@loaders.gl/geotiff 4.1.0-alpha.1 → 4.1.0-alpha.11
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/dist.dev.js +1257 -1073
- package/dist/geotiff-loader.d.ts +21 -0
- package/dist/geotiff-loader.d.ts.map +1 -0
- package/dist/geotiff-loader.js +59 -0
- package/dist/geotiff-loader.js.map +1 -0
- package/dist/index.cjs +46 -40
- package/dist/index.d.ts +2 -1
- package/dist/index.d.ts.map +1 -1
- package/dist/index.js +2 -1
- package/dist/index.js.map +1 -1
- package/dist/lib/load-geotiff.d.ts +1 -1
- package/dist/lib/load-geotiff.d.ts.map +1 -1
- package/dist/lib/load-geotiff.js +1 -5
- package/dist/lib/load-geotiff.js.map +1 -1
- package/dist/lib/ome/load-ome-tiff.d.ts +1 -1
- package/dist/lib/ome/load-ome-tiff.d.ts.map +1 -1
- package/dist/lib/ome/load-ome-tiff.js +1 -1
- package/dist/lib/ome/load-ome-tiff.js.map +1 -1
- package/dist/lib/ome/ome-indexers.d.ts +1 -0
- package/dist/lib/ome/ome-indexers.d.ts.map +1 -1
- package/dist/lib/ome/ome-indexers.js.map +1 -1
- package/dist/lib/ome/ome-utils.d.ts.map +1 -1
- package/dist/lib/ome/ome-utils.js.map +1 -1
- package/dist/lib/ome/omexml.d.ts.map +1 -1
- package/dist/lib/ome/omexml.js.map +1 -1
- package/dist/lib/ome/utils.d.ts.map +1 -1
- package/dist/lib/ome/utils.js.map +1 -1
- package/dist/lib/tiff-pixel-source.d.ts +1 -2
- package/dist/lib/tiff-pixel-source.d.ts.map +1 -1
- package/dist/lib/tiff-pixel-source.js +1 -2
- package/dist/lib/tiff-pixel-source.js.map +1 -1
- package/{src/lib/utils/Pool.ts → dist/lib/utils/Pool.ts.disabled} +3 -2
- package/{src/lib/utils/proxies.ts → dist/lib/utils/proxies.ts.disabled} +2 -1
- package/dist/lib/utils/tiff-utils.d.ts.map +1 -1
- package/dist/lib/utils/tiff-utils.js.map +1 -1
- package/dist/loaders.d.ts +13 -0
- package/dist/loaders.d.ts.map +1 -0
- package/dist/loaders.js +32 -0
- package/dist/loaders.js.map +1 -0
- package/dist/types.d.ts.map +1 -1
- package/dist/types.js.map +1 -1
- package/package.json +5 -5
- package/src/geotiff-loader.ts +115 -0
- package/src/index.ts +5 -2
- package/src/lib/load-geotiff.ts +10 -9
- package/src/lib/ome/load-ome-tiff.ts +3 -2
- package/src/lib/ome/ome-indexers.ts +7 -3
- package/src/lib/ome/ome-utils.ts +2 -1
- package/src/lib/ome/omexml.ts +2 -1
- package/src/lib/ome/utils.ts +2 -1
- package/src/lib/tiff-pixel-source.ts +7 -6
- package/src/lib/utils/Pool.ts.disabled +99 -0
- package/src/lib/utils/proxies.ts.disabled +96 -0
- package/src/lib/utils/tiff-utils.ts +2 -1
- package/src/loaders.ts +68 -0
- package/src/types.ts +2 -1
- package/dist/lib/utils/Pool.d.ts +0 -29
- package/dist/lib/utils/Pool.d.ts.map +0 -1
- package/dist/lib/utils/Pool.js +0 -60
- package/dist/lib/utils/Pool.js.map +0 -1
- package/dist/lib/utils/proxies.d.ts +0 -6
- package/dist/lib/utils/proxies.d.ts.map +0 -1
- package/dist/lib/utils/proxies.js +0 -54
- package/dist/lib/utils/proxies.js.map +0 -1
- package/dist/typings/geotiff.d.ts +0 -60
- package/dist/typings/geotiff.d.ts.map +0 -1
- package/dist/typings/geotiff.js +0 -2
- package/dist/typings/geotiff.js.map +0 -1
- package/src/typings/geotiff.ts +0 -75
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// loaders.gl
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// loaders.gl
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// SPDX-License-Identifier: MIT
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// Copyright (c) vis.gl contributors
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/** eslint-disable */
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import
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import {FileDirectory} from 'geotiff';
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// import Worker from 'web-worker:./decoder.worker.ts';
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{"version":3,"file":"tiff-utils.d.ts","sourceRoot":"","sources":["../../../src/lib/utils/tiff-utils.ts"],"names":[],"mappings":"
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{"version":3,"file":"tiff-utils.d.ts","sourceRoot":"","sources":["../../../src/lib/utils/tiff-utils.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAC,WAAW,EAAC,MAAM,aAAa,CAAC;AAE7C,wBAAgB,WAAW,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,OAExC;AASD,wBAAgB,SAAS,CAAC,GAAG,EAAE,MAAM,oCAapC;AAOD,wBAAgB,aAAa,CAAC,KAAK,EAAE,MAAM,EAAE,WAG5C;AAED,wBAAgB,YAAY,CAAC,CAAC,SAAS,MAAM,EAAE,EAAE,MAAM,EAAE,WAAW,CAAC,CAAC,CAAC;;;EAItE;AAED,eAAO,MAAM,cAAc,uBAAuB,CAAC"}
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{"version":3,"file":"tiff-utils.js","names":["ensureArray","x","Array","isArray","intToRgba","int","Number","isInteger","Error","buffer","ArrayBuffer","view","DataView","setInt32","bytes","Uint8Array","from","isInterleaved","shape","lastDimSize","length","getImageSize","source","interleaved","height","width","slice","SIGNAL_ABORTED"],"sources":["../../../src/lib/utils/tiff-utils.ts"],"sourcesContent":["// loaders.gl
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{"version":3,"file":"tiff-utils.js","names":["ensureArray","x","Array","isArray","intToRgba","int","Number","isInteger","Error","buffer","ArrayBuffer","view","DataView","setInt32","bytes","Uint8Array","from","isInterleaved","shape","lastDimSize","length","getImageSize","source","interleaved","height","width","slice","SIGNAL_ABORTED"],"sources":["../../../src/lib/utils/tiff-utils.ts"],"sourcesContent":["// loaders.gl\n// SPDX-License-Identifier: MIT\n// Copyright (c) vis.gl contributors\n\nimport type {PixelSource} from '../../types';\n\nexport function ensureArray<T>(x: T | T[]) {\n return Array.isArray(x) ? x : [x];\n}\n\n/*\n * Converts 32-bit integer color representation to RGBA tuple.\n * Used to serialize colors from OME-XML metadata.\n *\n * > console.log(intToRgba(100100));\n * > // [0, 1, 135, 4]\n */\nexport function intToRgba(int: number) {\n if (!Number.isInteger(int)) {\n throw Error('Not an integer.');\n }\n\n // Write number to int32 representation (4 bytes).\n const buffer = new ArrayBuffer(4);\n const view = new DataView(buffer);\n view.setInt32(0, int, false); // offset === 0, littleEndian === false\n\n // Take u8 view and extract number for each byte (1 byte for R/G/B/A).\n const bytes = new Uint8Array(buffer);\n return Array.from(bytes) as [number, number, number, number];\n}\n\n/*\n * Helper method to determine whether pixel data is interleaved or not.\n * > isInterleaved([1, 24, 24]) === false;\n * > isInterleaved([1, 24, 24, 3]) === true;\n */\nexport function isInterleaved(shape: number[]) {\n const lastDimSize = shape[shape.length - 1];\n return lastDimSize === 3 || lastDimSize === 4;\n}\n\nexport function getImageSize<T extends string[]>(source: PixelSource<T>) {\n const interleaved = isInterleaved(source.shape);\n const [height, width] = source.shape.slice(interleaved ? -3 : -2);\n return {height, width};\n}\n\nexport const SIGNAL_ABORTED = '__vivSignalAborted';\n"],"mappings":"AAMA,OAAO,SAASA,WAAWA,CAAIC,CAAU,EAAE;EACzC,OAAOC,KAAK,CAACC,OAAO,CAACF,CAAC,CAAC,GAAGA,CAAC,GAAG,CAACA,CAAC,CAAC;AACnC;AASA,OAAO,SAASG,SAASA,CAACC,GAAW,EAAE;EACrC,IAAI,CAACC,MAAM,CAACC,SAAS,CAACF,GAAG,CAAC,EAAE;IAC1B,MAAMG,KAAK,CAAC,iBAAiB,CAAC;EAChC;EAGA,MAAMC,MAAM,GAAG,IAAIC,WAAW,CAAC,CAAC,CAAC;EACjC,MAAMC,IAAI,GAAG,IAAIC,QAAQ,CAACH,MAAM,CAAC;EACjCE,IAAI,CAACE,QAAQ,CAAC,CAAC,EAAER,GAAG,EAAE,KAAK,CAAC;EAG5B,MAAMS,KAAK,GAAG,IAAIC,UAAU,CAACN,MAAM,CAAC;EACpC,OAAOP,KAAK,CAACc,IAAI,CAACF,KAAK,CAAC;AAC1B;AAOA,OAAO,SAASG,aAAaA,CAACC,KAAe,EAAE;EAC7C,MAAMC,WAAW,GAAGD,KAAK,CAACA,KAAK,CAACE,MAAM,GAAG,CAAC,CAAC;EAC3C,OAAOD,WAAW,KAAK,CAAC,IAAIA,WAAW,KAAK,CAAC;AAC/C;AAEA,OAAO,SAASE,YAAYA,CAAqBC,MAAsB,EAAE;EACvE,MAAMC,WAAW,GAAGN,aAAa,CAACK,MAAM,CAACJ,KAAK,CAAC;EAC/C,MAAM,CAACM,MAAM,EAAEC,KAAK,CAAC,GAAGH,MAAM,CAACJ,KAAK,CAACQ,KAAK,CAACH,WAAW,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;EACjE,OAAO;IAACC,MAAM;IAAEC;EAAK,CAAC;AACxB;AAEA,OAAO,MAAME,cAAc,GAAG,oBAAoB"}
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import type { LoaderWithParser, LoaderOptions } from '@loaders.gl/loader-utils';
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type GeoTiffData = {
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bounds: number[];
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width: number;
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height: number;
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imageData: ImageData;
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};
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interface GeoTiffLoaderOptions extends LoaderOptions {
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enableAlpha: boolean;
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}
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export declare const GeoTiffLoader: LoaderWithParser<GeoTiffData, never, GeoTiffLoaderOptions>;
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export {};
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//# sourceMappingURL=loaders.d.ts.map
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{"version":3,"file":"loaders.d.ts","sourceRoot":"","sources":["../src/loaders.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAC,gBAAgB,EAAE,aAAa,EAAC,MAAM,0BAA0B,CAAC;AAO9E,KAAK,WAAW,GAAG;IACjB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,SAAS,CAAC;CACtB,CAAC;AAEF,UAAU,oBAAqB,SAAQ,aAAa;IAClD,WAAW,EAAE,OAAO,CAAC;CACtB;AAuCD,eAAO,MAAM,aAAa,EAAE,gBAAgB,CAAC,WAAW,EAAE,KAAK,EAAE,oBAAoB,CAWpF,CAAC"}
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package/dist/loaders.js
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import { fromArrayBuffer } from 'geotiff';
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const VERSION = typeof "4.1.0-alpha.11" !== 'undefined' ? "4.1.0-alpha.11" : 'latest';
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const loadGeoTiff = async (data, options) => {
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const tiff = await fromArrayBuffer(data);
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const image = await tiff.getImage();
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const rgbData = await image.readRGB({
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enableAlpha: options === null || options === void 0 ? void 0 : options.enableAlpha
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});
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const width = image.getWidth();
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const height = image.getHeight();
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const imageData = new ImageData(width, height);
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imageData.data.set(new Uint8ClampedArray(rgbData));
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return {
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bounds: [],
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imageData,
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width,
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height
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};
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};
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export const GeoTiffLoader = {
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id: 'geotiff',
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name: 'GeoTIFF',
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module: 'geotiff',
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version: VERSION,
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options: {
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enableAlpha: true
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},
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mimeTypes: ['image/tiff', 'image/geotiff'],
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extensions: ['geotiff', 'tiff', 'geotif', 'tif'],
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parse: loadGeoTiff
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};
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//# sourceMappingURL=loaders.js.map
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{"version":3,"file":"loaders.js","names":["fromArrayBuffer","VERSION","loadGeoTiff","data","options","tiff","image","getImage","rgbData","readRGB","enableAlpha","width","getWidth","height","getHeight","imageData","ImageData","set","Uint8ClampedArray","bounds","GeoTiffLoader","id","name","module","version","mimeTypes","extensions","parse"],"sources":["../src/loaders.ts"],"sourcesContent":["import {fromArrayBuffer} from 'geotiff';\nimport type {LoaderWithParser, LoaderOptions} from '@loaders.gl/loader-utils';\n\n// __VERSION__ is injected by babel-plugin-version-inline\n// @ts-ignore TS2304: Cannot find name '__VERSION__'.\nconst VERSION = typeof __VERSION__ !== 'undefined' ? __VERSION__ : 'latest';\n\n// Type definitions\ntype GeoTiffData = {\n bounds: number[];\n width: number;\n height: number;\n imageData: ImageData;\n};\n\ninterface GeoTiffLoaderOptions extends LoaderOptions {\n enableAlpha: boolean;\n}\n\n/**\n * Loads a GeoTIFF file containing a RGB image.\n */\nconst loadGeoTiff = async (\n data: ArrayBuffer,\n options?: GeoTiffLoaderOptions\n): Promise<GeoTiffData> => {\n // Load using Geotiff.js\n const tiff = await fromArrayBuffer(data);\n\n // Assumes we only have one image inside TIFF\n const image = await tiff.getImage();\n\n // Read image and size\n // TODO: Add support for worker pools here.\n // TODO: Add support for more image formats.\n const rgbData = await image.readRGB({\n enableAlpha: options?.enableAlpha\n });\n const width = image.getWidth();\n const height = image.getHeight();\n\n // Create a new ImageData object\n const imageData = new ImageData(width, height);\n imageData.data.set(new Uint8ClampedArray(rgbData as unknown as Uint8Array));\n\n // Return GeoJSON data\n return {\n // TODO: Add bounds here\n bounds: [],\n imageData,\n width,\n height\n };\n};\n\n// Export loader\nexport const GeoTiffLoader: LoaderWithParser<GeoTiffData, never, GeoTiffLoaderOptions> = {\n id: 'geotiff',\n name: 'GeoTIFF',\n module: 'geotiff',\n version: VERSION,\n options: {\n enableAlpha: true\n },\n mimeTypes: ['image/tiff', 'image/geotiff'],\n extensions: ['geotiff', 'tiff', 'geotif', 'tif'],\n parse: loadGeoTiff\n};\n"],"mappings":"AAAA,SAAQA,eAAe,QAAO,SAAS;AAKvC,MAAMC,OAAO,GAAG,uBAAkB,KAAK,WAAW,sBAAiB,QAAQ;AAiB3E,MAAMC,WAAW,GAAG,MAAAA,CAClBC,IAAiB,EACjBC,OAA8B,KACL;EAEzB,MAAMC,IAAI,GAAG,MAAML,eAAe,CAACG,IAAI,CAAC;EAGxC,MAAMG,KAAK,GAAG,MAAMD,IAAI,CAACE,QAAQ,CAAC,CAAC;EAKnC,MAAMC,OAAO,GAAG,MAAMF,KAAK,CAACG,OAAO,CAAC;IAClCC,WAAW,EAAEN,OAAO,aAAPA,OAAO,uBAAPA,OAAO,CAAEM;EACxB,CAAC,CAAC;EACF,MAAMC,KAAK,GAAGL,KAAK,CAACM,QAAQ,CAAC,CAAC;EAC9B,MAAMC,MAAM,GAAGP,KAAK,CAACQ,SAAS,CAAC,CAAC;EAGhC,MAAMC,SAAS,GAAG,IAAIC,SAAS,CAACL,KAAK,EAAEE,MAAM,CAAC;EAC9CE,SAAS,CAACZ,IAAI,CAACc,GAAG,CAAC,IAAIC,iBAAiB,CAACV,OAAgC,CAAC,CAAC;EAG3E,OAAO;IAELW,MAAM,EAAE,EAAE;IACVJ,SAAS;IACTJ,KAAK;IACLE;EACF,CAAC;AACH,CAAC;AAGD,OAAO,MAAMO,aAAyE,GAAG;EACvFC,EAAE,EAAE,SAAS;EACbC,IAAI,EAAE,SAAS;EACfC,MAAM,EAAE,SAAS;EACjBC,OAAO,EAAEvB,OAAO;EAChBG,OAAO,EAAE;IACPM,WAAW,EAAE;EACf,CAAC;EACDe,SAAS,EAAE,CAAC,YAAY,EAAE,eAAe,CAAC;EAC1CC,UAAU,EAAE,CAAC,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,KAAK,CAAC;EAChDC,KAAK,EAAEzB;AACT,CAAC"}
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package/dist/types.d.ts.map
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package/dist/types.js.map
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{"version":3,"file":"types.js","names":[],"sources":["../src/types.ts"],"sourcesContent":["// loaders.gl
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{"version":3,"file":"types.js","names":[],"sources":["../src/types.ts"],"sourcesContent":["// loaders.gl\n// SPDX-License-Identifier: MIT\n// Copyright (c) vis.gl contributors\n\nimport {DTYPE_LOOKUP} from './lib/ome/ome-utils';\n\nexport type Dtype = (typeof DTYPE_LOOKUP)[keyof typeof DTYPE_LOOKUP];\nexport type TypedArray = InstanceType<(typeof globalThis)[`${Dtype}Array`]>;\n\nexport interface PixelData {\n data: TypedArray;\n width: number;\n height: number;\n}\n\nexport type PixelSourceSelection<S extends string[]> = {\n [K in S[number]]: number;\n};\n\nexport interface RasterSelection<S extends string[]> {\n selection: PixelSourceSelection<S>;\n signal?: AbortSignal;\n}\n\nexport interface TileSelection<S extends string[]> {\n x: number;\n y: number;\n selection: PixelSourceSelection<S>;\n signal?: AbortSignal;\n}\n\ninterface PhysicalSize {\n size: number;\n unit: string;\n}\n\nexport interface PixelSourceMeta {\n physicalSizes?: Record<string, PhysicalSize>;\n photometricInterpretation?: number;\n}\n\nexport type Labels<S extends string[]> = [...S, 'y', 'x'] | [...S, 'y', 'x', '_c'];\n\n/**\n * Interface to load tiles from a data source\n */\nexport interface PixelSource<S extends string[]> {\n /** Loads a 2D plane */\n getRaster(sel: RasterSelection<S>): Promise<PixelData>;\n /** Loads a tile */\n getTile(sel: TileSelection<S>): Promise<PixelData>;\n onTileError(err: Error): void;\n shape: number[];\n dtype: Dtype;\n labels: Labels<S>;\n tileSize: number;\n meta?: PixelSourceMeta;\n}\n"],"mappings":""}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@loaders.gl/geotiff",
|
|
3
|
-
"version": "4.1.0-alpha.
|
|
3
|
+
"version": "4.1.0-alpha.11",
|
|
4
4
|
"description": "Framework-independent loaders for tiff and geotiff",
|
|
5
5
|
"license": "MIT",
|
|
6
6
|
"type": "module",
|
|
@@ -25,9 +25,9 @@
|
|
|
25
25
|
"module": "dist/index.js",
|
|
26
26
|
"exports": {
|
|
27
27
|
".": {
|
|
28
|
+
"types": "./dist/index.d.ts",
|
|
28
29
|
"import": "./dist/index.js",
|
|
29
|
-
"require": "./dist/index.cjs"
|
|
30
|
-
"types": "./dist/index.d.ts"
|
|
30
|
+
"require": "./dist/index.cjs"
|
|
31
31
|
}
|
|
32
32
|
},
|
|
33
33
|
"sideEffects": false,
|
|
@@ -46,7 +46,7 @@
|
|
|
46
46
|
},
|
|
47
47
|
"dependencies": {
|
|
48
48
|
"fast-xml-parser": "^4.2.5",
|
|
49
|
-
"geotiff": "^1.0
|
|
49
|
+
"geotiff": "^2.1.0"
|
|
50
50
|
},
|
|
51
|
-
"gitHead": "
|
|
51
|
+
"gitHead": "5d3e23bf93762b48c8c1d6d926ede7a97fe43ab0"
|
|
52
52
|
}
|
|
@@ -0,0 +1,115 @@
|
|
|
1
|
+
// loaders.gl
|
|
2
|
+
// SPDX-License-Identifier: MIT
|
|
3
|
+
// Copyright (c) vis.gl contributors
|
|
4
|
+
|
|
5
|
+
import type {TypedArray} from '@loaders.gl/loader-utils';
|
|
6
|
+
import type {LoaderWithParser, LoaderOptions} from '@loaders.gl/loader-utils';
|
|
7
|
+
import {fromArrayBuffer} from 'geotiff';
|
|
8
|
+
|
|
9
|
+
// __VERSION__ is injected by babel-plugin-version-inline
|
|
10
|
+
// @ts-ignore TS2304: Cannot find name '__VERSION__'.
|
|
11
|
+
const VERSION = typeof __VERSION__ !== 'undefined' ? __VERSION__ : 'latest';
|
|
12
|
+
|
|
13
|
+
// Return type definition for GeoTIFF loader
|
|
14
|
+
type GeoTIFFData = {
|
|
15
|
+
crs?: string;
|
|
16
|
+
bounds: number[];
|
|
17
|
+
metadata: Record<string, unknown>;
|
|
18
|
+
|
|
19
|
+
width: number;
|
|
20
|
+
height: number;
|
|
21
|
+
data: TypedArray;
|
|
22
|
+
};
|
|
23
|
+
|
|
24
|
+
/** GeoTIFF load options */
|
|
25
|
+
export type GeoTIFFLoaderOptions = LoaderOptions & {
|
|
26
|
+
geotiff?: {
|
|
27
|
+
enableAlpha: boolean;
|
|
28
|
+
};
|
|
29
|
+
};
|
|
30
|
+
|
|
31
|
+
/** GeoTIFF loader */
|
|
32
|
+
export const GeoTIFFLoader: LoaderWithParser<GeoTIFFData, never, GeoTIFFLoaderOptions> = {
|
|
33
|
+
id: 'geotiff',
|
|
34
|
+
name: 'GeoTIFF',
|
|
35
|
+
module: 'geotiff',
|
|
36
|
+
version: VERSION,
|
|
37
|
+
options: {
|
|
38
|
+
enableAlpha: true
|
|
39
|
+
},
|
|
40
|
+
mimeTypes: ['image/tiff', 'image/geotiff'],
|
|
41
|
+
extensions: ['geotiff', 'tiff', 'geotif', 'tif'],
|
|
42
|
+
parse: parseGeoTIFF
|
|
43
|
+
};
|
|
44
|
+
|
|
45
|
+
export function isTiff(arrayBuffer: ArrayBuffer): boolean {
|
|
46
|
+
const dataView = new DataView(arrayBuffer);
|
|
47
|
+
// Byte offset
|
|
48
|
+
const endianness = dataView.getUint16(0);
|
|
49
|
+
let littleEndian: boolean;
|
|
50
|
+
switch (endianness) {
|
|
51
|
+
case 0x4949:
|
|
52
|
+
littleEndian = true;
|
|
53
|
+
break;
|
|
54
|
+
case 0x4d4d:
|
|
55
|
+
littleEndian = false;
|
|
56
|
+
break;
|
|
57
|
+
default:
|
|
58
|
+
return false;
|
|
59
|
+
// throw new Error(`invalid byte order: 0x${endianness.toString(16)}`);
|
|
60
|
+
}
|
|
61
|
+
|
|
62
|
+
// Magic number
|
|
63
|
+
if (dataView.getUint16(2, littleEndian) !== 42) {
|
|
64
|
+
return false;
|
|
65
|
+
}
|
|
66
|
+
|
|
67
|
+
return true;
|
|
68
|
+
}
|
|
69
|
+
|
|
70
|
+
/**
|
|
71
|
+
* Loads a GeoTIFF file containing a RGB image.
|
|
72
|
+
*/
|
|
73
|
+
async function parseGeoTIFF(
|
|
74
|
+
data: ArrayBuffer,
|
|
75
|
+
options?: GeoTIFFLoaderOptions
|
|
76
|
+
): Promise<GeoTIFFData> {
|
|
77
|
+
// Load using Geotiff.js
|
|
78
|
+
const tiff = await fromArrayBuffer(data);
|
|
79
|
+
|
|
80
|
+
// Assumes we only have one image inside TIFF
|
|
81
|
+
const image = await tiff.getImage();
|
|
82
|
+
|
|
83
|
+
// Read image and size
|
|
84
|
+
// TODO: Add support for worker pools here.
|
|
85
|
+
// TODO: Add support for more image formats.
|
|
86
|
+
const rgbData = await image.readRGB({
|
|
87
|
+
enableAlpha: options?.geotiff?.enableAlpha
|
|
88
|
+
});
|
|
89
|
+
|
|
90
|
+
const width = image.getWidth();
|
|
91
|
+
const height = image.getHeight();
|
|
92
|
+
|
|
93
|
+
// Create a new ImageData object
|
|
94
|
+
const imageData = new Uint8ClampedArray(rgbData as unknown as Uint8Array);
|
|
95
|
+
|
|
96
|
+
// Get geo data
|
|
97
|
+
const bounds = image.getBoundingBox();
|
|
98
|
+
const metadata = image.getGeoKeys();
|
|
99
|
+
|
|
100
|
+
// ProjectedCSTypeGeoKey is the only key we support for now, we assume it is an EPSG code
|
|
101
|
+
let crs: string | undefined;
|
|
102
|
+
if (metadata?.ProjectedCSTypeGeoKey) {
|
|
103
|
+
crs = `EPSG:${metadata.ProjectedCSTypeGeoKey}`;
|
|
104
|
+
}
|
|
105
|
+
|
|
106
|
+
// Return GeoReferenced image data
|
|
107
|
+
return {
|
|
108
|
+
crs,
|
|
109
|
+
bounds,
|
|
110
|
+
width,
|
|
111
|
+
height,
|
|
112
|
+
data: imageData,
|
|
113
|
+
metadata
|
|
114
|
+
};
|
|
115
|
+
}
|
package/src/index.ts
CHANGED
|
@@ -1,5 +1,8 @@
|
|
|
1
|
-
// loaders.gl
|
|
1
|
+
// loaders.gl
|
|
2
|
+
// SPDX-License-Identifier: MIT
|
|
2
3
|
// Copyright (c) vis.gl contributors
|
|
3
4
|
|
|
5
|
+
export {GeoTIFFLoader} from './geotiff-loader';
|
|
6
|
+
|
|
4
7
|
export {loadGeoTiff} from './lib/load-geotiff';
|
|
5
|
-
export {
|
|
8
|
+
export {TiffPixelSource} from './lib/tiff-pixel-source';
|
package/src/lib/load-geotiff.ts
CHANGED
|
@@ -1,17 +1,18 @@
|
|
|
1
|
-
// loaders.gl
|
|
1
|
+
// loaders.gl
|
|
2
|
+
// SPDX-License-Identifier: MIT
|
|
2
3
|
// Copyright (c) vis.gl contributors
|
|
3
4
|
|
|
4
5
|
import {fromUrl, fromBlob, GeoTIFF} from 'geotiff';
|
|
5
6
|
|
|
6
|
-
import {
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
} from './utils/proxies';
|
|
7
|
+
// import {
|
|
8
|
+
// // createPoolProxy,
|
|
9
|
+
// createOffsetsProxy,
|
|
10
|
+
// checkProxies
|
|
11
|
+
// } from './utils/proxies.ts.disabled';
|
|
11
12
|
// import Pool from './lib/Pool';
|
|
12
13
|
|
|
13
14
|
import {loadOmeTiff, isOmeTiff} from './ome/load-ome-tiff';
|
|
14
|
-
import type TiffPixelSource from './tiff-pixel-source';
|
|
15
|
+
import type {TiffPixelSource} from './tiff-pixel-source';
|
|
15
16
|
|
|
16
17
|
/** Options for initializing a tiff pixel source. */
|
|
17
18
|
interface GeoTIFFOptions {
|
|
@@ -68,14 +69,14 @@ export async function loadGeoTiff(
|
|
|
68
69
|
* create a proxy that intercepts calls to `tiff.getImage`
|
|
69
70
|
* and injects the pre-computed offsets.
|
|
70
71
|
*/
|
|
71
|
-
tiff = createOffsetsProxy(tiff, offsets);
|
|
72
|
+
// tiff = createOffsetsProxy(tiff, offsets);
|
|
72
73
|
}
|
|
73
74
|
|
|
74
75
|
/*
|
|
75
76
|
* Inspect tiff source for our performance enhancing proxies.
|
|
76
77
|
* Prints warnings to console if `offsets` or `pool` are missing.
|
|
77
78
|
*/
|
|
78
|
-
checkProxies(tiff);
|
|
79
|
+
// checkProxies(tiff);
|
|
79
80
|
|
|
80
81
|
const firstImage = await tiff.getImage(0);
|
|
81
82
|
|
|
@@ -1,9 +1,10 @@
|
|
|
1
|
-
// loaders.gl
|
|
1
|
+
// loaders.gl
|
|
2
|
+
// SPDX-License-Identifier: MIT
|
|
2
3
|
// Copyright (c) vis.gl contributors
|
|
3
4
|
|
|
4
5
|
import type {GeoTIFF, GeoTIFFImage} from 'geotiff';
|
|
5
6
|
|
|
6
|
-
import TiffPixelSource from '../tiff-pixel-source';
|
|
7
|
+
import {TiffPixelSource} from '../tiff-pixel-source';
|
|
7
8
|
import {getOmeLegacyIndexer, getOmeSubIFDIndexer, OmeTiffIndexer} from './ome-indexers';
|
|
8
9
|
import {getOmePixelSourceMeta} from './ome-utils';
|
|
9
10
|
import {fromString} from './omexml';
|
|
@@ -1,9 +1,12 @@
|
|
|
1
|
-
// loaders.gl
|
|
1
|
+
// loaders.gl
|
|
2
|
+
// SPDX-License-Identifier: MIT
|
|
2
3
|
// Copyright (c) vis.gl contributors
|
|
3
4
|
|
|
4
|
-
import type {GeoTIFFImage, GeoTIFF
|
|
5
|
+
import type {GeoTIFFImage, GeoTIFF} from 'geotiff';
|
|
5
6
|
import type {OMEXML} from '../ome/omexml';
|
|
6
7
|
|
|
8
|
+
export type ImageFileDirectory = any;
|
|
9
|
+
|
|
7
10
|
export type OmeTiffSelection = {t: number; c: number; z: number};
|
|
8
11
|
export type OmeTiffIndexer = (sel: OmeTiffSelection, z: number) => Promise<GeoTIFFImage>;
|
|
9
12
|
|
|
@@ -81,13 +84,14 @@ export function getOmeSubIFDIndexer(tiff: GeoTIFF, rootMeta: OMEXML): OmeTiffInd
|
|
|
81
84
|
const subIfdOffset = SubIFDs[pyramidLevel - 1];
|
|
82
85
|
ifdCache.set(key, tiff.parseFileDirectoryAt(subIfdOffset));
|
|
83
86
|
}
|
|
84
|
-
const ifd =
|
|
87
|
+
const ifd = await ifdCache.get(key);
|
|
85
88
|
|
|
86
89
|
// Create a new image object manually from IFD
|
|
87
90
|
// https://github.com/geotiffjs/geotiff.js/blob/8ef472f41b51d18074aece2300b6a8ad91a21ae1/src/geotiff.js#L447-L453
|
|
88
91
|
return new (baseImage.constructor as any)(
|
|
89
92
|
ifd.fileDirectory,
|
|
90
93
|
ifd.geoKeyDirectory,
|
|
94
|
+
// @ts-expect-error
|
|
91
95
|
tiff.dataView,
|
|
92
96
|
tiff.littleEndian,
|
|
93
97
|
tiff.cache,
|
package/src/lib/ome/ome-utils.ts
CHANGED
package/src/lib/ome/omexml.ts
CHANGED
package/src/lib/ome/utils.ts
CHANGED
|
@@ -1,7 +1,8 @@
|
|
|
1
|
-
// loaders.gl
|
|
1
|
+
// loaders.gl
|
|
2
|
+
// SPDX-License-Identifier: MIT
|
|
2
3
|
// Copyright (c) vis.gl contributors
|
|
3
4
|
|
|
4
|
-
import type {GeoTIFFImage
|
|
5
|
+
import type {GeoTIFFImage} from 'geotiff';
|
|
5
6
|
import {getImageSize, isInterleaved, SIGNAL_ABORTED} from './utils/tiff-utils';
|
|
6
7
|
|
|
7
8
|
import type {
|
|
@@ -16,7 +17,9 @@ import type {
|
|
|
16
17
|
TypedArray
|
|
17
18
|
} from '../types';
|
|
18
19
|
|
|
19
|
-
|
|
20
|
+
type ReadRasterOptions = Record<string, any>;
|
|
21
|
+
|
|
22
|
+
export class TiffPixelSource<S extends string[]> implements PixelSource<S> {
|
|
20
23
|
public dtype: Dtype;
|
|
21
24
|
public tileSize: number;
|
|
22
25
|
public shape: number[];
|
|
@@ -56,7 +59,7 @@ class TiffPixelSource<S extends string[]> implements PixelSource<S> {
|
|
|
56
59
|
return this._readRasters(image, {window, width, height, signal});
|
|
57
60
|
}
|
|
58
61
|
|
|
59
|
-
private async _readRasters(image: GeoTIFFImage, props?:
|
|
62
|
+
private async _readRasters(image: GeoTIFFImage, props?: ReadRasterOptions) {
|
|
60
63
|
const interleave = isInterleaved(this.shape);
|
|
61
64
|
const raster = await image.readRasters({interleave, ...props});
|
|
62
65
|
|
|
@@ -98,5 +101,3 @@ class TiffPixelSource<S extends string[]> implements PixelSource<S> {
|
|
|
98
101
|
console.error(err); // eslint-disable-line no-console
|
|
99
102
|
}
|
|
100
103
|
}
|
|
101
|
-
|
|
102
|
-
export default TiffPixelSource;
|
|
@@ -0,0 +1,99 @@
|
|
|
1
|
+
// loaders.gl
|
|
2
|
+
// SPDX-License-Identifier: MIT
|
|
3
|
+
// Copyright (c) vis.gl contributors
|
|
4
|
+
|
|
5
|
+
/** eslint-disable */
|
|
6
|
+
import {FileDirectory} from 'geotiff';
|
|
7
|
+
|
|
8
|
+
// import Worker from 'web-worker:./decoder.worker.ts';
|
|
9
|
+
|
|
10
|
+
// https://developer.mozilla.org/en-US/docs/Web/API/NavigatorConcurrentHardware/hardwareConcurrency
|
|
11
|
+
// We need to give a different way of getting this for safari, so 4 is probably a safe bet
|
|
12
|
+
// for parallel processing in the meantime. More can't really hurt since they'll just block
|
|
13
|
+
// each other and not the UI thread, which is the real benefit.
|
|
14
|
+
const defaultPoolSize = globalThis?.navigator?.hardwareConcurrency ?? 4;
|
|
15
|
+
|
|
16
|
+
/**
|
|
17
|
+
* Pool for workers to decode chunks of the images.
|
|
18
|
+
* This is a line-for-line copy of GeoTIFFs old implementation: https://github.com/geotiffjs/geotiff.js/blob/v1.0.0-beta.8/src/pool.js
|
|
19
|
+
*/
|
|
20
|
+
export default class Pool {
|
|
21
|
+
workers: Worker[];
|
|
22
|
+
idleWorkers: Worker[];
|
|
23
|
+
waitQueue: any[];
|
|
24
|
+
decoder: null;
|
|
25
|
+
|
|
26
|
+
/**
|
|
27
|
+
* @constructor
|
|
28
|
+
* @param {Number} size The size of the pool. Defaults to the number of CPUs
|
|
29
|
+
* available. When this parameter is `null` or 0, then the
|
|
30
|
+
* decoding will be done in the main thread.
|
|
31
|
+
*/
|
|
32
|
+
constructor(size = defaultPoolSize) {
|
|
33
|
+
this.workers = [];
|
|
34
|
+
this.idleWorkers = [];
|
|
35
|
+
this.waitQueue = [];
|
|
36
|
+
this.decoder = null;
|
|
37
|
+
|
|
38
|
+
// eslint-disable-next-line no-plusplus
|
|
39
|
+
for (let i = 0; i < size; ++i) {
|
|
40
|
+
const w = new Worker('./decoder.worker');
|
|
41
|
+
this.workers.push(w);
|
|
42
|
+
this.idleWorkers.push(w);
|
|
43
|
+
}
|
|
44
|
+
}
|
|
45
|
+
|
|
46
|
+
/**
|
|
47
|
+
* Decode the given block of bytes with the set compression method.
|
|
48
|
+
* @param {ArrayBuffer} buffer the array buffer of bytes to decode.
|
|
49
|
+
* @returns {Promise.<ArrayBuffer>} the decoded result as a `Promise`
|
|
50
|
+
*/
|
|
51
|
+
async decode(fileDirectory: FileDirectory, buffer: ArrayBuffer) {
|
|
52
|
+
const currentWorker = await this.waitForWorker();
|
|
53
|
+
return new Promise((resolve, reject) => {
|
|
54
|
+
currentWorker.onmessage = (event) => {
|
|
55
|
+
// this.workers.push(currentWorker);
|
|
56
|
+
// eslint-disable-next-line
|
|
57
|
+
this.finishTask(currentWorker);
|
|
58
|
+
resolve(event.data[0]);
|
|
59
|
+
};
|
|
60
|
+
currentWorker.onerror = (error) => {
|
|
61
|
+
// this.workers.push(currentWorker);
|
|
62
|
+
// eslint-disable-next-line
|
|
63
|
+
this.finishTask(currentWorker);
|
|
64
|
+
reject(error);
|
|
65
|
+
};
|
|
66
|
+
currentWorker.postMessage(['decode', fileDirectory, buffer], [buffer]);
|
|
67
|
+
});
|
|
68
|
+
}
|
|
69
|
+
|
|
70
|
+
async waitForWorker() {
|
|
71
|
+
const idleWorker = this.idleWorkers.pop();
|
|
72
|
+
if (idleWorker) {
|
|
73
|
+
return idleWorker;
|
|
74
|
+
}
|
|
75
|
+
const waiter: any = {};
|
|
76
|
+
const promise = new Promise((resolve) => {
|
|
77
|
+
waiter.resolve = resolve;
|
|
78
|
+
});
|
|
79
|
+
|
|
80
|
+
this.waitQueue.push(waiter);
|
|
81
|
+
return promise as Promise<Worker>;
|
|
82
|
+
}
|
|
83
|
+
|
|
84
|
+
async finishTask(currentWorker: Worker) {
|
|
85
|
+
const waiter = this.waitQueue.pop();
|
|
86
|
+
if (waiter) {
|
|
87
|
+
waiter.resolve(currentWorker);
|
|
88
|
+
} else {
|
|
89
|
+
this.idleWorkers.push(currentWorker);
|
|
90
|
+
}
|
|
91
|
+
}
|
|
92
|
+
|
|
93
|
+
destroy() {
|
|
94
|
+
// eslint-disable-next-line no-plusplus
|
|
95
|
+
for (let i = 0; i < this.workers.length; ++i) {
|
|
96
|
+
this.workers[i].terminate();
|
|
97
|
+
}
|
|
98
|
+
}
|
|
99
|
+
}
|
|
@@ -0,0 +1,96 @@
|
|
|
1
|
+
// loaders.gl
|
|
2
|
+
// SPDX-License-Identifier: MIT
|
|
3
|
+
// Copyright (c) vis.gl contributors
|
|
4
|
+
|
|
5
|
+
import type {GeoTIFF} from 'geotiff';
|
|
6
|
+
import type Pool from './Pool';
|
|
7
|
+
|
|
8
|
+
const VIV_PROXY_KEY = '__viv';
|
|
9
|
+
const OFFSETS_PROXY_KEY = `${VIV_PROXY_KEY}-offsets` as const;
|
|
10
|
+
const POOL_PROXY_KEY = `${VIV_PROXY_KEY}-decoder-pool` as const;
|
|
11
|
+
|
|
12
|
+
/*
|
|
13
|
+
* Inspect if the GeoTIFF source is wrapped in our proxies,
|
|
14
|
+
* and warn if missing.
|
|
15
|
+
*/
|
|
16
|
+
export function checkProxies(tiff: GeoTIFF) {
|
|
17
|
+
if (!isProxy(tiff, OFFSETS_PROXY_KEY)) {
|
|
18
|
+
console.warn('GeoTIFF source is missing offsets proxy.'); // eslint-disable-line no-console
|
|
19
|
+
}
|
|
20
|
+
|
|
21
|
+
if (!isProxy(tiff, POOL_PROXY_KEY)) {
|
|
22
|
+
console.warn('GeoTIFF source is missing decoder-pool proxy.'); // eslint-disable-line no-console
|
|
23
|
+
}
|
|
24
|
+
}
|
|
25
|
+
|
|
26
|
+
/*
|
|
27
|
+
* > isProxy(tiff, POOL_PROXY_KEY) === true; // false
|
|
28
|
+
* > tiff = createPoolProxy(tiff, new Pool());
|
|
29
|
+
* > isProxy(tiff, POOL_PROXY_KEY) === true; // true
|
|
30
|
+
*/
|
|
31
|
+
function isProxy(tiff: GeoTIFF, proxyFlag: string) {
|
|
32
|
+
return (tiff as any)[proxyFlag] as boolean;
|
|
33
|
+
}
|
|
34
|
+
|
|
35
|
+
/*
|
|
36
|
+
* Creates an ES6 Proxy that wraps a GeoTIFF object. The proxy
|
|
37
|
+
* handler intercepts calls to `tiff.getImage` and uses our custom
|
|
38
|
+
* pre-computed offsets to pre-fetch the correct file directory.
|
|
39
|
+
*
|
|
40
|
+
* This is a bit of a hack. Internally GeoTIFF inspects `this.ifdRequests`
|
|
41
|
+
* to see which fileDirectories need to be traversed. By adding the
|
|
42
|
+
* ifdRequest for an 'index' manually, GeoTIFF will await that request
|
|
43
|
+
* rather than traversing the file system remotely.
|
|
44
|
+
*/
|
|
45
|
+
export function createOffsetsProxy(tiff: GeoTIFF, offsets: number[]) {
|
|
46
|
+
const get = (target: GeoTIFF, key: any) => {
|
|
47
|
+
// Intercept `tiff.getImage`
|
|
48
|
+
if (key === 'getImage') {
|
|
49
|
+
return (index: number) => {
|
|
50
|
+
// Manually add ifdRequest to tiff if missing and we have an offset.
|
|
51
|
+
if (!(index in target.ifdRequests) && index in offsets) {
|
|
52
|
+
const offset = offsets[index];
|
|
53
|
+
target.ifdRequests[index] = target.parseFileDirectoryAt(offset);
|
|
54
|
+
}
|
|
55
|
+
return target.getImage(index);
|
|
56
|
+
};
|
|
57
|
+
}
|
|
58
|
+
|
|
59
|
+
// tiff['__viv-offsets'] === true
|
|
60
|
+
if (key === OFFSETS_PROXY_KEY) {
|
|
61
|
+
return true;
|
|
62
|
+
}
|
|
63
|
+
|
|
64
|
+
return Reflect.get(target, key);
|
|
65
|
+
};
|
|
66
|
+
return new Proxy(tiff, {get});
|
|
67
|
+
}
|
|
68
|
+
|
|
69
|
+
/*
|
|
70
|
+
* Creates an ES6 Proxy that wraps a GeoTIFF object. The proxy
|
|
71
|
+
* handler intercepts calls to `tiff.readRasters` and injects
|
|
72
|
+
* a pool argument to every call. This means our TiffPixelSource
|
|
73
|
+
* doesn't need to be aware of whether a decoder pool is in use.
|
|
74
|
+
*
|
|
75
|
+
* > tiff.readRasters({ window }) -> tiff.readRasters({ window, pool });
|
|
76
|
+
*/
|
|
77
|
+
export function createPoolProxy(tiff: GeoTIFF, pool: Pool) {
|
|
78
|
+
const get = (target: GeoTIFF, key: any) => {
|
|
79
|
+
// Intercept calls to `image.readRasters`
|
|
80
|
+
if (key === 'readRasters') {
|
|
81
|
+
return (options: Parameters<typeof target.readRasters>) => {
|
|
82
|
+
// Inject `pool` argument with other raster options.
|
|
83
|
+
// @ts-ignore
|
|
84
|
+
return target.readRasters({...options, pool});
|
|
85
|
+
};
|
|
86
|
+
}
|
|
87
|
+
|
|
88
|
+
// tiff['__viv-decoder-pool'] === true
|
|
89
|
+
if (key === POOL_PROXY_KEY) {
|
|
90
|
+
return true;
|
|
91
|
+
}
|
|
92
|
+
|
|
93
|
+
return Reflect.get(target, key);
|
|
94
|
+
};
|
|
95
|
+
return new Proxy(tiff, {get});
|
|
96
|
+
}
|