@loaders.gl/graphs 4.5.3 → 5.0.0-alpha.11

package/dist/lib/parse-dot.js.map

@@ -1 +1 @@
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package/dist/lib/parse-gexf.d.ts

@@ -0,0 +1,5 @@
+import type { GraphShape } from "../graph-types.js";
+import type { GEXFOutput } from "../gexf-types.js";
+/** Parses a static GEXF document directly into the selected graph representation. */
+export declare function parseGEXF(input: string | ArrayBuffer | Uint8Array, shape?: GraphShape): GEXFOutput;
+//# sourceMappingURL=parse-gexf.d.ts.map

package/dist/lib/parse-gexf.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"parse-gexf.d.ts","sourceRoot":"","sources":["../../src/lib/parse-gexf.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAuB,UAAU,EAAqB,0BAAuB;AACzF,OAAO,KAAK,EAAC,UAAU,EAAC,yBAAsB;AAiC9C,qFAAqF;AACrF,wBAAgB,SAAS,CACvB,KAAK,EAAE,MAAM,GAAG,WAAW,GAAG,UAAU,EACxC,KAAK,GAAE,UAA0B,GAChC,UAAU,CAuGZ"}

package/dist/lib/parse-gexf.js

@@ -0,0 +1,380 @@
+// loaders.gl
+// SPDX-License-Identifier: MIT
+// Copyright (c) vis.gl contributors
+import { XMLParser, XMLValidator } from 'fast-xml-parser';
+import { buildGraphTables } from "./build-graph-tables.js";
+const parser = new XMLParser({
+    ignoreAttributes: false,
+    parseAttributeValue: false,
+    parseTagValue: false,
+    trimValues: false
+});
+const GEXF_NAMESPACE = /^https?:\/\/(?:www\.)?gexf.net\/1\.(?:2(?:draft)?|3)(\/viz)?$/;
+const TEMPORAL_ATTRIBUTES = [
+    'start',
+    'end',
+    'startopen',
+    'endopen',
+    'timestamp',
+    'timestamps',
+    'intervals'
+];
+/** Parses a static GEXF document directly into the selected graph representation. */
+export function parseGEXF(input, shape = 'arrow-table') {
+    const text = typeof input === 'string' ? input : new TextDecoder().decode(input);
+    const validation = XMLValidator.validate(text);
+    if (validation !== true)
+        throw new Error(`Invalid GEXF XML: ${validation.err.msg}`);
+    // External and custom entity declarations are outside the supported format subset.
+    if (/<!DOCTYPE\s/i.test(text))
+        throw new Error('GEXF document types are unsupported.');
+    const document = normalizeNamespaces(parser.parse(text), {});
+    const root = getElement(document.gexf, 'gexf');
+    const version = root['@_version'];
+    if (version && !['1.2', '1.2draft', '1.3'].includes(version)) {
+        throw new Error(`Unsupported GEXF version: ${version}`);
+    }
+    const graph = getElement(root.graph, 'graph');
+    const directed = parseDirection(graph['@_defaultedgetype'] ?? 'undirected');
+    const definitions = {
+        nodes: new Map(),
+        edges: new Map()
+    };
+    for (const attributes of getElements(graph.attributes)) {
+        const domain = attributes['@_class'];
+        if (domain !== 'node' && domain !== 'edge')
+            throw new Error('GEXF attributes require a node or edge class.');
+        const scoped = domain === 'node' ? definitions.nodes : definitions.edges;
+        const names = new Set(Array.from(scoped.values(), definition => definition.name));
+        for (const attribute of getElements(attributes.attribute)) {
+            const identifier = requireAttribute(attribute, 'id');
+            const name = requireAttribute(attribute, 'title');
+            if (name === 'gexf' || names.has(name) || scoped.has(identifier)) {
+                throw new Error(`Duplicate or reserved GEXF attribute: ${name}`);
+            }
+            names.add(name);
+            const type = parseAttributeType(requireAttribute(attribute, 'type'));
+            scoped.set(identifier, {
+                name,
+                type,
+                defaultValue: attribute.default === undefined
+                    ? undefined
+                    : castValue(readTextContent(attribute.default), type)
+            });
+        }
+    }
+    const nodeElements = getElements(getContainer(graph.nodes).node);
+    const edgeElements = getElements(getContainer(graph.edges).edge);
+    const nodeIdentifiers = new Set();
+    for (const node of nodeElements) {
+        const identifier = requireAttribute(node, 'id');
+        if (nodeIdentifiers.has(identifier))
+            throw new Error(`Duplicate GEXF node ID: ${identifier}`);
+        nodeIdentifiers.add(identifier);
+    }
+    const edgeIdentifiers = new Set(edgeElements
+        .map(edge => edge['@_id'])
+        .filter((identifier) => typeof identifier === 'string'));
+    const seenEdges = new Set();
+    /** Emits node records directly to the table builder. */
+    function* iterateNodes() {
+        for (const node of nodeElements)
+            yield parseRecord(node, definitions.nodes);
+    }
+    /** Emits edge records without materializing a plain graph. */
+    function* iterateEdges() {
+        for (const [index, edge] of edgeElements.entries()) {
+            const sourceId = requireAttribute(edge, 'source');
+            const targetId = requireAttribute(edge, 'target');
+            if (!nodeIdentifiers.has(sourceId) || !nodeIdentifiers.has(targetId)) {
+                throw new Error('GEXF edge references an undeclared node.');
+            }
+            let identifier = edge['@_id'] === undefined ? undefined : requireAttribute(edge, 'id');
+            if (identifier === undefined) {
+                identifier = `edge-${index}`;
+                while (edgeIdentifiers.has(identifier))
+                    identifier = `_${identifier}`;
+                edgeIdentifiers.add(identifier);
+            }
+            if (seenEdges.has(identifier))
+                throw new Error(`Duplicate GEXF edge ID: ${identifier}`);
+            seenEdges.add(identifier);
+            yield {
+                ...parseRecord(edge, definitions.edges, identifier),
+                sourceId,
+                targetId,
+                directed: edge['@_type'] === undefined ? directed : parseDirection(edge['@_type'])
+            };
+        }
+    }
+    const metadataAttributes = Object.create(null);
+    const meta = getContainer(root.meta);
+    for (const name of ['creator', 'description', 'keywords']) {
+        if (meta[name] !== undefined)
+            metadataAttributes[name] = readTextContent(meta[name]);
+    }
+    if (typeof meta['@_lastmodifieddate'] === 'string')
+        metadataAttributes.lastmodifieddate = meta['@_lastmodifieddate'];
+    const declarations = {
+        nodes: new Map(Array.from(definitions.nodes.values(), definition => [definition.name, definition.type])),
+        edges: new Map(Array.from(definitions.edges.values(), definition => [definition.name, definition.type]))
+    };
+    return {
+        ...buildGraphTables(iterateNodes(), iterateEdges(), shape, declarations),
+        metadata: { version, directed, attributes: metadataAttributes }
+    };
+}
+/** Resolves inherited namespace bindings without treating foreign elements as GEXF. */
+function normalizeNamespaces(element, inherited) {
+    const namespaces = Object.assign(Object.create(null), inherited);
+    for (const [name, value] of Object.entries(element)) {
+        if (name === '@_xmlns')
+            namespaces[''] = String(value);
+        else if (name.startsWith('@_xmlns:'))
+            namespaces[name.slice(8)] = String(value);
+    }
+    const normalized = Object.create(null);
+    for (const [name, value] of Object.entries(element)) {
+        if (name.startsWith('@_') || name === '#text' || name.startsWith('?')) {
+            normalized[name] = value;
+            continue;
+        }
+        const separator = name.indexOf(':');
+        const prefix = separator < 0 ? '' : name.slice(0, separator);
+        const localName = name.slice(separator + 1);
+        // Namespace declarations on this child also scope the child's own name.
+        const children = Array.isArray(value) ? value : [value];
+        for (const child of children) {
+            const object = typeof child === 'object' && child !== null ? child : {};
+            const namespace = object[prefix ? `@_xmlns:${prefix}` : '@_xmlns'] ?? namespaces[prefix];
+            const match = typeof namespace === 'string' ? GEXF_NAMESPACE.exec(namespace) : null;
+            const key = match
+                ? `${match[1] ? 'viz:' : ''}${localName}`
+                : namespace || prefix
+                    ? `foreign:${name}`
+                    : localName;
+            const childValue = typeof child === 'object' && child !== null
+                ? match || (!namespace && !prefix)
+                    ? normalizeNamespaces(object, namespaces)
+                    : object
+                : child;
+            if (normalized[key] === undefined)
+                normalized[key] = childValue;
+            else
+                normalized[key] = [
+                    ...(Array.isArray(normalized[key]) ? normalized[key] : [normalized[key]]),
+                    childValue
+                ];
+        }
+    }
+    assertStaticElement(normalized);
+    return normalized;
+}
+/** Rejects temporal and hierarchical constructs that flat static tables cannot represent. */
+function assertStaticElement(element) {
+    if ((element['@_mode'] !== undefined && element['@_mode'] !== 'static') ||
+        TEMPORAL_ATTRIBUTES.some(name => element[`@_${name}`] !== undefined) ||
+        element.spells !== undefined) {
+        throw new Error('Dynamic GEXF graphs and temporal values are unsupported.');
+    }
+    if (element['@_pid'] !== undefined ||
+        element.parents !== undefined ||
+        (element['@_id'] !== undefined && (element.nodes !== undefined || element.edges !== undefined))) {
+        throw new Error('Hierarchical GEXF graphs are unsupported.');
+    }
+}
+/** Reads a singleton element, including an empty element. */
+function getElement(value, name) {
+    if (value === '')
+        return {};
+    if (value && typeof value === 'object' && !Array.isArray(value))
+        return value;
+    throw new Error(`GEXF requires one <${name}> element.`);
+}
+/** Reads scalar text from elements that also declare local namespace bindings. */
+function readTextContent(value) {
+    if (typeof value === 'string')
+        return value;
+    const text = getElement(value, 'text')['#text'];
+    return typeof text === 'string' ? text : '';
+}
+/** Reads an optional container while rejecting repeated containers. */
+function getContainer(value) {
+    return value === undefined ? {} : getElement(value, 'container');
+}
+/** Reads repeated or singleton element records. */
+function getElements(value) {
+    if (value === undefined)
+        return [];
+    return (Array.isArray(value) ? value : [value]).map(entry => getElement(entry, 'record'));
+}
+/** Reads a required XML attribute without changing identifier or label whitespace. */
+function requireAttribute(element, name) {
+    const value = element[`@_${name}`];
+    if (typeof value !== 'string' || value === '')
+        throw new Error(`GEXF requires a ${name} attribute.`);
+    return value;
+}
+/** Reads a direction while rejecting bidirectional mutual edges. */
+function parseDirection(value) {
+    if (value !== 'directed' && value !== 'undirected')
+        throw new Error(`Unsupported GEXF edge type: ${String(value)}`);
+    return value === 'directed';
+}
+/** Maps supported GEXF scalar and list types to graph column declarations. */
+function parseAttributeType(value) {
+    if (value.startsWith('list') && !value.slice(4).startsWith('list')) {
+        return { list: parseAttributeType(value.slice(4)) };
+    }
+    if (value === 'integer' || value === 'byte' || value === 'short')
+        return 'int';
+    if (value === 'boolean' || value === 'long' || value === 'float' || value === 'double')
+        return value;
+    if (['string', 'anyURI', 'date', 'char', 'bigdecimal', 'biginteger'].includes(value))
+        return 'string';
+    throw new Error(`Unsupported GEXF attribute type: ${value}`);
+}
+/** Casts exact declared values; invalid scalar text survives Arrow promotion to Utf8. */
+function castValue(text, type) {
+    if (typeof type === 'object') {
+        return parseListValues(text).map(value => castValue(value, type.list));
+    }
+    if (type === 'string')
+        return text;
+    const trimmed = text.trim();
+    if (type === 'boolean') {
+        if (trimmed === 'true' || trimmed === '1')
+            return true;
+        if (trimmed === 'false' || trimmed === '0')
+            return false;
+        return text;
+    }
+    if (type === 'int' || type === 'long') {
+        if (!/^[+-]?\d+$/.test(trimmed))
+            return text;
+        return type === 'long'
+            ? BigInt(trimmed)
+            : Number.isSafeInteger(Number(trimmed))
+                ? Number(trimmed)
+                : text;
+    }
+    if (trimmed === 'INF')
+        return Infinity;
+    if (trimmed === '-INF')
+        return -Infinity;
+    if (trimmed === 'NaN')
+        return NaN;
+    if (!/^[+-]?(?:\d+(?:\.\d*)?|\.\d+)(?:[eE][+-]?\d+)?$/.test(trimmed))
+        return text;
+    const number = Number(trimmed);
+    const represented = type === 'float' ? Math.fround(number) : number;
+    const nonzero = /[1-9]/.test(trimmed.split(/[eE]/)[0]);
+    return Number.isFinite(represented) && (represented !== 0 || !nonzero) ? number : text;
+}
+/** Reads bracketed and legacy lists, preserving quoted delimiters and string whitespace. */
+function parseListValues(text) {
+    const trimmed = text.trim();
+    const bracketed = trimmed.startsWith('[');
+    if (bracketed !== trimmed.endsWith(']'))
+        throw new Error('Invalid GEXF list brackets.');
+    const contents = bracketed ? trimmed.slice(1, -1) : trimmed;
+    if (!contents.trim())
+        return [];
+    const values = [];
+    let value = '';
+    let quote = '';
+    let quoted = false;
+    let closed = false;
+    for (let index = 0; index < contents.length; index++) {
+        const character = contents[index];
+        if (quote) {
+            if (character === '\\' && (contents[index + 1] === quote || contents[index + 1] === '\\')) {
+                value += contents[++index];
+            }
+            else if (character === quote) {
+                quote = '';
+                closed = true;
+            }
+            else
+                value += character;
+        }
+        else if (character === ',' || (!bracketed && (character === '|' || character === ';'))) {
+            values.push(quoted ? value : value.trim());
+            value = '';
+            quoted = false;
+            closed = false;
+        }
+        else if (closed) {
+            if (character.trim())
+                throw new Error('Invalid GEXF list text after a quote.');
+        }
+        else if ((character === "'" || character === '"') && !value.trim()) {
+            quote = character;
+            quoted = true;
+            value = '';
+        }
+        else
+            value += character;
+    }
+    if (quote)
+        throw new Error('Unterminated GEXF list quote.');
+    values.push(quoted ? value : value.trim());
+    return values;
+}
+/** Converts application attributes and native GEXF properties to a collision-free record. */
+function parseRecord(element, definitions, identifier) {
+    const attributes = Object.create(null);
+    for (const definition of definitions.values()) {
+        if (definition.defaultValue !== undefined)
+            attributes[definition.name] = Array.isArray(definition.defaultValue)
+                ? [...definition.defaultValue]
+                : definition.defaultValue;
+    }
+    for (const attvalue of getElements(getContainer(element.attvalues).attvalue)) {
+        const key = requireAttribute(attvalue, 'for');
+        const definition = definitions.get(key);
+        if (!definition)
+            throw new Error(`Undeclared GEXF attribute: ${key}`);
+        attributes[definition.name] = castValue(requireValue(attvalue), definition.type);
+    }
+    const native = Object.create(null);
+    if (element['@_weight'] !== undefined)
+        native.weight = castValue(String(element['@_weight']), 'double');
+    if (element['@_kind'] !== undefined)
+        native.kind = element['@_kind'];
+    const visualization = Object.create(null);
+    for (const name of ['color', 'position', 'size', 'shape', 'thickness']) {
+        const value = element[`viz:${name}`];
+        if (value === undefined)
+            continue;
+        const properties = Object.create(null);
+        for (const [key, property] of Object.entries(getElement(value, `viz:${name}`))) {
+            if (key.startsWith('@_') && !key.startsWith('@_xmlns')) {
+                const propertyName = key.slice(2);
+                properties[propertyName] =
+                    ['r', 'g', 'b', 'a', 'x', 'y', 'z'].includes(propertyName) ||
+                        (propertyName === 'value' && (name === 'size' || name === 'thickness'))
+                        ? castValue(String(property), 'double')
+                        : property;
+            }
+        }
+        visualization[name] = properties;
+    }
+    if (Object.keys(visualization).length)
+        native.viz = visualization;
+    if (Object.keys(native).length)
+        attributes.gexf = native;
+    return {
+        id: identifier ?? requireAttribute(element, 'id'),
+        label: element['@_label'],
+        attributes
+    };
+}
+/** Reads an attribute value, allowing the empty string. */
+function requireValue(element) {
+    const value = element['@_value'];
+    if (typeof value !== 'string')
+        throw new Error('GEXF attvalue requires a value attribute.');
+    return value;
+}
+//# sourceMappingURL=parse-gexf.js.map

package/dist/lib/parse-gexf.js.map

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package/dist/lib/parse-graphml.d.ts

@@ -1,6 +1,7 @@
-import type { GraphData } from "../graph-types.js";
+import type { GraphData, GraphOutput, GraphShape } from "../graph-types.js";
 /** Accepted GraphML document inputs. */
 export type GraphMLInput = string | ArrayBuffer | Uint8Array;
 /** Parses the first GraphML graph into framework-independent node and edge records. */
 export declare function parseGraphML(graphml: GraphMLInput): GraphData;
+export declare function parseGraphML(graphml: GraphMLInput, shape: GraphShape): GraphOutput;
 //# sourceMappingURL=parse-graphml.d.ts.map

package/dist/lib/parse-graphml.d.ts.map

@@ -1 +1 @@
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