@loaders.gl/geotiff 4.0.0-alpha.4 → 4.0.0-alpha.6

package/dist/esm/lib/ome/ome-indexers.js

@@ -0,0 +1,120 @@
+export function getOmeLegacyIndexer(tiff, rootMeta) {
+  const imgMeta = rootMeta[0];
+  const {
+    SizeT,
+    SizeC,
+    SizeZ
+  } = imgMeta.Pixels;
+  const ifdIndexer = getOmeIFDIndexer(imgMeta);
+  return (sel, pyramidLevel) => {
+    const index = ifdIndexer(sel);
+    const pyramidIndex = pyramidLevel * SizeZ * SizeT * SizeC;
+    return tiff.getImage(index + pyramidIndex);
+  };
+}
+export function getOmeSubIFDIndexer(tiff, rootMeta) {
+  const imgMeta = rootMeta[0];
+  const ifdIndexer = getOmeIFDIndexer(imgMeta);
+  const ifdCache = new Map();
+  return async (sel, pyramidLevel) => {
+    const index = ifdIndexer(sel);
+    const baseImage = await tiff.getImage(index);
+    if (pyramidLevel === 0) {
+      return baseImage;
+    }
+    const {
+      SubIFDs
+    } = baseImage.fileDirectory;
+    if (!SubIFDs) {
+      throw Error('Indexing Error: OME-TIFF is missing SubIFDs.');
+    }
+    const key = "".concat(sel.t, "-").concat(sel.c, "-").concat(sel.z, "-").concat(pyramidLevel);
+    if (!ifdCache.has(key)) {
+      const subIfdOffset = SubIFDs[pyramidLevel - 1];
+      ifdCache.set(key, tiff.parseFileDirectoryAt(subIfdOffset));
+    }
+    const ifd = await ifdCache.get(key);
+    return new baseImage.constructor(ifd.fileDirectory, ifd.geoKeyDirectory, tiff.dataView, tiff.littleEndian, tiff.cache, tiff.source);
+  };
+}
+function getOmeIFDIndexer(imgMeta) {
+  const {
+    SizeC,
+    SizeZ,
+    SizeT,
+    DimensionOrder
+  } = imgMeta.Pixels;
+  switch (DimensionOrder) {
+    case 'XYZCT':
+      {
+        return _ref => {
+          let {
+            t,
+            c,
+            z
+          } = _ref;
+          return t * SizeZ * SizeC + c * SizeZ + z;
+        };
+      }
+    case 'XYZTC':
+      {
+        return _ref2 => {
+          let {
+            t,
+            c,
+            z
+          } = _ref2;
+          return c * SizeZ * SizeT + t * SizeZ + z;
+        };
+      }
+    case 'XYCTZ':
+      {
+        return _ref3 => {
+          let {
+            t,
+            c,
+            z
+          } = _ref3;
+          return z * SizeC * SizeT + t * SizeC + c;
+        };
+      }
+    case 'XYCZT':
+      {
+        return _ref4 => {
+          let {
+            t,
+            c,
+            z
+          } = _ref4;
+          return t * SizeC * SizeZ + z * SizeC + c;
+        };
+      }
+    case 'XYTCZ':
+      {
+        return _ref5 => {
+          let {
+            t,
+            c,
+            z
+          } = _ref5;
+          return z * SizeT * SizeC + c * SizeT + t;
+        };
+      }
+    case 'XYTZC':
+      {
+        return _ref6 => {
+          let {
+            t,
+            c,
+            z
+          } = _ref6;
+          return c * SizeT * SizeZ + z * SizeT + t;
+        };
+      }
+    default:
+      {
+        throw new Error("Invalid OME-XML DimensionOrder, got ".concat(DimensionOrder, "."));
+      }
+  }
+}
+//# sourceMappingURL=ome-indexers.js.map

package/dist/esm/lib/ome/ome-indexers.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ome-indexers.js","names":["getOmeLegacyIndexer","tiff","rootMeta","imgMeta","SizeT","SizeC","SizeZ","Pixels","ifdIndexer","getOmeIFDIndexer","sel","pyramidLevel","index","pyramidIndex","getImage","getOmeSubIFDIndexer","ifdCache","Map","baseImage","SubIFDs","fileDirectory","Error","key","concat","t","c","z","has","subIfdOffset","set","parseFileDirectoryAt","ifd","get","constructor","geoKeyDirectory","dataView","littleEndian","cache","source","DimensionOrder","_ref","_ref2","_ref3","_ref4","_ref5","_ref6"],"sources":["../../../../src/lib/ome/ome-indexers.ts"],"sourcesContent":["import type {GeoTIFFImage, GeoTIFF, ImageFileDirectory} from 'geotiff';\nimport type {OMEXML} from '../ome/omexml';\n\nexport type OmeTiffSelection = {t: number; c: number; z: number};\nexport type OmeTiffIndexer = (sel: OmeTiffSelection, z: number) => Promise<GeoTIFFImage>;\n\n/*\n * An \"indexer\" for a GeoTIFF-based source is a function that takes a\n * \"selection\" (e.g. { z, t, c }) and returns a Promise for the GeoTIFFImage\n * object corresponding to that selection.\n *\n * For OME-TIFF images, the \"selection\" object is the same regardless of\n * the format version. However, modern version of Bioformats have a different\n * memory layout for pyramidal resolutions. Thus, we have two different \"indexers\"\n * depending on which format version is detected.\n *\n * TODO: We currently only support indexing the first image in the OME-TIFF with\n * our indexers. There can be multiple images in an OME-TIFF, so supporting these\n * images will require extending these indexers or creating new methods.\n */\n\n/*\n * Returns an indexer for legacy Bioformats images. This assumes that\n * downsampled resolutions are stored sequentially in the OME-TIFF.\n */\nexport function getOmeLegacyIndexer(tiff: GeoTIFF, rootMeta: OMEXML): OmeTiffIndexer {\n  const imgMeta = rootMeta[0];\n  const {SizeT, SizeC, SizeZ} = imgMeta.Pixels;\n  const ifdIndexer = getOmeIFDIndexer(imgMeta);\n\n  return (sel: OmeTiffSelection, pyramidLevel: number) => {\n    // Get IFD index at base pyramid level\n    const index = ifdIndexer(sel);\n    // Get index of first image at pyramidal level\n    const pyramidIndex = pyramidLevel * SizeZ * SizeT * SizeC;\n    // Return image at IFD index for pyramidal level\n    return tiff.getImage(index + pyramidIndex);\n  };\n}\n\n/*\n * Returns an indexer for modern Bioforamts images that store multiscale\n * resolutions using SubIFDs.\n *\n * The ifdIndexer returns the 'index' to the base resolution for a\n * particular 'selection'. The SubIFDs to the downsampled resolutions\n * of the 'selection' are stored within the `baseImage.fileDirectory`.\n * We use the SubIFDs to get the IFD for the corresponding sub-resolution.\n *\n * NOTE: This function create a custom IFD cache rather than mutating\n * `GeoTIFF.ifdRequests` with a random offset. The IFDs are cached in\n * an ES6 Map that maps a string key that identifies the selection uniquely\n * to the corresponding IFD.\n */\nexport function getOmeSubIFDIndexer(tiff: GeoTIFF, rootMeta: OMEXML): OmeTiffIndexer {\n  const imgMeta = rootMeta[0];\n  const ifdIndexer = getOmeIFDIndexer(imgMeta);\n  const ifdCache: Map<string, Promise<ImageFileDirectory>> = new Map();\n\n  return async (sel: OmeTiffSelection, pyramidLevel: number) => {\n    const index = ifdIndexer(sel);\n    const baseImage = await tiff.getImage(index);\n\n    // It's the highest resolution, no need to look up SubIFDs.\n    if (pyramidLevel === 0) {\n      return baseImage;\n    }\n\n    const {SubIFDs} = baseImage.fileDirectory;\n    if (!SubIFDs) {\n      throw Error('Indexing Error: OME-TIFF is missing SubIFDs.');\n    }\n\n    // Get IFD for the selection at the pyramidal level\n    const key = `${sel.t}-${sel.c}-${sel.z}-${pyramidLevel}`;\n    if (!ifdCache.has(key)) {\n      // Only create a new request if we don't have the key.\n      const subIfdOffset = SubIFDs[pyramidLevel - 1];\n      ifdCache.set(key, tiff.parseFileDirectoryAt(subIfdOffset));\n    }\n    const ifd = (await ifdCache.get(key)) as ImageFileDirectory;\n\n    // Create a new image object manually from IFD\n    // https://github.com/geotiffjs/geotiff.js/blob/8ef472f41b51d18074aece2300b6a8ad91a21ae1/src/geotiff.js#L447-L453\n    return new (baseImage.constructor as any)(\n      ifd.fileDirectory,\n      ifd.geoKeyDirectory,\n      tiff.dataView,\n      tiff.littleEndian,\n      tiff.cache,\n      tiff.source\n    ) as GeoTIFFImage;\n  };\n}\n\n/*\n * Returns a function that computes the image index based on the dimension\n * order and dimension sizes.\n */\nfunction getOmeIFDIndexer(imgMeta: OMEXML[0]): (sel: OmeTiffSelection) => number {\n  const {SizeC, SizeZ, SizeT, DimensionOrder} = imgMeta.Pixels;\n  switch (DimensionOrder) {\n    case 'XYZCT': {\n      return ({t, c, z}) => t * SizeZ * SizeC + c * SizeZ + z;\n    }\n    case 'XYZTC': {\n      return ({t, c, z}) => c * SizeZ * SizeT + t * SizeZ + z;\n    }\n    case 'XYCTZ': {\n      return ({t, c, z}) => z * SizeC * SizeT + t * SizeC + c;\n    }\n    case 'XYCZT': {\n      return ({t, c, z}) => t * SizeC * SizeZ + z * SizeC + c;\n    }\n    case 'XYTCZ': {\n      return ({t, c, z}) => z * SizeT * SizeC + c * SizeT + t;\n    }\n    case 'XYTZC': {\n      return ({t, c, z}) => c * SizeT * SizeZ + z * SizeT + t;\n    }\n    default: {\n      throw new Error(`Invalid OME-XML DimensionOrder, got ${DimensionOrder}.`);\n    }\n  }\n}\n"],"mappings":"AAyBA,OAAO,SAASA,mBAAmBA,CAACC,IAAa,EAAEC,QAAgB,EAAkB;EACnF,MAAMC,OAAO,GAAGD,QAAQ,CAAC,CAAC,CAAC;EAC3B,MAAM;IAACE,KAAK;IAAEC,KAAK;IAAEC;EAAK,CAAC,GAAGH,OAAO,CAACI,MAAM;EAC5C,MAAMC,UAAU,GAAGC,gBAAgB,CAACN,OAAO,CAAC;EAE5C,OAAO,CAACO,GAAqB,EAAEC,YAAoB,KAAK;IAEtD,MAAMC,KAAK,GAAGJ,UAAU,CAACE,GAAG,CAAC;IAE7B,MAAMG,YAAY,GAAGF,YAAY,GAAGL,KAAK,GAAGF,KAAK,GAAGC,KAAK;IAEzD,OAAOJ,IAAI,CAACa,QAAQ,CAACF,KAAK,GAAGC,YAAY,CAAC;EAC5C,CAAC;AACH;AAgBA,OAAO,SAASE,mBAAmBA,CAACd,IAAa,EAAEC,QAAgB,EAAkB;EACnF,MAAMC,OAAO,GAAGD,QAAQ,CAAC,CAAC,CAAC;EAC3B,MAAMM,UAAU,GAAGC,gBAAgB,CAACN,OAAO,CAAC;EAC5C,MAAMa,QAAkD,GAAG,IAAIC,GAAG,CAAC,CAAC;EAEpE,OAAO,OAAOP,GAAqB,EAAEC,YAAoB,KAAK;IAC5D,MAAMC,KAAK,GAAGJ,UAAU,CAACE,GAAG,CAAC;IAC7B,MAAMQ,SAAS,GAAG,MAAMjB,IAAI,CAACa,QAAQ,CAACF,KAAK,CAAC;IAG5C,IAAID,YAAY,KAAK,CAAC,EAAE;MACtB,OAAOO,SAAS;IAClB;IAEA,MAAM;MAACC;IAAO,CAAC,GAAGD,SAAS,CAACE,aAAa;IACzC,IAAI,CAACD,OAAO,EAAE;MACZ,MAAME,KAAK,CAAC,8CAA8C,CAAC;IAC7D;IAGA,MAAMC,GAAG,MAAAC,MAAA,CAAMb,GAAG,CAACc,CAAC,OAAAD,MAAA,CAAIb,GAAG,CAACe,CAAC,OAAAF,MAAA,CAAIb,GAAG,CAACgB,CAAC,OAAAH,MAAA,CAAIZ,YAAY,CAAE;IACxD,IAAI,CAACK,QAAQ,CAACW,GAAG,CAACL,GAAG,CAAC,EAAE;MAEtB,MAAMM,YAAY,GAAGT,OAAO,CAACR,YAAY,GAAG,CAAC,CAAC;MAC9CK,QAAQ,CAACa,GAAG,CAACP,GAAG,EAAErB,IAAI,CAAC6B,oBAAoB,CAACF,YAAY,CAAC,CAAC;IAC5D;IACA,MAAMG,GAAG,GAAI,MAAMf,QAAQ,CAACgB,GAAG,CAACV,GAAG,CAAwB;IAI3D,OAAO,IAAKJ,SAAS,CAACe,WAAW,CAC/BF,GAAG,CAACX,aAAa,EACjBW,GAAG,CAACG,eAAe,EACnBjC,IAAI,CAACkC,QAAQ,EACblC,IAAI,CAACmC,YAAY,EACjBnC,IAAI,CAACoC,KAAK,EACVpC,IAAI,CAACqC,MACP,CAAC;EACH,CAAC;AACH;AAMA,SAAS7B,gBAAgBA,CAACN,OAAkB,EAAqC;EAC/E,MAAM;IAACE,KAAK;IAAEC,KAAK;IAAEF,KAAK;IAAEmC;EAAc,CAAC,GAAGpC,OAAO,CAACI,MAAM;EAC5D,QAAQgC,cAAc;IACpB,KAAK,OAAO;MAAE;QACZ,OAAOC,IAAA;UAAA,IAAC;YAAChB,CAAC;YAAEC,CAAC;YAAEC;UAAC,CAAC,GAAAc,IAAA;UAAA,OAAKhB,CAAC,GAAGlB,KAAK,GAAGD,KAAK,GAAGoB,CAAC,GAAGnB,KAAK,GAAGoB,CAAC;QAAA;MACzD;IACA,KAAK,OAAO;MAAE;QACZ,OAAOe,KAAA;UAAA,IAAC;YAACjB,CAAC;YAAEC,CAAC;YAAEC;UAAC,CAAC,GAAAe,KAAA;UAAA,OAAKhB,CAAC,GAAGnB,KAAK,GAAGF,KAAK,GAAGoB,CAAC,GAAGlB,KAAK,GAAGoB,CAAC;QAAA;MACzD;IACA,KAAK,OAAO;MAAE;QACZ,OAAOgB,KAAA;UAAA,IAAC;YAAClB,CAAC;YAAEC,CAAC;YAAEC;UAAC,CAAC,GAAAgB,KAAA;UAAA,OAAKhB,CAAC,GAAGrB,KAAK,GAAGD,KAAK,GAAGoB,CAAC,GAAGnB,KAAK,GAAGoB,CAAC;QAAA;MACzD;IACA,KAAK,OAAO;MAAE;QACZ,OAAOkB,KAAA;UAAA,IAAC;YAACnB,CAAC;YAAEC,CAAC;YAAEC;UAAC,CAAC,GAAAiB,KAAA;UAAA,OAAKnB,CAAC,GAAGnB,KAAK,GAAGC,KAAK,GAAGoB,CAAC,GAAGrB,KAAK,GAAGoB,CAAC;QAAA;MACzD;IACA,KAAK,OAAO;MAAE;QACZ,OAAOmB,KAAA;UAAA,IAAC;YAACpB,CAAC;YAAEC,CAAC;YAAEC;UAAC,CAAC,GAAAkB,KAAA;UAAA,OAAKlB,CAAC,GAAGtB,KAAK,GAAGC,KAAK,GAAGoB,CAAC,GAAGrB,KAAK,GAAGoB,CAAC;QAAA;MACzD;IACA,KAAK,OAAO;MAAE;QACZ,OAAOqB,KAAA;UAAA,IAAC;YAACrB,CAAC;YAAEC,CAAC;YAAEC;UAAC,CAAC,GAAAmB,KAAA;UAAA,OAAKpB,CAAC,GAAGrB,KAAK,GAAGE,KAAK,GAAGoB,CAAC,GAAGtB,KAAK,GAAGoB,CAAC;QAAA;MACzD;IACA;MAAS;QACP,MAAM,IAAIH,KAAK,wCAAAE,MAAA,CAAwCgB,cAAc,MAAG,CAAC;MAC3E;EACF;AACF"}

package/dist/esm/lib/ome/ome-utils.js

@@ -0,0 +1,66 @@
+import { getDims, getLabels } from './utils';
+export const DTYPE_LOOKUP = {
+  uint8: 'Uint8',
+  uint16: 'Uint16',
+  uint32: 'Uint32',
+  float: 'Float32',
+  double: 'Float64',
+  int8: 'Int8',
+  int16: 'Int16',
+  int32: 'Int32'
+};
+export function getOmePixelSourceMeta(_ref) {
+  let {
+    Pixels
+  } = _ref;
+  const labels = getLabels(Pixels.DimensionOrder);
+  const dims = getDims(labels);
+  const shape = Array(labels.length).fill(0);
+  shape[dims('t')] = Pixels.SizeT;
+  shape[dims('c')] = Pixels.SizeC;
+  shape[dims('z')] = Pixels.SizeZ;
+  if (Pixels.Interleaved) {
+    labels.push('_c');
+    shape.push(3);
+  }
+  const getShape = level => {
+    const s = [...shape];
+    s[dims('x')] = Pixels.SizeX >> level;
+    s[dims('y')] = Pixels.SizeY >> level;
+    return s;
+  };
+  if (!(Pixels.Type in DTYPE_LOOKUP)) {
+    throw Error("Pixel type ".concat(Pixels.Type, " not supported."));
+  }
+  const dtype = DTYPE_LOOKUP[Pixels.Type];
+  if (Pixels.PhysicalSizeX && Pixels.PhysicalSizeY) {
+    const physicalSizes = {
+      x: {
+        size: Pixels.PhysicalSizeX,
+        unit: Pixels.PhysicalSizeXUnit
+      },
+      y: {
+        size: Pixels.PhysicalSizeY,
+        unit: Pixels.PhysicalSizeYUnit
+      }
+    };
+    if (Pixels.PhysicalSizeZ) {
+      physicalSizes.z = {
+        size: Pixels.PhysicalSizeZ,
+        unit: Pixels.PhysicalSizeZUnit
+      };
+    }
+    return {
+      labels,
+      getShape,
+      physicalSizes,
+      dtype
+    };
+  }
+  return {
+    labels,
+    getShape,
+    dtype
+  };
+}
+//# sourceMappingURL=ome-utils.js.map

package/dist/esm/lib/ome/ome-utils.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ome-utils.js","names":["getDims","getLabels","DTYPE_LOOKUP","uint8","uint16","uint32","float","double","int8","int16","int32","getOmePixelSourceMeta","_ref","Pixels","labels","DimensionOrder","dims","shape","Array","length","fill","SizeT","SizeC","SizeZ","Interleaved","push","getShape","level","s","SizeX","SizeY","Type","Error","concat","dtype","PhysicalSizeX","PhysicalSizeY","physicalSizes","x","size","unit","PhysicalSizeXUnit","y","PhysicalSizeYUnit","PhysicalSizeZ","z","PhysicalSizeZUnit"],"sources":["../../../../src/lib/ome/ome-utils.ts"],"sourcesContent":["import {getDims, getLabels} from './utils';\nimport type {OMEXML, UnitsLength} from './omexml';\n\nexport const DTYPE_LOOKUP = {\n  uint8: 'Uint8',\n  uint16: 'Uint16',\n  uint32: 'Uint32',\n  float: 'Float32',\n  double: 'Float64',\n  int8: 'Int8',\n  int16: 'Int16',\n  int32: 'Int32'\n} as const;\n\nexport function getOmePixelSourceMeta({Pixels}: OMEXML[0]) {\n  // e.g. 'XYZCT' -> ['t', 'c', 'z', 'y', 'x']\n  const labels = getLabels(Pixels.DimensionOrder);\n\n  // Compute \"shape\" of image\n  const dims = getDims(labels);\n  const shape: number[] = Array(labels.length).fill(0);\n  shape[dims('t')] = Pixels.SizeT;\n  shape[dims('c')] = Pixels.SizeC;\n  shape[dims('z')] = Pixels.SizeZ;\n\n  // Push extra dimension if data are interleaved.\n  if (Pixels.Interleaved) {\n    // @ts-ignore\n    labels.push('_c');\n    shape.push(3);\n  }\n\n  // Creates a new shape for different level of pyramid.\n  // Assumes factor-of-two downsampling.\n  const getShape = (level: number) => {\n    const s = [...shape];\n    s[dims('x')] = Pixels.SizeX >> level;\n    s[dims('y')] = Pixels.SizeY >> level;\n    return s;\n  };\n\n  if (!(Pixels.Type in DTYPE_LOOKUP)) {\n    throw Error(`Pixel type ${Pixels.Type} not supported.`);\n  }\n\n  const dtype = DTYPE_LOOKUP[Pixels.Type as keyof typeof DTYPE_LOOKUP];\n  if (Pixels.PhysicalSizeX && Pixels.PhysicalSizeY) {\n    const physicalSizes: {\n      [k: string]: {size: number; unit: UnitsLength};\n    } = {\n      x: {\n        size: Pixels.PhysicalSizeX,\n        unit: Pixels.PhysicalSizeXUnit\n      },\n      y: {\n        size: Pixels.PhysicalSizeY,\n        unit: Pixels.PhysicalSizeYUnit\n      }\n    };\n    if (Pixels.PhysicalSizeZ) {\n      physicalSizes.z = {\n        size: Pixels.PhysicalSizeZ,\n        unit: Pixels.PhysicalSizeZUnit\n      };\n    }\n    return {labels, getShape, physicalSizes, dtype};\n  }\n\n  return {labels, getShape, dtype};\n}\n"],"mappings":"AAAA,SAAQA,OAAO,EAAEC,SAAS,QAAO,SAAS;AAG1C,OAAO,MAAMC,YAAY,GAAG;EAC1BC,KAAK,EAAE,OAAO;EACdC,MAAM,EAAE,QAAQ;EAChBC,MAAM,EAAE,QAAQ;EAChBC,KAAK,EAAE,SAAS;EAChBC,MAAM,EAAE,SAAS;EACjBC,IAAI,EAAE,MAAM;EACZC,KAAK,EAAE,OAAO;EACdC,KAAK,EAAE;AACT,CAAU;AAEV,OAAO,SAASC,qBAAqBA,CAAAC,IAAA,EAAsB;EAAA,IAArB;IAACC;EAAiB,CAAC,GAAAD,IAAA;EAEvD,MAAME,MAAM,GAAGb,SAAS,CAACY,MAAM,CAACE,cAAc,CAAC;EAG/C,MAAMC,IAAI,GAAGhB,OAAO,CAACc,MAAM,CAAC;EAC5B,MAAMG,KAAe,GAAGC,KAAK,CAACJ,MAAM,CAACK,MAAM,CAAC,CAACC,IAAI,CAAC,CAAC,CAAC;EACpDH,KAAK,CAACD,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGH,MAAM,CAACQ,KAAK;EAC/BJ,KAAK,CAACD,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGH,MAAM,CAACS,KAAK;EAC/BL,KAAK,CAACD,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGH,MAAM,CAACU,KAAK;EAG/B,IAAIV,MAAM,CAACW,WAAW,EAAE;IAEtBV,MAAM,CAACW,IAAI,CAAC,IAAI,CAAC;IACjBR,KAAK,CAACQ,IAAI,CAAC,CAAC,CAAC;EACf;EAIA,MAAMC,QAAQ,GAAIC,KAAa,IAAK;IAClC,MAAMC,CAAC,GAAG,CAAC,GAAGX,KAAK,CAAC;IACpBW,CAAC,CAACZ,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGH,MAAM,CAACgB,KAAK,IAAIF,KAAK;IACpCC,CAAC,CAACZ,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGH,MAAM,CAACiB,KAAK,IAAIH,KAAK;IACpC,OAAOC,CAAC;EACV,CAAC;EAED,IAAI,EAAEf,MAAM,CAACkB,IAAI,IAAI7B,YAAY,CAAC,EAAE;IAClC,MAAM8B,KAAK,eAAAC,MAAA,CAAepB,MAAM,CAACkB,IAAI,oBAAiB,CAAC;EACzD;EAEA,MAAMG,KAAK,GAAGhC,YAAY,CAACW,MAAM,CAACkB,IAAI,CAA8B;EACpE,IAAIlB,MAAM,CAACsB,aAAa,IAAItB,MAAM,CAACuB,aAAa,EAAE;IAChD,MAAMC,aAEL,GAAG;MACFC,CAAC,EAAE;QACDC,IAAI,EAAE1B,MAAM,CAACsB,aAAa;QAC1BK,IAAI,EAAE3B,MAAM,CAAC4B;MACf,CAAC;MACDC,CAAC,EAAE;QACDH,IAAI,EAAE1B,MAAM,CAACuB,aAAa;QAC1BI,IAAI,EAAE3B,MAAM,CAAC8B;MACf;IACF,CAAC;IACD,IAAI9B,MAAM,CAAC+B,aAAa,EAAE;MACxBP,aAAa,CAACQ,CAAC,GAAG;QAChBN,IAAI,EAAE1B,MAAM,CAAC+B,aAAa;QAC1BJ,IAAI,EAAE3B,MAAM,CAACiC;MACf,CAAC;IACH;IACA,OAAO;MAAChC,MAAM;MAAEY,QAAQ;MAAEW,aAAa;MAAEH;IAAK,CAAC;EACjD;EAEA,OAAO;IAACpB,MAAM;IAAEY,QAAQ;IAAEQ;EAAK,CAAC;AAClC"}

package/dist/esm/lib/ome/omexml.js

@@ -0,0 +1,64 @@
+import parser from 'fast-xml-parser';
+import { ensureArray, intToRgba } from '../utils/tiff-utils';
+const PARSER_OPTIONS = {
+  attributeNamePrefix: '',
+  attrNodeName: 'attr',
+  parseNodeValue: true,
+  parseAttributeValue: true,
+  ignoreAttributes: false
+};
+const parse = str => parser.parse(str, PARSER_OPTIONS);
+export function fromString(str) {
+  const res = parse(str);
+  if (!res.OME) {
+    throw Error('Failed to parse OME-XML metadata.');
+  }
+  return ensureArray(res.OME.Image).map(img => {
+    const Channels = ensureArray(img.Pixels.Channel).map(c => {
+      if ('Color' in c.attr) {
+        return {
+          ...c.attr,
+          Color: intToRgba(c.attr.Color)
+        };
+      }
+      return {
+        ...c.attr
+      };
+    });
+    const {
+      AquisitionDate = '',
+      Description = ''
+    } = img;
+    const image = {
+      ...img.attr,
+      AquisitionDate,
+      Description,
+      Pixels: {
+        ...img.Pixels.attr,
+        Channels
+      }
+    };
+    return {
+      ...image,
+      format() {
+        const {
+          Pixels
+        } = image;
+        const sizes = ['X', 'Y', 'Z'].map(name => {
+          const size = Pixels["PhysicalSize".concat(name)];
+          const unit = Pixels["PhysicalSize".concat(name, "Unit")];
+          return size && unit ? "".concat(size, " ").concat(unit) : '-';
+        }).join(' x ');
+        return {
+          'Acquisition Date': image.AquisitionDate,
+          'Dimensions (XY)': "".concat(Pixels.SizeX, " x ").concat(Pixels.SizeY),
+          'Pixels Type': Pixels.Type,
+          'Pixels Size (XYZ)': sizes,
+          'Z-sections/Timepoints': "".concat(Pixels.SizeZ, " x ").concat(Pixels.SizeT),
+          Channels: Pixels.SizeC
+        };
+      }
+    };
+  });
+}
+//# sourceMappingURL=omexml.js.map

package/dist/esm/lib/ome/omexml.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"omexml.js","names":["parser","ensureArray","intToRgba","PARSER_OPTIONS","attributeNamePrefix","attrNodeName","parseNodeValue","parseAttributeValue","ignoreAttributes","parse","str","fromString","res","OME","Error","Image","map","img","Channels","Pixels","Channel","c","attr","Color","AquisitionDate","Description","image","format","sizes","name","size","concat","unit","join","SizeX","SizeY","Type","SizeZ","SizeT","SizeC"],"sources":["../../../../src/lib/ome/omexml.ts"],"sourcesContent":["import parser from 'fast-xml-parser';\nimport {ensureArray, intToRgba} from '../utils/tiff-utils';\n\n// WARNING: Changes to the parser options _will_ effect the types in types/omexml.d.ts.\nconst PARSER_OPTIONS = {\n  // Nests attributes withtout prefix under 'attr' key for each node\n  attributeNamePrefix: '',\n  attrNodeName: 'attr',\n\n  // Parses numbers for both attributes and nodes\n  parseNodeValue: true,\n  parseAttributeValue: true,\n\n  // Forces attributes to be parsed\n  ignoreAttributes: false\n};\n\nconst parse = (str: string): Root => parser.parse(str, PARSER_OPTIONS);\n\nexport function fromString(str: string) {\n  const res = parse(str);\n  if (!res.OME) {\n    throw Error('Failed to parse OME-XML metadata.');\n  }\n  return ensureArray(res.OME.Image).map((img) => {\n    const Channels = ensureArray(img.Pixels.Channel).map((c) => {\n      if ('Color' in c.attr) {\n        return {...c.attr, Color: intToRgba(c.attr.Color)};\n      }\n      return {...c.attr};\n    });\n    const {AquisitionDate = '', Description = ''} = img;\n    const image = {\n      ...img.attr,\n      AquisitionDate,\n      Description,\n      Pixels: {\n        ...img.Pixels.attr,\n        Channels\n      }\n    };\n    return {\n      ...image,\n      format() {\n        const {Pixels} = image;\n\n        const sizes = (['X', 'Y', 'Z'] as const)\n          .map((name) => {\n            const size = Pixels[`PhysicalSize${name}` as const];\n            const unit = Pixels[`PhysicalSize${name}Unit` as const];\n            return size && unit ? `${size} ${unit}` : '-';\n          })\n          .join(' x ');\n\n        return {\n          'Acquisition Date': image.AquisitionDate,\n          'Dimensions (XY)': `${Pixels.SizeX} x ${Pixels.SizeY}`,\n          'Pixels Type': Pixels.Type,\n          'Pixels Size (XYZ)': sizes,\n          'Z-sections/Timepoints': `${Pixels.SizeZ} x ${Pixels.SizeT}`,\n          Channels: Pixels.SizeC\n        };\n      }\n    };\n  });\n}\n\nexport type OMEXML = ReturnType<typeof fromString>;\nexport type DimensionOrder = 'XYZCT' | 'XYZTC' | 'XYCTZ' | 'XYCZT' | 'XYTCZ' | 'XYTZC';\n\n// Structure of node is determined by the PARSER_OPTIONS.\ntype Node<T, A> = T & {attr: A};\ntype Attrs<Fields extends string, T = string> = {[K in Fields]: T};\n\ntype OMEAttrs = Attrs<'xmlns' | 'xmlns:xsi' | 'xsi:schemaLocation'>;\ntype OME = Node<{Insturment: Insturment; Image: Image | Image[]}, OMEAttrs>;\n\ntype Insturment = Node<\n  {Objective: Node<{}, Attrs<'ID' | 'Model' | 'NominalMagnification'>>},\n  Attrs<'ID'>\n>;\n\ninterface ImageNodes {\n  AquisitionDate?: string;\n  Description?: string;\n  Pixels: Pixels;\n  InstrumentRef: Node<{}, {ID: string}>;\n  ObjectiveSettings: Node<{}, {ID: string}>;\n}\ntype Image = Node<ImageNodes, Attrs<'ID' | 'Name'>>;\n\ntype PixelType =\n  | 'int8'\n  | 'int16'\n  | 'int32'\n  | 'uint8'\n  | 'uint16'\n  | 'uint32'\n  | 'float'\n  | 'bit'\n  | 'double'\n  | 'complex'\n  | 'double-complex';\n\nexport type UnitsLength =\n  | 'Ym'\n  | 'Zm'\n  | 'Em'\n  | 'Pm'\n  | 'Tm'\n  | 'Gm'\n  | 'Mm'\n  | 'km'\n  | 'hm'\n  | 'dam'\n  | 'm'\n  | 'dm'\n  | 'cm'\n  | 'mm'\n  | 'µm'\n  | 'nm'\n  | 'pm'\n  | 'fm'\n  | 'am'\n  | 'zm'\n  | 'ym'\n  | 'Å'\n  | 'thou'\n  | 'li'\n  | 'in'\n  | 'ft'\n  | 'yd'\n  | 'mi'\n  | 'ua'\n  | 'ly'\n  | 'pc'\n  | 'pt'\n  | 'pixel'\n  | 'reference frame';\n\ntype PhysicalSize<Name extends string> = `PhysicalSize${Name}`;\ntype PhysicalSizeUnit<Name extends string> = `PhysicalSize${Name}Unit`;\ntype Size<Names extends string> = `Size${Names}`;\n\ntype PixelAttrs = Attrs<\n  PhysicalSize<'X' | 'Y' | 'Z'> | 'SignificantBits' | Size<'T' | 'C' | 'Z' | 'Y' | 'X'>,\n  number\n> &\n  Attrs<PhysicalSizeUnit<'X' | 'Y' | 'Z'>, UnitsLength> &\n  Attrs<'BigEndian' | 'Interleaved', boolean> & {\n    ID: string;\n    DimensionOrder: DimensionOrder;\n    Type: PixelType;\n  };\n\ntype Pixels = Node<\n  {\n    Channel: Channel | Channel[];\n    TiffData: Node<{}, Attrs<'IFD' | 'PlaneCount'>>;\n  },\n  PixelAttrs\n>;\n\ntype ChannelAttrs =\n  | {\n      ID: string;\n      SamplesPerPixel: number;\n      Name?: string;\n    }\n  | {\n      ID: string;\n      SamplesPerPixel: number;\n      Name?: string;\n      Color: number;\n    };\n\ntype Channel = Node<{}, ChannelAttrs>;\n\ntype Root = {OME: OME};\n"],"mappings":"AAAA,OAAOA,MAAM,MAAM,iBAAiB;AACpC,SAAQC,WAAW,EAAEC,SAAS,QAAO,qBAAqB;AAG1D,MAAMC,cAAc,GAAG;EAErBC,mBAAmB,EAAE,EAAE;EACvBC,YAAY,EAAE,MAAM;EAGpBC,cAAc,EAAE,IAAI;EACpBC,mBAAmB,EAAE,IAAI;EAGzBC,gBAAgB,EAAE;AACpB,CAAC;AAED,MAAMC,KAAK,GAAIC,GAAW,IAAWV,MAAM,CAACS,KAAK,CAACC,GAAG,EAAEP,cAAc,CAAC;AAEtE,OAAO,SAASQ,UAAUA,CAACD,GAAW,EAAE;EACtC,MAAME,GAAG,GAAGH,KAAK,CAACC,GAAG,CAAC;EACtB,IAAI,CAACE,GAAG,CAACC,GAAG,EAAE;IACZ,MAAMC,KAAK,CAAC,mCAAmC,CAAC;EAClD;EACA,OAAOb,WAAW,CAACW,GAAG,CAACC,GAAG,CAACE,KAAK,CAAC,CAACC,GAAG,CAAEC,GAAG,IAAK;IAC7C,MAAMC,QAAQ,GAAGjB,WAAW,CAACgB,GAAG,CAACE,MAAM,CAACC,OAAO,CAAC,CAACJ,GAAG,CAAEK,CAAC,IAAK;MAC1D,IAAI,OAAO,IAAIA,CAAC,CAACC,IAAI,EAAE;QACrB,OAAO;UAAC,GAAGD,CAAC,CAACC,IAAI;UAAEC,KAAK,EAAErB,SAAS,CAACmB,CAAC,CAACC,IAAI,CAACC,KAAK;QAAC,CAAC;MACpD;MACA,OAAO;QAAC,GAAGF,CAAC,CAACC;MAAI,CAAC;IACpB,CAAC,CAAC;IACF,MAAM;MAACE,cAAc,GAAG,EAAE;MAAEC,WAAW,GAAG;IAAE,CAAC,GAAGR,GAAG;IACnD,MAAMS,KAAK,GAAG;MACZ,GAAGT,GAAG,CAACK,IAAI;MACXE,cAAc;MACdC,WAAW;MACXN,MAAM,EAAE;QACN,GAAGF,GAAG,CAACE,MAAM,CAACG,IAAI;QAClBJ;MACF;IACF,CAAC;IACD,OAAO;MACL,GAAGQ,KAAK;MACRC,MAAMA,CAAA,EAAG;QACP,MAAM;UAACR;QAAM,CAAC,GAAGO,KAAK;QAEtB,MAAME,KAAK,GAAI,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAC3BZ,GAAG,CAAEa,IAAI,IAAK;UACb,MAAMC,IAAI,GAAGX,MAAM,gBAAAY,MAAA,CAAgBF,IAAI,EAAY;UACnD,MAAMG,IAAI,GAAGb,MAAM,gBAAAY,MAAA,CAAgBF,IAAI,UAAgB;UACvD,OAAOC,IAAI,IAAIE,IAAI,MAAAD,MAAA,CAAMD,IAAI,OAAAC,MAAA,CAAIC,IAAI,IAAK,GAAG;QAC/C,CAAC,CAAC,CACDC,IAAI,CAAC,KAAK,CAAC;QAEd,OAAO;UACL,kBAAkB,EAAEP,KAAK,CAACF,cAAc;UACxC,iBAAiB,KAAAO,MAAA,CAAKZ,MAAM,CAACe,KAAK,SAAAH,MAAA,CAAMZ,MAAM,CAACgB,KAAK,CAAE;UACtD,aAAa,EAAEhB,MAAM,CAACiB,IAAI;UAC1B,mBAAmB,EAAER,KAAK;UAC1B,uBAAuB,KAAAG,MAAA,CAAKZ,MAAM,CAACkB,KAAK,SAAAN,MAAA,CAAMZ,MAAM,CAACmB,KAAK,CAAE;UAC5DpB,QAAQ,EAAEC,MAAM,CAACoB;QACnB,CAAC;MACH;IACF,CAAC;EACH,CAAC,CAAC;AACJ"}

package/dist/esm/lib/ome/utils.js

@@ -0,0 +1,17 @@
+export function getLabels(dimOrder) {
+  return dimOrder.toLowerCase().split('').reverse();
+}
+export function getDims(labels) {
+  const lookup = new Map(labels.map((name, i) => [name, i]));
+  if (lookup.size !== labels.length) {
+    throw Error('Labels must be unique, found duplicated label.');
+  }
+  return name => {
+    const index = lookup.get(name);
+    if (index === undefined) {
+      throw Error('Invalid dimension.');
+    }
+    return index;
+  };
+}
+//# sourceMappingURL=utils.js.map

package/dist/esm/lib/ome/utils.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"utils.js","names":["getLabels","dimOrder","toLowerCase","split","reverse","getDims","labels","lookup","Map","map","name","i","size","length","Error","index","get","undefined"],"sources":["../../../../src/lib/ome/utils.ts"],"sourcesContent":["import type {OMEXML} from '../ome/omexml';\nimport type {Labels} from '../../types';\n\n/*\n * Creates typed labels from DimensionOrder.\n * > imgMeta.Pixels.DimensionOrder === 'XYCZT'\n * > getLabels(imgMeta.Pixels) === ['t', 'z', 'c', 'y', 'x']\n */\n\n// eslint-disable-next-line @typescript-eslint/no-unused-vars\ntype Sel<Dim extends string> = Dim extends `${infer Z}${infer X}${infer A}${infer B}${infer C}`\n  ? [C, B, A]\n  : 'error';\nexport function getLabels(dimOrder: OMEXML[0]['Pixels']['DimensionOrder']) {\n  return dimOrder.toLowerCase().split('').reverse() as Labels<Sel<Lowercase<typeof dimOrder>>>;\n}\n\n/*\n * Creates an ES6 map of 'label' -> index\n * > const labels = ['a', 'b', 'c', 'd'];\n * > const dims = getDims(labels);\n * > dims('a') === 0;\n * > dims('b') === 1;\n * > dims('c') === 2;\n * > dims('hi!'); // throws\n */\nexport function getDims<S extends string>(labels: S[]) {\n  const lookup = new Map(labels.map((name, i) => [name, i]));\n  if (lookup.size !== labels.length) {\n    throw Error('Labels must be unique, found duplicated label.');\n  }\n  return (name: S) => {\n    const index = lookup.get(name);\n    if (index === undefined) {\n      throw Error('Invalid dimension.');\n    }\n    return index;\n  };\n}\n"],"mappings":"AAaA,OAAO,SAASA,SAASA,CAACC,QAA+C,EAAE;EACzE,OAAOA,QAAQ,CAACC,WAAW,CAAC,CAAC,CAACC,KAAK,CAAC,EAAE,CAAC,CAACC,OAAO,CAAC,CAAC;AACnD;AAWA,OAAO,SAASC,OAAOA,CAAmBC,MAAW,EAAE;EACrD,MAAMC,MAAM,GAAG,IAAIC,GAAG,CAACF,MAAM,CAACG,GAAG,CAAC,CAACC,IAAI,EAAEC,CAAC,KAAK,CAACD,IAAI,EAAEC,CAAC,CAAC,CAAC,CAAC;EAC1D,IAAIJ,MAAM,CAACK,IAAI,KAAKN,MAAM,CAACO,MAAM,EAAE;IACjC,MAAMC,KAAK,CAAC,gDAAgD,CAAC;EAC/D;EACA,OAAQJ,IAAO,IAAK;IAClB,MAAMK,KAAK,GAAGR,MAAM,CAACS,GAAG,CAACN,IAAI,CAAC;IAC9B,IAAIK,KAAK,KAAKE,SAAS,EAAE;MACvB,MAAMH,KAAK,CAAC,oBAAoB,CAAC;IACnC;IACA,OAAOC,KAAK;EACd,CAAC;AACH"}

package/dist/esm/lib/tiff-pixel-source.js

@@ -0,0 +1,92 @@
+import _defineProperty from "@babel/runtime/helpers/esm/defineProperty";
+import { getImageSize, isInterleaved, SIGNAL_ABORTED } from './utils/tiff-utils';
+class TiffPixelSource {
+  constructor(indexer, dtype, tileSize, shape, labels, meta) {
+    _defineProperty(this, "dtype", void 0);
+    _defineProperty(this, "tileSize", void 0);
+    _defineProperty(this, "shape", void 0);
+    _defineProperty(this, "labels", void 0);
+    _defineProperty(this, "meta", void 0);
+    _defineProperty(this, "_indexer", void 0);
+    this._indexer = indexer;
+    this.dtype = dtype;
+    this.tileSize = tileSize;
+    this.shape = shape;
+    this.labels = labels;
+    this.meta = meta;
+  }
+  async getRaster(_ref) {
+    let {
+      selection,
+      signal
+    } = _ref;
+    const image = await this._indexer(selection);
+    return this._readRasters(image, {
+      signal
+    });
+  }
+  async getTile(_ref2) {
+    let {
+      x,
+      y,
+      selection,
+      signal
+    } = _ref2;
+    const {
+      height,
+      width
+    } = this._getTileExtent(x, y);
+    const x0 = x * this.tileSize;
+    const y0 = y * this.tileSize;
+    const window = [x0, y0, x0 + width, y0 + height];
+    const image = await this._indexer(selection);
+    return this._readRasters(image, {
+      window,
+      width,
+      height,
+      signal
+    });
+  }
+  async _readRasters(image, props) {
+    var _props$signal;
+    const interleave = isInterleaved(this.shape);
+    const raster = await image.readRasters({
+      interleave,
+      ...props
+    });
+    if (props !== null && props !== void 0 && (_props$signal = props.signal) !== null && _props$signal !== void 0 && _props$signal.aborted) {
+      throw SIGNAL_ABORTED;
+    }
+    const data = interleave ? raster : raster[0];
+    return {
+      data,
+      width: raster.width,
+      height: raster.height
+    };
+  }
+  _getTileExtent(x, y) {
+    const {
+      height: zoomLevelHeight,
+      width: zoomLevelWidth
+    } = getImageSize(this);
+    let height = this.tileSize;
+    let width = this.tileSize;
+    const maxXTileCoord = Math.floor(zoomLevelWidth / this.tileSize);
+    const maxYTileCoord = Math.floor(zoomLevelHeight / this.tileSize);
+    if (x === maxXTileCoord) {
+      width = zoomLevelWidth % this.tileSize;
+    }
+    if (y === maxYTileCoord) {
+      height = zoomLevelHeight % this.tileSize;
+    }
+    return {
+      height,
+      width
+    };
+  }
+  onTileError(err) {
+    console.error(err);
+  }
+}
+export default TiffPixelSource;
+//# sourceMappingURL=tiff-pixel-source.js.map

package/dist/esm/lib/tiff-pixel-source.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"tiff-pixel-source.js","names":["getImageSize","isInterleaved","SIGNAL_ABORTED","TiffPixelSource","constructor","indexer","dtype","tileSize","shape","labels","meta","_defineProperty","_indexer","getRaster","_ref","selection","signal","image","_readRasters","getTile","_ref2","x","y","height","width","_getTileExtent","x0","y0","window","props","_props$signal","interleave","raster","readRasters","aborted","data","zoomLevelHeight","zoomLevelWidth","maxXTileCoord","Math","floor","maxYTileCoord","onTileError","err","console","error"],"sources":["../../../src/lib/tiff-pixel-source.ts"],"sourcesContent":["import type {GeoTIFFImage, RasterOptions} from 'geotiff';\nimport {getImageSize, isInterleaved, SIGNAL_ABORTED} from './utils/tiff-utils';\n\nimport type {\n  PixelSource,\n  PixelSourceSelection,\n  PixelSourceMeta,\n  Dtype,\n  Labels,\n  RasterSelection,\n  TileSelection,\n  PixelData,\n  TypedArray\n} from '../types';\n\nclass TiffPixelSource<S extends string[]> implements PixelSource<S> {\n  public dtype: Dtype;\n  public tileSize: number;\n  public shape: number[];\n  public labels: Labels<S>;\n  public meta: PixelSourceMeta | undefined;\n  private _indexer: (sel: PixelSourceSelection<S>) => Promise<GeoTIFFImage>;\n\n  // eslint-disable-next-line max-params\n  constructor(\n    indexer: (sel: PixelSourceSelection<S>) => Promise<GeoTIFFImage>,\n    dtype: Dtype,\n    tileSize: number,\n    shape: number[],\n    labels: Labels<S>,\n    meta?: PixelSourceMeta\n  ) {\n    this._indexer = indexer;\n    this.dtype = dtype;\n    this.tileSize = tileSize;\n    this.shape = shape;\n    this.labels = labels;\n    this.meta = meta;\n  }\n\n  async getRaster({selection, signal}: RasterSelection<S>) {\n    const image = await this._indexer(selection);\n    return this._readRasters(image, {signal});\n  }\n\n  async getTile({x, y, selection, signal}: TileSelection<S>) {\n    const {height, width} = this._getTileExtent(x, y);\n    const x0 = x * this.tileSize;\n    const y0 = y * this.tileSize;\n    const window = [x0, y0, x0 + width, y0 + height];\n\n    const image = await this._indexer(selection);\n    return this._readRasters(image, {window, width, height, signal});\n  }\n\n  private async _readRasters(image: GeoTIFFImage, props?: RasterOptions) {\n    const interleave = isInterleaved(this.shape);\n    const raster = await image.readRasters({interleave, ...props});\n\n    if (props?.signal?.aborted) {\n      throw SIGNAL_ABORTED;\n    }\n\n    /*\n     * geotiff.js returns objects with different structure\n     * depending on `interleave`. It's weird, but this seems to work.\n     */\n    const data = (interleave ? raster : raster[0]) as TypedArray;\n    return {\n      data,\n      width: raster.width,\n      height: raster.height\n    } as PixelData;\n  }\n\n  /*\n   * Computes tile size given x, y coord.\n   */\n  private _getTileExtent(x: number, y: number) {\n    const {height: zoomLevelHeight, width: zoomLevelWidth} = getImageSize(this);\n    let height = this.tileSize;\n    let width = this.tileSize;\n    const maxXTileCoord = Math.floor(zoomLevelWidth / this.tileSize);\n    const maxYTileCoord = Math.floor(zoomLevelHeight / this.tileSize);\n    if (x === maxXTileCoord) {\n      width = zoomLevelWidth % this.tileSize;\n    }\n    if (y === maxYTileCoord) {\n      height = zoomLevelHeight % this.tileSize;\n    }\n    return {height, width};\n  }\n\n  onTileError(err: Error) {\n    console.error(err); // eslint-disable-line no-console\n  }\n}\n\nexport default TiffPixelSource;\n"],"mappings":";AACA,SAAQA,YAAY,EAAEC,aAAa,EAAEC,cAAc,QAAO,oBAAoB;AAc9E,MAAMC,eAAe,CAA+C;EASlEC,WAAWA,CACTC,OAAgE,EAChEC,KAAY,EACZC,QAAgB,EAChBC,KAAe,EACfC,MAAiB,EACjBC,IAAsB,EACtB;IAAAC,eAAA;IAAAA,eAAA;IAAAA,eAAA;IAAAA,eAAA;IAAAA,eAAA;IAAAA,eAAA;IACA,IAAI,CAACC,QAAQ,GAAGP,OAAO;IACvB,IAAI,CAACC,KAAK,GAAGA,KAAK;IAClB,IAAI,CAACC,QAAQ,GAAGA,QAAQ;IACxB,IAAI,CAACC,KAAK,GAAGA,KAAK;IAClB,IAAI,CAACC,MAAM,GAAGA,MAAM;IACpB,IAAI,CAACC,IAAI,GAAGA,IAAI;EAClB;EAEA,MAAMG,SAASA,CAAAC,IAAA,EAA0C;IAAA,IAAzC;MAACC,SAAS;MAAEC;IAA0B,CAAC,GAAAF,IAAA;IACrD,MAAMG,KAAK,GAAG,MAAM,IAAI,CAACL,QAAQ,CAACG,SAAS,CAAC;IAC5C,OAAO,IAAI,CAACG,YAAY,CAACD,KAAK,EAAE;MAACD;IAAM,CAAC,CAAC;EAC3C;EAEA,MAAMG,OAAOA,CAAAC,KAAA,EAA8C;IAAA,IAA7C;MAACC,CAAC;MAAEC,CAAC;MAAEP,SAAS;MAAEC;IAAwB,CAAC,GAAAI,KAAA;IACvD,MAAM;MAACG,MAAM;MAAEC;IAAK,CAAC,GAAG,IAAI,CAACC,cAAc,CAACJ,CAAC,EAAEC,CAAC,CAAC;IACjD,MAAMI,EAAE,GAAGL,CAAC,GAAG,IAAI,CAACd,QAAQ;IAC5B,MAAMoB,EAAE,GAAGL,CAAC,GAAG,IAAI,CAACf,QAAQ;IAC5B,MAAMqB,MAAM,GAAG,CAACF,EAAE,EAAEC,EAAE,EAAED,EAAE,GAAGF,KAAK,EAAEG,EAAE,GAAGJ,MAAM,CAAC;IAEhD,MAAMN,KAAK,GAAG,MAAM,IAAI,CAACL,QAAQ,CAACG,SAAS,CAAC;IAC5C,OAAO,IAAI,CAACG,YAAY,CAACD,KAAK,EAAE;MAACW,MAAM;MAAEJ,KAAK;MAAED,MAAM;MAAEP;IAAM,CAAC,CAAC;EAClE;EAEA,MAAcE,YAAYA,CAACD,KAAmB,EAAEY,KAAqB,EAAE;IAAA,IAAAC,aAAA;IACrE,MAAMC,UAAU,GAAG9B,aAAa,CAAC,IAAI,CAACO,KAAK,CAAC;IAC5C,MAAMwB,MAAM,GAAG,MAAMf,KAAK,CAACgB,WAAW,CAAC;MAACF,UAAU;MAAE,GAAGF;IAAK,CAAC,CAAC;IAE9D,IAAIA,KAAK,aAALA,KAAK,gBAAAC,aAAA,GAALD,KAAK,CAAEb,MAAM,cAAAc,aAAA,eAAbA,aAAA,CAAeI,OAAO,EAAE;MAC1B,MAAMhC,cAAc;IACtB;IAMA,MAAMiC,IAAI,GAAIJ,UAAU,GAAGC,MAAM,GAAGA,MAAM,CAAC,CAAC,CAAgB;IAC5D,OAAO;MACLG,IAAI;MACJX,KAAK,EAAEQ,MAAM,CAACR,KAAK;MACnBD,MAAM,EAAES,MAAM,CAACT;IACjB,CAAC;EACH;EAKQE,cAAcA,CAACJ,CAAS,EAAEC,CAAS,EAAE;IAC3C,MAAM;MAACC,MAAM,EAAEa,eAAe;MAAEZ,KAAK,EAAEa;IAAc,CAAC,GAAGrC,YAAY,CAAC,IAAI,CAAC;IAC3E,IAAIuB,MAAM,GAAG,IAAI,CAAChB,QAAQ;IAC1B,IAAIiB,KAAK,GAAG,IAAI,CAACjB,QAAQ;IACzB,MAAM+B,aAAa,GAAGC,IAAI,CAACC,KAAK,CAACH,cAAc,GAAG,IAAI,CAAC9B,QAAQ,CAAC;IAChE,MAAMkC,aAAa,GAAGF,IAAI,CAACC,KAAK,CAACJ,eAAe,GAAG,IAAI,CAAC7B,QAAQ,CAAC;IACjE,IAAIc,CAAC,KAAKiB,aAAa,EAAE;MACvBd,KAAK,GAAGa,cAAc,GAAG,IAAI,CAAC9B,QAAQ;IACxC;IACA,IAAIe,CAAC,KAAKmB,aAAa,EAAE;MACvBlB,MAAM,GAAGa,eAAe,GAAG,IAAI,CAAC7B,QAAQ;IAC1C;IACA,OAAO;MAACgB,MAAM;MAAEC;IAAK,CAAC;EACxB;EAEAkB,WAAWA,CAACC,GAAU,EAAE;IACtBC,OAAO,CAACC,KAAK,CAACF,GAAG,CAAC;EACpB;AACF;AAEA,eAAexC,eAAe"}

package/dist/esm/lib/utils/Pool.js

@@ -0,0 +1,61 @@
+import _defineProperty from "@babel/runtime/helpers/esm/defineProperty";
+var _globalThis$navigator, _globalThis$navigator2;
+const defaultPoolSize = (_globalThis$navigator = globalThis === null || globalThis === void 0 ? void 0 : (_globalThis$navigator2 = globalThis.navigator) === null || _globalThis$navigator2 === void 0 ? void 0 : _globalThis$navigator2.hardwareConcurrency) !== null && _globalThis$navigator !== void 0 ? _globalThis$navigator : 4;
+export default class Pool {
+  constructor() {
+    let size = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : defaultPoolSize;
+    _defineProperty(this, "workers", void 0);
+    _defineProperty(this, "idleWorkers", void 0);
+    _defineProperty(this, "waitQueue", void 0);
+    _defineProperty(this, "decoder", void 0);
+    this.workers = [];
+    this.idleWorkers = [];
+    this.waitQueue = [];
+    this.decoder = null;
+    for (let i = 0; i < size; ++i) {
+      const w = new Worker('./decoder.worker');
+      this.workers.push(w);
+      this.idleWorkers.push(w);
+    }
+  }
+  async decode(fileDirectory, buffer) {
+    const currentWorker = await this.waitForWorker();
+    return new Promise((resolve, reject) => {
+      currentWorker.onmessage = event => {
+        this.finishTask(currentWorker);
+        resolve(event.data[0]);
+      };
+      currentWorker.onerror = error => {
+        this.finishTask(currentWorker);
+        reject(error);
+      };
+      currentWorker.postMessage(['decode', fileDirectory, buffer], [buffer]);
+    });
+  }
+  async waitForWorker() {
+    const idleWorker = this.idleWorkers.pop();
+    if (idleWorker) {
+      return idleWorker;
+    }
+    const waiter = {};
+    const promise = new Promise(resolve => {
+      waiter.resolve = resolve;
+    });
+    this.waitQueue.push(waiter);
+    return promise;
+  }
+  async finishTask(currentWorker) {
+    const waiter = this.waitQueue.pop();
+    if (waiter) {
+      waiter.resolve(currentWorker);
+    } else {
+      this.idleWorkers.push(currentWorker);
+    }
+  }
+  destroy() {
+    for (let i = 0; i < this.workers.length; ++i) {
+      this.workers[i].terminate();
+    }
+  }
+}
+//# sourceMappingURL=Pool.js.map

package/dist/esm/lib/utils/Pool.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Pool.js","names":["defaultPoolSize","_globalThis$navigator","globalThis","_globalThis$navigator2","navigator","hardwareConcurrency","Pool","constructor","size","arguments","length","undefined","_defineProperty","workers","idleWorkers","waitQueue","decoder","i","w","Worker","push","decode","fileDirectory","buffer","currentWorker","waitForWorker","Promise","resolve","reject","onmessage","event","finishTask","data","onerror","error","postMessage","idleWorker","pop","waiter","promise","destroy","terminate"],"sources":["../../../../src/lib/utils/Pool.ts"],"sourcesContent":["/** eslint-disable */\nimport type {FileDirectory} from 'geotiff';\n\n// import Worker from 'web-worker:./decoder.worker.ts';\n\n// https://developer.mozilla.org/en-US/docs/Web/API/NavigatorConcurrentHardware/hardwareConcurrency\n// We need to give a different way of getting this for safari, so 4 is probably a safe bet\n// for parallel processing in the meantime.  More can't really hurt since they'll just block\n// each other and not the UI thread, which is the real benefit.\nconst defaultPoolSize = globalThis?.navigator?.hardwareConcurrency ?? 4;\n\n/**\n * Pool for workers to decode chunks of the images.\n * This is a line-for-line copy of GeoTIFFs old implementation: https://github.com/geotiffjs/geotiff.js/blob/v1.0.0-beta.6/src/pool.js\n */\nexport default class Pool {\n  workers: Worker[];\n  idleWorkers: Worker[];\n  waitQueue: any[];\n  decoder: null;\n\n  /**\n   * @constructor\n   * @param {Number} size The size of the pool. Defaults to the number of CPUs\n   *                      available. When this parameter is `null` or 0, then the\n   *                      decoding will be done in the main thread.\n   */\n  constructor(size = defaultPoolSize) {\n    this.workers = [];\n    this.idleWorkers = [];\n    this.waitQueue = [];\n    this.decoder = null;\n\n    // eslint-disable-next-line no-plusplus\n    for (let i = 0; i < size; ++i) {\n      const w = new Worker('./decoder.worker');\n      this.workers.push(w);\n      this.idleWorkers.push(w);\n    }\n  }\n\n  /**\n   * Decode the given block of bytes with the set compression method.\n   * @param {ArrayBuffer} buffer the array buffer of bytes to decode.\n   * @returns {Promise.<ArrayBuffer>} the decoded result as a `Promise`\n   */\n  async decode(fileDirectory: FileDirectory, buffer: ArrayBuffer) {\n    const currentWorker = await this.waitForWorker();\n    return new Promise((resolve, reject) => {\n      currentWorker.onmessage = (event) => {\n        // this.workers.push(currentWorker);\n        // eslint-disable-next-line\n        this.finishTask(currentWorker);\n        resolve(event.data[0]);\n      };\n      currentWorker.onerror = (error) => {\n        // this.workers.push(currentWorker);\n        // eslint-disable-next-line\n        this.finishTask(currentWorker);\n        reject(error);\n      };\n      currentWorker.postMessage(['decode', fileDirectory, buffer], [buffer]);\n    });\n  }\n\n  async waitForWorker() {\n    const idleWorker = this.idleWorkers.pop();\n    if (idleWorker) {\n      return idleWorker;\n    }\n    const waiter: any = {};\n    const promise = new Promise((resolve) => {\n      waiter.resolve = resolve;\n    });\n\n    this.waitQueue.push(waiter);\n    return promise as Promise<Worker>;\n  }\n\n  async finishTask(currentWorker: Worker) {\n    const waiter = this.waitQueue.pop();\n    if (waiter) {\n      waiter.resolve(currentWorker);\n    } else {\n      this.idleWorkers.push(currentWorker);\n    }\n  }\n\n  destroy() {\n    // eslint-disable-next-line no-plusplus\n    for (let i = 0; i < this.workers.length; ++i) {\n      this.workers[i].terminate();\n    }\n  }\n}\n"],"mappings":";;AASA,MAAMA,eAAe,IAAAC,qBAAA,GAAGC,UAAU,aAAVA,UAAU,wBAAAC,sBAAA,GAAVD,UAAU,CAAEE,SAAS,cAAAD,sBAAA,uBAArBA,sBAAA,CAAuBE,mBAAmB,cAAAJ,qBAAA,cAAAA,qBAAA,GAAI,CAAC;AAMvE,eAAe,MAAMK,IAAI,CAAC;EAYxBC,WAAWA,CAAA,EAAyB;IAAA,IAAxBC,IAAI,GAAAC,SAAA,CAAAC,MAAA,QAAAD,SAAA,QAAAE,SAAA,GAAAF,SAAA,MAAGT,eAAe;IAAAY,eAAA;IAAAA,eAAA;IAAAA,eAAA;IAAAA,eAAA;IAChC,IAAI,CAACC,OAAO,GAAG,EAAE;IACjB,IAAI,CAACC,WAAW,GAAG,EAAE;IACrB,IAAI,CAACC,SAAS,GAAG,EAAE;IACnB,IAAI,CAACC,OAAO,GAAG,IAAI;IAGnB,KAAK,IAAIC,CAAC,GAAG,CAAC,EAAEA,CAAC,GAAGT,IAAI,EAAE,EAAES,CAAC,EAAE;MAC7B,MAAMC,CAAC,GAAG,IAAIC,MAAM,CAAC,kBAAkB,CAAC;MACxC,IAAI,CAACN,OAAO,CAACO,IAAI,CAACF,CAAC,CAAC;MACpB,IAAI,CAACJ,WAAW,CAACM,IAAI,CAACF,CAAC,CAAC;IAC1B;EACF;EAOA,MAAMG,MAAMA,CAACC,aAA4B,EAAEC,MAAmB,EAAE;IAC9D,MAAMC,aAAa,GAAG,MAAM,IAAI,CAACC,aAAa,CAAC,CAAC;IAChD,OAAO,IAAIC,OAAO,CAAC,CAACC,OAAO,EAAEC,MAAM,KAAK;MACtCJ,aAAa,CAACK,SAAS,GAAIC,KAAK,IAAK;QAGnC,IAAI,CAACC,UAAU,CAACP,aAAa,CAAC;QAC9BG,OAAO,CAACG,KAAK,CAACE,IAAI,CAAC,CAAC,CAAC,CAAC;MACxB,CAAC;MACDR,aAAa,CAACS,OAAO,GAAIC,KAAK,IAAK;QAGjC,IAAI,CAACH,UAAU,CAACP,aAAa,CAAC;QAC9BI,MAAM,CAACM,KAAK,CAAC;MACf,CAAC;MACDV,aAAa,CAACW,WAAW,CAAC,CAAC,QAAQ,EAAEb,aAAa,EAAEC,MAAM,CAAC,EAAE,CAACA,MAAM,CAAC,CAAC;IACxE,CAAC,CAAC;EACJ;EAEA,MAAME,aAAaA,CAAA,EAAG;IACpB,MAAMW,UAAU,GAAG,IAAI,CAACtB,WAAW,CAACuB,GAAG,CAAC,CAAC;IACzC,IAAID,UAAU,EAAE;MACd,OAAOA,UAAU;IACnB;IACA,MAAME,MAAW,GAAG,CAAC,CAAC;IACtB,MAAMC,OAAO,GAAG,IAAIb,OAAO,CAAEC,OAAO,IAAK;MACvCW,MAAM,CAACX,OAAO,GAAGA,OAAO;IAC1B,CAAC,CAAC;IAEF,IAAI,CAACZ,SAAS,CAACK,IAAI,CAACkB,MAAM,CAAC;IAC3B,OAAOC,OAAO;EAChB;EAEA,MAAMR,UAAUA,CAACP,aAAqB,EAAE;IACtC,MAAMc,MAAM,GAAG,IAAI,CAACvB,SAAS,CAACsB,GAAG,CAAC,CAAC;IACnC,IAAIC,MAAM,EAAE;MACVA,MAAM,CAACX,OAAO,CAACH,aAAa,CAAC;IAC/B,CAAC,MAAM;MACL,IAAI,CAACV,WAAW,CAACM,IAAI,CAACI,aAAa,CAAC;IACtC;EACF;EAEAgB,OAAOA,CAAA,EAAG;IAER,KAAK,IAAIvB,CAAC,GAAG,CAAC,EAAEA,CAAC,GAAG,IAAI,CAACJ,OAAO,CAACH,MAAM,EAAE,EAAEO,CAAC,EAAE;MAC5C,IAAI,CAACJ,OAAO,CAACI,CAAC,CAAC,CAACwB,SAAS,CAAC,CAAC;IAC7B;EACF;AACF"}

package/dist/esm/lib/utils/decoder.worker.ts.disabled

@@ -0,0 +1,21 @@
+import type { FileDirectory } from 'geotiff';
+import { getDecoder } from 'geotiff/src/compression';
+
+async function decode(fileDirectory: FileDirectory, buffer: ArrayBuffer) {
+  const decoder = getDecoder(fileDirectory);
+  const result = await decoder.decode(fileDirectory, buffer);
+  self.postMessage(result, [result] as any);
+}
+
+if (typeof self !== 'undefined') {
+  self.addEventListener('message', event => {
+    const [name, ...args] = event.data;
+    switch (name) {
+      case 'decode':
+        decode(args[0], args[1]);
+        break;
+      default:
+        break;
+    }
+  });
+}

package/dist/esm/lib/utils/proxies.js

@@ -0,0 +1,54 @@
+const VIV_PROXY_KEY = '__viv';
+const OFFSETS_PROXY_KEY = "".concat(VIV_PROXY_KEY, "-offsets");
+const POOL_PROXY_KEY = "".concat(VIV_PROXY_KEY, "-decoder-pool");
+export function checkProxies(tiff) {
+  if (!isProxy(tiff, OFFSETS_PROXY_KEY)) {
+    console.warn('GeoTIFF source is missing offsets proxy.');
+  }
+  if (!isProxy(tiff, POOL_PROXY_KEY)) {
+    console.warn('GeoTIFF source is missing decoder-pool proxy.');
+  }
+}
+function isProxy(tiff, proxyFlag) {
+  return tiff[proxyFlag];
+}
+export function createOffsetsProxy(tiff, offsets) {
+  const get = (target, key) => {
+    if (key === 'getImage') {
+      return index => {
+        if (!(index in target.ifdRequests) && index in offsets) {
+          const offset = offsets[index];
+          target.ifdRequests[index] = target.parseFileDirectoryAt(offset);
+        }
+        return target.getImage(index);
+      };
+    }
+    if (key === OFFSETS_PROXY_KEY) {
+      return true;
+    }
+    return Reflect.get(target, key);
+  };
+  return new Proxy(tiff, {
+    get
+  });
+}
+export function createPoolProxy(tiff, pool) {
+  const get = (target, key) => {
+    if (key === 'readRasters') {
+      return options => {
+        return target.readRasters({
+          ...options,
+          pool
+        });
+      };
+    }
+    if (key === POOL_PROXY_KEY) {
+      return true;
+    }
+    return Reflect.get(target, key);
+  };
+  return new Proxy(tiff, {
+    get
+  });
+}
+//# sourceMappingURL=proxies.js.map

package/dist/esm/lib/utils/proxies.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"proxies.js","names":["VIV_PROXY_KEY","OFFSETS_PROXY_KEY","concat","POOL_PROXY_KEY","checkProxies","tiff","isProxy","console","warn","proxyFlag","createOffsetsProxy","offsets","get","target","key","index","ifdRequests","offset","parseFileDirectoryAt","getImage","Reflect","Proxy","createPoolProxy","pool","options","readRasters"],"sources":["../../../../src/lib/utils/proxies.ts"],"sourcesContent":["import type {GeoTIFF} from 'geotiff';\nimport type Pool from './Pool';\n\nconst VIV_PROXY_KEY = '__viv';\nconst OFFSETS_PROXY_KEY = `${VIV_PROXY_KEY}-offsets` as const;\nconst POOL_PROXY_KEY = `${VIV_PROXY_KEY}-decoder-pool` as const;\n\n/*\n * Inspect if the GeoTIFF source is wrapped in our proxies,\n * and warn if missing.\n */\nexport function checkProxies(tiff: GeoTIFF) {\n  if (!isProxy(tiff, OFFSETS_PROXY_KEY)) {\n    console.warn('GeoTIFF source is missing offsets proxy.'); // eslint-disable-line no-console\n  }\n\n  if (!isProxy(tiff, POOL_PROXY_KEY)) {\n    console.warn('GeoTIFF source is missing decoder-pool proxy.'); // eslint-disable-line no-console\n  }\n}\n\n/*\n * > isProxy(tiff, POOL_PROXY_KEY) === true; // false\n * > tiff = createPoolProxy(tiff, new Pool());\n * > isProxy(tiff, POOL_PROXY_KEY) === true; // true\n */\nfunction isProxy(tiff: GeoTIFF, proxyFlag: string) {\n  return (tiff as any)[proxyFlag] as boolean;\n}\n\n/*\n * Creates an ES6 Proxy that wraps a GeoTIFF object. The proxy\n * handler intercepts calls to `tiff.getImage` and uses our custom\n * pre-computed offsets to pre-fetch the correct file directory.\n *\n * This is a bit of a hack. Internally GeoTIFF inspects `this.ifdRequests`\n * to see which fileDirectories need to be traversed. By adding the\n * ifdRequest for an 'index' manually, GeoTIFF will await that request\n * rather than traversing the file system remotely.\n */\nexport function createOffsetsProxy(tiff: GeoTIFF, offsets: number[]) {\n  const get = (target: GeoTIFF, key: any) => {\n    // Intercept `tiff.getImage`\n    if (key === 'getImage') {\n      return (index: number) => {\n        // Manually add ifdRequest to tiff if missing and we have an offset.\n        if (!(index in target.ifdRequests) && index in offsets) {\n          const offset = offsets[index];\n          target.ifdRequests[index] = target.parseFileDirectoryAt(offset);\n        }\n        return target.getImage(index);\n      };\n    }\n\n    // tiff['__viv-offsets'] === true\n    if (key === OFFSETS_PROXY_KEY) {\n      return true;\n    }\n\n    return Reflect.get(target, key);\n  };\n  return new Proxy(tiff, {get});\n}\n\n/*\n * Creates an ES6 Proxy that wraps a GeoTIFF object. The proxy\n * handler intercepts calls to `tiff.readRasters` and injects\n * a pool argument to every call. 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package/dist/esm/lib/utils/tiff-utils.js

@@ -0,0 +1,27 @@
+export function ensureArray(x) {
+  return Array.isArray(x) ? x : [x];
+}
+export function intToRgba(int) {
+  if (!Number.isInteger(int)) {
+    throw Error('Not an integer.');
+  }
+  const buffer = new ArrayBuffer(4);
+  const view = new DataView(buffer);
+  view.setInt32(0, int, false);
+  const bytes = new Uint8Array(buffer);
+  return Array.from(bytes);
+}
+export function isInterleaved(shape) {
+  const lastDimSize = shape[shape.length - 1];
+  return lastDimSize === 3 || lastDimSize === 4;
+}
+export function getImageSize(source) {
+  const interleaved = isInterleaved(source.shape);
+  const [height, width] = source.shape.slice(interleaved ? -3 : -2);
+  return {
+    height,
+    width
+  };
+}
+export const SIGNAL_ABORTED = '__vivSignalAborted';
+//# sourceMappingURL=tiff-utils.js.map

package/dist/esm/lib/utils/tiff-utils.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"tiff-utils.js","names":["ensureArray","x","Array","isArray","intToRgba","int","Number","isInteger","Error","buffer","ArrayBuffer","view","DataView","setInt32","bytes","Uint8Array","from","isInterleaved","shape","lastDimSize","length","getImageSize","source","interleaved","height","width","slice","SIGNAL_ABORTED"],"sources":["../../../../src/lib/utils/tiff-utils.ts"],"sourcesContent":["import type {PixelSource} from '../../types';\n\nexport function ensureArray<T>(x: T | T[]) {\n  return Array.isArray(x) ? x : [x];\n}\n\n/*\n * Converts 32-bit integer color representation to RGBA tuple.\n * Used to serialize colors from OME-XML metadata.\n *\n * > console.log(intToRgba(100100));\n * > // [0, 1, 135, 4]\n */\nexport function intToRgba(int: number) {\n  if (!Number.isInteger(int)) {\n    throw Error('Not an integer.');\n  }\n\n  // Write number to int32 representation (4 bytes).\n  const buffer = new ArrayBuffer(4);\n  const view = new DataView(buffer);\n  view.setInt32(0, int, false); // offset === 0, littleEndian === false\n\n  // Take u8 view and extract number for each byte (1 byte for R/G/B/A).\n  const bytes = new Uint8Array(buffer);\n  return Array.from(bytes) as [number, number, number, number];\n}\n\n/*\n * Helper method to determine whether pixel data is interleaved or not.\n * > isInterleaved([1, 24, 24]) === false;\n * > isInterleaved([1, 24, 24, 3]) === true;\n */\nexport function isInterleaved(shape: number[]) {\n  const lastDimSize = shape[shape.length - 1];\n  return lastDimSize === 3 || lastDimSize === 4;\n}\n\nexport function getImageSize<T extends string[]>(source: PixelSource<T>) {\n  const interleaved = isInterleaved(source.shape);\n  const [height, width] = source.shape.slice(interleaved ? -3 : -2);\n  return {height, width};\n}\n\nexport const SIGNAL_ABORTED = '__vivSignalAborted';\n"],"mappings":"AAEA,OAAO,SAASA,WAAWA,CAAIC,CAAU,EAAE;EACzC,OAAOC,KAAK,CAACC,OAAO,CAACF,CAAC,CAAC,GAAGA,CAAC,GAAG,CAACA,CAAC,CAAC;AACnC;AASA,OAAO,SAASG,SAASA,CAACC,GAAW,EAAE;EACrC,IAAI,CAACC,MAAM,CAACC,SAAS,CAACF,GAAG,CAAC,EAAE;IAC1B,MAAMG,KAAK,CAAC,iBAAiB,CAAC;EAChC;EAGA,MAAMC,MAAM,GAAG,IAAIC,WAAW,CAAC,CAAC,CAAC;EACjC,MAAMC,IAAI,GAAG,IAAIC,QAAQ,CAACH,MAAM,CAAC;EACjCE,IAAI,CAACE,QAAQ,CAAC,CAAC,EAAER,GAAG,EAAE,KAAK,CAAC;EAG5B,MAAMS,KAAK,GAAG,IAAIC,UAAU,CAACN,MAAM,CAAC;EACpC,OAAOP,KAAK,CAACc,IAAI,CAACF,KAAK,CAAC;AAC1B;AAOA,OAAO,SAASG,aAAaA,CAACC,KAAe,EAAE;EAC7C,MAAMC,WAAW,GAAGD,KAAK,CAACA,KAAK,CAACE,MAAM,GAAG,CAAC,CAAC;EAC3C,OAAOD,WAAW,KAAK,CAAC,IAAIA,WAAW,KAAK,CAAC;AAC/C;AAEA,OAAO,SAASE,YAAYA,CAAqBC,MAAsB,EAAE;EACvE,MAAMC,WAAW,GAAGN,aAAa,CAACK,MAAM,CAACJ,KAAK,CAAC;EAC/C,MAAM,CAACM,MAAM,EAAEC,KAAK,CAAC,GAAGH,MAAM,CAACJ,KAAK,CAACQ,KAAK,CAACH,WAAW,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;EACjE,OAAO;IAACC,MAAM;IAAEC;EAAK,CAAC;AACxB;AAEA,OAAO,MAAME,cAAc,GAAG,oBAAoB"}

package/dist/esm/types.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=types.js.map

package/dist/esm/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","names":[],"sources":["../../src/types.ts"],"sourcesContent":["import {DTYPE_LOOKUP} from './lib/ome/ome-utils';\n\nexport type Dtype = typeof DTYPE_LOOKUP[keyof typeof DTYPE_LOOKUP];\nexport type TypedArray = InstanceType<typeof globalThis[`${Dtype}Array`]>;\n\nexport interface PixelData {\n  data: TypedArray;\n  width: number;\n  height: number;\n}\n\nexport type PixelSourceSelection<S extends string[]> = {\n  [K in S[number]]: number;\n};\n\nexport interface RasterSelection<S extends string[]> {\n  selection: PixelSourceSelection<S>;\n  signal?: AbortSignal;\n}\n\nexport interface TileSelection<S extends string[]> {\n  x: number;\n  y: number;\n  selection: PixelSourceSelection<S>;\n  signal?: AbortSignal;\n}\n\ninterface PhysicalSize {\n  size: number;\n  unit: string;\n}\n\nexport interface PixelSourceMeta {\n  physicalSizes?: Record<string, PhysicalSize>;\n  photometricInterpretation?: number;\n}\n\nexport type Labels<S extends string[]> = [...S, 'y', 'x'] | [...S, 'y', 'x', '_c'];\n\n/**\n * Interface to load tiles from a data source\n */\nexport interface PixelSource<S extends string[]> {\n  /** Loads a 2D plane */\n  getRaster(sel: RasterSelection<S>): Promise<PixelData>;\n  /** Loads a tile */\n  getTile(sel: TileSelection<S>): Promise<PixelData>;\n  onTileError(err: Error): void;\n  shape: number[];\n  dtype: Dtype;\n  labels: Labels<S>;\n  tileSize: number;\n  meta?: PixelSourceMeta;\n}\n"],"mappings":""}