@loaders.gl/geotiff 3.1.3 → 4.0.0-alpha.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (85) hide show
  1. package/dist/bundle.js +2 -24
  2. package/dist/bundle.js.map +1 -0
  3. package/dist/index.js +3 -10
  4. package/dist/index.js.map +1 -0
  5. package/dist/lib/load-geotiff.js +31 -56
  6. package/dist/lib/load-geotiff.js.map +1 -0
  7. package/dist/lib/ome/load-ome-tiff.js +50 -45
  8. package/dist/lib/ome/load-ome-tiff.js.map +1 -0
  9. package/dist/lib/ome/ome-indexers.js +112 -104
  10. package/dist/lib/ome/ome-indexers.js.map +1 -0
  11. package/dist/lib/ome/ome-utils.js +69 -59
  12. package/dist/lib/ome/ome-utils.js.map +1 -0
  13. package/dist/lib/ome/omexml.js +60 -60
  14. package/dist/lib/ome/omexml.js.map +1 -0
  15. package/dist/lib/ome/utils.js +18 -27
  16. package/dist/lib/ome/utils.js.map +1 -0
  17. package/dist/lib/tiff-pixel-source.js +106 -59
  18. package/dist/lib/tiff-pixel-source.js.map +1 -0
  19. package/dist/lib/utils/Pool.js +72 -78
  20. package/dist/lib/utils/Pool.js.map +1 -0
  21. package/dist/{es5/lib → lib}/utils/decoder.worker.ts.disabled +0 -0
  22. package/dist/lib/utils/proxies.js +56 -79
  23. package/dist/lib/utils/proxies.js.map +1 -0
  24. package/dist/lib/utils/tiff-utils.js +24 -40
  25. package/dist/lib/utils/tiff-utils.js.map +1 -0
  26. package/dist/types.js +2 -2
  27. package/dist/{es5/types.js.map → types.js.map} +0 -0
  28. package/dist/typings/geotiff.js +2 -1
  29. package/dist/{es5/typings → typings}/geotiff.js.map +0 -0
  30. package/package.json +4 -4
  31. package/dist/es5/bundle.js +0 -13
  32. package/dist/es5/bundle.js.map +0 -1
  33. package/dist/es5/index.js +0 -24
  34. package/dist/es5/index.js.map +0 -1
  35. package/dist/es5/lib/load-geotiff.js +0 -100
  36. package/dist/es5/lib/load-geotiff.js.map +0 -1
  37. package/dist/es5/lib/ome/load-ome-tiff.js +0 -85
  38. package/dist/es5/lib/ome/load-ome-tiff.js.map +0 -1
  39. package/dist/es5/lib/ome/ome-indexers.js +0 -167
  40. package/dist/es5/lib/ome/ome-indexers.js.map +0 -1
  41. package/dist/es5/lib/ome/ome-utils.js +0 -87
  42. package/dist/es5/lib/ome/ome-utils.js.map +0 -1
  43. package/dist/es5/lib/ome/omexml.js +0 -82
  44. package/dist/es5/lib/ome/omexml.js.map +0 -1
  45. package/dist/es5/lib/ome/utils.js +0 -32
  46. package/dist/es5/lib/ome/utils.js.map +0 -1
  47. package/dist/es5/lib/tiff-pixel-source.js +0 -202
  48. package/dist/es5/lib/tiff-pixel-source.js.map +0 -1
  49. package/dist/es5/lib/utils/Pool.js +0 -173
  50. package/dist/es5/lib/utils/Pool.js.map +0 -1
  51. package/dist/es5/lib/utils/proxies.js +0 -82
  52. package/dist/es5/lib/utils/proxies.js.map +0 -1
  53. package/dist/es5/lib/utils/tiff-utils.js +0 -53
  54. package/dist/es5/lib/utils/tiff-utils.js.map +0 -1
  55. package/dist/es5/types.js +0 -2
  56. package/dist/es5/typings/geotiff.js +0 -2
  57. package/dist/esm/bundle.js +0 -4
  58. package/dist/esm/bundle.js.map +0 -1
  59. package/dist/esm/index.js +0 -3
  60. package/dist/esm/index.js.map +0 -1
  61. package/dist/esm/lib/load-geotiff.js +0 -32
  62. package/dist/esm/lib/load-geotiff.js.map +0 -1
  63. package/dist/esm/lib/ome/load-ome-tiff.js +0 -51
  64. package/dist/esm/lib/ome/load-ome-tiff.js.map +0 -1
  65. package/dist/esm/lib/ome/ome-indexers.js +0 -116
  66. package/dist/esm/lib/ome/ome-indexers.js.map +0 -1
  67. package/dist/esm/lib/ome/ome-utils.js +0 -73
  68. package/dist/esm/lib/ome/ome-utils.js.map +0 -1
  69. package/dist/esm/lib/ome/omexml.js +0 -66
  70. package/dist/esm/lib/ome/omexml.js.map +0 -1
  71. package/dist/esm/lib/ome/utils.js +0 -21
  72. package/dist/esm/lib/ome/utils.js.map +0 -1
  73. package/dist/esm/lib/tiff-pixel-source.js +0 -111
  74. package/dist/esm/lib/tiff-pixel-source.js.map +0 -1
  75. package/dist/esm/lib/utils/Pool.js +0 -77
  76. package/dist/esm/lib/utils/Pool.js.map +0 -1
  77. package/dist/esm/lib/utils/decoder.worker.ts.disabled +0 -21
  78. package/dist/esm/lib/utils/proxies.js +0 -63
  79. package/dist/esm/lib/utils/proxies.js.map +0 -1
  80. package/dist/esm/lib/utils/tiff-utils.js +0 -28
  81. package/dist/esm/lib/utils/tiff-utils.js.map +0 -1
  82. package/dist/esm/types.js +0 -2
  83. package/dist/esm/types.js.map +0 -1
  84. package/dist/esm/typings/geotiff.js +0 -2
  85. package/dist/esm/typings/geotiff.js.map +0 -1
@@ -1,73 +0,0 @@
1
- import { getDims, getLabels } from './utils';
2
- export const DTYPE_LOOKUP = {
3
- uint8: 'Uint8',
4
- uint16: 'Uint16',
5
- uint32: 'Uint32',
6
- float: 'Float32',
7
- double: 'Float64',
8
- int8: 'Int8',
9
- int16: 'Int16',
10
- int32: 'Int32'
11
- };
12
- export function getOmePixelSourceMeta({
13
- Pixels
14
- }) {
15
- const labels = getLabels(Pixels.DimensionOrder);
16
- const dims = getDims(labels);
17
- const shape = Array(labels.length).fill(0);
18
- shape[dims('t')] = Pixels.SizeT;
19
- shape[dims('c')] = Pixels.SizeC;
20
- shape[dims('z')] = Pixels.SizeZ;
21
-
22
- if (Pixels.Interleaved) {
23
- labels.push('_c');
24
- shape.push(3);
25
- }
26
-
27
- const getShape = level => {
28
- const s = [...shape];
29
- s[dims('x')] = Pixels.SizeX >> level;
30
- s[dims('y')] = Pixels.SizeY >> level;
31
- return s;
32
- };
33
-
34
- if (!(Pixels.Type in DTYPE_LOOKUP)) {
35
- throw Error("Pixel type ".concat(Pixels.Type, " not supported."));
36
- }
37
-
38
- const dtype = DTYPE_LOOKUP[Pixels.Type];
39
-
40
- if (Pixels.PhysicalSizeX && Pixels.PhysicalSizeY) {
41
- const physicalSizes = {
42
- x: {
43
- size: Pixels.PhysicalSizeX,
44
- unit: Pixels.PhysicalSizeXUnit
45
- },
46
- y: {
47
- size: Pixels.PhysicalSizeY,
48
- unit: Pixels.PhysicalSizeYUnit
49
- }
50
- };
51
-
52
- if (Pixels.PhysicalSizeZ) {
53
- physicalSizes.z = {
54
- size: Pixels.PhysicalSizeZ,
55
- unit: Pixels.PhysicalSizeZUnit
56
- };
57
- }
58
-
59
- return {
60
- labels,
61
- getShape,
62
- physicalSizes,
63
- dtype
64
- };
65
- }
66
-
67
- return {
68
- labels,
69
- getShape,
70
- dtype
71
- };
72
- }
73
- //# sourceMappingURL=ome-utils.js.map
@@ -1 +0,0 @@
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- {"version":3,"sources":["../../../../src/lib/ome/ome-utils.ts"],"names":["getDims","getLabels","DTYPE_LOOKUP","uint8","uint16","uint32","float","double","int8","int16","int32","getOmePixelSourceMeta","Pixels","labels","DimensionOrder","dims","shape","Array","length","fill","SizeT","SizeC","SizeZ","Interleaved","push","getShape","level","s","SizeX","SizeY","Type","Error","dtype","PhysicalSizeX","PhysicalSizeY","physicalSizes","x","size","unit","PhysicalSizeXUnit","y","PhysicalSizeYUnit","PhysicalSizeZ","z","PhysicalSizeZUnit"],"mappings":"AAAA,SAAQA,OAAR,EAAiBC,SAAjB,QAAiC,SAAjC;AAGA,OAAO,MAAMC,YAAY,GAAG;AAC1BC,EAAAA,KAAK,EAAE,OADmB;AAE1BC,EAAAA,MAAM,EAAE,QAFkB;AAG1BC,EAAAA,MAAM,EAAE,QAHkB;AAI1BC,EAAAA,KAAK,EAAE,SAJmB;AAK1BC,EAAAA,MAAM,EAAE,SALkB;AAM1BC,EAAAA,IAAI,EAAE,MANoB;AAO1BC,EAAAA,KAAK,EAAE,OAPmB;AAQ1BC,EAAAA,KAAK,EAAE;AARmB,CAArB;AAWP,OAAO,SAASC,qBAAT,CAA+B;AAACC,EAAAA;AAAD,CAA/B,EAAoD;AAEzD,QAAMC,MAAM,GAAGZ,SAAS,CAACW,MAAM,CAACE,cAAR,CAAxB;AAGA,QAAMC,IAAI,GAAGf,OAAO,CAACa,MAAD,CAApB;AACA,QAAMG,KAAe,GAAGC,KAAK,CAACJ,MAAM,CAACK,MAAR,CAAL,CAAqBC,IAArB,CAA0B,CAA1B,CAAxB;AACAH,EAAAA,KAAK,CAACD,IAAI,CAAC,GAAD,CAAL,CAAL,GAAmBH,MAAM,CAACQ,KAA1B;AACAJ,EAAAA,KAAK,CAACD,IAAI,CAAC,GAAD,CAAL,CAAL,GAAmBH,MAAM,CAACS,KAA1B;AACAL,EAAAA,KAAK,CAACD,IAAI,CAAC,GAAD,CAAL,CAAL,GAAmBH,MAAM,CAACU,KAA1B;;AAGA,MAAIV,MAAM,CAACW,WAAX,EAAwB;AAEtBV,IAAAA,MAAM,CAACW,IAAP,CAAY,IAAZ;AACAR,IAAAA,KAAK,CAACQ,IAAN,CAAW,CAAX;AACD;;AAID,QAAMC,QAAQ,GAAIC,KAAD,IAAmB;AAClC,UAAMC,CAAC,GAAG,CAAC,GAAGX,KAAJ,CAAV;AACAW,IAAAA,CAAC,CAACZ,IAAI,CAAC,GAAD,CAAL,CAAD,GAAeH,MAAM,CAACgB,KAAP,IAAgBF,KAA/B;AACAC,IAAAA,CAAC,CAACZ,IAAI,CAAC,GAAD,CAAL,CAAD,GAAeH,MAAM,CAACiB,KAAP,IAAgBH,KAA/B;AACA,WAAOC,CAAP;AACD,GALD;;AAOA,MAAI,EAAEf,MAAM,CAACkB,IAAP,IAAe5B,YAAjB,CAAJ,EAAoC;AAClC,UAAM6B,KAAK,sBAAenB,MAAM,CAACkB,IAAtB,qBAAX;AACD;;AAED,QAAME,KAAK,GAAG9B,YAAY,CAACU,MAAM,CAACkB,IAAR,CAA1B;;AACA,MAAIlB,MAAM,CAACqB,aAAP,IAAwBrB,MAAM,CAACsB,aAAnC,EAAkD;AAChD,UAAMC,aAEL,GAAG;AACFC,MAAAA,CAAC,EAAE;AACDC,QAAAA,IAAI,EAAEzB,MAAM,CAACqB,aADZ;AAEDK,QAAAA,IAAI,EAAE1B,MAAM,CAAC2B;AAFZ,OADD;AAKFC,MAAAA,CAAC,EAAE;AACDH,QAAAA,IAAI,EAAEzB,MAAM,CAACsB,aADZ;AAEDI,QAAAA,IAAI,EAAE1B,MAAM,CAAC6B;AAFZ;AALD,KAFJ;;AAYA,QAAI7B,MAAM,CAAC8B,aAAX,EAA0B;AACxBP,MAAAA,aAAa,CAACQ,CAAd,GAAkB;AAChBN,QAAAA,IAAI,EAAEzB,MAAM,CAAC8B,aADG;AAEhBJ,QAAAA,IAAI,EAAE1B,MAAM,CAACgC;AAFG,OAAlB;AAID;;AACD,WAAO;AAAC/B,MAAAA,MAAD;AAASY,MAAAA,QAAT;AAAmBU,MAAAA,aAAnB;AAAkCH,MAAAA;AAAlC,KAAP;AACD;;AAED,SAAO;AAACnB,IAAAA,MAAD;AAASY,IAAAA,QAAT;AAAmBO,IAAAA;AAAnB,GAAP;AACD","sourcesContent":["import {getDims, getLabels} from './utils';\nimport type {OMEXML, UnitsLength} from './omexml';\n\nexport const DTYPE_LOOKUP = {\n uint8: 'Uint8',\n uint16: 'Uint16',\n uint32: 'Uint32',\n float: 'Float32',\n double: 'Float64',\n int8: 'Int8',\n int16: 'Int16',\n int32: 'Int32'\n} as const;\n\nexport function getOmePixelSourceMeta({Pixels}: OMEXML[0]) {\n // e.g. 'XYZCT' -> ['t', 'c', 'z', 'y', 'x']\n const labels = getLabels(Pixels.DimensionOrder);\n\n // Compute \"shape\" of image\n const dims = getDims(labels);\n const shape: number[] = Array(labels.length).fill(0);\n shape[dims('t')] = Pixels.SizeT;\n shape[dims('c')] = Pixels.SizeC;\n shape[dims('z')] = Pixels.SizeZ;\n\n // Push extra dimension if data are interleaved.\n if (Pixels.Interleaved) {\n // @ts-ignore\n labels.push('_c');\n shape.push(3);\n }\n\n // Creates a new shape for different level of pyramid.\n // Assumes factor-of-two downsampling.\n const getShape = (level: number) => {\n const s = [...shape];\n s[dims('x')] = Pixels.SizeX >> level;\n s[dims('y')] = Pixels.SizeY >> level;\n return s;\n };\n\n if (!(Pixels.Type in DTYPE_LOOKUP)) {\n throw Error(`Pixel type ${Pixels.Type} not supported.`);\n }\n\n const dtype = DTYPE_LOOKUP[Pixels.Type as keyof typeof DTYPE_LOOKUP];\n if (Pixels.PhysicalSizeX && Pixels.PhysicalSizeY) {\n const physicalSizes: {\n [k: string]: {size: number; unit: UnitsLength};\n } = {\n x: {\n size: Pixels.PhysicalSizeX,\n unit: Pixels.PhysicalSizeXUnit\n },\n y: {\n size: Pixels.PhysicalSizeY,\n unit: Pixels.PhysicalSizeYUnit\n }\n };\n if (Pixels.PhysicalSizeZ) {\n physicalSizes.z = {\n size: Pixels.PhysicalSizeZ,\n unit: Pixels.PhysicalSizeZUnit\n };\n }\n return {labels, getShape, physicalSizes, dtype};\n }\n\n return {labels, getShape, dtype};\n}\n"],"file":"ome-utils.js"}
@@ -1,66 +0,0 @@
1
- import parser from 'fast-xml-parser';
2
- import { ensureArray, intToRgba } from '../utils/tiff-utils';
3
- const PARSER_OPTIONS = {
4
- attributeNamePrefix: '',
5
- attrNodeName: 'attr',
6
- parseNodeValue: true,
7
- parseAttributeValue: true,
8
- ignoreAttributes: false
9
- };
10
-
11
- const parse = str => parser.parse(str, PARSER_OPTIONS);
12
-
13
- export function fromString(str) {
14
- const res = parse(str);
15
-
16
- if (!res.OME) {
17
- throw Error('Failed to parse OME-XML metadata.');
18
- }
19
-
20
- return ensureArray(res.OME.Image).map(img => {
21
- const Channels = ensureArray(img.Pixels.Channel).map(c => {
22
- if ('Color' in c.attr) {
23
- return { ...c.attr,
24
- Color: intToRgba(c.attr.Color)
25
- };
26
- }
27
-
28
- return { ...c.attr
29
- };
30
- });
31
- const {
32
- AquisitionDate = '',
33
- Description = ''
34
- } = img;
35
- const image = { ...img.attr,
36
- AquisitionDate,
37
- Description,
38
- Pixels: { ...img.Pixels.attr,
39
- Channels
40
- }
41
- };
42
- return { ...image,
43
-
44
- format() {
45
- const {
46
- Pixels
47
- } = image;
48
- const sizes = ['X', 'Y', 'Z'].map(name => {
49
- const size = Pixels["PhysicalSize".concat(name)];
50
- const unit = Pixels["PhysicalSize".concat(name, "Unit")];
51
- return size && unit ? "".concat(size, " ").concat(unit) : '-';
52
- }).join(' x ');
53
- return {
54
- 'Acquisition Date': image.AquisitionDate,
55
- 'Dimensions (XY)': "".concat(Pixels.SizeX, " x ").concat(Pixels.SizeY),
56
- 'Pixels Type': Pixels.Type,
57
- 'Pixels Size (XYZ)': sizes,
58
- 'Z-sections/Timepoints': "".concat(Pixels.SizeZ, " x ").concat(Pixels.SizeT),
59
- Channels: Pixels.SizeC
60
- };
61
- }
62
-
63
- };
64
- });
65
- }
66
- //# sourceMappingURL=omexml.js.map
@@ -1 +0,0 @@
1
- {"version":3,"sources":["../../../../src/lib/ome/omexml.ts"],"names":["parser","ensureArray","intToRgba","PARSER_OPTIONS","attributeNamePrefix","attrNodeName","parseNodeValue","parseAttributeValue","ignoreAttributes","parse","str","fromString","res","OME","Error","Image","map","img","Channels","Pixels","Channel","c","attr","Color","AquisitionDate","Description","image","format","sizes","name","size","unit","join","SizeX","SizeY","Type","SizeZ","SizeT","SizeC"],"mappings":"AAAA,OAAOA,MAAP,MAAmB,iBAAnB;AACA,SAAQC,WAAR,EAAqBC,SAArB,QAAqC,qBAArC;AAGA,MAAMC,cAAc,GAAG;AAErBC,EAAAA,mBAAmB,EAAE,EAFA;AAGrBC,EAAAA,YAAY,EAAE,MAHO;AAMrBC,EAAAA,cAAc,EAAE,IANK;AAOrBC,EAAAA,mBAAmB,EAAE,IAPA;AAUrBC,EAAAA,gBAAgB,EAAE;AAVG,CAAvB;;AAaA,MAAMC,KAAK,GAAIC,GAAD,IAAuBV,MAAM,CAACS,KAAP,CAAaC,GAAb,EAAkBP,cAAlB,CAArC;;AAEA,OAAO,SAASQ,UAAT,CAAoBD,GAApB,EAAiC;AACtC,QAAME,GAAG,GAAGH,KAAK,CAACC,GAAD,CAAjB;;AACA,MAAI,CAACE,GAAG,CAACC,GAAT,EAAc;AACZ,UAAMC,KAAK,CAAC,mCAAD,CAAX;AACD;;AACD,SAAOb,WAAW,CAACW,GAAG,CAACC,GAAJ,CAAQE,KAAT,CAAX,CAA2BC,GAA3B,CAAgCC,GAAD,IAAS;AAC7C,UAAMC,QAAQ,GAAGjB,WAAW,CAACgB,GAAG,CAACE,MAAJ,CAAWC,OAAZ,CAAX,CAAgCJ,GAAhC,CAAqCK,CAAD,IAAO;AAC1D,UAAI,WAAWA,CAAC,CAACC,IAAjB,EAAuB;AACrB,eAAO,EAAC,GAAGD,CAAC,CAACC,IAAN;AAAYC,UAAAA,KAAK,EAAErB,SAAS,CAACmB,CAAC,CAACC,IAAF,CAAOC,KAAR;AAA5B,SAAP;AACD;;AACD,aAAO,EAAC,GAAGF,CAAC,CAACC;AAAN,OAAP;AACD,KALgB,CAAjB;AAMA,UAAM;AAACE,MAAAA,cAAc,GAAG,EAAlB;AAAsBC,MAAAA,WAAW,GAAG;AAApC,QAA0CR,GAAhD;AACA,UAAMS,KAAK,GAAG,EACZ,GAAGT,GAAG,CAACK,IADK;AAEZE,MAAAA,cAFY;AAGZC,MAAAA,WAHY;AAIZN,MAAAA,MAAM,EAAE,EACN,GAAGF,GAAG,CAACE,MAAJ,CAAWG,IADR;AAENJ,QAAAA;AAFM;AAJI,KAAd;AASA,WAAO,EACL,GAAGQ,KADE;;AAELC,MAAAA,MAAM,GAAG;AACP,cAAM;AAACR,UAAAA;AAAD,YAAWO,KAAjB;AAEA,cAAME,KAAK,GAAI,CAAC,GAAD,EAAM,GAAN,EAAW,GAAX,CAAD,CACXZ,GADW,CACNa,IAAD,IAAU;AACb,gBAAMC,IAAI,GAAGX,MAAM,uBAAgBU,IAAhB,EAAnB;AACA,gBAAME,IAAI,GAAGZ,MAAM,uBAAgBU,IAAhB,UAAnB;AACA,iBAAOC,IAAI,IAAIC,IAAR,aAAkBD,IAAlB,cAA0BC,IAA1B,IAAmC,GAA1C;AACD,SALW,EAMXC,IANW,CAMN,KANM,CAAd;AAQA,eAAO;AACL,8BAAoBN,KAAK,CAACF,cADrB;AAEL,uCAAsBL,MAAM,CAACc,KAA7B,gBAAwCd,MAAM,CAACe,KAA/C,CAFK;AAGL,yBAAef,MAAM,CAACgB,IAHjB;AAIL,+BAAqBP,KAJhB;AAKL,6CAA4BT,MAAM,CAACiB,KAAnC,gBAA8CjB,MAAM,CAACkB,KAArD,CALK;AAMLnB,UAAAA,QAAQ,EAAEC,MAAM,CAACmB;AANZ,SAAP;AAQD;;AArBI,KAAP;AAuBD,GAxCM,CAAP;AAyCD","sourcesContent":["import parser from 'fast-xml-parser';\nimport {ensureArray, intToRgba} from '../utils/tiff-utils';\n\n// WARNING: Changes to the parser options _will_ effect the types in types/omexml.d.ts.\nconst PARSER_OPTIONS = {\n // Nests attributes withtout prefix under 'attr' key for each node\n attributeNamePrefix: '',\n attrNodeName: 'attr',\n\n // Parses numbers for both attributes and nodes\n parseNodeValue: true,\n parseAttributeValue: true,\n\n // Forces attributes to be parsed\n ignoreAttributes: false\n};\n\nconst parse = (str: string): Root => parser.parse(str, PARSER_OPTIONS);\n\nexport function fromString(str: string) {\n const res = parse(str);\n if (!res.OME) {\n throw Error('Failed to parse OME-XML metadata.');\n }\n return ensureArray(res.OME.Image).map((img) => {\n const Channels = ensureArray(img.Pixels.Channel).map((c) => {\n if ('Color' in c.attr) {\n return {...c.attr, Color: intToRgba(c.attr.Color)};\n }\n return {...c.attr};\n });\n const {AquisitionDate = '', Description = ''} = img;\n const image = {\n ...img.attr,\n AquisitionDate,\n Description,\n Pixels: {\n ...img.Pixels.attr,\n Channels\n }\n };\n return {\n ...image,\n format() {\n const {Pixels} = image;\n\n const sizes = (['X', 'Y', 'Z'] as const)\n .map((name) => {\n const size = Pixels[`PhysicalSize${name}` as const];\n const unit = Pixels[`PhysicalSize${name}Unit` as const];\n return size && unit ? `${size} ${unit}` : '-';\n })\n .join(' x ');\n\n return {\n 'Acquisition Date': image.AquisitionDate,\n 'Dimensions (XY)': `${Pixels.SizeX} x ${Pixels.SizeY}`,\n 'Pixels Type': Pixels.Type,\n 'Pixels Size (XYZ)': sizes,\n 'Z-sections/Timepoints': `${Pixels.SizeZ} x ${Pixels.SizeT}`,\n Channels: Pixels.SizeC\n };\n }\n };\n });\n}\n\nexport type OMEXML = ReturnType<typeof fromString>;\nexport type DimensionOrder = 'XYZCT' | 'XYZTC' | 'XYCTZ' | 'XYCZT' | 'XYTCZ' | 'XYTZC';\n\n// Structure of node is determined by the PARSER_OPTIONS.\ntype Node<T, A> = T & {attr: A};\ntype Attrs<Fields extends string, T = string> = {[K in Fields]: T};\n\ntype OMEAttrs = Attrs<'xmlns' | 'xmlns:xsi' | 'xsi:schemaLocation'>;\ntype OME = Node<{Insturment: Insturment; Image: Image | Image[]}, OMEAttrs>;\n\ntype Insturment = Node<\n {Objective: Node<{}, Attrs<'ID' | 'Model' | 'NominalMagnification'>>},\n Attrs<'ID'>\n>;\n\ninterface ImageNodes {\n AquisitionDate?: string;\n Description?: string;\n Pixels: Pixels;\n InstrumentRef: Node<{}, {ID: string}>;\n ObjectiveSettings: Node<{}, {ID: string}>;\n}\ntype Image = Node<ImageNodes, Attrs<'ID' | 'Name'>>;\n\ntype PixelType =\n | 'int8'\n | 'int16'\n | 'int32'\n | 'uint8'\n | 'uint16'\n | 'uint32'\n | 'float'\n | 'bit'\n | 'double'\n | 'complex'\n | 'double-complex';\n\nexport type UnitsLength =\n | 'Ym'\n | 'Zm'\n | 'Em'\n | 'Pm'\n | 'Tm'\n | 'Gm'\n | 'Mm'\n | 'km'\n | 'hm'\n | 'dam'\n | 'm'\n | 'dm'\n | 'cm'\n | 'mm'\n | 'µm'\n | 'nm'\n | 'pm'\n | 'fm'\n | 'am'\n | 'zm'\n | 'ym'\n | 'Å'\n | 'thou'\n | 'li'\n | 'in'\n | 'ft'\n | 'yd'\n | 'mi'\n | 'ua'\n | 'ly'\n | 'pc'\n | 'pt'\n | 'pixel'\n | 'reference frame';\n\ntype PhysicalSize<Name extends string> = `PhysicalSize${Name}`;\ntype PhysicalSizeUnit<Name extends string> = `PhysicalSize${Name}Unit`;\ntype Size<Names extends string> = `Size${Names}`;\n\ntype PixelAttrs = Attrs<\n PhysicalSize<'X' | 'Y' | 'Z'> | 'SignificantBits' | Size<'T' | 'C' | 'Z' | 'Y' | 'X'>,\n number\n> &\n Attrs<PhysicalSizeUnit<'X' | 'Y' | 'Z'>, UnitsLength> &\n Attrs<'BigEndian' | 'Interleaved', boolean> & {\n ID: string;\n DimensionOrder: DimensionOrder;\n Type: PixelType;\n };\n\ntype Pixels = Node<\n {\n Channel: Channel | Channel[];\n TiffData: Node<{}, Attrs<'IFD' | 'PlaneCount'>>;\n },\n PixelAttrs\n>;\n\ntype ChannelAttrs =\n | {\n ID: string;\n SamplesPerPixel: number;\n Name?: string;\n }\n | {\n ID: string;\n SamplesPerPixel: number;\n Name?: string;\n Color: number;\n };\n\ntype Channel = Node<{}, ChannelAttrs>;\n\ntype Root = {OME: OME};\n"],"file":"omexml.js"}
@@ -1,21 +0,0 @@
1
- export function getLabels(dimOrder) {
2
- return dimOrder.toLowerCase().split('').reverse();
3
- }
4
- export function getDims(labels) {
5
- const lookup = new Map(labels.map((name, i) => [name, i]));
6
-
7
- if (lookup.size !== labels.length) {
8
- throw Error('Labels must be unique, found duplicated label.');
9
- }
10
-
11
- return name => {
12
- const index = lookup.get(name);
13
-
14
- if (index === undefined) {
15
- throw Error('Invalid dimension.');
16
- }
17
-
18
- return index;
19
- };
20
- }
21
- //# sourceMappingURL=utils.js.map
@@ -1 +0,0 @@
1
- {"version":3,"sources":["../../../../src/lib/ome/utils.ts"],"names":["getLabels","dimOrder","toLowerCase","split","reverse","getDims","labels","lookup","Map","map","name","i","size","length","Error","index","get","undefined"],"mappings":"AAaA,OAAO,SAASA,SAAT,CAAmBC,QAAnB,EAAoE;AACzE,SAAOA,QAAQ,CAACC,WAAT,GAAuBC,KAAvB,CAA6B,EAA7B,EAAiCC,OAAjC,EAAP;AACD;AAWD,OAAO,SAASC,OAAT,CAAmCC,MAAnC,EAAgD;AACrD,QAAMC,MAAM,GAAG,IAAIC,GAAJ,CAAQF,MAAM,CAACG,GAAP,CAAW,CAACC,IAAD,EAAOC,CAAP,KAAa,CAACD,IAAD,EAAOC,CAAP,CAAxB,CAAR,CAAf;;AACA,MAAIJ,MAAM,CAACK,IAAP,KAAgBN,MAAM,CAACO,MAA3B,EAAmC;AACjC,UAAMC,KAAK,CAAC,gDAAD,CAAX;AACD;;AACD,SAAQJ,IAAD,IAAa;AAClB,UAAMK,KAAK,GAAGR,MAAM,CAACS,GAAP,CAAWN,IAAX,CAAd;;AACA,QAAIK,KAAK,KAAKE,SAAd,EAAyB;AACvB,YAAMH,KAAK,CAAC,oBAAD,CAAX;AACD;;AACD,WAAOC,KAAP;AACD,GAND;AAOD","sourcesContent":["import type {OMEXML} from '../ome/omexml';\nimport type {Labels} from '../../types';\n\n/*\n * Creates typed labels from DimensionOrder.\n * > imgMeta.Pixels.DimensionOrder === 'XYCZT'\n * > getLabels(imgMeta.Pixels) === ['t', 'z', 'c', 'y', 'x']\n */\n\n// eslint-disable-next-line @typescript-eslint/no-unused-vars\ntype Sel<Dim extends string> = Dim extends `${infer Z}${infer X}${infer A}${infer B}${infer C}`\n ? [C, B, A]\n : 'error';\nexport function getLabels(dimOrder: OMEXML[0]['Pixels']['DimensionOrder']) {\n return dimOrder.toLowerCase().split('').reverse() as Labels<Sel<Lowercase<typeof dimOrder>>>;\n}\n\n/*\n * Creates an ES6 map of 'label' -> index\n * > const labels = ['a', 'b', 'c', 'd'];\n * > const dims = getDims(labels);\n * > dims('a') === 0;\n * > dims('b') === 1;\n * > dims('c') === 2;\n * > dims('hi!'); // throws\n */\nexport function getDims<S extends string>(labels: S[]) {\n const lookup = new Map(labels.map((name, i) => [name, i]));\n if (lookup.size !== labels.length) {\n throw Error('Labels must be unique, found duplicated label.');\n }\n return (name: S) => {\n const index = lookup.get(name);\n if (index === undefined) {\n throw Error('Invalid dimension.');\n }\n return index;\n };\n}\n"],"file":"utils.js"}
@@ -1,111 +0,0 @@
1
- import _defineProperty from "@babel/runtime/helpers/esm/defineProperty";
2
- import { getImageSize, isInterleaved, SIGNAL_ABORTED } from './utils/tiff-utils';
3
-
4
- class TiffPixelSource {
5
- constructor(indexer, dtype, tileSize, shape, labels, meta) {
6
- _defineProperty(this, "dtype", void 0);
7
-
8
- _defineProperty(this, "tileSize", void 0);
9
-
10
- _defineProperty(this, "shape", void 0);
11
-
12
- _defineProperty(this, "labels", void 0);
13
-
14
- _defineProperty(this, "meta", void 0);
15
-
16
- _defineProperty(this, "_indexer", void 0);
17
-
18
- this._indexer = indexer;
19
- this.dtype = dtype;
20
- this.tileSize = tileSize;
21
- this.shape = shape;
22
- this.labels = labels;
23
- this.meta = meta;
24
- }
25
-
26
- async getRaster({
27
- selection,
28
- signal
29
- }) {
30
- const image = await this._indexer(selection);
31
- return this._readRasters(image, {
32
- signal
33
- });
34
- }
35
-
36
- async getTile({
37
- x,
38
- y,
39
- selection,
40
- signal
41
- }) {
42
- const {
43
- height,
44
- width
45
- } = this._getTileExtent(x, y);
46
-
47
- const x0 = x * this.tileSize;
48
- const y0 = y * this.tileSize;
49
- const window = [x0, y0, x0 + width, y0 + height];
50
- const image = await this._indexer(selection);
51
- return this._readRasters(image, {
52
- window,
53
- width,
54
- height,
55
- signal
56
- });
57
- }
58
-
59
- async _readRasters(image, props) {
60
- var _props$signal;
61
-
62
- const interleave = isInterleaved(this.shape);
63
- const raster = await image.readRasters({
64
- interleave,
65
- ...props
66
- });
67
-
68
- if (props !== null && props !== void 0 && (_props$signal = props.signal) !== null && _props$signal !== void 0 && _props$signal.aborted) {
69
- throw SIGNAL_ABORTED;
70
- }
71
-
72
- const data = interleave ? raster : raster[0];
73
- return {
74
- data,
75
- width: raster.width,
76
- height: raster.height
77
- };
78
- }
79
-
80
- _getTileExtent(x, y) {
81
- const {
82
- height: zoomLevelHeight,
83
- width: zoomLevelWidth
84
- } = getImageSize(this);
85
- let height = this.tileSize;
86
- let width = this.tileSize;
87
- const maxXTileCoord = Math.floor(zoomLevelWidth / this.tileSize);
88
- const maxYTileCoord = Math.floor(zoomLevelHeight / this.tileSize);
89
-
90
- if (x === maxXTileCoord) {
91
- width = zoomLevelWidth % this.tileSize;
92
- }
93
-
94
- if (y === maxYTileCoord) {
95
- height = zoomLevelHeight % this.tileSize;
96
- }
97
-
98
- return {
99
- height,
100
- width
101
- };
102
- }
103
-
104
- onTileError(err) {
105
- console.error(err);
106
- }
107
-
108
- }
109
-
110
- export default TiffPixelSource;
111
- //# sourceMappingURL=tiff-pixel-source.js.map
@@ -1 +0,0 @@
1
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It's weird, but this seems to work.\n */\n const data = (interleave ? raster : raster[0]) as TypedArray;\n return {\n data,\n width: raster.width,\n height: raster.height\n } as PixelData;\n }\n\n /*\n * Computes tile size given x, y coord.\n */\n private _getTileExtent(x: number, y: number) {\n const {height: zoomLevelHeight, width: zoomLevelWidth} = getImageSize(this);\n let height = this.tileSize;\n let width = this.tileSize;\n const maxXTileCoord = Math.floor(zoomLevelWidth / this.tileSize);\n const maxYTileCoord = Math.floor(zoomLevelHeight / this.tileSize);\n if (x === maxXTileCoord) {\n width = zoomLevelWidth % this.tileSize;\n }\n if (y === maxYTileCoord) {\n height = zoomLevelHeight % this.tileSize;\n }\n return {height, width};\n }\n\n onTileError(err: Error) {\n console.error(err); // eslint-disable-line no-console\n }\n}\n\nexport default TiffPixelSource;\n"],"file":"tiff-pixel-source.js"}
@@ -1,77 +0,0 @@
1
- import _defineProperty from "@babel/runtime/helpers/esm/defineProperty";
2
-
3
- var _globalThis$navigator, _globalThis$navigator2;
4
-
5
- const defaultPoolSize = (_globalThis$navigator = globalThis === null || globalThis === void 0 ? void 0 : (_globalThis$navigator2 = globalThis.navigator) === null || _globalThis$navigator2 === void 0 ? void 0 : _globalThis$navigator2.hardwareConcurrency) !== null && _globalThis$navigator !== void 0 ? _globalThis$navigator : 4;
6
- export default class Pool {
7
- constructor(size = defaultPoolSize) {
8
- _defineProperty(this, "workers", void 0);
9
-
10
- _defineProperty(this, "idleWorkers", void 0);
11
-
12
- _defineProperty(this, "waitQueue", void 0);
13
-
14
- _defineProperty(this, "decoder", void 0);
15
-
16
- this.workers = [];
17
- this.idleWorkers = [];
18
- this.waitQueue = [];
19
- this.decoder = null;
20
-
21
- for (let i = 0; i < size; ++i) {
22
- const w = new Worker('./decoder.worker');
23
- this.workers.push(w);
24
- this.idleWorkers.push(w);
25
- }
26
- }
27
-
28
- async decode(fileDirectory, buffer) {
29
- const currentWorker = await this.waitForWorker();
30
- return new Promise((resolve, reject) => {
31
- currentWorker.onmessage = event => {
32
- this.finishTask(currentWorker);
33
- resolve(event.data[0]);
34
- };
35
-
36
- currentWorker.onerror = error => {
37
- this.finishTask(currentWorker);
38
- reject(error);
39
- };
40
-
41
- currentWorker.postMessage(['decode', fileDirectory, buffer], [buffer]);
42
- });
43
- }
44
-
45
- async waitForWorker() {
46
- const idleWorker = this.idleWorkers.pop();
47
-
48
- if (idleWorker) {
49
- return idleWorker;
50
- }
51
-
52
- const waiter = {};
53
- const promise = new Promise(resolve => {
54
- waiter.resolve = resolve;
55
- });
56
- this.waitQueue.push(waiter);
57
- return promise;
58
- }
59
-
60
- async finishTask(currentWorker) {
61
- const waiter = this.waitQueue.pop();
62
-
63
- if (waiter) {
64
- waiter.resolve(currentWorker);
65
- } else {
66
- this.idleWorkers.push(currentWorker);
67
- }
68
- }
69
-
70
- destroy() {
71
- for (let i = 0; i < this.workers.length; ++i) {
72
- this.workers[i].terminate();
73
- }
74
- }
75
-
76
- }
77
- //# sourceMappingURL=Pool.js.map
@@ -1 +0,0 @@
1
- {"version":3,"sources":["../../../../src/lib/utils/Pool.ts"],"names":["defaultPoolSize","globalThis","navigator","hardwareConcurrency","Pool","constructor","size","workers","idleWorkers","waitQueue","decoder","i","w","Worker","push","decode","fileDirectory","buffer","currentWorker","waitForWorker","Promise","resolve","reject","onmessage","event","finishTask","data","onerror","error","postMessage","idleWorker","pop","waiter","promise","destroy","length","terminate"],"mappings":";;;;AASA,MAAMA,eAAe,4BAAGC,UAAH,aAAGA,UAAH,iDAAGA,UAAU,CAAEC,SAAf,2DAAG,uBAAuBC,mBAA1B,yEAAiD,CAAtE;AAMA,eAAe,MAAMC,IAAN,CAAW;AAYxBC,EAAAA,WAAW,CAACC,IAAI,GAAGN,eAAR,EAAyB;AAAA;;AAAA;;AAAA;;AAAA;;AAClC,SAAKO,OAAL,GAAe,EAAf;AACA,SAAKC,WAAL,GAAmB,EAAnB;AACA,SAAKC,SAAL,GAAiB,EAAjB;AACA,SAAKC,OAAL,GAAe,IAAf;;AAGA,SAAK,IAAIC,CAAC,GAAG,CAAb,EAAgBA,CAAC,GAAGL,IAApB,EAA0B,EAAEK,CAA5B,EAA+B;AAC7B,YAAMC,CAAC,GAAG,IAAIC,MAAJ,CAAW,kBAAX,CAAV;AACA,WAAKN,OAAL,CAAaO,IAAb,CAAkBF,CAAlB;AACA,WAAKJ,WAAL,CAAiBM,IAAjB,CAAsBF,CAAtB;AACD;AACF;;AAOW,QAANG,MAAM,CAACC,aAAD,EAA+BC,MAA/B,EAAoD;AAC9D,UAAMC,aAAa,GAAG,MAAM,KAAKC,aAAL,EAA5B;AACA,WAAO,IAAIC,OAAJ,CAAY,CAACC,OAAD,EAAUC,MAAV,KAAqB;AACtCJ,MAAAA,aAAa,CAACK,SAAd,GAA2BC,KAAD,IAAW;AAGnC,aAAKC,UAAL,CAAgBP,aAAhB;AACAG,QAAAA,OAAO,CAACG,KAAK,CAACE,IAAN,CAAW,CAAX,CAAD,CAAP;AACD,OALD;;AAMAR,MAAAA,aAAa,CAACS,OAAd,GAAyBC,KAAD,IAAW;AAGjC,aAAKH,UAAL,CAAgBP,aAAhB;AACAI,QAAAA,MAAM,CAACM,KAAD,CAAN;AACD,OALD;;AAMAV,MAAAA,aAAa,CAACW,WAAd,CAA0B,CAAC,QAAD,EAAWb,aAAX,EAA0BC,MAA1B,CAA1B,EAA6D,CAACA,MAAD,CAA7D;AACD,KAdM,CAAP;AAeD;;AAEkB,QAAbE,aAAa,GAAG;AACpB,UAAMW,UAAU,GAAG,KAAKtB,WAAL,CAAiBuB,GAAjB,EAAnB;;AACA,QAAID,UAAJ,EAAgB;AACd,aAAOA,UAAP;AACD;;AACD,UAAME,MAAW,GAAG,EAApB;AACA,UAAMC,OAAO,GAAG,IAAIb,OAAJ,CAAaC,OAAD,IAAa;AACvCW,MAAAA,MAAM,CAACX,OAAP,GAAiBA,OAAjB;AACD,KAFe,CAAhB;AAIA,SAAKZ,SAAL,CAAeK,IAAf,CAAoBkB,MAApB;AACA,WAAOC,OAAP;AACD;;AAEe,QAAVR,UAAU,CAACP,aAAD,EAAwB;AACtC,UAAMc,MAAM,GAAG,KAAKvB,SAAL,CAAesB,GAAf,EAAf;;AACA,QAAIC,MAAJ,EAAY;AACVA,MAAAA,MAAM,CAACX,OAAP,CAAeH,aAAf;AACD,KAFD,MAEO;AACL,WAAKV,WAAL,CAAiBM,IAAjB,CAAsBI,aAAtB;AACD;AACF;;AAEDgB,EAAAA,OAAO,GAAG;AAER,SAAK,IAAIvB,CAAC,GAAG,CAAb,EAAgBA,CAAC,GAAG,KAAKJ,OAAL,CAAa4B,MAAjC,EAAyC,EAAExB,CAA3C,EAA8C;AAC5C,WAAKJ,OAAL,CAAaI,CAAb,EAAgByB,SAAhB;AACD;AACF;;AA9EuB","sourcesContent":["/** eslint-disable */\nimport type {FileDirectory} from 'geotiff';\n\n// import Worker from 'web-worker:./decoder.worker.ts';\n\n// https://developer.mozilla.org/en-US/docs/Web/API/NavigatorConcurrentHardware/hardwareConcurrency\n// We need to give a different way of getting this for safari, so 4 is probably a safe bet\n// for parallel processing in the meantime. More can't really hurt since they'll just block\n// each other and not the UI thread, which is the real benefit.\nconst defaultPoolSize = globalThis?.navigator?.hardwareConcurrency ?? 4;\n\n/**\n * Pool for workers to decode chunks of the images.\n * This is a line-for-line copy of GeoTIFFs old implementation: https://github.com/geotiffjs/geotiff.js/blob/v1.0.0-beta.6/src/pool.js\n */\nexport default class Pool {\n workers: Worker[];\n idleWorkers: Worker[];\n waitQueue: any[];\n decoder: null;\n\n /**\n * @constructor\n * @param {Number} size The size of the pool. Defaults to the number of CPUs\n * available. When this parameter is `null` or 0, then the\n * decoding will be done in the main thread.\n */\n constructor(size = defaultPoolSize) {\n this.workers = [];\n this.idleWorkers = [];\n this.waitQueue = [];\n this.decoder = null;\n\n // eslint-disable-next-line no-plusplus\n for (let i = 0; i < size; ++i) {\n const w = new Worker('./decoder.worker');\n this.workers.push(w);\n this.idleWorkers.push(w);\n }\n }\n\n /**\n * Decode the given block of bytes with the set compression method.\n * @param {ArrayBuffer} buffer the array buffer of bytes to decode.\n * @returns {Promise.<ArrayBuffer>} the decoded result as a `Promise`\n */\n async decode(fileDirectory: FileDirectory, buffer: ArrayBuffer) {\n const currentWorker = await this.waitForWorker();\n return new Promise((resolve, reject) => {\n currentWorker.onmessage = (event) => {\n // this.workers.push(currentWorker);\n // eslint-disable-next-line\n this.finishTask(currentWorker);\n resolve(event.data[0]);\n };\n currentWorker.onerror = (error) => {\n // this.workers.push(currentWorker);\n // eslint-disable-next-line\n this.finishTask(currentWorker);\n reject(error);\n };\n currentWorker.postMessage(['decode', fileDirectory, buffer], [buffer]);\n });\n }\n\n async waitForWorker() {\n const idleWorker = this.idleWorkers.pop();\n if (idleWorker) {\n return idleWorker;\n }\n const waiter: any = {};\n const promise = new Promise((resolve) => {\n waiter.resolve = resolve;\n });\n\n this.waitQueue.push(waiter);\n return promise as Promise<Worker>;\n }\n\n async finishTask(currentWorker: Worker) {\n const waiter = this.waitQueue.pop();\n if (waiter) {\n waiter.resolve(currentWorker);\n } else {\n this.idleWorkers.push(currentWorker);\n }\n }\n\n destroy() {\n // eslint-disable-next-line no-plusplus\n for (let i = 0; i < this.workers.length; ++i) {\n this.workers[i].terminate();\n }\n }\n}\n"],"file":"Pool.js"}
@@ -1,21 +0,0 @@
1
- import type { FileDirectory } from 'geotiff';
2
- import { getDecoder } from 'geotiff/src/compression';
3
-
4
- async function decode(fileDirectory: FileDirectory, buffer: ArrayBuffer) {
5
- const decoder = getDecoder(fileDirectory);
6
- const result = await decoder.decode(fileDirectory, buffer);
7
- self.postMessage(result, [result] as any);
8
- }
9
-
10
- if (typeof self !== 'undefined') {
11
- self.addEventListener('message', event => {
12
- const [name, ...args] = event.data;
13
- switch (name) {
14
- case 'decode':
15
- decode(args[0], args[1]);
16
- break;
17
- default:
18
- break;
19
- }
20
- });
21
- }
@@ -1,63 +0,0 @@
1
- const VIV_PROXY_KEY = '__viv';
2
- const OFFSETS_PROXY_KEY = "".concat(VIV_PROXY_KEY, "-offsets");
3
- const POOL_PROXY_KEY = "".concat(VIV_PROXY_KEY, "-decoder-pool");
4
- export function checkProxies(tiff) {
5
- if (!isProxy(tiff, OFFSETS_PROXY_KEY)) {
6
- console.warn('GeoTIFF source is missing offsets proxy.');
7
- }
8
-
9
- if (!isProxy(tiff, POOL_PROXY_KEY)) {
10
- console.warn('GeoTIFF source is missing decoder-pool proxy.');
11
- }
12
- }
13
-
14
- function isProxy(tiff, proxyFlag) {
15
- return tiff[proxyFlag];
16
- }
17
-
18
- export function createOffsetsProxy(tiff, offsets) {
19
- const get = (target, key) => {
20
- if (key === 'getImage') {
21
- return index => {
22
- if (!(index in target.ifdRequests) && index in offsets) {
23
- const offset = offsets[index];
24
- target.ifdRequests[index] = target.parseFileDirectoryAt(offset);
25
- }
26
-
27
- return target.getImage(index);
28
- };
29
- }
30
-
31
- if (key === OFFSETS_PROXY_KEY) {
32
- return true;
33
- }
34
-
35
- return Reflect.get(target, key);
36
- };
37
-
38
- return new Proxy(tiff, {
39
- get
40
- });
41
- }
42
- export function createPoolProxy(tiff, pool) {
43
- const get = (target, key) => {
44
- if (key === 'readRasters') {
45
- return options => {
46
- return target.readRasters({ ...options,
47
- pool
48
- });
49
- };
50
- }
51
-
52
- if (key === POOL_PROXY_KEY) {
53
- return true;
54
- }
55
-
56
- return Reflect.get(target, key);
57
- };
58
-
59
- return new Proxy(tiff, {
60
- get
61
- });
62
- }
63
- //# sourceMappingURL=proxies.js.map
@@ -1 +0,0 @@
1
- {"version":3,"sources":["../../../../src/lib/utils/proxies.ts"],"names":["VIV_PROXY_KEY","OFFSETS_PROXY_KEY","POOL_PROXY_KEY","checkProxies","tiff","isProxy","console","warn","proxyFlag","createOffsetsProxy","offsets","get","target","key","index","ifdRequests","offset","parseFileDirectoryAt","getImage","Reflect","Proxy","createPoolProxy","pool","options","readRasters"],"mappings":"AAGA,MAAMA,aAAa,GAAG,OAAtB;AACA,MAAMC,iBAAiB,aAAMD,aAAN,aAAvB;AACA,MAAME,cAAc,aAAMF,aAAN,kBAApB;AAMA,OAAO,SAASG,YAAT,CAAsBC,IAAtB,EAAqC;AAC1C,MAAI,CAACC,OAAO,CAACD,IAAD,EAAOH,iBAAP,CAAZ,EAAuC;AACrCK,IAAAA,OAAO,CAACC,IAAR,CAAa,0CAAb;AACD;;AAED,MAAI,CAACF,OAAO,CAACD,IAAD,EAAOF,cAAP,CAAZ,EAAoC;AAClCI,IAAAA,OAAO,CAACC,IAAR,CAAa,+CAAb;AACD;AACF;;AAOD,SAASF,OAAT,CAAiBD,IAAjB,EAAgCI,SAAhC,EAAmD;AACjD,SAAQJ,IAAD,CAAcI,SAAd,CAAP;AACD;;AAYD,OAAO,SAASC,kBAAT,CAA4BL,IAA5B,EAA2CM,OAA3C,EAA8D;AACnE,QAAMC,GAAG,GAAG,CAACC,MAAD,EAAkBC,GAAlB,KAA+B;AAEzC,QAAIA,GAAG,KAAK,UAAZ,EAAwB;AACtB,aAAQC,KAAD,IAAmB;AAExB,YAAI,EAAEA,KAAK,IAAIF,MAAM,CAACG,WAAlB,KAAkCD,KAAK,IAAIJ,OAA/C,EAAwD;AACtD,gBAAMM,MAAM,GAAGN,OAAO,CAACI,KAAD,CAAtB;AACAF,UAAAA,MAAM,CAACG,WAAP,CAAmBD,KAAnB,IAA4BF,MAAM,CAACK,oBAAP,CAA4BD,MAA5B,CAA5B;AACD;;AACD,eAAOJ,MAAM,CAACM,QAAP,CAAgBJ,KAAhB,CAAP;AACD,OAPD;AAQD;;AAGD,QAAID,GAAG,KAAKZ,iBAAZ,EAA+B;AAC7B,aAAO,IAAP;AACD;;AAED,WAAOkB,OAAO,CAACR,GAAR,CAAYC,MAAZ,EAAoBC,GAApB,CAAP;AACD,GAnBD;;AAoBA,SAAO,IAAIO,KAAJ,CAAUhB,IAAV,EAAgB;AAACO,IAAAA;AAAD,GAAhB,CAAP;AACD;AAUD,OAAO,SAASU,eAAT,CAAyBjB,IAAzB,EAAwCkB,IAAxC,EAAoD;AACzD,QAAMX,GAAG,GAAG,CAACC,MAAD,EAAkBC,GAAlB,KAA+B;AAEzC,QAAIA,GAAG,KAAK,aAAZ,EAA2B;AACzB,aAAQU,OAAD,IAAoD;AAGzD,eAAOX,MAAM,CAACY,WAAP,CAAmB,EAAC,GAAGD,OAAJ;AAAaD,UAAAA;AAAb,SAAnB,CAAP;AACD,OAJD;AAKD;;AAGD,QAAIT,GAAG,KAAKX,cAAZ,EAA4B;AAC1B,aAAO,IAAP;AACD;;AAED,WAAOiB,OAAO,CAACR,GAAR,CAAYC,MAAZ,EAAoBC,GAApB,CAAP;AACD,GAhBD;;AAiBA,SAAO,IAAIO,KAAJ,CAAUhB,IAAV,EAAgB;AAACO,IAAAA;AAAD,GAAhB,CAAP;AACD","sourcesContent":["import type {GeoTIFF} from 'geotiff';\nimport type Pool from './Pool';\n\nconst VIV_PROXY_KEY = '__viv';\nconst OFFSETS_PROXY_KEY = `${VIV_PROXY_KEY}-offsets` as const;\nconst POOL_PROXY_KEY = `${VIV_PROXY_KEY}-decoder-pool` as const;\n\n/*\n * Inspect if the GeoTIFF source is wrapped in our proxies,\n * and warn if missing.\n */\nexport function checkProxies(tiff: GeoTIFF) {\n if (!isProxy(tiff, OFFSETS_PROXY_KEY)) {\n console.warn('GeoTIFF source is missing offsets proxy.'); // eslint-disable-line no-console\n }\n\n if (!isProxy(tiff, POOL_PROXY_KEY)) {\n console.warn('GeoTIFF source is missing decoder-pool proxy.'); // eslint-disable-line no-console\n }\n}\n\n/*\n * > isProxy(tiff, POOL_PROXY_KEY) === true; // false\n * > tiff = createPoolProxy(tiff, new Pool());\n * > isProxy(tiff, POOL_PROXY_KEY) === true; // true\n */\nfunction isProxy(tiff: GeoTIFF, proxyFlag: string) {\n return (tiff as any)[proxyFlag] as boolean;\n}\n\n/*\n * Creates an ES6 Proxy that wraps a GeoTIFF object. The proxy\n * handler intercepts calls to `tiff.getImage` and uses our custom\n * pre-computed offsets to pre-fetch the correct file directory.\n *\n * This is a bit of a hack. Internally GeoTIFF inspects `this.ifdRequests`\n * to see which fileDirectories need to be traversed. By adding the\n * ifdRequest for an 'index' manually, GeoTIFF will await that request\n * rather than traversing the file system remotely.\n */\nexport function createOffsetsProxy(tiff: GeoTIFF, offsets: number[]) {\n const get = (target: GeoTIFF, key: any) => {\n // Intercept `tiff.getImage`\n if (key === 'getImage') {\n return (index: number) => {\n // Manually add ifdRequest to tiff if missing and we have an offset.\n if (!(index in target.ifdRequests) && index in offsets) {\n const offset = offsets[index];\n target.ifdRequests[index] = target.parseFileDirectoryAt(offset);\n }\n return target.getImage(index);\n };\n }\n\n // tiff['__viv-offsets'] === true\n if (key === OFFSETS_PROXY_KEY) {\n return true;\n }\n\n return Reflect.get(target, key);\n };\n return new Proxy(tiff, {get});\n}\n\n/*\n * Creates an ES6 Proxy that wraps a GeoTIFF object. The proxy\n * handler intercepts calls to `tiff.readRasters` and injects\n * a pool argument to every call. This means our TiffPixelSource\n * doesn't need to be aware of whether a decoder pool is in use.\n *\n * > tiff.readRasters({ window }) -> tiff.readRasters({ window, pool });\n */\nexport function createPoolProxy(tiff: GeoTIFF, pool: Pool) {\n const get = (target: GeoTIFF, key: any) => {\n // Intercept calls to `image.readRasters`\n if (key === 'readRasters') {\n return (options: Parameters<typeof target.readRasters>) => {\n // Inject `pool` argument with other raster options.\n // @ts-ignore\n return target.readRasters({...options, pool});\n };\n }\n\n // tiff['__viv-decoder-pool'] === true\n if (key === POOL_PROXY_KEY) {\n return true;\n }\n\n return Reflect.get(target, key);\n };\n return new Proxy(tiff, {get});\n}\n"],"file":"proxies.js"}
@@ -1,28 +0,0 @@
1
- export function ensureArray(x) {
2
- return Array.isArray(x) ? x : [x];
3
- }
4
- export function intToRgba(int) {
5
- if (!Number.isInteger(int)) {
6
- throw Error('Not an integer.');
7
- }
8
-
9
- const buffer = new ArrayBuffer(4);
10
- const view = new DataView(buffer);
11
- view.setInt32(0, int, false);
12
- const bytes = new Uint8Array(buffer);
13
- return Array.from(bytes);
14
- }
15
- export function isInterleaved(shape) {
16
- const lastDimSize = shape[shape.length - 1];
17
- return lastDimSize === 3 || lastDimSize === 4;
18
- }
19
- export function getImageSize(source) {
20
- const interleaved = isInterleaved(source.shape);
21
- const [height, width] = source.shape.slice(interleaved ? -3 : -2);
22
- return {
23
- height,
24
- width
25
- };
26
- }
27
- export const SIGNAL_ABORTED = '__vivSignalAborted';
28
- //# sourceMappingURL=tiff-utils.js.map
@@ -1 +0,0 @@
1
- {"version":3,"sources":["../../../../src/lib/utils/tiff-utils.ts"],"names":["ensureArray","x","Array","isArray","intToRgba","int","Number","isInteger","Error","buffer","ArrayBuffer","view","DataView","setInt32","bytes","Uint8Array","from","isInterleaved","shape","lastDimSize","length","getImageSize","source","interleaved","height","width","slice","SIGNAL_ABORTED"],"mappings":"AAEA,OAAO,SAASA,WAAT,CAAwBC,CAAxB,EAAoC;AACzC,SAAOC,KAAK,CAACC,OAAN,CAAcF,CAAd,IAAmBA,CAAnB,GAAuB,CAACA,CAAD,CAA9B;AACD;AASD,OAAO,SAASG,SAAT,CAAmBC,GAAnB,EAAgC;AACrC,MAAI,CAACC,MAAM,CAACC,SAAP,CAAiBF,GAAjB,CAAL,EAA4B;AAC1B,UAAMG,KAAK,CAAC,iBAAD,CAAX;AACD;;AAGD,QAAMC,MAAM,GAAG,IAAIC,WAAJ,CAAgB,CAAhB,CAAf;AACA,QAAMC,IAAI,GAAG,IAAIC,QAAJ,CAAaH,MAAb,CAAb;AACAE,EAAAA,IAAI,CAACE,QAAL,CAAc,CAAd,EAAiBR,GAAjB,EAAsB,KAAtB;AAGA,QAAMS,KAAK,GAAG,IAAIC,UAAJ,CAAeN,MAAf,CAAd;AACA,SAAOP,KAAK,CAACc,IAAN,CAAWF,KAAX,CAAP;AACD;AAOD,OAAO,SAASG,aAAT,CAAuBC,KAAvB,EAAwC;AAC7C,QAAMC,WAAW,GAAGD,KAAK,CAACA,KAAK,CAACE,MAAN,GAAe,CAAhB,CAAzB;AACA,SAAOD,WAAW,KAAK,CAAhB,IAAqBA,WAAW,KAAK,CAA5C;AACD;AAED,OAAO,SAASE,YAAT,CAA0CC,MAA1C,EAAkE;AACvE,QAAMC,WAAW,GAAGN,aAAa,CAACK,MAAM,CAACJ,KAAR,CAAjC;AACA,QAAM,CAACM,MAAD,EAASC,KAAT,IAAkBH,MAAM,CAACJ,KAAP,CAAaQ,KAAb,CAAmBH,WAAW,GAAG,CAAC,CAAJ,GAAQ,CAAC,CAAvC,CAAxB;AACA,SAAO;AAACC,IAAAA,MAAD;AAASC,IAAAA;AAAT,GAAP;AACD;AAED,OAAO,MAAME,cAAc,GAAG,oBAAvB","sourcesContent":["import type {PixelSource} from '../../types';\n\nexport function ensureArray<T>(x: T | T[]) {\n return Array.isArray(x) ? x : [x];\n}\n\n/*\n * Converts 32-bit integer color representation to RGBA tuple.\n * Used to serialize colors from OME-XML metadata.\n *\n * > console.log(intToRgba(100100));\n * > // [0, 1, 135, 4]\n */\nexport function intToRgba(int: number) {\n if (!Number.isInteger(int)) {\n throw Error('Not an integer.');\n }\n\n // Write number to int32 representation (4 bytes).\n const buffer = new ArrayBuffer(4);\n const view = new DataView(buffer);\n view.setInt32(0, int, false); // offset === 0, littleEndian === false\n\n // Take u8 view and extract number for each byte (1 byte for R/G/B/A).\n const bytes = new Uint8Array(buffer);\n return Array.from(bytes) as [number, number, number, number];\n}\n\n/*\n * Helper method to determine whether pixel data is interleaved or not.\n * > isInterleaved([1, 24, 24]) === false;\n * > isInterleaved([1, 24, 24, 3]) === true;\n */\nexport function isInterleaved(shape: number[]) {\n const lastDimSize = shape[shape.length - 1];\n return lastDimSize === 3 || lastDimSize === 4;\n}\n\nexport function getImageSize<T extends string[]>(source: PixelSource<T>) {\n const interleaved = isInterleaved(source.shape);\n const [height, width] = source.shape.slice(interleaved ? -3 : -2);\n return {height, width};\n}\n\nexport const SIGNAL_ABORTED = '__vivSignalAborted';\n"],"file":"tiff-utils.js"}
package/dist/esm/types.js DELETED
@@ -1,2 +0,0 @@
1
- export {};
2
- //# sourceMappingURL=types.js.map
@@ -1 +0,0 @@
1
- {"version":3,"sources":[],"names":[],"mappings":"","sourcesContent":[],"file":"types.js"}
@@ -1,2 +0,0 @@
1
-
2
- //# sourceMappingURL=geotiff.js.map
@@ -1 +0,0 @@
1
- {"version":3,"sources":[],"names":[],"mappings":"","sourcesContent":[],"file":"geotiff.js"}