@loaders.gl/netcdf 3.4.0-alpha.2 → 3.4.0-alpha.4

package/dist/esm/netcdfjs/read-header.js

@@ -1,18 +1,13 @@
 import { readType, num2str } from './read-type';
-
 const ZERO = 0;
 const NC_DIMENSION = 10;
 const NC_VARIABLE = 11;
 const NC_ATTRIBUTE = 12;
 const NC_UNLIMITED = 0;
-
 export function readNetCDFHeader(buffer, version) {
   const recordDimensionLength = buffer.readUint32();
-
   const dimList = readDimensionsList(buffer);
-
   const attributes = readAttributesList(buffer);
-
   const variableList = readVariablesList(buffer, dimList.recordId, version);
   const header = {
     version,
@@ -28,7 +23,6 @@ export function readNetCDFHeader(buffer, version) {
   };
   return header;
 }
-
 function readDimensionsList(buffer) {
   const dimList = buffer.readUint32();
   if (dimList === ZERO) {
@@ -44,14 +38,12 @@ function readDimensionsList(buffer) {
   if (dimList !== NC_DIMENSION) {
     throw new Error('NetCDF: wrong tag for list of dimensions');
   }
-
   const dimensionSize = buffer.readUint32();
   const dimensions = new Array(dimensionSize);
   let recordId;
   let recordName;
   for (let dim = 0; dim < dimensionSize; dim++) {
     const name = readName(buffer);
-
     const size = buffer.readUint32();
     if (size === NC_UNLIMITED) {
       recordId = dim;
@@ -68,7 +60,6 @@ function readDimensionsList(buffer) {
     recordName
   };
 }
-
 function readAttributesList(buffer) {
   const gAttList = buffer.readUint32();
   if (gAttList === ZERO) {
@@ -80,20 +71,16 @@ function readAttributesList(buffer) {
   if (gAttList !== NC_ATTRIBUTE) {
     throw new Error('NetCDF: wrong tag for list of attributes');
   }
-
   const attributeSize = buffer.readUint32();
   const attributes = new Array(attributeSize);
   for (let gAtt = 0; gAtt < attributeSize; gAtt++) {
     const name = readName(buffer);
-
     const type = buffer.readUint32();
     if (type < 1 || type > 6) {
       throw new Error("NetCDF: non valid type ".concat(type));
     }
-
     const size = buffer.readUint32();
     const value = readType(buffer, type, size);
-
     padding(buffer);
     attributes[gAtt] = {
       name,
@@ -103,7 +90,6 @@ function readAttributesList(buffer) {
   }
   return attributes;
 }
-
 function readVariablesList(buffer, recordId, version) {
   const varList = buffer.readUint32();
   let recordStep = 0;
@@ -119,28 +105,21 @@ function readVariablesList(buffer, recordId, version) {
   if (varList !== NC_VARIABLE) {
     throw new Error('NetCDF: wrong tag for list of variables');
   }
-
   const variableSize = buffer.readUint32();
   const variables = new Array(variableSize);
   for (let v = 0; v < variableSize; v++) {
     const name = readName(buffer);
-
     const dimensionality = buffer.readUint32();
-
     const dimensionsIds = new Array(dimensionality);
     for (let dim = 0; dim < dimensionality; dim++) {
       dimensionsIds[dim] = buffer.readUint32();
     }
-
     const attributes = readAttributesList(buffer);
-
     const type = buffer.readUint32();
     if (type < 1 && type > 6) {
       throw new Error("NetCDF: non valid type ".concat(type));
     }
-
     const varSize = buffer.readUint32();
-
     let offset = buffer.readUint32();
     if (version === 2) {
       if (offset > 0) {
@@ -168,15 +147,12 @@ function readVariablesList(buffer, recordId, version) {
     recordStep
   };
 }
-
 export function readName(buffer) {
   const nameLength = buffer.readUint32();
   const name = buffer.readChars(nameLength);
-
   padding(buffer);
   return name;
 }
-
 function padding(buffer) {
   if (buffer.offset % 4 !== 0) {
     buffer.skip(4 - buffer.offset % 4);

package/dist/esm/netcdfjs/read-header.js.map

@@ -1 +1 @@
-{"version":3,"file":"read-header.js","names":["readType","num2str","ZERO","NC_DIMENSION","NC_VARIABLE","NC_ATTRIBUTE","NC_UNLIMITED","readNetCDFHeader","buffer","version","recordDimensionLength","readUint32","dimList","readDimensionsList","attributes","readAttributesList","variableList","readVariablesList","recordId","header","recordDimension","length","id","name","recordName","recordStep","dimensions","variables","Error","dimensionSize","Array","dim","readName","size","gAttList","attributeSize","gAtt","type","value","padding","varList","variableSize","v","dimensionality","dimensionsIds","varSize","offset","record","nameLength","readChars","skip"],"sources":["../../../src/netcdfjs/read-header.ts"],"sourcesContent":["import type {IOBuffer} from '../iobuffer/iobuffer';\nimport type {NetCDFHeader, NetCDFDimension, NetCDFVariable, NetCDFAttribute} from './netcdf-types';\nimport {readType, num2str} from './read-type';\n\n// Grammar constants\nconst ZERO = 0;\nconst NC_DIMENSION = 10;\nconst NC_VARIABLE = 11;\nconst NC_ATTRIBUTE = 12;\n\nconst NC_UNLIMITED = 0;\n\n/**\n * Read the header of the file\n * @param buffer - Buffer for the file data\n * @param version - Version of the file\n * @return  - Header\n */\nexport function readNetCDFHeader(buffer: IOBuffer, version: number): NetCDFHeader {\n  // Length of record dimension\n  // sum of the varSize's of all the record variables.\n  const recordDimensionLength = buffer.readUint32();\n\n  // List of dimensions\n  const dimList = readDimensionsList(buffer);\n\n  // List of global attributes\n  const attributes = readAttributesList(buffer);\n\n  // List of variables\n  const variableList = readVariablesList(buffer, dimList.recordId, version);\n\n  const header: NetCDFHeader = {\n    version,\n    recordDimension: {\n      length: recordDimensionLength,\n      id: dimList.recordId, // id of the unlimited dimension\n      name: dimList.recordName, // name of the unlimited dimension\n      recordStep: variableList.recordStep\n    },\n    dimensions: dimList.dimensions,\n    variables: variableList.variables,\n    attributes\n  };\n\n  return header;\n}\n\n/**\n * Read list of dimensions\n * @ignore\n * @param {IOBuffer} buffer - Buffer for the file data\n */\nfunction readDimensionsList(buffer: IOBuffer): {\n  recordId: number;\n  recordName: string;\n  dimensions: NetCDFDimension[];\n} {\n  const dimList = buffer.readUint32();\n  if (dimList === ZERO) {\n    if (buffer.readUint32() !== ZERO) {\n      throw new Error('NetCDF: wrong empty tag for list of dimensions');\n    }\n    // TODO - is this empty dimension list supported / recoverable?\n    return {\n      recordId: 0,\n      recordName: '',\n      dimensions: []\n    };\n  }\n\n  if (dimList !== NC_DIMENSION) {\n    throw new Error('NetCDF: wrong tag for list of dimensions');\n  }\n\n  // Length of dimensions\n  const dimensionSize = buffer.readUint32();\n  const dimensions = new Array(dimensionSize);\n  let recordId;\n  let recordName;\n  for (let dim = 0; dim < dimensionSize; dim++) {\n    // Read name\n    const name = readName(buffer);\n\n    // Read dimension size\n    const size = buffer.readUint32();\n    if (size === NC_UNLIMITED) {\n      // in netcdf 3 one field can be of size unlimmited\n      recordId = dim;\n      recordName = name;\n    }\n\n    dimensions[dim] = {\n      name,\n      size\n    };\n  }\n\n  return {\n    dimensions,\n    recordId,\n    recordName\n  };\n}\n\n/**\n * List of attributes\n * @ignore\n * @param buffer - Buffer for the file data\n * @return List of attributes with:\n */\nfunction readAttributesList(buffer: IOBuffer): NetCDFAttribute[] {\n  const gAttList = buffer.readUint32();\n  if (gAttList === ZERO) {\n    if (buffer.readUint32() !== ZERO) {\n      throw new Error('NetCDF: wrong empty tag for list of attributes');\n    }\n    return [];\n  }\n\n  if (gAttList !== NC_ATTRIBUTE) {\n    throw new Error('NetCDF: wrong tag for list of attributes');\n  }\n\n  // Length of attributes\n  const attributeSize = buffer.readUint32();\n  const attributes = new Array(attributeSize);\n  for (let gAtt = 0; gAtt < attributeSize; gAtt++) {\n    // Read name\n    const name = readName(buffer);\n\n    // Read type\n    const type = buffer.readUint32();\n    if (type < 1 || type > 6) {\n      throw new Error(`NetCDF: non valid type ${type}`);\n    }\n\n    // Read attribute\n    const size = buffer.readUint32();\n    const value = readType(buffer, type, size);\n\n    // Apply padding\n    padding(buffer);\n\n    attributes[gAtt] = {\n      name,\n      type: num2str(type),\n      value\n    };\n  }\n  return attributes;\n}\n\n/**\n * List of variables\n * @param buffer - Buffer for the file data\n * @param recordId - Id of the unlimited dimension (also called record dimension)\n *                            This value may be undefined if there is no unlimited dimension\n * @param {number} version - Version of the file\n */\n// eslint-disable-next-line max-statements, complexity\nfunction readVariablesList(\n  buffer: IOBuffer,\n  recordId: number,\n  version: number\n): {\n  recordStep: number;\n  variables: NetCDFVariable[];\n} {\n  const varList = buffer.readUint32();\n  let recordStep = 0;\n  if (varList === ZERO) {\n    if (buffer.readUint32() !== ZERO) {\n      throw new Error('NetCDF: wrong empty tag for list of variables');\n    }\n    return {\n      recordStep,\n      variables: []\n    };\n  }\n\n  if (varList !== NC_VARIABLE) {\n    throw new Error('NetCDF: wrong tag for list of variables');\n  }\n\n  // Length of variables\n  const variableSize = buffer.readUint32();\n  const variables = new Array(variableSize);\n  for (let v = 0; v < variableSize; v++) {\n    // Read name\n    const name = readName(buffer);\n\n    // Read dimensionality of the variable\n    const dimensionality = buffer.readUint32();\n\n    // Index into the list of dimensions\n    const dimensionsIds = new Array(dimensionality);\n    for (let dim = 0; dim < dimensionality; dim++) {\n      dimensionsIds[dim] = buffer.readUint32();\n    }\n\n    // Read variables size\n    const attributes = readAttributesList(buffer);\n\n    // Read type\n    const type = buffer.readUint32();\n    if (type < 1 && type > 6) {\n      throw new Error(`NetCDF: non valid type ${type}`);\n    }\n\n    // Read variable size\n    // The 32-bit varSize field is not large enough to contain the size of variables that require\n    // more than 2^32 - 4 bytes, so 2^32 - 1 is used in the varSize field for such variables.\n    const varSize = buffer.readUint32();\n\n    // Read offset\n    let offset = buffer.readUint32();\n    if (version === 2) {\n      if (offset > 0) {\n        throw new Error('NetCDF: offsets larger than 4GB not supported');\n      }\n      offset = buffer.readUint32();\n    }\n\n    let record = false;\n    // Count amount of record variables\n    if (typeof recordId !== 'undefined' && dimensionsIds[0] === recordId) {\n      recordStep += varSize;\n      record = true;\n    }\n    variables[v] = {\n      name,\n      dimensions: dimensionsIds,\n      attributes,\n      type: num2str(type),\n      size: varSize,\n      offset,\n      record\n    };\n  }\n\n  return {\n    variables,\n    recordStep\n  };\n}\n\n// HELPERS\n\n/**\n * Reads the name\n * @param buffer - Buffer for the file data\n * @return Name\n */\nexport function readName(buffer: IOBuffer): string {\n  // Read name\n  const nameLength = buffer.readUint32();\n  const name = buffer.readChars(nameLength);\n\n  // validate name\n  // TODO\n\n  // Apply padding\n  padding(buffer);\n  return name;\n}\n\n/**\n * Moves 1, 2, or 3 bytes to next 4-byte boundary\n */\nfunction padding(buffer: IOBuffer) {\n  if (buffer.offset % 4 !== 0) {\n    buffer.skip(4 - 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Buffer for the file data\n * @param version - Version of the file\n * @return  - Header\n */\nexport function readNetCDFHeader(buffer: IOBuffer, version: number): NetCDFHeader {\n  // Length of record dimension\n  // sum of the varSize's of all the record variables.\n  const recordDimensionLength = buffer.readUint32();\n\n  // List of dimensions\n  const dimList = readDimensionsList(buffer);\n\n  // List of global attributes\n  const attributes = readAttributesList(buffer);\n\n  // List of variables\n  const variableList = readVariablesList(buffer, dimList.recordId, version);\n\n  const header: NetCDFHeader = {\n    version,\n    recordDimension: {\n      length: recordDimensionLength,\n      id: dimList.recordId, // id of the unlimited dimension\n      name: dimList.recordName, // name of the unlimited dimension\n      recordStep: variableList.recordStep\n    },\n    dimensions: dimList.dimensions,\n    variables: variableList.variables,\n    attributes\n  };\n\n  return header;\n}\n\n/**\n * Read list of dimensions\n * @ignore\n * @param {IOBuffer} buffer - Buffer for the file data\n */\nfunction readDimensionsList(buffer: IOBuffer): {\n  recordId: number;\n  recordName: string;\n  dimensions: NetCDFDimension[];\n} {\n  const dimList = buffer.readUint32();\n  if (dimList === ZERO) {\n    if (buffer.readUint32() !== ZERO) {\n      throw new Error('NetCDF: wrong empty tag for list of dimensions');\n    }\n    // TODO - is this empty dimension list supported / recoverable?\n    return {\n      recordId: 0,\n      recordName: '',\n      dimensions: []\n    };\n  }\n\n  if (dimList !== NC_DIMENSION) {\n    throw new Error('NetCDF: wrong tag for list of dimensions');\n  }\n\n  // Length of dimensions\n  const dimensionSize = buffer.readUint32();\n  const dimensions = new Array(dimensionSize);\n  let recordId;\n  let recordName;\n  for (let dim = 0; dim < dimensionSize; dim++) {\n    // Read name\n    const name = readName(buffer);\n\n    // Read dimension size\n    const size = buffer.readUint32();\n    if (size === NC_UNLIMITED) {\n      // in netcdf 3 one field can be of size unlimmited\n      recordId = dim;\n      recordName = name;\n    }\n\n    dimensions[dim] = {\n      name,\n      size\n    };\n  }\n\n  return {\n    dimensions,\n    recordId,\n    recordName\n  };\n}\n\n/**\n * List of attributes\n * @ignore\n * @param buffer - Buffer for the file data\n * @return List of attributes with:\n */\nfunction readAttributesList(buffer: IOBuffer): NetCDFAttribute[] {\n  const gAttList = buffer.readUint32();\n  if (gAttList === ZERO) {\n    if (buffer.readUint32() !== ZERO) {\n      throw new Error('NetCDF: wrong empty tag for list of attributes');\n    }\n    return [];\n  }\n\n  if (gAttList !== NC_ATTRIBUTE) {\n    throw new Error('NetCDF: wrong tag for list of attributes');\n  }\n\n  // Length of attributes\n  const attributeSize = buffer.readUint32();\n  const attributes = new Array(attributeSize);\n  for (let gAtt = 0; gAtt < attributeSize; gAtt++) {\n    // Read name\n    const name = readName(buffer);\n\n    // Read type\n    const type = buffer.readUint32();\n    if (type < 1 || type > 6) {\n      throw new Error(`NetCDF: non valid type ${type}`);\n    }\n\n    // Read attribute\n    const size = buffer.readUint32();\n    const value = readType(buffer, type, size);\n\n    // Apply padding\n    padding(buffer);\n\n    attributes[gAtt] = {\n      name,\n      type: num2str(type),\n      value\n    };\n  }\n  return attributes;\n}\n\n/**\n * List of variables\n * @param buffer - Buffer for the file data\n * @param recordId - Id of the unlimited dimension (also called record dimension)\n *                            This value may be undefined if there is no unlimited dimension\n * @param {number} version - Version of the file\n */\n// eslint-disable-next-line max-statements, complexity\nfunction readVariablesList(\n  buffer: IOBuffer,\n  recordId: number,\n  version: number\n): {\n  recordStep: number;\n  variables: NetCDFVariable[];\n} {\n  const varList = buffer.readUint32();\n  let recordStep = 0;\n  if (varList === ZERO) {\n    if (buffer.readUint32() !== ZERO) {\n      throw new Error('NetCDF: wrong empty tag for list of variables');\n    }\n    return {\n      recordStep,\n      variables: []\n    };\n  }\n\n  if (varList !== NC_VARIABLE) {\n    throw new Error('NetCDF: wrong tag for list of variables');\n  }\n\n  // Length of variables\n  const variableSize = buffer.readUint32();\n  const variables = new Array(variableSize);\n  for (let v = 0; v < variableSize; v++) {\n    // Read name\n    const name = readName(buffer);\n\n    // Read dimensionality of the variable\n    const dimensionality = buffer.readUint32();\n\n    // Index into the list of dimensions\n    const dimensionsIds = new Array(dimensionality);\n    for (let dim = 0; dim < dimensionality; dim++) {\n      dimensionsIds[dim] = buffer.readUint32();\n    }\n\n    // Read variables size\n    const attributes = readAttributesList(buffer);\n\n    // Read type\n    const type = buffer.readUint32();\n    if (type < 1 && type > 6) {\n      throw new Error(`NetCDF: non valid type ${type}`);\n    }\n\n    // Read variable size\n    // The 32-bit varSize field is not large enough to contain the size of variables that require\n    // more than 2^32 - 4 bytes, so 2^32 - 1 is used in the varSize field for such variables.\n    const varSize = buffer.readUint32();\n\n    // Read offset\n    let offset = buffer.readUint32();\n    if (version === 2) {\n      if (offset > 0) {\n        throw new Error('NetCDF: offsets larger than 4GB not supported');\n      }\n      offset = buffer.readUint32();\n    }\n\n    let record = false;\n    // Count amount of record variables\n    if (typeof recordId !== 'undefined' && dimensionsIds[0] === recordId) {\n      recordStep += varSize;\n      record = true;\n    }\n    variables[v] = {\n      name,\n      dimensions: dimensionsIds,\n      attributes,\n      type: num2str(type),\n      size: varSize,\n      offset,\n      record\n    };\n  }\n\n  return {\n    variables,\n    recordStep\n  };\n}\n\n// HELPERS\n\n/**\n * Reads the name\n * @param buffer - Buffer for the file data\n * @return Name\n */\nexport function readName(buffer: IOBuffer): string {\n  // Read name\n  const nameLength = buffer.readUint32();\n  const name = buffer.readChars(nameLength);\n\n  // validate name\n  // TODO\n\n  // Apply padding\n  padding(buffer);\n  return name;\n}\n\n/**\n * Moves 1, 2, or 3 bytes to next 4-byte boundary\n */\nfunction padding(buffer: IOBuffer) {\n  if (buffer.offset % 4 !== 0) {\n    buffer.skip(4 - 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package/dist/esm/netcdfjs/read-type.js

@@ -6,7 +6,6 @@ export const TYPES = {
   FLOAT: 5,
   DOUBLE: 6
 };
-
 export function readType(buffer, type, size) {
   switch (type) {
     case TYPES.BYTE:
@@ -25,7 +24,6 @@ export function readType(buffer, type, size) {
       throw new Error("NetCDF: non valid type ".concat(type));
   }
 }
-
 export function num2str(type) {
   switch (Number(type)) {
     case TYPES.BYTE:
@@ -44,7 +42,6 @@ export function num2str(type) {
       return 'undefined';
   }
 }
-
 export function num2bytes(type) {
   switch (Number(type)) {
     case TYPES.BYTE:
@@ -63,7 +60,6 @@ export function num2bytes(type) {
       return -1;
   }
 }
-
 export function str2num(type) {
   switch (String(type)) {
     case 'byte':
@@ -82,7 +78,6 @@ export function str2num(type) {
       return -1;
   }
 }
-
 function readNumber(size, bufferReader) {
   if (size !== 1) {
     const numbers = new Array(size);
@@ -93,7 +88,6 @@ function readNumber(size, bufferReader) {
   }
   return bufferReader();
 }
-
 function trimNull(value) {
   if (value.charCodeAt(value.length - 1) === 0) {
     return value.substring(0, value.length - 1);

package/dist/esm/netcdfjs/read-type.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@loaders.gl/netcdf",
   "description": "Loader for NetCDF",
-  "version": "3.4.0-alpha.2",
+  "version": "3.4.0-alpha.4",
   "license": "MIT",
   "publishConfig": {
     "access": "public"
@@ -30,7 +30,7 @@
     "build-bundle": "esbuild src/bundle.ts --bundle --outfile=dist/dist.min.js"
   },
   "dependencies": {
-    "@loaders.gl/loader-utils": "3.4.0-alpha.2"
+    "@loaders.gl/loader-utils": "3.4.0-alpha.4"
   },
-  "gitHead": "f1c00c124d8d0c41a138ff40afb0d1a00711bf2e"
+  "gitHead": "f039a523df8b908a91f26c5ba8c4cfc1924b6140"
 }