+        const key = trimmed.slice(0, eqIdx);
+        if (key in remaining) {
+            const val = remaining[key];
+            delete remaining[key];
+            return `${key}=${val}`;
+        }
+        return line;
+    });
+    // Append any new vars that weren't already in the file
+    for (const [key, value] of Object.entries(remaining)) {
+        updated.push(`${key}=${value}`);
+    }
+    // Ensure trailing newline
+    const content = `${updated.join("\n").trimEnd()}\n`;
+    await writeFile(envPath, content);
+}
 //# sourceMappingURL=dev.js.map