@loaders.gl/geotiff 3.4.13 → 3.4.15

package/dist/es5/lib/ome/ome-utils.js

@@ -1,14 +1,12 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.DTYPE_LOOKUP = void 0;
 exports.getOmePixelSourceMeta = getOmePixelSourceMeta;
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
 var _utils = require("./utils");
-var DTYPE_LOOKUP = {
+const DTYPE_LOOKUP = {
   uint8: 'Uint8',
   uint16: 'Uint16',
   uint32: 'Uint32',
@@ -20,10 +18,12 @@ var DTYPE_LOOKUP = {
 };
 exports.DTYPE_LOOKUP = DTYPE_LOOKUP;
 function getOmePixelSourceMeta(_ref) {
-  var Pixels = _ref.Pixels;
-  var labels = (0, _utils.getLabels)(Pixels.DimensionOrder);
-  var dims = (0, _utils.getDims)(labels);
-  var shape = Array(labels.length).fill(0);
+  let {
+    Pixels
+  } = _ref;
+  const labels = (0, _utils.getLabels)(Pixels.DimensionOrder);
+  const dims = (0, _utils.getDims)(labels);
+  const shape = Array(labels.length).fill(0);
   shape[dims('t')] = Pixels.SizeT;
   shape[dims('c')] = Pixels.SizeC;
   shape[dims('z')] = Pixels.SizeZ;
@@ -31,8 +31,8 @@ function getOmePixelSourceMeta(_ref) {
     labels.push('_c');
     shape.push(3);
   }
-  var getShape = function getShape(level) {
-    var s = (0, _toConsumableArray2.default)(shape);
+  const getShape = level => {
+    const s = [...shape];
     s[dims('x')] = Pixels.SizeX >> level;
     s[dims('y')] = Pixels.SizeY >> level;
     return s;
@@ -40,9 +40,9 @@ function getOmePixelSourceMeta(_ref) {
   if (!(Pixels.Type in DTYPE_LOOKUP)) {
     throw Error("Pixel type ".concat(Pixels.Type, " not supported."));
   }
-  var dtype = DTYPE_LOOKUP[Pixels.Type];
+  const dtype = DTYPE_LOOKUP[Pixels.Type];
   if (Pixels.PhysicalSizeX && Pixels.PhysicalSizeY) {
-    var physicalSizes = {
+    const physicalSizes = {
       x: {
         size: Pixels.PhysicalSizeX,
         unit: Pixels.PhysicalSizeXUnit
@@ -59,16 +59,16 @@ function getOmePixelSourceMeta(_ref) {
       };
     }
     return {
-      labels: labels,
-      getShape: getShape,
-      physicalSizes: physicalSizes,
-      dtype: dtype
+      labels,
+      getShape,
+      physicalSizes,
+      dtype
     };
   }
   return {
-    labels: labels,
-    getShape: getShape,
-    dtype: dtype
+    labels,
+    getShape,
+    dtype
   };
 }
 //# sourceMappingURL=ome-utils.js.map

package/dist/es5/lib/ome/ome-utils.js.map

@@ -1 +1 @@
-{"version":3,"file":"ome-utils.js","names":["_utils","require","DTYPE_LOOKUP","uint8","uint16","uint32","float","double","int8","int16","int32","exports","getOmePixelSourceMeta","_ref","Pixels","labels","getLabels","DimensionOrder","dims","getDims","shape","Array","length","fill","SizeT","SizeC","SizeZ","Interleaved","push","getShape","level","s","_toConsumableArray2","default","SizeX","SizeY","Type","Error","concat","dtype","PhysicalSizeX","PhysicalSizeY","physicalSizes","x","size","unit","PhysicalSizeXUnit","y","PhysicalSizeYUnit","PhysicalSizeZ","z","PhysicalSizeZUnit"],"sources":["../../../../src/lib/ome/ome-utils.ts"],"sourcesContent":["import {getDims, getLabels} from './utils';\nimport type {OMEXML, UnitsLength} from './omexml';\n\nexport const DTYPE_LOOKUP = {\n  uint8: 'Uint8',\n  uint16: 'Uint16',\n  uint32: 'Uint32',\n  float: 'Float32',\n  double: 'Float64',\n  int8: 'Int8',\n  int16: 'Int16',\n  int32: 'Int32'\n} as const;\n\nexport function getOmePixelSourceMeta({Pixels}: OMEXML[0]) {\n  // e.g. 'XYZCT' -> ['t', 'c', 'z', 'y', 'x']\n  const labels = getLabels(Pixels.DimensionOrder);\n\n  // Compute \"shape\" of image\n  const dims = getDims(labels);\n  const shape: number[] = Array(labels.length).fill(0);\n  shape[dims('t')] = Pixels.SizeT;\n  shape[dims('c')] = Pixels.SizeC;\n  shape[dims('z')] = Pixels.SizeZ;\n\n  // Push extra dimension if data are interleaved.\n  if (Pixels.Interleaved) {\n    // @ts-ignore\n    labels.push('_c');\n    shape.push(3);\n  }\n\n  // Creates a new shape for different level of pyramid.\n  // Assumes factor-of-two downsampling.\n  const getShape = (level: number) => {\n    const s = [...shape];\n    s[dims('x')] = Pixels.SizeX >> level;\n    s[dims('y')] = Pixels.SizeY >> level;\n    return s;\n  };\n\n  if (!(Pixels.Type in DTYPE_LOOKUP)) {\n    throw Error(`Pixel type ${Pixels.Type} not supported.`);\n  }\n\n  const dtype = DTYPE_LOOKUP[Pixels.Type as keyof typeof DTYPE_LOOKUP];\n  if (Pixels.PhysicalSizeX && Pixels.PhysicalSizeY) {\n    const physicalSizes: {\n      [k: string]: {size: number; unit: UnitsLength};\n    } = {\n      x: {\n        size: Pixels.PhysicalSizeX,\n        unit: Pixels.PhysicalSizeXUnit\n      },\n      y: {\n        size: Pixels.PhysicalSizeY,\n        unit: Pixels.PhysicalSizeYUnit\n      }\n    };\n    if (Pixels.PhysicalSizeZ) {\n      physicalSizes.z = {\n        size: Pixels.PhysicalSizeZ,\n        unit: Pixels.PhysicalSizeZUnit\n      };\n    }\n    return {labels, getShape, physicalSizes, dtype};\n  }\n\n  return {labels, getShape, dtype};\n}\n"],"mappings":";;;;;;;;;AAAA,IAAAA,MAAA,GAAAC,OAAA;AAGO,IAAMC,YAAY,GAAG;EAC1BC,KAAK,EAAE,OAAO;EACdC,MAAM,EAAE,QAAQ;EAChBC,MAAM,EAAE,QAAQ;EAChBC,KAAK,EAAE,SAAS;EAChBC,MAAM,EAAE,SAAS;EACjBC,IAAI,EAAE,MAAM;EACZC,KAAK,EAAE,OAAO;EACdC,KAAK,EAAE;AACT,CAAU;AAACC,OAAA,CAAAT,YAAA,GAAAA,YAAA;AAEJ,SAASU,qBAAqBA,CAAAC,IAAA,EAAsB;EAAA,IAApBC,MAAM,GAAAD,IAAA,CAANC,MAAM;EAE3C,IAAMC,MAAM,GAAG,IAAAC,gBAAS,EAACF,MAAM,CAACG,cAAc,CAAC;EAG/C,IAAMC,IAAI,GAAG,IAAAC,cAAO,EAACJ,MAAM,CAAC;EAC5B,IAAMK,KAAe,GAAGC,KAAK,CAACN,MAAM,CAACO,MAAM,CAAC,CAACC,IAAI,CAAC,CAAC,CAAC;EACpDH,KAAK,CAACF,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGJ,MAAM,CAACU,KAAK;EAC/BJ,KAAK,CAACF,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGJ,MAAM,CAACW,KAAK;EAC/BL,KAAK,CAACF,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGJ,MAAM,CAACY,KAAK;EAG/B,IAAIZ,MAAM,CAACa,WAAW,EAAE;IAEtBZ,MAAM,CAACa,IAAI,CAAC,IAAI,CAAC;IACjBR,KAAK,CAACQ,IAAI,CAAC,CAAC,CAAC;EACf;EAIA,IAAMC,QAAQ,GAAG,SAAXA,QAAQA,CAAIC,KAAa,EAAK;IAClC,IAAMC,CAAC,OAAAC,mBAAA,CAAAC,OAAA,EAAOb,KAAK,CAAC;IACpBW,CAAC,CAACb,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGJ,MAAM,CAACoB,KAAK,IAAIJ,KAAK;IACpCC,CAAC,CAACb,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGJ,MAAM,CAACqB,KAAK,IAAIL,KAAK;IACpC,OAAOC,CAAC;EACV,CAAC;EAED,IAAI,EAAEjB,MAAM,CAACsB,IAAI,IAAIlC,YAAY,CAAC,EAAE;IAClC,MAAMmC,KAAK,eAAAC,MAAA,CAAexB,MAAM,CAACsB,IAAI,oBAAiB,CAAC;EACzD;EAEA,IAAMG,KAAK,GAAGrC,YAAY,CAACY,MAAM,CAACsB,IAAI,CAA8B;EACpE,IAAItB,MAAM,CAAC0B,aAAa,IAAI1B,MAAM,CAAC2B,aAAa,EAAE;IAChD,IAAMC,aAEL,GAAG;MACFC,CAAC,EAAE;QACDC,IAAI,EAAE9B,MAAM,CAAC0B,aAAa;QAC1BK,IAAI,EAAE/B,MAAM,CAACgC;MACf,CAAC;MACDC,CAAC,EAAE;QACDH,IAAI,EAAE9B,MAAM,CAAC2B,aAAa;QAC1BI,IAAI,EAAE/B,MAAM,CAACkC;MACf;IACF,CAAC;IACD,IAAIlC,MAAM,CAACmC,aAAa,EAAE;MACxBP,aAAa,CAACQ,CAAC,GAAG;QAChBN,IAAI,EAAE9B,MAAM,CAACmC,aAAa;QAC1BJ,IAAI,EAAE/B,MAAM,CAACqC;MACf,CAAC;IACH;IACA,OAAO;MAACpC,MAAM,EAANA,MAAM;MAAEc,QAAQ,EAARA,QAAQ;MAAEa,aAAa,EAAbA,aAAa;MAAEH,KAAK,EAALA;IAAK,CAAC;EACjD;EAEA,OAAO;IAACxB,MAAM,EAANA,MAAM;IAAEc,QAAQ,EAARA,QAAQ;IAAEU,KAAK,EAALA;EAAK,CAAC;AAClC"}
+{"version":3,"file":"ome-utils.js","names":["_utils","require","DTYPE_LOOKUP","uint8","uint16","uint32","float","double","int8","int16","int32","exports","getOmePixelSourceMeta","_ref","Pixels","labels","getLabels","DimensionOrder","dims","getDims","shape","Array","length","fill","SizeT","SizeC","SizeZ","Interleaved","push","getShape","level","s","SizeX","SizeY","Type","Error","concat","dtype","PhysicalSizeX","PhysicalSizeY","physicalSizes","x","size","unit","PhysicalSizeXUnit","y","PhysicalSizeYUnit","PhysicalSizeZ","z","PhysicalSizeZUnit"],"sources":["../../../../src/lib/ome/ome-utils.ts"],"sourcesContent":["import {getDims, getLabels} from './utils';\nimport type {OMEXML, UnitsLength} from './omexml';\n\nexport const DTYPE_LOOKUP = {\n  uint8: 'Uint8',\n  uint16: 'Uint16',\n  uint32: 'Uint32',\n  float: 'Float32',\n  double: 'Float64',\n  int8: 'Int8',\n  int16: 'Int16',\n  int32: 'Int32'\n} as const;\n\nexport function getOmePixelSourceMeta({Pixels}: OMEXML[0]) {\n  // e.g. 'XYZCT' -> ['t', 'c', 'z', 'y', 'x']\n  const labels = getLabels(Pixels.DimensionOrder);\n\n  // Compute \"shape\" of image\n  const dims = getDims(labels);\n  const shape: number[] = Array(labels.length).fill(0);\n  shape[dims('t')] = Pixels.SizeT;\n  shape[dims('c')] = Pixels.SizeC;\n  shape[dims('z')] = Pixels.SizeZ;\n\n  // Push extra dimension if data are interleaved.\n  if (Pixels.Interleaved) {\n    // @ts-ignore\n    labels.push('_c');\n    shape.push(3);\n  }\n\n  // Creates a new shape for different level of pyramid.\n  // Assumes factor-of-two downsampling.\n  const getShape = (level: number) => {\n    const s = [...shape];\n    s[dims('x')] = Pixels.SizeX >> level;\n    s[dims('y')] = Pixels.SizeY >> level;\n    return s;\n  };\n\n  if (!(Pixels.Type in DTYPE_LOOKUP)) {\n    throw Error(`Pixel type ${Pixels.Type} not supported.`);\n  }\n\n  const dtype = DTYPE_LOOKUP[Pixels.Type as keyof typeof DTYPE_LOOKUP];\n  if (Pixels.PhysicalSizeX && Pixels.PhysicalSizeY) {\n    const physicalSizes: {\n      [k: string]: {size: number; unit: UnitsLength};\n    } = {\n      x: {\n        size: Pixels.PhysicalSizeX,\n        unit: Pixels.PhysicalSizeXUnit\n      },\n      y: {\n        size: Pixels.PhysicalSizeY,\n        unit: Pixels.PhysicalSizeYUnit\n      }\n    };\n    if (Pixels.PhysicalSizeZ) {\n      physicalSizes.z = {\n        size: Pixels.PhysicalSizeZ,\n        unit: Pixels.PhysicalSizeZUnit\n      };\n    }\n    return {labels, getShape, physicalSizes, dtype};\n  }\n\n  return {labels, getShape, dtype};\n}\n"],"mappings":";;;;;;;AAAA,IAAAA,MAAA,GAAAC,OAAA;AAGO,MAAMC,YAAY,GAAG;EAC1BC,KAAK,EAAE,OAAO;EACdC,MAAM,EAAE,QAAQ;EAChBC,MAAM,EAAE,QAAQ;EAChBC,KAAK,EAAE,SAAS;EAChBC,MAAM,EAAE,SAAS;EACjBC,IAAI,EAAE,MAAM;EACZC,KAAK,EAAE,OAAO;EACdC,KAAK,EAAE;AACT,CAAU;AAACC,OAAA,CAAAT,YAAA,GAAAA,YAAA;AAEJ,SAASU,qBAAqBA,CAAAC,IAAA,EAAsB;EAAA,IAArB;IAACC;EAAiB,CAAC,GAAAD,IAAA;EAEvD,MAAME,MAAM,GAAG,IAAAC,gBAAS,EAACF,MAAM,CAACG,cAAc,CAAC;EAG/C,MAAMC,IAAI,GAAG,IAAAC,cAAO,EAACJ,MAAM,CAAC;EAC5B,MAAMK,KAAe,GAAGC,KAAK,CAACN,MAAM,CAACO,MAAM,CAAC,CAACC,IAAI,CAAC,CAAC,CAAC;EACpDH,KAAK,CAACF,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGJ,MAAM,CAACU,KAAK;EAC/BJ,KAAK,CAACF,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGJ,MAAM,CAACW,KAAK;EAC/BL,KAAK,CAACF,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGJ,MAAM,CAACY,KAAK;EAG/B,IAAIZ,MAAM,CAACa,WAAW,EAAE;IAEtBZ,MAAM,CAACa,IAAI,CAAC,IAAI,CAAC;IACjBR,KAAK,CAACQ,IAAI,CAAC,CAAC,CAAC;EACf;EAIA,MAAMC,QAAQ,GAAIC,KAAa,IAAK;IAClC,MAAMC,CAAC,GAAG,CAAC,GAAGX,KAAK,CAAC;IACpBW,CAAC,CAACb,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGJ,MAAM,CAACkB,KAAK,IAAIF,KAAK;IACpCC,CAAC,CAACb,IAAI,CAAC,GAAG,CAAC,CAAC,GAAGJ,MAAM,CAACmB,KAAK,IAAIH,KAAK;IACpC,OAAOC,CAAC;EACV,CAAC;EAED,IAAI,EAAEjB,MAAM,CAACoB,IAAI,IAAIhC,YAAY,CAAC,EAAE;IAClC,MAAMiC,KAAK,eAAAC,MAAA,CAAetB,MAAM,CAACoB,IAAI,oBAAiB,CAAC;EACzD;EAEA,MAAMG,KAAK,GAAGnC,YAAY,CAACY,MAAM,CAACoB,IAAI,CAA8B;EACpE,IAAIpB,MAAM,CAACwB,aAAa,IAAIxB,MAAM,CAACyB,aAAa,EAAE;IAChD,MAAMC,aAEL,GAAG;MACFC,CAAC,EAAE;QACDC,IAAI,EAAE5B,MAAM,CAACwB,aAAa;QAC1BK,IAAI,EAAE7B,MAAM,CAAC8B;MACf,CAAC;MACDC,CAAC,EAAE;QACDH,IAAI,EAAE5B,MAAM,CAACyB,aAAa;QAC1BI,IAAI,EAAE7B,MAAM,CAACgC;MACf;IACF,CAAC;IACD,IAAIhC,MAAM,CAACiC,aAAa,EAAE;MACxBP,aAAa,CAACQ,CAAC,GAAG;QAChBN,IAAI,EAAE5B,MAAM,CAACiC,aAAa;QAC1BJ,IAAI,EAAE7B,MAAM,CAACmC;MACf,CAAC;IACH;IACA,OAAO;MAAClC,MAAM;MAAEc,QAAQ;MAAEW,aAAa;MAAEH;IAAK,CAAC;EACjD;EAEA,OAAO;IAACtB,MAAM;IAAEc,QAAQ;IAAEQ;EAAK,CAAC;AAClC"}

package/dist/es5/lib/ome/omexml.js

@@ -1,56 +1,58 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.fromString = fromString;
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 var _fastXmlParser = require("fast-xml-parser");
 var _tiffUtils = require("../utils/tiff-utils");
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-var xmlParser = new _fastXmlParser.XMLParser({
+const xmlParser = new _fastXmlParser.XMLParser({
   attributeNamePrefix: '',
   attributesGroupName: 'attr',
   parseTagValue: true,
   parseAttributeValue: true,
   ignoreAttributes: false
 });
-var parse = function parse(str) {
-  return xmlParser.parse(str);
-};
+const parse = str => xmlParser.parse(str);
 function fromString(str) {
-  var res = parse(str);
+  const res = parse(str);
   if (!res.OME) {
     throw Error('Failed to parse OME-XML metadata.');
   }
-  return (0, _tiffUtils.ensureArray)(res.OME.Image).map(function (img) {
-    var Channels = (0, _tiffUtils.ensureArray)(img.Pixels.Channel).map(function (c) {
+  return (0, _tiffUtils.ensureArray)(res.OME.Image).map(img => {
+    const Channels = (0, _tiffUtils.ensureArray)(img.Pixels.Channel).map(c => {
       if ('Color' in c.attr) {
-        return _objectSpread(_objectSpread({}, c.attr), {}, {
+        return {
+          ...c.attr,
           Color: (0, _tiffUtils.intToRgba)(c.attr.Color)
-        });
+        };
       }
-      return _objectSpread({}, c.attr);
-    });
-    var _img$AquisitionDate = img.AquisitionDate,
-      AquisitionDate = _img$AquisitionDate === void 0 ? '' : _img$AquisitionDate,
-      _img$Description = img.Description,
-      Description = _img$Description === void 0 ? '' : _img$Description;
-    var image = _objectSpread(_objectSpread({}, img.attr), {}, {
-      AquisitionDate: AquisitionDate,
-      Description: Description,
-      Pixels: _objectSpread(_objectSpread({}, img.Pixels.attr), {}, {
-        Channels: Channels
-      })
+      return {
+        ...c.attr
+      };
     });
-    return _objectSpread(_objectSpread({}, image), {}, {
-      format: function format() {
-        var Pixels = image.Pixels;
-        var sizes = ['X', 'Y', 'Z'].map(function (name) {
-          var size = Pixels["PhysicalSize".concat(name)];
-          var unit = Pixels["PhysicalSize".concat(name, "Unit")];
+    const {
+      AquisitionDate = '',
+      Description = ''
+    } = img;
+    const image = {
+      ...img.attr,
+      AquisitionDate,
+      Description,
+      Pixels: {
+        ...img.Pixels.attr,
+        Channels
+      }
+    };
+    return {
+      ...image,
+      format() {
+        const {
+          Pixels
+        } = image;
+        const sizes = ['X', 'Y', 'Z'].map(name => {
+          const size = Pixels["PhysicalSize".concat(name)];
+          const unit = Pixels["PhysicalSize".concat(name, "Unit")];
           return size && unit ? "".concat(size, " ").concat(unit) : '-';
         }).join(' x ');
         return {
@@ -62,7 +64,7 @@ function fromString(str) {
           Channels: Pixels.SizeC
         };
       }
-    });
+    };
   });
 }
 //# sourceMappingURL=omexml.js.map

package/dist/es5/lib/ome/omexml.js.map

@@ -1 +1 @@
-{"version":3,"file":"omexml.js","names":["_fastXmlParser","require","_tiffUtils","ownKeys","object","enumerableOnly","keys","Object","getOwnPropertySymbols","symbols","filter","sym","getOwnPropertyDescriptor","enumerable","push","apply","_objectSpread","target","i","arguments","length","source","forEach","key","_defineProperty2","default","getOwnPropertyDescriptors","defineProperties","defineProperty","xmlParser","XMLParser","attributeNamePrefix","attributesGroupName","parseTagValue","parseAttributeValue","ignoreAttributes","parse","str","fromString","res","OME","Error","ensureArray","Image","map","img","Channels","Pixels","Channel","c","attr","Color","intToRgba","_img$AquisitionDate","AquisitionDate","_img$Description","Description","image","format","sizes","name","size","concat","unit","join","SizeX","SizeY","Type","SizeZ","SizeT","SizeC"],"sources":["../../../../src/lib/ome/omexml.ts"],"sourcesContent":["import {XMLParser} from 'fast-xml-parser';\nimport {ensureArray, intToRgba} from '../utils/tiff-utils';\n\n// WARNING: Changes to the parser options _will_ effect the types in types/omexml.d.ts.\nconst xmlParser = new XMLParser({\n  // Nests attributes withtout prefix under 'attr' key for each node\n  attributeNamePrefix: '',\n  attributesGroupName: 'attr',\n\n  // Parses numbers for both attributes and nodes\n  parseTagValue: true,\n  parseAttributeValue: true,\n\n  // Forces attributes to be parsed\n  ignoreAttributes: false\n});\n\nconst parse = (str: string): Root => xmlParser.parse(str);\n\nexport function fromString(str: string) {\n  const res = parse(str);\n  if (!res.OME) {\n    throw Error('Failed to parse OME-XML metadata.');\n  }\n  return ensureArray(res.OME.Image).map((img) => {\n    const Channels = ensureArray(img.Pixels.Channel).map((c) => {\n      if ('Color' in c.attr) {\n        return {...c.attr, Color: intToRgba(c.attr.Color)};\n      }\n      return {...c.attr};\n    });\n    const {AquisitionDate = '', Description = ''} = img;\n    const image = {\n      ...img.attr,\n      AquisitionDate,\n      Description,\n      Pixels: {\n        ...img.Pixels.attr,\n        Channels\n      }\n    };\n    return {\n      ...image,\n      format() {\n        const {Pixels} = image;\n\n        const sizes = (['X', 'Y', 'Z'] as const)\n          .map((name) => {\n            const size = Pixels[`PhysicalSize${name}` as const];\n            const unit = Pixels[`PhysicalSize${name}Unit` as const];\n            return size && unit ? `${size} ${unit}` : '-';\n          })\n          .join(' x ');\n\n        return {\n          'Acquisition Date': image.AquisitionDate,\n          'Dimensions (XY)': `${Pixels.SizeX} x ${Pixels.SizeY}`,\n          'Pixels Type': Pixels.Type,\n          'Pixels Size (XYZ)': sizes,\n          'Z-sections/Timepoints': `${Pixels.SizeZ} x ${Pixels.SizeT}`,\n          Channels: Pixels.SizeC\n        };\n      }\n    };\n  });\n}\n\nexport type OMEXML = ReturnType<typeof fromString>;\nexport type DimensionOrder = 'XYZCT' | 'XYZTC' | 'XYCTZ' | 'XYCZT' | 'XYTCZ' | 'XYTZC';\n\n// Structure of node is determined by the PARSER_OPTIONS.\ntype Node<T, A> = T & {attr: A};\ntype Attrs<Fields extends string, T = string> = {[K in Fields]: T};\n\ntype OMEAttrs = Attrs<'xmlns' | 'xmlns:xsi' | 'xsi:schemaLocation'>;\ntype OME = Node<{Insturment: Insturment; Image: Image | Image[]}, OMEAttrs>;\n\ntype Insturment = Node<\n  {Objective: Node<{}, Attrs<'ID' | 'Model' | 'NominalMagnification'>>},\n  Attrs<'ID'>\n>;\n\ninterface ImageNodes {\n  AquisitionDate?: string;\n  Description?: string;\n  Pixels: Pixels;\n  InstrumentRef: Node<{}, {ID: string}>;\n  ObjectiveSettings: Node<{}, {ID: string}>;\n}\ntype Image = Node<ImageNodes, Attrs<'ID' | 'Name'>>;\n\ntype PixelType =\n  | 'int8'\n  | 'int16'\n  | 'int32'\n  | 'uint8'\n  | 'uint16'\n  | 'uint32'\n  | 'float'\n  | 'bit'\n  | 'double'\n  | 'complex'\n  | 'double-complex';\n\nexport type UnitsLength =\n  | 'Ym'\n  | 'Zm'\n  | 'Em'\n  | 'Pm'\n  | 'Tm'\n  | 'Gm'\n  | 'Mm'\n  | 'km'\n  | 'hm'\n  | 'dam'\n  | 'm'\n  | 'dm'\n  | 'cm'\n  | 'mm'\n  | 'µm'\n  | 'nm'\n  | 'pm'\n  | 'fm'\n  | 'am'\n  | 'zm'\n  | 'ym'\n  | 'Å'\n  | 'thou'\n  | 'li'\n  | 'in'\n  | 'ft'\n  | 'yd'\n  | 'mi'\n  | 'ua'\n  | 'ly'\n  | 'pc'\n  | 'pt'\n  | 'pixel'\n  | 'reference frame';\n\ntype PhysicalSize<Name extends string> = `PhysicalSize${Name}`;\ntype PhysicalSizeUnit<Name extends string> = `PhysicalSize${Name}Unit`;\ntype Size<Names extends string> = `Size${Names}`;\n\ntype PixelAttrs = Attrs<\n  PhysicalSize<'X' | 'Y' | 'Z'> | 'SignificantBits' | Size<'T' | 'C' | 'Z' | 'Y' | 'X'>,\n  number\n> &\n  Attrs<PhysicalSizeUnit<'X' | 'Y' | 'Z'>, UnitsLength> &\n  Attrs<'BigEndian' | 'Interleaved', boolean> & {\n    ID: string;\n    DimensionOrder: DimensionOrder;\n    Type: PixelType;\n  };\n\ntype Pixels = Node<\n  {\n    Channel: Channel | Channel[];\n    TiffData: Node<{}, Attrs<'IFD' | 'PlaneCount'>>;\n  },\n  PixelAttrs\n>;\n\ntype ChannelAttrs =\n  | {\n      ID: string;\n      SamplesPerPixel: number;\n      Name?: string;\n    }\n  | {\n      ID: string;\n      SamplesPerPixel: number;\n      Name?: string;\n      Color: number;\n    };\n\ntype Channel = Node<{}, ChannelAttrs>;\n\ntype Root = {OME: OME};\n"],"mappings":";;;;;;;;AAAA,IAAAA,cAAA,GAAAC,OAAA;AACA,IAAAC,UAAA,GAAAD,OAAA;AAA2D,SAAAE,QAAAC,MAAA,EAAAC,cAAA,QAAAC,IAAA,GAAAC,MAAA,CAAAD,IAAA,CAAAF,MAAA,OAAAG,MAAA,CAAAC,qBAAA,QAAAC,OAAA,GAAAF,MAAA,CAAAC,qBAAA,CAAAJ,MAAA,GAAAC,cAAA,KAAAI,OAAA,GAAAA,OAAA,CAAAC,MAAA,WAAAC,GAAA,WAAAJ,MAAA,CAAAK,wBAAA,CAAAR,MAAA,EAAAO,GAAA,EAAAE,UAAA,OAAAP,IAAA,CAAAQ,IAAA,CAAAC,KAAA,CAAAT,IAAA,EAAAG,OAAA,YAAAH,IAAA;AAAA,SAAAU,cAAAC,MAAA,aAAAC,CAAA,MAAAA,CAAA,GAAAC,SAAA,CAAAC,MAAA,EAAAF,CAAA,UAAAG,MAAA,WAAAF,SAAA,CAAAD,CAAA,IAAAC,SAAA,CAAAD,CAAA,QAAAA,CAAA,OAAAf,OAAA,CAAAI,MAAA,CAAAc,MAAA,OAAAC,OAAA,WAAAC,GAAA,QAAAC,gBAAA,CAAAC,OAAA,EAAAR,MAAA,EAAAM,GAAA,EAAAF,MAAA,CAAAE,GAAA,SAAAhB,MAAA,CAAAmB,yBAAA,GAAAnB,MAAA,CAAAoB,gBAAA,CAAAV,MAAA,EAAAV,MAAA,CAAAmB,yBAAA,CAAAL,MAAA,KAAAlB,OAAA,CAAAI,MAAA,CAAAc,MAAA,GAAAC,OAAA,WAAAC,GAAA,IAAAhB,MAAA,CAAAqB,cAAA,CAAAX,MAAA,EAAAM,GAAA,EAAAhB,MAAA,CAAAK,wBAAA,CAAAS,MAAA,EAAAE,GAAA,iBAAAN,MAAA;AAG3D,IAAMY,SAAS,GAAG,IAAIC,wBAAS,CAAC;EAE9BC,mBAAmB,EAAE,EAAE;EACvBC,mBAAmB,EAAE,MAAM;EAG3BC,aAAa,EAAE,IAAI;EACnBC,mBAAmB,EAAE,IAAI;EAGzBC,gBAAgB,EAAE;AACpB,CAAC,CAAC;AAEF,IAAMC,KAAK,GAAG,SAARA,KAAKA,CAAIC,GAAW;EAAA,OAAWR,SAAS,CAACO,KAAK,CAACC,GAAG,CAAC;AAAA;AAElD,SAASC,UAAUA,CAACD,GAAW,EAAE;EACtC,IAAME,GAAG,GAAGH,KAAK,CAACC,GAAG,CAAC;EACtB,IAAI,CAACE,GAAG,CAACC,GAAG,EAAE;IACZ,MAAMC,KAAK,CAAC,mCAAmC,CAAC;EAClD;EACA,OAAO,IAAAC,sBAAW,EAACH,GAAG,CAACC,GAAG,CAACG,KAAK,CAAC,CAACC,GAAG,CAAC,UAACC,GAAG,EAAK;IAC7C,IAAMC,QAAQ,GAAG,IAAAJ,sBAAW,EAACG,GAAG,CAACE,MAAM,CAACC,OAAO,CAAC,CAACJ,GAAG,CAAC,UAACK,CAAC,EAAK;MAC1D,IAAI,OAAO,IAAIA,CAAC,CAACC,IAAI,EAAE;QACrB,OAAAlC,aAAA,CAAAA,aAAA,KAAWiC,CAAC,CAACC,IAAI;UAAEC,KAAK,EAAE,IAAAC,oBAAS,EAACH,CAAC,CAACC,IAAI,CAACC,KAAK;QAAC;MACnD;MACA,OAAAnC,aAAA,KAAWiC,CAAC,CAACC,IAAI;IACnB,CAAC,CAAC;IACF,IAAAG,mBAAA,GAAgDR,GAAG,CAA5CS,cAAc;MAAdA,cAAc,GAAAD,mBAAA,cAAG,EAAE,GAAAA,mBAAA;MAAAE,gBAAA,GAAsBV,GAAG,CAAvBW,WAAW;MAAXA,WAAW,GAAAD,gBAAA,cAAG,EAAE,GAAAA,gBAAA;IAC5C,IAAME,KAAK,GAAAzC,aAAA,CAAAA,aAAA,KACN6B,GAAG,CAACK,IAAI;MACXI,cAAc,EAAdA,cAAc;MACdE,WAAW,EAAXA,WAAW;MACXT,MAAM,EAAA/B,aAAA,CAAAA,aAAA,KACD6B,GAAG,CAACE,MAAM,CAACG,IAAI;QAClBJ,QAAQ,EAARA;MAAQ;IACT,EACF;IACD,OAAA9B,aAAA,CAAAA,aAAA,KACKyC,KAAK;MACRC,MAAM,WAAAA,OAAA,EAAG;QACP,IAAOX,MAAM,GAAIU,KAAK,CAAfV,MAAM;QAEb,IAAMY,KAAK,GAAI,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAC3Bf,GAAG,CAAC,UAACgB,IAAI,EAAK;UACb,IAAMC,IAAI,GAAGd,MAAM,gBAAAe,MAAA,CAAgBF,IAAI,EAAY;UACnD,IAAMG,IAAI,GAAGhB,MAAM,gBAAAe,MAAA,CAAgBF,IAAI,UAAgB;UACvD,OAAOC,IAAI,IAAIE,IAAI,MAAAD,MAAA,CAAMD,IAAI,OAAAC,MAAA,CAAIC,IAAI,IAAK,GAAG;QAC/C,CAAC,CAAC,CACDC,IAAI,CAAC,KAAK,CAAC;QAEd,OAAO;UACL,kBAAkB,EAAEP,KAAK,CAACH,cAAc;UACxC,iBAAiB,KAAAQ,MAAA,CAAKf,MAAM,CAACkB,KAAK,SAAAH,MAAA,CAAMf,MAAM,CAACmB,KAAK,CAAE;UACtD,aAAa,EAAEnB,MAAM,CAACoB,IAAI;UAC1B,mBAAmB,EAAER,KAAK;UAC1B,uBAAuB,KAAAG,MAAA,CAAKf,MAAM,CAACqB,KAAK,SAAAN,MAAA,CAAMf,MAAM,CAACsB,KAAK,CAAE;UAC5DvB,QAAQ,EAAEC,MAAM,CAACuB;QACnB,CAAC;MACH;IAAC;EAEL,CAAC,CAAC;AACJ"}
+{"version":3,"file":"omexml.js","names":["_fastXmlParser","require","_tiffUtils","xmlParser","XMLParser","attributeNamePrefix","attributesGroupName","parseTagValue","parseAttributeValue","ignoreAttributes","parse","str","fromString","res","OME","Error","ensureArray","Image","map","img","Channels","Pixels","Channel","c","attr","Color","intToRgba","AquisitionDate","Description","image","format","sizes","name","size","concat","unit","join","SizeX","SizeY","Type","SizeZ","SizeT","SizeC"],"sources":["../../../../src/lib/ome/omexml.ts"],"sourcesContent":["import {XMLParser} from 'fast-xml-parser';\nimport {ensureArray, intToRgba} from '../utils/tiff-utils';\n\n// WARNING: Changes to the parser options _will_ effect the types in types/omexml.d.ts.\nconst xmlParser = new XMLParser({\n  // Nests attributes withtout prefix under 'attr' key for each node\n  attributeNamePrefix: '',\n  attributesGroupName: 'attr',\n\n  // Parses numbers for both attributes and nodes\n  parseTagValue: true,\n  parseAttributeValue: true,\n\n  // Forces attributes to be parsed\n  ignoreAttributes: false\n});\n\nconst parse = (str: string): Root => xmlParser.parse(str);\n\nexport function fromString(str: string) {\n  const res = parse(str);\n  if (!res.OME) {\n    throw Error('Failed to parse OME-XML metadata.');\n  }\n  return ensureArray(res.OME.Image).map((img) => {\n    const Channels = ensureArray(img.Pixels.Channel).map((c) => {\n      if ('Color' in c.attr) {\n        return {...c.attr, Color: intToRgba(c.attr.Color)};\n      }\n      return {...c.attr};\n    });\n    const {AquisitionDate = '', Description = ''} = img;\n    const image = {\n      ...img.attr,\n      AquisitionDate,\n      Description,\n      Pixels: {\n        ...img.Pixels.attr,\n        Channels\n      }\n    };\n    return {\n      ...image,\n      format() {\n        const {Pixels} = image;\n\n        const sizes = (['X', 'Y', 'Z'] as const)\n          .map((name) => {\n            const size = Pixels[`PhysicalSize${name}` as const];\n            const unit = Pixels[`PhysicalSize${name}Unit` as const];\n            return size && unit ? `${size} ${unit}` : '-';\n          })\n          .join(' x ');\n\n        return {\n          'Acquisition Date': image.AquisitionDate,\n          'Dimensions (XY)': `${Pixels.SizeX} x ${Pixels.SizeY}`,\n          'Pixels Type': Pixels.Type,\n          'Pixels Size (XYZ)': sizes,\n          'Z-sections/Timepoints': `${Pixels.SizeZ} x ${Pixels.SizeT}`,\n          Channels: Pixels.SizeC\n        };\n      }\n    };\n  });\n}\n\nexport type OMEXML = ReturnType<typeof fromString>;\nexport type DimensionOrder = 'XYZCT' | 'XYZTC' | 'XYCTZ' | 'XYCZT' | 'XYTCZ' | 'XYTZC';\n\n// Structure of node is determined by the PARSER_OPTIONS.\ntype Node<T, A> = T & {attr: A};\ntype Attrs<Fields extends string, T = string> = {[K in Fields]: T};\n\ntype OMEAttrs = Attrs<'xmlns' | 'xmlns:xsi' | 'xsi:schemaLocation'>;\ntype OME = Node<{Insturment: Insturment; Image: Image | Image[]}, OMEAttrs>;\n\ntype Insturment = Node<\n  {Objective: Node<{}, Attrs<'ID' | 'Model' | 'NominalMagnification'>>},\n  Attrs<'ID'>\n>;\n\ninterface ImageNodes {\n  AquisitionDate?: string;\n  Description?: string;\n  Pixels: Pixels;\n  InstrumentRef: Node<{}, {ID: string}>;\n  ObjectiveSettings: Node<{}, {ID: string}>;\n}\ntype Image = Node<ImageNodes, Attrs<'ID' | 'Name'>>;\n\ntype PixelType =\n  | 'int8'\n  | 'int16'\n  | 'int32'\n  | 'uint8'\n  | 'uint16'\n  | 'uint32'\n  | 'float'\n  | 'bit'\n  | 'double'\n  | 'complex'\n  | 'double-complex';\n\nexport type UnitsLength =\n  | 'Ym'\n  | 'Zm'\n  | 'Em'\n  | 'Pm'\n  | 'Tm'\n  | 'Gm'\n  | 'Mm'\n  | 'km'\n  | 'hm'\n  | 'dam'\n  | 'm'\n  | 'dm'\n  | 'cm'\n  | 'mm'\n  | 'µm'\n  | 'nm'\n  | 'pm'\n  | 'fm'\n  | 'am'\n  | 'zm'\n  | 'ym'\n  | 'Å'\n  | 'thou'\n  | 'li'\n  | 'in'\n  | 'ft'\n  | 'yd'\n  | 'mi'\n  | 'ua'\n  | 'ly'\n  | 'pc'\n  | 'pt'\n  | 'pixel'\n  | 'reference frame';\n\ntype PhysicalSize<Name extends string> = `PhysicalSize${Name}`;\ntype PhysicalSizeUnit<Name extends string> = `PhysicalSize${Name}Unit`;\ntype Size<Names extends string> = `Size${Names}`;\n\ntype PixelAttrs = Attrs<\n  PhysicalSize<'X' | 'Y' | 'Z'> | 'SignificantBits' | Size<'T' | 'C' | 'Z' | 'Y' | 'X'>,\n  number\n> &\n  Attrs<PhysicalSizeUnit<'X' | 'Y' | 'Z'>, UnitsLength> &\n  Attrs<'BigEndian' | 'Interleaved', boolean> & {\n    ID: string;\n    DimensionOrder: DimensionOrder;\n    Type: PixelType;\n  };\n\ntype Pixels = Node<\n  {\n    Channel: Channel | Channel[];\n    TiffData: Node<{}, Attrs<'IFD' | 'PlaneCount'>>;\n  },\n  PixelAttrs\n>;\n\ntype ChannelAttrs =\n  | {\n      ID: string;\n      SamplesPerPixel: number;\n      Name?: string;\n    }\n  | {\n      ID: string;\n      SamplesPerPixel: number;\n      Name?: string;\n      Color: number;\n    };\n\ntype Channel = Node<{}, ChannelAttrs>;\n\ntype Root = {OME: OME};\n"],"mappings":";;;;;;AAAA,IAAAA,cAAA,GAAAC,OAAA;AACA,IAAAC,UAAA,GAAAD,OAAA;AAGA,MAAME,SAAS,GAAG,IAAIC,wBAAS,CAAC;EAE9BC,mBAAmB,EAAE,EAAE;EACvBC,mBAAmB,EAAE,MAAM;EAG3BC,aAAa,EAAE,IAAI;EACnBC,mBAAmB,EAAE,IAAI;EAGzBC,gBAAgB,EAAE;AACpB,CAAC,CAAC;AAEF,MAAMC,KAAK,GAAIC,GAAW,IAAWR,SAAS,CAACO,KAAK,CAACC,GAAG,CAAC;AAElD,SAASC,UAAUA,CAACD,GAAW,EAAE;EACtC,MAAME,GAAG,GAAGH,KAAK,CAACC,GAAG,CAAC;EACtB,IAAI,CAACE,GAAG,CAACC,GAAG,EAAE;IACZ,MAAMC,KAAK,CAAC,mCAAmC,CAAC;EAClD;EACA,OAAO,IAAAC,sBAAW,EAACH,GAAG,CAACC,GAAG,CAACG,KAAK,CAAC,CAACC,GAAG,CAAEC,GAAG,IAAK;IAC7C,MAAMC,QAAQ,GAAG,IAAAJ,sBAAW,EAACG,GAAG,CAACE,MAAM,CAACC,OAAO,CAAC,CAACJ,GAAG,CAAEK,CAAC,IAAK;MAC1D,IAAI,OAAO,IAAIA,CAAC,CAACC,IAAI,EAAE;QACrB,OAAO;UAAC,GAAGD,CAAC,CAACC,IAAI;UAAEC,KAAK,EAAE,IAAAC,oBAAS,EAACH,CAAC,CAACC,IAAI,CAACC,KAAK;QAAC,CAAC;MACpD;MACA,OAAO;QAAC,GAAGF,CAAC,CAACC;MAAI,CAAC;IACpB,CAAC,CAAC;IACF,MAAM;MAACG,cAAc,GAAG,EAAE;MAAEC,WAAW,GAAG;IAAE,CAAC,GAAGT,GAAG;IACnD,MAAMU,KAAK,GAAG;MACZ,GAAGV,GAAG,CAACK,IAAI;MACXG,cAAc;MACdC,WAAW;MACXP,MAAM,EAAE;QACN,GAAGF,GAAG,CAACE,MAAM,CAACG,IAAI;QAClBJ;MACF;IACF,CAAC;IACD,OAAO;MACL,GAAGS,KAAK;MACRC,MAAMA,CAAA,EAAG;QACP,MAAM;UAACT;QAAM,CAAC,GAAGQ,KAAK;QAEtB,MAAME,KAAK,GAAI,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAC3Bb,GAAG,CAAEc,IAAI,IAAK;UACb,MAAMC,IAAI,GAAGZ,MAAM,gBAAAa,MAAA,CAAgBF,IAAI,EAAY;UACnD,MAAMG,IAAI,GAAGd,MAAM,gBAAAa,MAAA,CAAgBF,IAAI,UAAgB;UACvD,OAAOC,IAAI,IAAIE,IAAI,MAAAD,MAAA,CAAMD,IAAI,OAAAC,MAAA,CAAIC,IAAI,IAAK,GAAG;QAC/C,CAAC,CAAC,CACDC,IAAI,CAAC,KAAK,CAAC;QAEd,OAAO;UACL,kBAAkB,EAAEP,KAAK,CAACF,cAAc;UACxC,iBAAiB,KAAAO,MAAA,CAAKb,MAAM,CAACgB,KAAK,SAAAH,MAAA,CAAMb,MAAM,CAACiB,KAAK,CAAE;UACtD,aAAa,EAAEjB,MAAM,CAACkB,IAAI;UAC1B,mBAAmB,EAAER,KAAK;UAC1B,uBAAuB,KAAAG,MAAA,CAAKb,MAAM,CAACmB,KAAK,SAAAN,MAAA,CAAMb,MAAM,CAACoB,KAAK,CAAE;UAC5DrB,QAAQ,EAAEC,MAAM,CAACqB;QACnB,CAAC;MACH;IACF,CAAC;EACH,CAAC,CAAC;AACJ"}

package/dist/es5/lib/ome/utils.js

@@ -9,14 +9,12 @@ function getLabels(dimOrder) {
   return dimOrder.toLowerCase().split('').reverse();
 }
 function getDims(labels) {
-  var lookup = new Map(labels.map(function (name, i) {
-    return [name, i];
-  }));
+  const lookup = new Map(labels.map((name, i) => [name, i]));
   if (lookup.size !== labels.length) {
     throw Error('Labels must be unique, found duplicated label.');
   }
-  return function (name) {
-    var index = lookup.get(name);
+  return name => {
+    const index = lookup.get(name);
     if (index === undefined) {
       throw Error('Invalid dimension.');
     }

package/dist/es5/lib/ome/utils.js.map

@@ -1 +1 @@
-{"version":3,"file":"utils.js","names":["getLabels","dimOrder","toLowerCase","split","reverse","getDims","labels","lookup","Map","map","name","i","size","length","Error","index","get","undefined"],"sources":["../../../../src/lib/ome/utils.ts"],"sourcesContent":["import type {OMEXML} from '../ome/omexml';\nimport type {Labels} from '../../types';\n\n/*\n * Creates typed labels from DimensionOrder.\n * > imgMeta.Pixels.DimensionOrder === 'XYCZT'\n * > getLabels(imgMeta.Pixels) === ['t', 'z', 'c', 'y', 'x']\n */\n\n// eslint-disable-next-line @typescript-eslint/no-unused-vars\ntype Sel<Dim extends string> = Dim extends `${infer Z}${infer X}${infer A}${infer B}${infer C}`\n  ? [C, B, A]\n  : 'error';\nexport function getLabels(dimOrder: OMEXML[0]['Pixels']['DimensionOrder']) {\n  return dimOrder.toLowerCase().split('').reverse() as Labels<Sel<Lowercase<typeof dimOrder>>>;\n}\n\n/*\n * Creates an ES6 map of 'label' -> index\n * > const labels = ['a', 'b', 'c', 'd'];\n * > const dims = getDims(labels);\n * > dims('a') === 0;\n * > dims('b') === 1;\n * > dims('c') === 2;\n * > dims('hi!'); // throws\n */\nexport function getDims<S extends string>(labels: S[]) {\n  const lookup = new Map(labels.map((name, i) => [name, i]));\n  if (lookup.size !== labels.length) {\n    throw Error('Labels must be unique, found duplicated label.');\n  }\n  return (name: S) => {\n    const index = lookup.get(name);\n    if (index === undefined) {\n      throw Error('Invalid dimension.');\n    }\n    return index;\n  };\n}\n"],"mappings":";;;;;;;AAaO,SAASA,SAASA,CAACC,QAA+C,EAAE;EACzE,OAAOA,QAAQ,CAACC,WAAW,CAAC,CAAC,CAACC,KAAK,CAAC,EAAE,CAAC,CAACC,OAAO,CAAC,CAAC;AACnD;AAWO,SAASC,OAAOA,CAAmBC,MAAW,EAAE;EACrD,IAAMC,MAAM,GAAG,IAAIC,GAAG,CAACF,MAAM,CAACG,GAAG,CAAC,UAACC,IAAI,EAAEC,CAAC;IAAA,OAAK,CAACD,IAAI,EAAEC,CAAC,CAAC;EAAA,EAAC,CAAC;EAC1D,IAAIJ,MAAM,CAACK,IAAI,KAAKN,MAAM,CAACO,MAAM,EAAE;IACjC,MAAMC,KAAK,CAAC,gDAAgD,CAAC;EAC/D;EACA,OAAO,UAACJ,IAAO,EAAK;IAClB,IAAMK,KAAK,GAAGR,MAAM,CAACS,GAAG,CAACN,IAAI,CAAC;IAC9B,IAAIK,KAAK,KAAKE,SAAS,EAAE;MACvB,MAAMH,KAAK,CAAC,oBAAoB,CAAC;IACnC;IACA,OAAOC,KAAK;EACd,CAAC;AACH"}
+{"version":3,"file":"utils.js","names":["getLabels","dimOrder","toLowerCase","split","reverse","getDims","labels","lookup","Map","map","name","i","size","length","Error","index","get","undefined"],"sources":["../../../../src/lib/ome/utils.ts"],"sourcesContent":["import type {OMEXML} from '../ome/omexml';\nimport type {Labels} from '../../types';\n\n/*\n * Creates typed labels from DimensionOrder.\n * > imgMeta.Pixels.DimensionOrder === 'XYCZT'\n * > getLabels(imgMeta.Pixels) === ['t', 'z', 'c', 'y', 'x']\n */\n\n// eslint-disable-next-line @typescript-eslint/no-unused-vars\ntype Sel<Dim extends string> = Dim extends `${infer Z}${infer X}${infer A}${infer B}${infer C}`\n  ? [C, B, A]\n  : 'error';\nexport function getLabels(dimOrder: OMEXML[0]['Pixels']['DimensionOrder']) {\n  return dimOrder.toLowerCase().split('').reverse() as Labels<Sel<Lowercase<typeof dimOrder>>>;\n}\n\n/*\n * Creates an ES6 map of 'label' -> index\n * > const labels = ['a', 'b', 'c', 'd'];\n * > const dims = getDims(labels);\n * > dims('a') === 0;\n * > dims('b') === 1;\n * > dims('c') === 2;\n * > dims('hi!'); // throws\n */\nexport function getDims<S extends string>(labels: S[]) {\n  const lookup = new Map(labels.map((name, i) => [name, i]));\n  if (lookup.size !== labels.length) {\n    throw Error('Labels must be unique, found duplicated label.');\n  }\n  return (name: S) => {\n    const index = lookup.get(name);\n    if (index === undefined) {\n      throw Error('Invalid dimension.');\n    }\n    return index;\n  };\n}\n"],"mappings":";;;;;;;AAaO,SAASA,SAASA,CAACC,QAA+C,EAAE;EACzE,OAAOA,QAAQ,CAACC,WAAW,CAAC,CAAC,CAACC,KAAK,CAAC,EAAE,CAAC,CAACC,OAAO,CAAC,CAAC;AACnD;AAWO,SAASC,OAAOA,CAAmBC,MAAW,EAAE;EACrD,MAAMC,MAAM,GAAG,IAAIC,GAAG,CAACF,MAAM,CAACG,GAAG,CAAC,CAACC,IAAI,EAAEC,CAAC,KAAK,CAACD,IAAI,EAAEC,CAAC,CAAC,CAAC,CAAC;EAC1D,IAAIJ,MAAM,CAACK,IAAI,KAAKN,MAAM,CAACO,MAAM,EAAE;IACjC,MAAMC,KAAK,CAAC,gDAAgD,CAAC;EAC/D;EACA,OAAQJ,IAAO,IAAK;IAClB,MAAMK,KAAK,GAAGR,MAAM,CAACS,GAAG,CAACN,IAAI,CAAC;IAC9B,IAAIK,KAAK,KAAKE,SAAS,EAAE;MACvB,MAAMH,KAAK,CAAC,oBAAoB,CAAC;IACnC;IACA,OAAOC,KAAK;EACd,CAAC;AACH"}

package/dist/es5/lib/tiff-pixel-source.js

@@ -5,17 +5,10 @@ Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.default = void 0;
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 var _tiffUtils = require("./utils/tiff-utils");
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-var TiffPixelSource = function () {
-  function TiffPixelSource(indexer, dtype, tileSize, shape, labels, meta) {
-    (0, _classCallCheck2.default)(this, TiffPixelSource);
+class TiffPixelSource {
+  constructor(indexer, dtype, tileSize, shape, labels, meta) {
     (0, _defineProperty2.default)(this, "dtype", void 0);
     (0, _defineProperty2.default)(this, "tileSize", void 0);
     (0, _defineProperty2.default)(this, "shape", void 0);
@@ -29,135 +22,79 @@ var TiffPixelSource = function () {
     this.labels = labels;
     this.meta = meta;
   }
-  (0, _createClass2.default)(TiffPixelSource, [{
-    key: "getRaster",
-    value: function () {
-      var _getRaster = (0, _asyncToGenerator2.default)(_regenerator.default.mark(function _callee(_ref) {
-        var selection, signal, image;
-        return _regenerator.default.wrap(function _callee$(_context) {
-          while (1) switch (_context.prev = _context.next) {
-            case 0:
-              selection = _ref.selection, signal = _ref.signal;
-              _context.next = 3;
-              return this._indexer(selection);
-            case 3:
-              image = _context.sent;
-              return _context.abrupt("return", this._readRasters(image, {
-                signal: signal
-              }));
-            case 5:
-            case "end":
-              return _context.stop();
-          }
-        }, _callee, this);
-      }));
-      function getRaster(_x) {
-        return _getRaster.apply(this, arguments);
-      }
-      return getRaster;
-    }()
-  }, {
-    key: "getTile",
-    value: function () {
-      var _getTile = (0, _asyncToGenerator2.default)(_regenerator.default.mark(function _callee2(_ref2) {
-        var x, y, selection, signal, _this$_getTileExtent, height, width, x0, y0, window, image;
-        return _regenerator.default.wrap(function _callee2$(_context2) {
-          while (1) switch (_context2.prev = _context2.next) {
-            case 0:
-              x = _ref2.x, y = _ref2.y, selection = _ref2.selection, signal = _ref2.signal;
-              _this$_getTileExtent = this._getTileExtent(x, y), height = _this$_getTileExtent.height, width = _this$_getTileExtent.width;
-              x0 = x * this.tileSize;
-              y0 = y * this.tileSize;
-              window = [x0, y0, x0 + width, y0 + height];
-              _context2.next = 7;
-              return this._indexer(selection);
-            case 7:
-              image = _context2.sent;
-              return _context2.abrupt("return", this._readRasters(image, {
-                window: window,
-                width: width,
-                height: height,
-                signal: signal
-              }));
-            case 9:
-            case "end":
-              return _context2.stop();
-          }
-        }, _callee2, this);
-      }));
-      function getTile(_x2) {
-        return _getTile.apply(this, arguments);
-      }
-      return getTile;
-    }()
-  }, {
-    key: "_readRasters",
-    value: function () {
-      var _readRasters2 = (0, _asyncToGenerator2.default)(_regenerator.default.mark(function _callee3(image, props) {
-        var _props$signal;
-        var interleave, raster, data;
-        return _regenerator.default.wrap(function _callee3$(_context3) {
-          while (1) switch (_context3.prev = _context3.next) {
-            case 0:
-              interleave = (0, _tiffUtils.isInterleaved)(this.shape);
-              _context3.next = 3;
-              return image.readRasters(_objectSpread({
-                interleave: interleave
-              }, props));
-            case 3:
-              raster = _context3.sent;
-              if (!(props !== null && props !== void 0 && (_props$signal = props.signal) !== null && _props$signal !== void 0 && _props$signal.aborted)) {
-                _context3.next = 6;
-                break;
-              }
-              throw _tiffUtils.SIGNAL_ABORTED;
-            case 6:
-              data = interleave ? raster : raster[0];
-              return _context3.abrupt("return", {
-                data: data,
-                width: raster.width,
-                height: raster.height
-              });
-            case 8:
-            case "end":
-              return _context3.stop();
-          }
-        }, _callee3, this);
-      }));
-      function _readRasters(_x3, _x4) {
-        return _readRasters2.apply(this, arguments);
-      }
-      return _readRasters;
-    }()
-  }, {
-    key: "_getTileExtent",
-    value: function _getTileExtent(x, y) {
-      var _getImageSize = (0, _tiffUtils.getImageSize)(this),
-        zoomLevelHeight = _getImageSize.height,
-        zoomLevelWidth = _getImageSize.width;
-      var height = this.tileSize;
-      var width = this.tileSize;
-      var maxXTileCoord = Math.floor(zoomLevelWidth / this.tileSize);
-      var maxYTileCoord = Math.floor(zoomLevelHeight / this.tileSize);
-      if (x === maxXTileCoord) {
-        width = zoomLevelWidth % this.tileSize;
-      }
-      if (y === maxYTileCoord) {
-        height = zoomLevelHeight % this.tileSize;
-      }
-      return {
-        height: height,
-        width: width
-      };
+  async getRaster(_ref) {
+    let {
+      selection,
+      signal
+    } = _ref;
+    const image = await this._indexer(selection);
+    return this._readRasters(image, {
+      signal
+    });
+  }
+  async getTile(_ref2) {
+    let {
+      x,
+      y,
+      selection,
+      signal
+    } = _ref2;
+    const {
+      height,
+      width
+    } = this._getTileExtent(x, y);
+    const x0 = x * this.tileSize;
+    const y0 = y * this.tileSize;
+    const window = [x0, y0, x0 + width, y0 + height];
+    const image = await this._indexer(selection);
+    return this._readRasters(image, {
+      window,
+      width,
+      height,
+      signal
+    });
+  }
+  async _readRasters(image, props) {
+    var _props$signal;
+    const interleave = (0, _tiffUtils.isInterleaved)(this.shape);
+    const raster = await image.readRasters({
+      interleave,
+      ...props
+    });
+    if (props !== null && props !== void 0 && (_props$signal = props.signal) !== null && _props$signal !== void 0 && _props$signal.aborted) {
+      throw _tiffUtils.SIGNAL_ABORTED;
+    }
+    const data = interleave ? raster : raster[0];
+    return {
+      data,
+      width: raster.width,
+      height: raster.height
+    };
+  }
+  _getTileExtent(x, y) {
+    const {
+      height: zoomLevelHeight,
+      width: zoomLevelWidth
+    } = (0, _tiffUtils.getImageSize)(this);
+    let height = this.tileSize;
+    let width = this.tileSize;
+    const maxXTileCoord = Math.floor(zoomLevelWidth / this.tileSize);
+    const maxYTileCoord = Math.floor(zoomLevelHeight / this.tileSize);
+    if (x === maxXTileCoord) {
+      width = zoomLevelWidth % this.tileSize;
     }
-  }, {
-    key: "onTileError",
-    value: function onTileError(err) {
-      console.error(err);
+    if (y === maxYTileCoord) {
+      height = zoomLevelHeight % this.tileSize;
     }
-  }]);
-  return TiffPixelSource;
-}();
+    return {
+      height,
+      width
+    };
+  }
+  onTileError(err) {
+    console.error(err);
+  }
+}
 var _default = TiffPixelSource;
 exports.default = _default;
 //# sourceMappingURL=tiff-pixel-source.js.map

package/dist/es5/lib/tiff-pixel-source.js.map

@@ -1 +1 @@
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It's weird, but this seems to work.\n     */\n    const data = (interleave ? raster : raster[0]) as TypedArray;\n    return {\n      data,\n      width: raster.width,\n      height: raster.height\n    } as PixelData;\n  }\n\n  /*\n   * Computes tile size given x, y coord.\n   */\n  private _getTileExtent(x: number, y: number) {\n    const {height: zoomLevelHeight, width: zoomLevelWidth} = getImageSize(this);\n    let height = this.tileSize;\n    let width = this.tileSize;\n    const maxXTileCoord = Math.floor(zoomLevelWidth / this.tileSize);\n    const maxYTileCoord = Math.floor(zoomLevelHeight / this.tileSize);\n    if (x === maxXTileCoord) {\n      width = zoomLevelWidth % this.tileSize;\n    }\n    if (y === maxYTileCoord) {\n      height = zoomLevelHeight % this.tileSize;\n    }\n    return {height, width};\n  }\n\n  onTileError(err: Error) {\n    console.error(err); // eslint-disable-line no-console\n  }\n}\n\nexport default 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