@loaders.gl/geotiff 4.2.0-alpha.4 → 4.2.0-alpha.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/dist.dev.js +222 -284
- package/dist/dist.min.js +30 -0
- package/dist/geotiff-loader.js +71 -52
- package/dist/index.cjs +23 -20
- package/dist/index.cjs.map +7 -0
- package/dist/index.d.ts +3 -3
- package/dist/index.d.ts.map +1 -1
- package/dist/index.js +3 -1
- package/dist/lib/load-geotiff.d.ts +1 -1
- package/dist/lib/load-geotiff.d.ts.map +1 -1
- package/dist/lib/load-geotiff.js +57 -21
- package/dist/lib/ome/load-ome-tiff.d.ts +1 -1
- package/dist/lib/ome/load-ome-tiff.d.ts.map +1 -1
- package/dist/lib/ome/load-ome-tiff.js +35 -41
- package/dist/lib/ome/ome-indexers.d.ts +1 -1
- package/dist/lib/ome/ome-indexers.d.ts.map +1 -1
- package/dist/lib/ome/ome-indexers.js +102 -114
- package/dist/lib/ome/ome-utils.d.ts +1 -1
- package/dist/lib/ome/ome-utils.d.ts.map +1 -1
- package/dist/lib/ome/ome-utils.js +56 -60
- package/dist/lib/ome/omexml.js +53 -55
- package/dist/lib/ome/utils.d.ts +2 -2
- package/dist/lib/ome/utils.d.ts.map +1 -1
- package/dist/lib/ome/utils.js +23 -12
- package/dist/lib/tiff-pixel-source.d.ts +1 -1
- package/dist/lib/tiff-pixel-source.d.ts.map +1 -1
- package/dist/lib/tiff-pixel-source.js +64 -84
- package/dist/lib/utils/tiff-utils.d.ts +1 -1
- package/dist/lib/utils/tiff-utils.d.ts.map +1 -1
- package/dist/lib/utils/tiff-utils.js +31 -18
- package/dist/loaders.js +40 -27
- package/dist/types.d.ts +1 -1
- package/dist/types.d.ts.map +1 -1
- package/dist/types.js +3 -1
- package/package.json +9 -4
- package/dist/geotiff-loader.js.map +0 -1
- package/dist/index.js.map +0 -1
- package/dist/lib/load-geotiff.js.map +0 -1
- package/dist/lib/ome/load-ome-tiff.js.map +0 -1
- package/dist/lib/ome/ome-indexers.js.map +0 -1
- package/dist/lib/ome/ome-utils.js.map +0 -1
- package/dist/lib/ome/omexml.js.map +0 -1
- package/dist/lib/ome/utils.js.map +0 -1
- package/dist/lib/tiff-pixel-source.js.map +0 -1
- package/dist/lib/utils/Pool.ts.disabled +0 -99
- package/dist/lib/utils/decoder.worker.ts.disabled +0 -21
- package/dist/lib/utils/proxies.ts.disabled +0 -96
- package/dist/lib/utils/tiff-utils.js.map +0 -1
- package/dist/loaders.js.map +0 -1
- package/dist/types.js.map +0 -1
package/dist/dist.dev.js
CHANGED
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@@ -2,8 +2,8 @@
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if (typeof exports === 'object' && typeof module === 'object')
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module.exports = factory();
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else if (typeof define === 'function' && define.amd) define([], factory);
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else if (typeof exports === 'object') exports['
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else root['
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else if (typeof exports === 'object') exports['loaders'] = factory();
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else root['loaders'] = factory();})(globalThis, function () {
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"use strict";
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var __exports__ = (() => {
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var __create = Object.create;
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@@ -30,6 +30,7 @@ var __exports__ = (() => {
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}
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return to;
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};
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var __reExport = (target, mod, secondTarget) => (__copyProps(target, mod, "default"), secondTarget && __copyProps(secondTarget, mod, "default"));
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var __toESM = (mod, isNodeMode, target) => (target = mod != null ? __create(__getProtoOf(mod)) : {}, __copyProps(
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// If the importer is in node compatibility mode or this is not an ESM
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// file that has been converted to a CommonJS file using a Babel-
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@@ -40,6 +41,13 @@ var __exports__ = (() => {
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));
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var __toCommonJS = (mod) => __copyProps(__defProp({}, "__esModule", { value: true }), mod);
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// external-global-plugin:@loaders.gl/core
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var require_core = __commonJS({
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"external-global-plugin:@loaders.gl/core"(exports, module) {
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module.exports = globalThis.loaders;
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}
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});
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// ../../node_modules/xml-utils/get-attribute.js
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var require_get_attribute = __commonJS({
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"../../node_modules/xml-utils/get-attribute.js"(exports, module) {
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}
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});
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// (disabled)
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// (disabled):url
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var require_url = __commonJS({
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"(disabled):url"() {
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}
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});
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var util = require_util();
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var defaultOptions = {
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allowBooleanAttributes: false,
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//A tag can have attributes without any value
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unpairedTags: []
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};
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exports.validate = function(xmlData, options) {
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const otg = tags.pop();
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if (tagName !== otg.tagName) {
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let openPos = getLineNumberForPosition(xmlData, otg.tagStartPos);
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return getErrorObject(
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return getErrorObject(
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"InvalidTag",
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"Expected closing tag '" + otg.tagName + "' (opened in line " + openPos.line + ", col " + openPos.col + ") instead of closing tag '" + tagName + "'.",
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getLineNumberForPosition(xmlData, tagStartPos)
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);
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}
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if (tags.length == 0) {
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reachedRoot = true;
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return getErrorObject("InvalidXml", "Multiple possible root nodes found.", getLineNumberForPosition(xmlData, i));
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} else if (options.unpairedTags.indexOf(tagName) !== -1) {
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} else {
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tags.push({
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tagName,
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tagStartPos
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});
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tags.push({ tagName, tagStartPos });
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}
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tagFound = true;
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}
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} else if (tags.length == 1) {
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return getErrorObject("InvalidTag", "Unclosed tag '" + tags[0].tagName + "'.", getLineNumberForPosition(xmlData, tags[0].tagStartPos));
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} else if (tags.length > 0) {
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return getErrorObject("InvalidXml", "Invalid '" + JSON.stringify(tags.map((t) => t.tagName), null, 4).replace(/\r?\n/g, "") + "' found.", {
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line: 1,
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col: 1
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});
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return getErrorObject("InvalidXml", "Invalid '" + JSON.stringify(tags.map((t) => t.tagName), null, 4).replace(/\r?\n/g, "") + "' found.", { line: 1, col: 1 });
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}
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return true;
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};
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const lines = xmlData.substring(0, index).split(/\r?\n/);
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return {
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line: lines.length,
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// column number is last line's length + 1, because column numbering starts at 1:
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col: lines[lines.length - 1].length + 1
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};
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}
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textNodeName: "#text",
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ignoreAttributes: true,
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removeNSPrefix: false,
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// remove NS from tag name or attribute name if true
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allowBooleanAttributes: false,
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//ignoreRootElement : false,
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parseTagValue: true,
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parseAttributeValue: false,
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trimValues: true,
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//Trim string values of tag and attributes
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cdataPropName: false,
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numberParseOptions: {
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hex: true,
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return val2;
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},
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stopNodes: [],
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alwaysCreateTextNode: false,
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isArray: () => false,
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commentPropName: false,
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updateTag: function(tagName, jPath, attrs) {
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// skipEmptyListItem: false
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};
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"apos": { regex: /&(apos|#39|#x27);/g, val: "'" },
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"gt": { regex: /&(gt|#62|#x3E);/g, val: ">" },
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this.ampEntity = { regex: /&(amp|#38|#x26);/g, val: "&" };
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}
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"space": { regex: /&(nbsp|#160);/g, val: " " },
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// "amp" : { regex: /&(amp|#38);/g, val: "&" },
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// "quot" : { regex: /&(quot|#34);/g, val: "\"" },
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// "apos" : { regex: /&(apos|#39);/g, val: "'" },
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"cent": { regex: /&(cent|#162);/g, val: "\xA2" },
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"pound": { regex: /&(pound|#163);/g, val: "\xA3" },
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"yen": { regex: /&(yen|#165);/g, val: "\xA5" },
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"euro": { regex: /&(euro|#8364);/g, val: "\u20AC" },
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"copyright": { regex: /&(copy|#169);/g, val: "\xA9" },
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"reg": { regex: /&(reg|#174);/g, val: "\xAE" },
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"inr": { regex: /&(inr|#8377);/g, val: "\u20B9" }
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} else if (typeof newVal !== typeof oldVal || newVal !== oldVal) {
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|
+
oldVal,
|
|
8692
|
+
this.options.parseAttributeValue,
|
|
8693
|
+
this.options.numberParseOptions
|
|
8694
|
+
);
|
|
8721
8695
|
}
|
|
8722
8696
|
} else if (this.options.allowBooleanAttributes) {
|
|
8723
8697
|
attrs[aName] = true;
|
|
@@ -8794,9 +8768,7 @@ var __exports__ = (() => {
|
|
|
8794
8768
|
if (this.options.commentPropName) {
|
|
8795
8769
|
const comment = xmlData.substring(i + 4, endIndex - 2);
|
|
8796
8770
|
textData = this.saveTextToParentTag(textData, currentNode, jPath);
|
|
8797
|
-
currentNode.add(this.options.commentPropName, [{
|
|
8798
|
-
[this.options.textNodeName]: comment
|
|
8799
|
-
}]);
|
|
8771
|
+
currentNode.add(this.options.commentPropName, [{ [this.options.textNodeName]: comment }]);
|
|
8800
8772
|
}
|
|
8801
8773
|
i = endIndex;
|
|
8802
8774
|
} else if (xmlData.substr(i + 1, 2) === "!D") {
|
|
@@ -8808,9 +8780,7 @@ var __exports__ = (() => {
|
|
|
8808
8780
|
const tagExp = xmlData.substring(i + 9, closeIndex);
|
|
8809
8781
|
textData = this.saveTextToParentTag(textData, currentNode, jPath);
|
|
8810
8782
|
if (this.options.cdataPropName) {
|
|
8811
|
-
currentNode.add(this.options.cdataPropName, [{
|
|
8812
|
-
[this.options.textNodeName]: tagExp
|
|
8813
|
-
}]);
|
|
8783
|
+
currentNode.add(this.options.cdataPropName, [{ [this.options.textNodeName]: tagExp }]);
|
|
8814
8784
|
} else {
|
|
8815
8785
|
let val2 = this.parseTextData(tagExp, currentNode.tagname, jPath, true, false, true);
|
|
8816
8786
|
if (val2 == void 0)
|
|
@@ -8933,7 +8903,14 @@ var __exports__ = (() => {
|
|
|
8933
8903
|
if (textData) {
|
|
8934
8904
|
if (isLeafNode === void 0)
|
|
8935
8905
|
isLeafNode = Object.keys(currentNode.child).length === 0;
|
|
8936
|
-
textData = this.parseTextData(
|
|
8906
|
+
textData = this.parseTextData(
|
|
8907
|
+
textData,
|
|
8908
|
+
currentNode.tagname,
|
|
8909
|
+
jPath,
|
|
8910
|
+
false,
|
|
8911
|
+
currentNode[":@"] ? Object.keys(currentNode[":@"]).length !== 0 : false,
|
|
8912
|
+
isLeafNode
|
|
8913
|
+
);
|
|
8937
8914
|
if (textData !== void 0 && textData !== "")
|
|
8938
8915
|
currentNode.add(this.options.textNodeName, textData);
|
|
8939
8916
|
textData = "";
|
|
@@ -9157,9 +9134,7 @@ var __exports__ = (() => {
|
|
|
9157
9134
|
}
|
|
9158
9135
|
}
|
|
9159
9136
|
function isLeafTag(obj, options) {
|
|
9160
|
-
const {
|
|
9161
|
-
textNodeName
|
|
9162
|
-
} = options;
|
|
9137
|
+
const { textNodeName } = options;
|
|
9163
9138
|
const propCount = Object.keys(obj).length;
|
|
9164
9139
|
if (propCount === 0) {
|
|
9165
9140
|
return true;
|
|
@@ -9176,19 +9151,20 @@ var __exports__ = (() => {
|
|
|
9176
9151
|
// ../../node_modules/fast-xml-parser/src/xmlparser/XMLParser.js
|
|
9177
9152
|
var require_XMLParser = __commonJS({
|
|
9178
9153
|
"../../node_modules/fast-xml-parser/src/xmlparser/XMLParser.js"(exports, module) {
|
|
9179
|
-
var {
|
|
9180
|
-
buildOptions
|
|
9181
|
-
} = require_OptionsBuilder();
|
|
9154
|
+
var { buildOptions } = require_OptionsBuilder();
|
|
9182
9155
|
var OrderedObjParser = require_OrderedObjParser();
|
|
9183
|
-
var {
|
|
9184
|
-
prettify
|
|
9185
|
-
} = require_node2json();
|
|
9156
|
+
var { prettify } = require_node2json();
|
|
9186
9157
|
var validator = require_validator();
|
|
9187
9158
|
var XMLParser2 = class {
|
|
9188
9159
|
constructor(options) {
|
|
9189
9160
|
this.externalEntities = {};
|
|
9190
9161
|
this.options = buildOptions(options);
|
|
9191
9162
|
}
|
|
9163
|
+
/**
|
|
9164
|
+
* Parse XML dats to JS object
|
|
9165
|
+
* @param {string|Buffer} xmlData
|
|
9166
|
+
* @param {boolean|Object} validationOption
|
|
9167
|
+
*/
|
|
9192
9168
|
parse(xmlData, validationOption) {
|
|
9193
9169
|
if (typeof xmlData === "string") {
|
|
9194
9170
|
} else if (xmlData.toString) {
|
|
@@ -9212,6 +9188,11 @@ var __exports__ = (() => {
|
|
|
9212
9188
|
else
|
|
9213
9189
|
return prettify(orderedResult, this.options);
|
|
9214
9190
|
}
|
|
9191
|
+
/**
|
|
9192
|
+
* Add Entity which is not by default supported by this library
|
|
9193
|
+
* @param {string} key
|
|
9194
|
+
* @param {string} value
|
|
9195
|
+
*/
|
|
9215
9196
|
addEntity(key, value) {
|
|
9216
9197
|
if (value.indexOf("&") !== -1) {
|
|
9217
9198
|
throw new Error("Entity value can't have '&'");
|
|
@@ -9381,24 +9362,18 @@ var __exports__ = (() => {
|
|
|
9381
9362
|
preserveOrder: false,
|
|
9382
9363
|
commentPropName: false,
|
|
9383
9364
|
unpairedTags: [],
|
|
9384
|
-
entities: [
|
|
9385
|
-
regex: new RegExp("&", "g"),
|
|
9386
|
-
|
|
9387
|
-
|
|
9388
|
-
regex: new RegExp("
|
|
9389
|
-
val: "&
|
|
9390
|
-
|
|
9391
|
-
|
|
9392
|
-
val: "<"
|
|
9393
|
-
}, {
|
|
9394
|
-
regex: new RegExp("'", "g"),
|
|
9395
|
-
val: "'"
|
|
9396
|
-
}, {
|
|
9397
|
-
regex: new RegExp('"', "g"),
|
|
9398
|
-
val: """
|
|
9399
|
-
}],
|
|
9365
|
+
entities: [
|
|
9366
|
+
{ regex: new RegExp("&", "g"), val: "&" },
|
|
9367
|
+
//it must be on top
|
|
9368
|
+
{ regex: new RegExp(">", "g"), val: ">" },
|
|
9369
|
+
{ regex: new RegExp("<", "g"), val: "<" },
|
|
9370
|
+
{ regex: new RegExp("'", "g"), val: "'" },
|
|
9371
|
+
{ regex: new RegExp('"', "g"), val: """ }
|
|
9372
|
+
],
|
|
9400
9373
|
processEntities: true,
|
|
9401
9374
|
stopNodes: [],
|
|
9375
|
+
// transformTagName: false,
|
|
9376
|
+
// transformAttributeName: false,
|
|
9402
9377
|
oneListGroup: false
|
|
9403
9378
|
};
|
|
9404
9379
|
function Builder(options) {
|
|
@@ -9497,10 +9472,7 @@ var __exports__ = (() => {
|
|
|
9497
9472
|
}
|
|
9498
9473
|
}
|
|
9499
9474
|
}
|
|
9500
|
-
return {
|
|
9501
|
-
attrStr,
|
|
9502
|
-
val: val2
|
|
9503
|
-
};
|
|
9475
|
+
return { attrStr, val: val2 };
|
|
9504
9476
|
};
|
|
9505
9477
|
Builder.prototype.buildAttrPairStr = function(attrName, val2) {
|
|
9506
9478
|
val2 = this.options.attributeValueProcessor(attrName, "" + val2);
|
|
@@ -9608,13 +9580,14 @@ var __exports__ = (() => {
|
|
|
9608
9580
|
}
|
|
9609
9581
|
});
|
|
9610
9582
|
|
|
9611
|
-
//
|
|
9612
|
-
var
|
|
9613
|
-
__export(
|
|
9583
|
+
// bundle.ts
|
|
9584
|
+
var bundle_exports = {};
|
|
9585
|
+
__export(bundle_exports, {
|
|
9614
9586
|
GeoTIFFLoader: () => GeoTIFFLoader,
|
|
9615
9587
|
TiffPixelSource: () => TiffPixelSource,
|
|
9616
9588
|
loadGeoTiff: () => loadGeoTiff
|
|
9617
9589
|
});
|
|
9590
|
+
__reExport(bundle_exports, __toESM(require_core(), 1));
|
|
9618
9591
|
|
|
9619
9592
|
// ../../node_modules/@petamoriken/float16/src/_util/messages.mjs
|
|
9620
9593
|
var CANNOT_CONVERT_UNDEFINED_OR_NULL_TO_OBJECT = "Cannot convert undefined or null to object";
|
|
@@ -9626,7 +9599,12 @@ var __exports__ = (() => {
|
|
|
9626
9599
|
};
|
|
9627
9600
|
}
|
|
9628
9601
|
function uncurryThisGetter(target, key) {
|
|
9629
|
-
return uncurryThis(
|
|
9602
|
+
return uncurryThis(
|
|
9603
|
+
ReflectGetOwnPropertyDescriptor(
|
|
9604
|
+
target,
|
|
9605
|
+
key
|
|
9606
|
+
).get
|
|
9607
|
+
);
|
|
9630
9608
|
}
|
|
9631
9609
|
var {
|
|
9632
9610
|
apply: ReflectApply,
|
|
@@ -9659,28 +9637,41 @@ var __exports__ = (() => {
|
|
|
9659
9637
|
is: ObjectIs
|
|
9660
9638
|
} = NativeObject;
|
|
9661
9639
|
var ObjectPrototype = NativeObject.prototype;
|
|
9662
|
-
var ObjectPrototype__lookupGetter__ =
|
|
9663
|
-
|
|
9664
|
-
|
|
9665
|
-
|
|
9666
|
-
|
|
9667
|
-
|
|
9668
|
-
|
|
9669
|
-
|
|
9670
|
-
|
|
9671
|
-
|
|
9672
|
-
}
|
|
9673
|
-
return;
|
|
9640
|
+
var ObjectPrototype__lookupGetter__ = (
|
|
9641
|
+
/** @type {any} */
|
|
9642
|
+
ObjectPrototype.__lookupGetter__ ? uncurryThis(
|
|
9643
|
+
/** @type {any} */
|
|
9644
|
+
ObjectPrototype.__lookupGetter__
|
|
9645
|
+
) : (object, key) => {
|
|
9646
|
+
if (object == null) {
|
|
9647
|
+
throw NativeTypeError(
|
|
9648
|
+
CANNOT_CONVERT_UNDEFINED_OR_NULL_TO_OBJECT
|
|
9649
|
+
);
|
|
9674
9650
|
}
|
|
9675
|
-
|
|
9676
|
-
|
|
9677
|
-
|
|
9651
|
+
let target = NativeObject(object);
|
|
9652
|
+
do {
|
|
9653
|
+
const descriptor = ReflectGetOwnPropertyDescriptor(target, key);
|
|
9654
|
+
if (descriptor !== void 0) {
|
|
9655
|
+
if (ObjectHasOwn(descriptor, "get")) {
|
|
9656
|
+
return descriptor.get;
|
|
9657
|
+
}
|
|
9658
|
+
return;
|
|
9659
|
+
}
|
|
9660
|
+
} while ((target = ReflectGetPrototypeOf(target)) !== null);
|
|
9661
|
+
}
|
|
9662
|
+
);
|
|
9663
|
+
var ObjectHasOwn = (
|
|
9664
|
+
/** @type {any} */
|
|
9665
|
+
NativeObject.hasOwn || uncurryThis(ObjectPrototype.hasOwnProperty)
|
|
9666
|
+
);
|
|
9678
9667
|
var NativeArray = Array;
|
|
9679
9668
|
var ArrayIsArray = NativeArray.isArray;
|
|
9680
9669
|
var ArrayPrototype = NativeArray.prototype;
|
|
9681
9670
|
var ArrayPrototypeJoin = uncurryThis(ArrayPrototype.join);
|
|
9682
9671
|
var ArrayPrototypePush = uncurryThis(ArrayPrototype.push);
|
|
9683
|
-
var ArrayPrototypeToLocaleString = uncurryThis(
|
|
9672
|
+
var ArrayPrototypeToLocaleString = uncurryThis(
|
|
9673
|
+
ArrayPrototype.toLocaleString
|
|
9674
|
+
);
|
|
9684
9675
|
var NativeArrayPrototypeSymbolIterator = ArrayPrototype[SymbolIterator];
|
|
9685
9676
|
var ArrayPrototypeSymbolIterator = uncurryThis(NativeArrayPrototypeSymbolIterator);
|
|
9686
9677
|
var NativeArrayBuffer = ArrayBuffer;
|
|
@@ -9695,19 +9686,41 @@ var __exports__ = (() => {
|
|
|
9695
9686
|
var TypedArrayPrototype = TypedArray.prototype;
|
|
9696
9687
|
var NativeTypedArrayPrototypeSymbolIterator = TypedArrayPrototype[SymbolIterator];
|
|
9697
9688
|
var TypedArrayPrototypeKeys = uncurryThis(TypedArrayPrototype.keys);
|
|
9698
|
-
var TypedArrayPrototypeValues = uncurryThis(
|
|
9699
|
-
|
|
9689
|
+
var TypedArrayPrototypeValues = uncurryThis(
|
|
9690
|
+
TypedArrayPrototype.values
|
|
9691
|
+
);
|
|
9692
|
+
var TypedArrayPrototypeEntries = uncurryThis(
|
|
9693
|
+
TypedArrayPrototype.entries
|
|
9694
|
+
);
|
|
9700
9695
|
var TypedArrayPrototypeSet = uncurryThis(TypedArrayPrototype.set);
|
|
9701
|
-
var TypedArrayPrototypeReverse = uncurryThis(
|
|
9696
|
+
var TypedArrayPrototypeReverse = uncurryThis(
|
|
9697
|
+
TypedArrayPrototype.reverse
|
|
9698
|
+
);
|
|
9702
9699
|
var TypedArrayPrototypeFill = uncurryThis(TypedArrayPrototype.fill);
|
|
9703
|
-
var TypedArrayPrototypeCopyWithin = uncurryThis(
|
|
9700
|
+
var TypedArrayPrototypeCopyWithin = uncurryThis(
|
|
9701
|
+
TypedArrayPrototype.copyWithin
|
|
9702
|
+
);
|
|
9704
9703
|
var TypedArrayPrototypeSort = uncurryThis(TypedArrayPrototype.sort);
|
|
9705
9704
|
var TypedArrayPrototypeSlice = uncurryThis(TypedArrayPrototype.slice);
|
|
9706
|
-
var TypedArrayPrototypeSubarray = uncurryThis(
|
|
9707
|
-
|
|
9708
|
-
|
|
9709
|
-
var
|
|
9710
|
-
|
|
9705
|
+
var TypedArrayPrototypeSubarray = uncurryThis(
|
|
9706
|
+
TypedArrayPrototype.subarray
|
|
9707
|
+
);
|
|
9708
|
+
var TypedArrayPrototypeGetBuffer = uncurryThisGetter(
|
|
9709
|
+
TypedArrayPrototype,
|
|
9710
|
+
"buffer"
|
|
9711
|
+
);
|
|
9712
|
+
var TypedArrayPrototypeGetByteOffset = uncurryThisGetter(
|
|
9713
|
+
TypedArrayPrototype,
|
|
9714
|
+
"byteOffset"
|
|
9715
|
+
);
|
|
9716
|
+
var TypedArrayPrototypeGetLength = uncurryThisGetter(
|
|
9717
|
+
TypedArrayPrototype,
|
|
9718
|
+
"length"
|
|
9719
|
+
);
|
|
9720
|
+
var TypedArrayPrototypeGetSymbolToStringTag = uncurryThisGetter(
|
|
9721
|
+
TypedArrayPrototype,
|
|
9722
|
+
SymbolToStringTag
|
|
9723
|
+
);
|
|
9711
9724
|
var NativeUint32Array = Uint32Array;
|
|
9712
9725
|
var NativeFloat32Array = Float32Array;
|
|
9713
9726
|
var ArrayIteratorPrototype = ReflectGetPrototypeOf([][SymbolIterator]());
|
|
@@ -9716,8 +9729,12 @@ var __exports__ = (() => {
|
|
|
9716
9729
|
}().next);
|
|
9717
9730
|
var IteratorPrototype = ReflectGetPrototypeOf(ArrayIteratorPrototype);
|
|
9718
9731
|
var DataViewPrototype = DataView.prototype;
|
|
9719
|
-
var DataViewPrototypeGetUint16 = uncurryThis(
|
|
9720
|
-
|
|
9732
|
+
var DataViewPrototypeGetUint16 = uncurryThis(
|
|
9733
|
+
DataViewPrototype.getUint16
|
|
9734
|
+
);
|
|
9735
|
+
var DataViewPrototypeSetUint16 = uncurryThis(
|
|
9736
|
+
DataViewPrototype.setUint16
|
|
9737
|
+
);
|
|
9721
9738
|
var NativeTypeError = TypeError;
|
|
9722
9739
|
var NativeWeakSet = WeakSet;
|
|
9723
9740
|
var WeakSetPrototype = NativeWeakSet.prototype;
|
|
@@ -9844,7 +9861,9 @@ var __exports__ = (() => {
|
|
|
9844
9861
|
|
|
9845
9862
|
// ../../node_modules/@petamoriken/float16/src/DataView.mjs
|
|
9846
9863
|
function getFloat16(dataView, byteOffset, ...opts) {
|
|
9847
|
-
return convertToNumber(
|
|
9864
|
+
return convertToNumber(
|
|
9865
|
+
DataViewPrototypeGetUint16(dataView, byteOffset, ...safeIfNeeded(opts))
|
|
9866
|
+
);
|
|
9848
9867
|
}
|
|
9849
9868
|
|
|
9850
9869
|
// ../../node_modules/geotiff/dist-module/geotiffimage.js
|
|
@@ -12614,7 +12633,7 @@ var __exports__ = (() => {
|
|
|
12614
12633
|
}
|
|
12615
12634
|
|
|
12616
12635
|
// src/geotiff-loader.ts
|
|
12617
|
-
var VERSION =
|
|
12636
|
+
var VERSION = typeof __VERSION__ !== "undefined" ? __VERSION__ : "latest";
|
|
12618
12637
|
var GeoTIFFLoader = {
|
|
12619
12638
|
id: "geotiff",
|
|
12620
12639
|
name: "GeoTIFF",
|
|
@@ -12673,15 +12692,19 @@ var __exports__ = (() => {
|
|
|
12673
12692
|
function getImageSize(source) {
|
|
12674
12693
|
const interleaved = isInterleaved(source.shape);
|
|
12675
12694
|
const [height, width] = source.shape.slice(interleaved ? -3 : -2);
|
|
12676
|
-
return {
|
|
12677
|
-
height,
|
|
12678
|
-
width
|
|
12679
|
-
};
|
|
12695
|
+
return { height, width };
|
|
12680
12696
|
}
|
|
12681
12697
|
var SIGNAL_ABORTED = "__vivSignalAborted";
|
|
12682
12698
|
|
|
12683
12699
|
// src/lib/tiff-pixel-source.ts
|
|
12684
12700
|
var TiffPixelSource = class {
|
|
12701
|
+
dtype;
|
|
12702
|
+
tileSize;
|
|
12703
|
+
shape;
|
|
12704
|
+
labels;
|
|
12705
|
+
meta;
|
|
12706
|
+
_indexer;
|
|
12707
|
+
// eslint-disable-next-line max-params
|
|
12685
12708
|
constructor(indexer, dtype, tileSize, shape, labels, meta) {
|
|
12686
12709
|
this._indexer = indexer;
|
|
12687
12710
|
this.dtype = dtype;
|
|
@@ -12690,42 +12713,21 @@ var __exports__ = (() => {
|
|
|
12690
12713
|
this.labels = labels;
|
|
12691
12714
|
this.meta = meta;
|
|
12692
12715
|
}
|
|
12693
|
-
async getRaster({
|
|
12694
|
-
selection,
|
|
12695
|
-
signal
|
|
12696
|
-
}) {
|
|
12716
|
+
async getRaster({ selection, signal }) {
|
|
12697
12717
|
const image = await this._indexer(selection);
|
|
12698
|
-
return this._readRasters(image, {
|
|
12699
|
-
signal
|
|
12700
|
-
});
|
|
12718
|
+
return this._readRasters(image, { signal });
|
|
12701
12719
|
}
|
|
12702
|
-
async getTile({
|
|
12703
|
-
x,
|
|
12704
|
-
y,
|
|
12705
|
-
selection,
|
|
12706
|
-
signal
|
|
12707
|
-
}) {
|
|
12708
|
-
const {
|
|
12709
|
-
height,
|
|
12710
|
-
width
|
|
12711
|
-
} = this._getTileExtent(x, y);
|
|
12720
|
+
async getTile({ x, y, selection, signal }) {
|
|
12721
|
+
const { height, width } = this._getTileExtent(x, y);
|
|
12712
12722
|
const x0 = x * this.tileSize;
|
|
12713
12723
|
const y0 = y * this.tileSize;
|
|
12714
12724
|
const window2 = [x0, y0, x0 + width, y0 + height];
|
|
12715
12725
|
const image = await this._indexer(selection);
|
|
12716
|
-
return this._readRasters(image, {
|
|
12717
|
-
window: window2,
|
|
12718
|
-
width,
|
|
12719
|
-
height,
|
|
12720
|
-
signal
|
|
12721
|
-
});
|
|
12726
|
+
return this._readRasters(image, { window: window2, width, height, signal });
|
|
12722
12727
|
}
|
|
12723
12728
|
async _readRasters(image, props) {
|
|
12724
12729
|
const interleave = isInterleaved(this.shape);
|
|
12725
|
-
const raster = await image.readRasters({
|
|
12726
|
-
interleave,
|
|
12727
|
-
...props
|
|
12728
|
-
});
|
|
12730
|
+
const raster = await image.readRasters({ interleave, ...props });
|
|
12729
12731
|
if (props?.signal?.aborted) {
|
|
12730
12732
|
throw SIGNAL_ABORTED;
|
|
12731
12733
|
}
|
|
@@ -12736,11 +12738,11 @@ var __exports__ = (() => {
|
|
|
12736
12738
|
height: raster.height
|
|
12737
12739
|
};
|
|
12738
12740
|
}
|
|
12741
|
+
/*
|
|
12742
|
+
* Computes tile size given x, y coord.
|
|
12743
|
+
*/
|
|
12739
12744
|
_getTileExtent(x, y) {
|
|
12740
|
-
const {
|
|
12741
|
-
height: zoomLevelHeight,
|
|
12742
|
-
width: zoomLevelWidth
|
|
12743
|
-
} = getImageSize(this);
|
|
12745
|
+
const { height: zoomLevelHeight, width: zoomLevelWidth } = getImageSize(this);
|
|
12744
12746
|
let height = this.tileSize;
|
|
12745
12747
|
let width = this.tileSize;
|
|
12746
12748
|
const maxXTileCoord = Math.floor(zoomLevelWidth / this.tileSize);
|
|
@@ -12751,10 +12753,7 @@ var __exports__ = (() => {
|
|
|
12751
12753
|
if (y === maxYTileCoord) {
|
|
12752
12754
|
height = zoomLevelHeight % this.tileSize;
|
|
12753
12755
|
}
|
|
12754
|
-
return {
|
|
12755
|
-
height,
|
|
12756
|
-
width
|
|
12757
|
-
};
|
|
12756
|
+
return { height, width };
|
|
12758
12757
|
}
|
|
12759
12758
|
onTileError(err2) {
|
|
12760
12759
|
console.error(err2);
|
|
@@ -12764,11 +12763,7 @@ var __exports__ = (() => {
|
|
|
12764
12763
|
// src/lib/ome/ome-indexers.ts
|
|
12765
12764
|
function getOmeLegacyIndexer(tiff, rootMeta) {
|
|
12766
12765
|
const imgMeta = rootMeta[0];
|
|
12767
|
-
const {
|
|
12768
|
-
SizeT,
|
|
12769
|
-
SizeC,
|
|
12770
|
-
SizeZ
|
|
12771
|
-
} = imgMeta.Pixels;
|
|
12766
|
+
const { SizeT, SizeC, SizeZ } = imgMeta.Pixels;
|
|
12772
12767
|
const ifdIndexer = getOmeIFDIndexer(imgMeta);
|
|
12773
12768
|
return (sel, pyramidLevel) => {
|
|
12774
12769
|
const index = ifdIndexer(sel);
|
|
@@ -12786,9 +12781,7 @@ var __exports__ = (() => {
|
|
|
12786
12781
|
if (pyramidLevel === 0) {
|
|
12787
12782
|
return baseImage;
|
|
12788
12783
|
}
|
|
12789
|
-
const {
|
|
12790
|
-
SubIFDs
|
|
12791
|
-
} = baseImage.fileDirectory;
|
|
12784
|
+
const { SubIFDs } = baseImage.fileDirectory;
|
|
12792
12785
|
if (!SubIFDs) {
|
|
12793
12786
|
throw Error("Indexing Error: OME-TIFF is missing SubIFDs.");
|
|
12794
12787
|
}
|
|
@@ -12798,58 +12791,37 @@ var __exports__ = (() => {
|
|
|
12798
12791
|
ifdCache.set(key, tiff.parseFileDirectoryAt(subIfdOffset));
|
|
12799
12792
|
}
|
|
12800
12793
|
const ifd = await ifdCache.get(key);
|
|
12801
|
-
return new baseImage.constructor(
|
|
12794
|
+
return new baseImage.constructor(
|
|
12795
|
+
ifd.fileDirectory,
|
|
12796
|
+
ifd.geoKeyDirectory,
|
|
12797
|
+
// @ts-expect-error
|
|
12798
|
+
tiff.dataView,
|
|
12799
|
+
tiff.littleEndian,
|
|
12800
|
+
tiff.cache,
|
|
12801
|
+
tiff.source
|
|
12802
|
+
);
|
|
12802
12803
|
};
|
|
12803
12804
|
}
|
|
12804
12805
|
function getOmeIFDIndexer(imgMeta) {
|
|
12805
|
-
const {
|
|
12806
|
-
SizeC,
|
|
12807
|
-
SizeZ,
|
|
12808
|
-
SizeT,
|
|
12809
|
-
DimensionOrder
|
|
12810
|
-
} = imgMeta.Pixels;
|
|
12806
|
+
const { SizeC, SizeZ, SizeT, DimensionOrder } = imgMeta.Pixels;
|
|
12811
12807
|
switch (DimensionOrder) {
|
|
12812
12808
|
case "XYZCT": {
|
|
12813
|
-
return ({
|
|
12814
|
-
t,
|
|
12815
|
-
c,
|
|
12816
|
-
z
|
|
12817
|
-
}) => t * SizeZ * SizeC + c * SizeZ + z;
|
|
12809
|
+
return ({ t, c, z }) => t * SizeZ * SizeC + c * SizeZ + z;
|
|
12818
12810
|
}
|
|
12819
12811
|
case "XYZTC": {
|
|
12820
|
-
return ({
|
|
12821
|
-
t,
|
|
12822
|
-
c,
|
|
12823
|
-
z
|
|
12824
|
-
}) => c * SizeZ * SizeT + t * SizeZ + z;
|
|
12812
|
+
return ({ t, c, z }) => c * SizeZ * SizeT + t * SizeZ + z;
|
|
12825
12813
|
}
|
|
12826
12814
|
case "XYCTZ": {
|
|
12827
|
-
return ({
|
|
12828
|
-
t,
|
|
12829
|
-
c,
|
|
12830
|
-
z
|
|
12831
|
-
}) => z * SizeC * SizeT + t * SizeC + c;
|
|
12815
|
+
return ({ t, c, z }) => z * SizeC * SizeT + t * SizeC + c;
|
|
12832
12816
|
}
|
|
12833
12817
|
case "XYCZT": {
|
|
12834
|
-
return ({
|
|
12835
|
-
t,
|
|
12836
|
-
c,
|
|
12837
|
-
z
|
|
12838
|
-
}) => t * SizeC * SizeZ + z * SizeC + c;
|
|
12818
|
+
return ({ t, c, z }) => t * SizeC * SizeZ + z * SizeC + c;
|
|
12839
12819
|
}
|
|
12840
12820
|
case "XYTCZ": {
|
|
12841
|
-
return ({
|
|
12842
|
-
t,
|
|
12843
|
-
c,
|
|
12844
|
-
z
|
|
12845
|
-
}) => z * SizeT * SizeC + c * SizeT + t;
|
|
12821
|
+
return ({ t, c, z }) => z * SizeT * SizeC + c * SizeT + t;
|
|
12846
12822
|
}
|
|
12847
12823
|
case "XYTZC": {
|
|
12848
|
-
return ({
|
|
12849
|
-
t,
|
|
12850
|
-
c,
|
|
12851
|
-
z
|
|
12852
|
-
}) => c * SizeT * SizeZ + z * SizeT + t;
|
|
12824
|
+
return ({ t, c, z }) => c * SizeT * SizeZ + z * SizeT + t;
|
|
12853
12825
|
}
|
|
12854
12826
|
default: {
|
|
12855
12827
|
throw new Error(`Invalid OME-XML DimensionOrder, got ${DimensionOrder}.`);
|
|
@@ -12886,9 +12858,7 @@ var __exports__ = (() => {
|
|
|
12886
12858
|
int16: "Int16",
|
|
12887
12859
|
int32: "Int32"
|
|
12888
12860
|
};
|
|
12889
|
-
function getOmePixelSourceMeta({
|
|
12890
|
-
Pixels
|
|
12891
|
-
}) {
|
|
12861
|
+
function getOmePixelSourceMeta({ Pixels }) {
|
|
12892
12862
|
const labels = getLabels(Pixels.DimensionOrder);
|
|
12893
12863
|
const dims = getDims(labels);
|
|
12894
12864
|
const shape = Array(labels.length).fill(0);
|
|
@@ -12926,27 +12896,21 @@ var __exports__ = (() => {
|
|
|
12926
12896
|
unit: Pixels.PhysicalSizeZUnit
|
|
12927
12897
|
};
|
|
12928
12898
|
}
|
|
12929
|
-
return {
|
|
12930
|
-
labels,
|
|
12931
|
-
getShape,
|
|
12932
|
-
physicalSizes,
|
|
12933
|
-
dtype
|
|
12934
|
-
};
|
|
12899
|
+
return { labels, getShape, physicalSizes, dtype };
|
|
12935
12900
|
}
|
|
12936
|
-
return {
|
|
12937
|
-
labels,
|
|
12938
|
-
getShape,
|
|
12939
|
-
dtype
|
|
12940
|
-
};
|
|
12901
|
+
return { labels, getShape, dtype };
|
|
12941
12902
|
}
|
|
12942
12903
|
|
|
12943
12904
|
// src/lib/ome/omexml.ts
|
|
12944
12905
|
var import_fast_xml_parser = __toESM(require_fxp(), 1);
|
|
12945
12906
|
var xmlParser = new import_fast_xml_parser.XMLParser({
|
|
12907
|
+
// Nests attributes withtout prefix under 'attr' key for each node
|
|
12946
12908
|
attributeNamePrefix: "",
|
|
12947
12909
|
attributesGroupName: "attr",
|
|
12910
|
+
// Parses numbers for both attributes and nodes
|
|
12948
12911
|
parseTagValue: true,
|
|
12949
12912
|
parseAttributeValue: true,
|
|
12913
|
+
// Forces attributes to be parsed
|
|
12950
12914
|
ignoreAttributes: false
|
|
12951
12915
|
});
|
|
12952
12916
|
var parse = (str) => xmlParser.parse(str);
|
|
@@ -12958,19 +12922,11 @@ var __exports__ = (() => {
|
|
|
12958
12922
|
return ensureArray(res.OME.Image).map((img) => {
|
|
12959
12923
|
const Channels = ensureArray(img.Pixels.Channel).map((c) => {
|
|
12960
12924
|
if ("Color" in c.attr) {
|
|
12961
|
-
return {
|
|
12962
|
-
...c.attr,
|
|
12963
|
-
Color: intToRgba(c.attr.Color)
|
|
12964
|
-
};
|
|
12925
|
+
return { ...c.attr, Color: intToRgba(c.attr.Color) };
|
|
12965
12926
|
}
|
|
12966
|
-
return {
|
|
12967
|
-
...c.attr
|
|
12968
|
-
};
|
|
12927
|
+
return { ...c.attr };
|
|
12969
12928
|
});
|
|
12970
|
-
const {
|
|
12971
|
-
AquisitionDate = "",
|
|
12972
|
-
Description = ""
|
|
12973
|
-
} = img;
|
|
12929
|
+
const { AquisitionDate = "", Description = "" } = img;
|
|
12974
12930
|
const image = {
|
|
12975
12931
|
...img.attr,
|
|
12976
12932
|
AquisitionDate,
|
|
@@ -12983,9 +12939,7 @@ var __exports__ = (() => {
|
|
|
12983
12939
|
return {
|
|
12984
12940
|
...image,
|
|
12985
12941
|
format() {
|
|
12986
|
-
const {
|
|
12987
|
-
Pixels
|
|
12988
|
-
} = image;
|
|
12942
|
+
const { Pixels } = image;
|
|
12989
12943
|
const sizes = ["X", "Y", "Z"].map((name) => {
|
|
12990
12944
|
const size = Pixels[`PhysicalSize${name}`];
|
|
12991
12945
|
const unit = Pixels[`PhysicalSize${name}Unit`];
|
|
@@ -13023,37 +12977,21 @@ var __exports__ = (() => {
|
|
|
13023
12977
|
pyramidIndexer = getOmeLegacyIndexer(tiff, omexml);
|
|
13024
12978
|
}
|
|
13025
12979
|
const imgMeta = omexml[0];
|
|
13026
|
-
const {
|
|
13027
|
-
labels,
|
|
13028
|
-
getShape,
|
|
13029
|
-
physicalSizes,
|
|
13030
|
-
dtype
|
|
13031
|
-
} = getOmePixelSourceMeta(imgMeta);
|
|
12980
|
+
const { labels, getShape, physicalSizes, dtype } = getOmePixelSourceMeta(imgMeta);
|
|
13032
12981
|
const tileSize = firstImage.getTileWidth();
|
|
13033
|
-
const meta = {
|
|
13034
|
-
|
|
13035
|
-
physicalSizes
|
|
13036
|
-
};
|
|
13037
|
-
const data = Array.from({
|
|
13038
|
-
length: levels
|
|
13039
|
-
}).map((_, resolution) => {
|
|
12982
|
+
const meta = { photometricInterpretation, physicalSizes };
|
|
12983
|
+
const data = Array.from({ length: levels }).map((_, resolution) => {
|
|
13040
12984
|
const shape = getShape(resolution);
|
|
13041
12985
|
const indexer = (sel) => pyramidIndexer(sel, resolution);
|
|
13042
12986
|
const source = new TiffPixelSource(indexer, dtype, tileSize, shape, labels, meta);
|
|
13043
12987
|
return source;
|
|
13044
12988
|
});
|
|
13045
|
-
return {
|
|
13046
|
-
data,
|
|
13047
|
-
metadata: imgMeta
|
|
13048
|
-
};
|
|
12989
|
+
return { data, metadata: imgMeta };
|
|
13049
12990
|
}
|
|
13050
12991
|
|
|
13051
12992
|
// src/lib/load-geotiff.ts
|
|
13052
12993
|
async function loadGeoTiff(source, opts = {}) {
|
|
13053
|
-
const {
|
|
13054
|
-
headers,
|
|
13055
|
-
offsets
|
|
13056
|
-
} = opts;
|
|
12994
|
+
const { headers, offsets } = opts;
|
|
13057
12995
|
let tiff;
|
|
13058
12996
|
if (source instanceof GeoTIFF) {
|
|
13059
12997
|
tiff = source;
|
|
@@ -13070,7 +13008,7 @@ var __exports__ = (() => {
|
|
|
13070
13008
|
}
|
|
13071
13009
|
throw new Error("GeoTIFF not recognized.");
|
|
13072
13010
|
}
|
|
13073
|
-
return __toCommonJS(
|
|
13011
|
+
return __toCommonJS(bundle_exports);
|
|
13074
13012
|
})();
|
|
13075
13013
|
/*! Bundled license information:
|
|
13076
13014
|
|