@loaders.gl/netcdf 3.1.3 → 4.0.0-alpha.5

package/dist/netcdfjs/read-header.js

@@ -1,230 +1,197 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.readName = exports.readNetCDFHeader = void 0;
-const read_type_1 = require("./read-type");
-// Grammar constants
+import { readType, num2str } from './read-type';
 const ZERO = 0;
 const NC_DIMENSION = 10;
 const NC_VARIABLE = 11;
 const NC_ATTRIBUTE = 12;
 const NC_UNLIMITED = 0;
-/**
- * Read the header of the file
- * @param buffer - Buffer for the file data
- * @param version - Version of the file
- * @return  - Header
- */
-function readNetCDFHeader(buffer, version) {
-    // Length of record dimension
-    // sum of the varSize's of all the record variables.
-    const recordDimensionLength = buffer.readUint32();
-    // List of dimensions
-    const dimList = readDimensionsList(buffer);
-    // List of global attributes
-    const attributes = readAttributesList(buffer);
-    // List of variables
-    const variableList = readVariablesList(buffer, dimList.recordId, version);
-    const header = {
-        version,
-        recordDimension: {
-            length: recordDimensionLength,
-            id: dimList.recordId,
-            name: dimList.recordName,
-            recordStep: variableList.recordStep
-        },
-        dimensions: dimList.dimensions,
-        variables: variableList.variables,
-        attributes
-    };
-    return header;
+export function readNetCDFHeader(buffer, version) {
+  const recordDimensionLength = buffer.readUint32();
+  const dimList = readDimensionsList(buffer);
+  const attributes = readAttributesList(buffer);
+  const variableList = readVariablesList(buffer, dimList.recordId, version);
+  const header = {
+    version,
+    recordDimension: {
+      length: recordDimensionLength,
+      id: dimList.recordId,
+      name: dimList.recordName,
+      recordStep: variableList.recordStep
+    },
+    dimensions: dimList.dimensions,
+    variables: variableList.variables,
+    attributes
+  };
+  return header;
 }
-exports.readNetCDFHeader = readNetCDFHeader;
-/**
- * Read list of dimensions
- * @ignore
- * @param {IOBuffer} buffer - Buffer for the file data
- */
+
 function readDimensionsList(buffer) {
-    const dimList = buffer.readUint32();
-    if (dimList === ZERO) {
-        if (buffer.readUint32() !== ZERO) {
-            throw new Error('NetCDF: wrong empty tag for list of dimensions');
-        }
-        // TODO - is this empty dimension list supported / recoverable?
-        return {
-            recordId: 0,
-            recordName: '',
-            dimensions: []
-        };
-    }
-    if (dimList !== NC_DIMENSION) {
-        throw new Error('NetCDF: wrong tag for list of dimensions');
-    }
-    // Length of dimensions
-    const dimensionSize = buffer.readUint32();
-    const dimensions = new Array(dimensionSize);
-    let recordId;
-    let recordName;
-    for (let dim = 0; dim < dimensionSize; dim++) {
-        // Read name
-        const name = readName(buffer);
-        // Read dimension size
-        const size = buffer.readUint32();
-        if (size === NC_UNLIMITED) {
-            // in netcdf 3 one field can be of size unlimmited
-            recordId = dim;
-            recordName = name;
-        }
-        dimensions[dim] = {
-            name,
-            size
-        };
+  const dimList = buffer.readUint32();
+
+  if (dimList === ZERO) {
+    if (buffer.readUint32() !== ZERO) {
+      throw new Error('NetCDF: wrong empty tag for list of dimensions');
     }
+
     return {
-        dimensions,
-        recordId,
-        recordName
+      recordId: 0,
+      recordName: '',
+      dimensions: []
     };
+  }
+
+  if (dimList !== NC_DIMENSION) {
+    throw new Error('NetCDF: wrong tag for list of dimensions');
+  }
+
+  const dimensionSize = buffer.readUint32();
+  const dimensions = new Array(dimensionSize);
+  let recordId;
+  let recordName;
+
+  for (let dim = 0; dim < dimensionSize; dim++) {
+    const name = readName(buffer);
+    const size = buffer.readUint32();
+
+    if (size === NC_UNLIMITED) {
+      recordId = dim;
+      recordName = name;
+    }
+
+    dimensions[dim] = {
+      name,
+      size
+    };
+  }
+
+  return {
+    dimensions,
+    recordId,
+    recordName
+  };
 }
-/**
- * List of attributes
- * @ignore
- * @param buffer - Buffer for the file data
- * @return List of attributes with:
- */
+
 function readAttributesList(buffer) {
-    const gAttList = buffer.readUint32();
-    if (gAttList === ZERO) {
-        if (buffer.readUint32() !== ZERO) {
-            throw new Error('NetCDF: wrong empty tag for list of attributes');
-        }
-        return [];
-    }
-    if (gAttList !== NC_ATTRIBUTE) {
-        throw new Error('NetCDF: wrong tag for list of attributes');
+  const gAttList = buffer.readUint32();
+
+  if (gAttList === ZERO) {
+    if (buffer.readUint32() !== ZERO) {
+      throw new Error('NetCDF: wrong empty tag for list of attributes');
     }
-    // Length of attributes
-    const attributeSize = buffer.readUint32();
-    const attributes = new Array(attributeSize);
-    for (let gAtt = 0; gAtt < attributeSize; gAtt++) {
-        // Read name
-        const name = readName(buffer);
-        // Read type
-        const type = buffer.readUint32();
-        if (type < 1 || type > 6) {
-            throw new Error(`NetCDF: non valid type ${type}`);
-        }
-        // Read attribute
-        const size = buffer.readUint32();
-        const value = (0, read_type_1.readType)(buffer, type, size);
-        // Apply padding
-        padding(buffer);
-        attributes[gAtt] = {
-            name,
-            type: (0, read_type_1.num2str)(type),
-            value
-        };
+
+    return [];
+  }
+
+  if (gAttList !== NC_ATTRIBUTE) {
+    throw new Error('NetCDF: wrong tag for list of attributes');
+  }
+
+  const attributeSize = buffer.readUint32();
+  const attributes = new Array(attributeSize);
+
+  for (let gAtt = 0; gAtt < attributeSize; gAtt++) {
+    const name = readName(buffer);
+    const type = buffer.readUint32();
+
+    if (type < 1 || type > 6) {
+      throw new Error("NetCDF: non valid type ".concat(type));
     }
-    return attributes;
+
+    const size = buffer.readUint32();
+    const value = readType(buffer, type, size);
+    padding(buffer);
+    attributes[gAtt] = {
+      name,
+      type: num2str(type),
+      value
+    };
+  }
+
+  return attributes;
 }
-/**
- * List of variables
- * @param buffer - Buffer for the file data
- * @param recordId - Id of the unlimited dimension (also called record dimension)
- *                            This value may be undefined if there is no unlimited dimension
- * @param {number} version - Version of the file
- */
-// eslint-disable-next-line max-statements, complexity
+
 function readVariablesList(buffer, recordId, version) {
-    const varList = buffer.readUint32();
-    let recordStep = 0;
-    if (varList === ZERO) {
-        if (buffer.readUint32() !== ZERO) {
-            throw new Error('NetCDF: wrong empty tag for list of variables');
-        }
-        return {
-            recordStep,
-            variables: []
-        };
+  const varList = buffer.readUint32();
+  let recordStep = 0;
+
+  if (varList === ZERO) {
+    if (buffer.readUint32() !== ZERO) {
+      throw new Error('NetCDF: wrong empty tag for list of variables');
     }
-    if (varList !== NC_VARIABLE) {
-        throw new Error('NetCDF: wrong tag for list of variables');
+
+    return {
+      recordStep,
+      variables: []
+    };
+  }
+
+  if (varList !== NC_VARIABLE) {
+    throw new Error('NetCDF: wrong tag for list of variables');
+  }
+
+  const variableSize = buffer.readUint32();
+  const variables = new Array(variableSize);
+
+  for (let v = 0; v < variableSize; v++) {
+    const name = readName(buffer);
+    const dimensionality = buffer.readUint32();
+    const dimensionsIds = new Array(dimensionality);
+
+    for (let dim = 0; dim < dimensionality; dim++) {
+      dimensionsIds[dim] = buffer.readUint32();
     }
-    // Length of variables
-    const variableSize = buffer.readUint32();
-    const variables = new Array(variableSize);
-    for (let v = 0; v < variableSize; v++) {
-        // Read name
-        const name = readName(buffer);
-        // Read dimensionality of the variable
-        const dimensionality = buffer.readUint32();
-        // Index into the list of dimensions
-        const dimensionsIds = new Array(dimensionality);
-        for (let dim = 0; dim < dimensionality; dim++) {
-            dimensionsIds[dim] = buffer.readUint32();
-        }
-        // Read variables size
-        const attributes = readAttributesList(buffer);
-        // Read type
-        const type = buffer.readUint32();
-        if (type < 1 && type > 6) {
-            throw new Error(`NetCDF: non valid type ${type}`);
-        }
-        // Read variable size
-        // The 32-bit varSize field is not large enough to contain the size of variables that require
-        // more than 2^32 - 4 bytes, so 2^32 - 1 is used in the varSize field for such variables.
-        const varSize = buffer.readUint32();
-        // Read offset
-        let offset = buffer.readUint32();
-        if (version === 2) {
-            if (offset > 0) {
-                throw new Error('NetCDF: offsets larger than 4GB not supported');
-            }
-            offset = buffer.readUint32();
-        }
-        let record = false;
-        // Count amount of record variables
-        if (typeof recordId !== 'undefined' && dimensionsIds[0] === recordId) {
-            recordStep += varSize;
-            record = true;
-        }
-        variables[v] = {
-            name,
-            dimensions: dimensionsIds,
-            attributes,
-            type: (0, read_type_1.num2str)(type),
-            size: varSize,
-            offset,
-            record
-        };
+
+    const attributes = readAttributesList(buffer);
+    const type = buffer.readUint32();
+
+    if (type < 1 && type > 6) {
+      throw new Error("NetCDF: non valid type ".concat(type));
     }
-    return {
-        variables,
-        recordStep
+
+    const varSize = buffer.readUint32();
+    let offset = buffer.readUint32();
+
+    if (version === 2) {
+      if (offset > 0) {
+        throw new Error('NetCDF: offsets larger than 4GB not supported');
+      }
+
+      offset = buffer.readUint32();
+    }
+
+    let record = false;
+
+    if (typeof recordId !== 'undefined' && dimensionsIds[0] === recordId) {
+      recordStep += varSize;
+      record = true;
+    }
+
+    variables[v] = {
+      name,
+      dimensions: dimensionsIds,
+      attributes,
+      type: num2str(type),
+      size: varSize,
+      offset,
+      record
     };
+  }
+
+  return {
+    variables,
+    recordStep
+  };
 }
-// HELPERS
-/**
- * Reads the name
- * @param buffer - Buffer for the file data
- * @return Name
- */
-function readName(buffer) {
-    // Read name
-    const nameLength = buffer.readUint32();
-    const name = buffer.readChars(nameLength);
-    // validate name
-    // TODO
-    // Apply padding
-    padding(buffer);
-    return name;
+
+export function readName(buffer) {
+  const nameLength = buffer.readUint32();
+  const name = buffer.readChars(nameLength);
+  padding(buffer);
+  return name;
 }
-exports.readName = readName;
-/**
- * Moves 1, 2, or 3 bytes to next 4-byte boundary
- */
+
 function padding(buffer) {
-    if (buffer.offset % 4 !== 0) {
-        buffer.skip(4 - (buffer.offset % 4));
-    }
+  if (buffer.offset % 4 !== 0) {
+    buffer.skip(4 - buffer.offset % 4);
+  }
 }
+//# sourceMappingURL=read-header.js.map

package/dist/netcdfjs/read-header.js.map

@@ -0,0 +1 @@
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type {IOBuffer} from '../iobuffer/iobuffer';\nimport type {NetCDFHeader, NetCDFDimension, NetCDFVariable, NetCDFAttribute} from './netcdf-types';\nimport {readType, num2str} from './read-type';\n\n// Grammar constants\nconst ZERO = 0;\nconst NC_DIMENSION = 10;\nconst NC_VARIABLE = 11;\nconst NC_ATTRIBUTE = 12;\n\nconst NC_UNLIMITED = 0;\n\n/**\n * Read the header of the file\n * @param buffer - Buffer for the file data\n * @param version - Version of the file\n * @return  - Header\n */\nexport function readNetCDFHeader(buffer: IOBuffer, version: number): NetCDFHeader {\n  // Length of record dimension\n  // sum of the varSize's of all the record variables.\n  const recordDimensionLength = buffer.readUint32();\n\n  // List of dimensions\n  const dimList = readDimensionsList(buffer);\n\n  // List of global attributes\n  const attributes = readAttributesList(buffer);\n\n  // List of variables\n  const variableList = readVariablesList(buffer, dimList.recordId, version);\n\n  const header: NetCDFHeader = {\n    version,\n    recordDimension: {\n      length: recordDimensionLength,\n      id: dimList.recordId, // id of the unlimited dimension\n      name: dimList.recordName, // name of the unlimited dimension\n      recordStep: variableList.recordStep\n    },\n    dimensions: dimList.dimensions,\n    variables: variableList.variables,\n    attributes\n  };\n\n  return header;\n}\n\n/**\n * Read list of dimensions\n * @ignore\n * @param {IOBuffer} buffer - Buffer for the file data\n */\nfunction readDimensionsList(buffer: IOBuffer): {\n  recordId: number;\n  recordName: string;\n  dimensions: NetCDFDimension[];\n} {\n  const dimList = buffer.readUint32();\n  if (dimList === ZERO) {\n    if (buffer.readUint32() !== ZERO) {\n      throw new Error('NetCDF: wrong empty tag for list of dimensions');\n    }\n    // TODO - is this empty dimension list supported / recoverable?\n    return {\n      recordId: 0,\n      recordName: '',\n      dimensions: []\n    };\n  }\n\n  if (dimList !== NC_DIMENSION) {\n    throw new Error('NetCDF: wrong tag for list of dimensions');\n  }\n\n  // Length of dimensions\n  const dimensionSize = buffer.readUint32();\n  const dimensions = new Array(dimensionSize);\n  let recordId;\n  let recordName;\n  for (let dim = 0; dim < dimensionSize; dim++) {\n    // Read name\n    const name = readName(buffer);\n\n    // Read dimension size\n    const size = buffer.readUint32();\n    if (size === NC_UNLIMITED) {\n      // in netcdf 3 one field can be of size unlimmited\n      recordId = dim;\n      recordName = name;\n    }\n\n    dimensions[dim] = {\n      name,\n      size\n    };\n  }\n\n  return {\n    dimensions,\n    recordId,\n    recordName\n  };\n}\n\n/**\n * List of attributes\n * @ignore\n * @param buffer - Buffer for the file data\n * @return List of attributes with:\n */\nfunction readAttributesList(buffer: IOBuffer): NetCDFAttribute[] {\n  const gAttList = buffer.readUint32();\n  if (gAttList === ZERO) {\n    if (buffer.readUint32() !== ZERO) {\n      throw new Error('NetCDF: wrong empty tag for list of attributes');\n    }\n    return [];\n  }\n\n  if (gAttList !== NC_ATTRIBUTE) {\n    throw new Error('NetCDF: wrong tag for list of attributes');\n  }\n\n  // Length of attributes\n  const attributeSize = buffer.readUint32();\n  const attributes = new Array(attributeSize);\n  for (let gAtt = 0; gAtt < attributeSize; gAtt++) {\n    // Read name\n    const name = readName(buffer);\n\n    // Read type\n    const type = buffer.readUint32();\n    if (type < 1 || type > 6) {\n      throw new Error(`NetCDF: non valid type ${type}`);\n    }\n\n    // Read attribute\n    const size = buffer.readUint32();\n    const value = readType(buffer, type, size);\n\n    // Apply padding\n    padding(buffer);\n\n    attributes[gAtt] = {\n      name,\n      type: num2str(type),\n      value\n    };\n  }\n  return attributes;\n}\n\n/**\n * List of variables\n * @param buffer - Buffer for the file data\n * @param recordId - Id of the unlimited dimension (also called record dimension)\n *                            This value may be undefined if there is no unlimited dimension\n * @param {number} version - Version of the file\n */\n// eslint-disable-next-line max-statements, complexity\nfunction readVariablesList(\n  buffer: IOBuffer,\n  recordId: number,\n  version: number\n): {\n  recordStep: number;\n  variables: NetCDFVariable[];\n} {\n  const varList = buffer.readUint32();\n  let recordStep = 0;\n  if (varList === ZERO) {\n    if (buffer.readUint32() !== ZERO) {\n      throw new Error('NetCDF: wrong empty tag for list of variables');\n    }\n    return {\n      recordStep,\n      variables: []\n    };\n  }\n\n  if (varList !== NC_VARIABLE) {\n    throw new Error('NetCDF: wrong tag for list of variables');\n  }\n\n  // Length of variables\n  const variableSize = buffer.readUint32();\n  const variables = new Array(variableSize);\n  for (let v = 0; v < variableSize; v++) {\n    // Read name\n    const name = readName(buffer);\n\n    // Read dimensionality of the variable\n    const dimensionality = buffer.readUint32();\n\n    // Index into the list of dimensions\n    const dimensionsIds = new Array(dimensionality);\n    for (let dim = 0; dim < dimensionality; dim++) {\n      dimensionsIds[dim] = buffer.readUint32();\n    }\n\n    // Read variables size\n    const attributes = readAttributesList(buffer);\n\n    // Read type\n    const type = buffer.readUint32();\n    if (type < 1 && type > 6) {\n      throw new Error(`NetCDF: non valid type ${type}`);\n    }\n\n    // Read variable size\n    // The 32-bit varSize field is not large enough to contain the size of variables that require\n    // more than 2^32 - 4 bytes, so 2^32 - 1 is used in the varSize field for such variables.\n    const varSize = buffer.readUint32();\n\n    // Read offset\n    let offset = buffer.readUint32();\n    if (version === 2) {\n      if (offset > 0) {\n        throw new Error('NetCDF: offsets larger than 4GB not supported');\n      }\n      offset = buffer.readUint32();\n    }\n\n    let record = false;\n    // Count amount of record variables\n    if (typeof recordId !== 'undefined' && dimensionsIds[0] === recordId) {\n      recordStep += varSize;\n      record = true;\n    }\n    variables[v] = {\n      name,\n      dimensions: dimensionsIds,\n      attributes,\n      type: num2str(type),\n      size: varSize,\n      offset,\n      record\n    };\n  }\n\n  return {\n    variables,\n    recordStep\n  };\n}\n\n// HELPERS\n\n/**\n * Reads the name\n * @param buffer - Buffer for the file data\n * @return Name\n */\nexport function readName(buffer: IOBuffer): string {\n  // Read name\n  const nameLength = buffer.readUint32();\n  const name = buffer.readChars(nameLength);\n\n  // validate name\n  // TODO\n\n  // Apply padding\n  padding(buffer);\n  return name;\n}\n\n/**\n * Moves 1, 2, or 3 bytes to next 4-byte boundary\n */\nfunction padding(buffer: IOBuffer) {\n  if (buffer.offset % 4 !== 0) {\n    buffer.skip(4 - (buffer.offset % 4));\n  }\n}\n"],"file":"read-header.js"}