@loaders.gl/geotiff 3.0.10 → 3.0.14
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/esm/lib/ome/ome-indexers.js +2 -2
- package/dist/esm/lib/ome/ome-indexers.js.map +1 -1
- package/dist/esm/lib/ome/ome-utils.js +1 -1
- package/dist/esm/lib/ome/ome-utils.js.map +1 -1
- package/dist/esm/lib/ome/omexml.js +5 -5
- package/dist/esm/lib/ome/omexml.js.map +1 -1
- package/dist/esm/lib/utils/proxies.js +2 -2
- package/dist/esm/lib/utils/proxies.js.map +1 -1
- package/package.json +2 -2
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@@ -32,7 +32,7 @@ export function getOmeSubIFDIndexer(tiff, rootMeta) {
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throw Error('Indexing Error: OME-TIFF is missing SubIFDs.');
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}
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const key =
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const key = "".concat(sel.t, "-").concat(sel.c, "-").concat(sel.z, "-").concat(pyramidLevel);
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if (!ifdCache.has(key)) {
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const subIfdOffset = SubIFDs[pyramidLevel - 1];
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@@ -109,7 +109,7 @@ function getOmeIFDIndexer(imgMeta) {
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default:
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{
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throw new Error(
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throw new Error("Invalid OME-XML DimensionOrder, got ".concat(DimensionOrder, "."));
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}
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}
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}
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@@ -1 +1 @@
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-
{"version":3,"sources":["../../../../src/lib/ome/ome-indexers.ts"],"names":["getOmeLegacyIndexer","tiff","rootMeta","imgMeta","SizeT","SizeC","SizeZ","Pixels","ifdIndexer","getOmeIFDIndexer","sel","pyramidLevel","index","pyramidIndex","getImage","getOmeSubIFDIndexer","ifdCache","Map","baseImage","SubIFDs","fileDirectory","Error","key","t","c","z","has","subIfdOffset","set","parseFileDirectoryAt","ifd","get","constructor","geoKeyDirectory","dataView","littleEndian","cache","source","DimensionOrder"],"mappings":"AAyBA,OAAO,SAASA,mBAAT,CAA6BC,IAA7B,EAA4CC,QAA5C,EAA8E;AACnF,QAAMC,OAAO,GAAGD,QAAQ,CAAC,CAAD,CAAxB;AACA,QAAM;AAACE,IAAAA,KAAD;AAAQC,IAAAA,KAAR;AAAeC,IAAAA;AAAf,MAAwBH,OAAO,CAACI,MAAtC;AACA,QAAMC,UAAU,GAAGC,gBAAgB,CAACN,OAAD,CAAnC;AAEA,SAAO,CAACO,GAAD,EAAwBC,YAAxB,KAAiD;AAEtD,UAAMC,KAAK,GAAGJ,UAAU,CAACE,GAAD,CAAxB;AAEA,UAAMG,YAAY,GAAGF,YAAY,GAAGL,KAAf,GAAuBF,KAAvB,GAA+BC,KAApD;AAEA,WAAOJ,IAAI,CAACa,QAAL,CAAcF,KAAK,GAAGC,YAAtB,CAAP;AACD,GAPD;AAQD;AAgBD,OAAO,SAASE,mBAAT,CAA6Bd,IAA7B,EAA4CC,QAA5C,EAA8E;AACnF,QAAMC,OAAO,GAAGD,QAAQ,CAAC,CAAD,CAAxB;AACA,QAAMM,UAAU,GAAGC,gBAAgB,CAACN,OAAD,CAAnC;AACA,QAAMa,QAAkD,GAAG,IAAIC,GAAJ,EAA3D;AAEA,SAAO,OAAOP,GAAP,EAA8BC,YAA9B,KAAuD;AAC5D,UAAMC,KAAK,GAAGJ,UAAU,CAACE,GAAD,CAAxB;AACA,UAAMQ,SAAS,GAAG,MAAMjB,IAAI,CAACa,QAAL,CAAcF,KAAd,CAAxB;;AAGA,QAAID,YAAY,KAAK,CAArB,EAAwB;AACtB,aAAOO,SAAP;AACD;;AAED,UAAM;AAACC,MAAAA;AAAD,QAAYD,SAAS,CAACE,aAA5B;;AACA,QAAI,CAACD,OAAL,EAAc;AACZ,YAAME,KAAK,CAAC,8CAAD,CAAX;AACD;;AAGD,UAAMC,GAAG,
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{"version":3,"sources":["../../../../src/lib/ome/ome-indexers.ts"],"names":["getOmeLegacyIndexer","tiff","rootMeta","imgMeta","SizeT","SizeC","SizeZ","Pixels","ifdIndexer","getOmeIFDIndexer","sel","pyramidLevel","index","pyramidIndex","getImage","getOmeSubIFDIndexer","ifdCache","Map","baseImage","SubIFDs","fileDirectory","Error","key","t","c","z","has","subIfdOffset","set","parseFileDirectoryAt","ifd","get","constructor","geoKeyDirectory","dataView","littleEndian","cache","source","DimensionOrder"],"mappings":"AAyBA,OAAO,SAASA,mBAAT,CAA6BC,IAA7B,EAA4CC,QAA5C,EAA8E;AACnF,QAAMC,OAAO,GAAGD,QAAQ,CAAC,CAAD,CAAxB;AACA,QAAM;AAACE,IAAAA,KAAD;AAAQC,IAAAA,KAAR;AAAeC,IAAAA;AAAf,MAAwBH,OAAO,CAACI,MAAtC;AACA,QAAMC,UAAU,GAAGC,gBAAgB,CAACN,OAAD,CAAnC;AAEA,SAAO,CAACO,GAAD,EAAwBC,YAAxB,KAAiD;AAEtD,UAAMC,KAAK,GAAGJ,UAAU,CAACE,GAAD,CAAxB;AAEA,UAAMG,YAAY,GAAGF,YAAY,GAAGL,KAAf,GAAuBF,KAAvB,GAA+BC,KAApD;AAEA,WAAOJ,IAAI,CAACa,QAAL,CAAcF,KAAK,GAAGC,YAAtB,CAAP;AACD,GAPD;AAQD;AAgBD,OAAO,SAASE,mBAAT,CAA6Bd,IAA7B,EAA4CC,QAA5C,EAA8E;AACnF,QAAMC,OAAO,GAAGD,QAAQ,CAAC,CAAD,CAAxB;AACA,QAAMM,UAAU,GAAGC,gBAAgB,CAACN,OAAD,CAAnC;AACA,QAAMa,QAAkD,GAAG,IAAIC,GAAJ,EAA3D;AAEA,SAAO,OAAOP,GAAP,EAA8BC,YAA9B,KAAuD;AAC5D,UAAMC,KAAK,GAAGJ,UAAU,CAACE,GAAD,CAAxB;AACA,UAAMQ,SAAS,GAAG,MAAMjB,IAAI,CAACa,QAAL,CAAcF,KAAd,CAAxB;;AAGA,QAAID,YAAY,KAAK,CAArB,EAAwB;AACtB,aAAOO,SAAP;AACD;;AAED,UAAM;AAACC,MAAAA;AAAD,QAAYD,SAAS,CAACE,aAA5B;;AACA,QAAI,CAACD,OAAL,EAAc;AACZ,YAAME,KAAK,CAAC,8CAAD,CAAX;AACD;;AAGD,UAAMC,GAAG,aAAMZ,GAAG,CAACa,CAAV,cAAeb,GAAG,CAACc,CAAnB,cAAwBd,GAAG,CAACe,CAA5B,cAAiCd,YAAjC,CAAT;;AACA,QAAI,CAACK,QAAQ,CAACU,GAAT,CAAaJ,GAAb,CAAL,EAAwB;AAEtB,YAAMK,YAAY,GAAGR,OAAO,CAACR,YAAY,GAAG,CAAhB,CAA5B;AACAK,MAAAA,QAAQ,CAACY,GAAT,CAAaN,GAAb,EAAkBrB,IAAI,CAAC4B,oBAAL,CAA0BF,YAA1B,CAAlB;AACD;;AACD,UAAMG,GAAG,GAAI,MAAMd,QAAQ,CAACe,GAAT,CAAaT,GAAb,CAAnB;AAIA,WAAO,IAAKJ,SAAS,CAACc,WAAf,CACLF,GAAG,CAACV,aADC,EAELU,GAAG,CAACG,eAFC,EAGLhC,IAAI,CAACiC,QAHA,EAILjC,IAAI,CAACkC,YAJA,EAKLlC,IAAI,CAACmC,KALA,EAMLnC,IAAI,CAACoC,MANA,CAAP;AAQD,GAjCD;AAkCD;;AAMD,SAAS5B,gBAAT,CAA0BN,OAA1B,EAAiF;AAC/E,QAAM;AAACE,IAAAA,KAAD;AAAQC,IAAAA,KAAR;AAAeF,IAAAA,KAAf;AAAsBkC,IAAAA;AAAtB,MAAwCnC,OAAO,CAACI,MAAtD;;AACA,UAAQ+B,cAAR;AACE,SAAK,OAAL;AAAc;AACZ,eAAO,CAAC;AAACf,UAAAA,CAAD;AAAIC,UAAAA,CAAJ;AAAOC,UAAAA;AAAP,SAAD,KAAeF,CAAC,GAAGjB,KAAJ,GAAYD,KAAZ,GAAoBmB,CAAC,GAAGlB,KAAxB,GAAgCmB,CAAtD;AACD;;AACD,SAAK,OAAL;AAAc;AACZ,eAAO,CAAC;AAACF,UAAAA,CAAD;AAAIC,UAAAA,CAAJ;AAAOC,UAAAA;AAAP,SAAD,KAAeD,CAAC,GAAGlB,KAAJ,GAAYF,KAAZ,GAAoBmB,CAAC,GAAGjB,KAAxB,GAAgCmB,CAAtD;AACD;;AACD,SAAK,OAAL;AAAc;AACZ,eAAO,CAAC;AAACF,UAAAA,CAAD;AAAIC,UAAAA,CAAJ;AAAOC,UAAAA;AAAP,SAAD,KAAeA,CAAC,GAAGpB,KAAJ,GAAYD,KAAZ,GAAoBmB,CAAC,GAAGlB,KAAxB,GAAgCmB,CAAtD;AACD;;AACD,SAAK,OAAL;AAAc;AACZ,eAAO,CAAC;AAACD,UAAAA,CAAD;AAAIC,UAAAA,CAAJ;AAAOC,UAAAA;AAAP,SAAD,KAAeF,CAAC,GAAGlB,KAAJ,GAAYC,KAAZ,GAAoBmB,CAAC,GAAGpB,KAAxB,GAAgCmB,CAAtD;AACD;;AACD,SAAK,OAAL;AAAc;AACZ,eAAO,CAAC;AAACD,UAAAA,CAAD;AAAIC,UAAAA,CAAJ;AAAOC,UAAAA;AAAP,SAAD,KAAeA,CAAC,GAAGrB,KAAJ,GAAYC,KAAZ,GAAoBmB,CAAC,GAAGpB,KAAxB,GAAgCmB,CAAtD;AACD;;AACD,SAAK,OAAL;AAAc;AACZ,eAAO,CAAC;AAACA,UAAAA,CAAD;AAAIC,UAAAA,CAAJ;AAAOC,UAAAA;AAAP,SAAD,KAAeD,CAAC,GAAGpB,KAAJ,GAAYE,KAAZ,GAAoBmB,CAAC,GAAGrB,KAAxB,GAAgCmB,CAAtD;AACD;;AACD;AAAS;AACP,cAAM,IAAIF,KAAJ,+CAAiDiB,cAAjD,OAAN;AACD;AArBH;AAuBD","sourcesContent":["import type {GeoTIFFImage, GeoTIFF, ImageFileDirectory} from 'geotiff';\nimport type {OMEXML} from '../ome/omexml';\n\nexport type OmeTiffSelection = {t: number; c: number; z: number};\nexport type OmeTiffIndexer = (sel: OmeTiffSelection, z: number) => Promise<GeoTIFFImage>;\n\n/*\n * An \"indexer\" for a GeoTIFF-based source is a function that takes a\n * \"selection\" (e.g. { z, t, c }) and returns a Promise for the GeoTIFFImage\n * object corresponding to that selection.\n *\n * For OME-TIFF images, the \"selection\" object is the same regardless of\n * the format version. However, modern version of Bioformats have a different\n * memory layout for pyramidal resolutions. Thus, we have two different \"indexers\"\n * depending on which format version is detected.\n *\n * TODO: We currently only support indexing the first image in the OME-TIFF with\n * our indexers. There can be multiple images in an OME-TIFF, so supporting these\n * images will require extending these indexers or creating new methods.\n */\n\n/*\n * Returns an indexer for legacy Bioformats images. This assumes that\n * downsampled resolutions are stored sequentially in the OME-TIFF.\n */\nexport function getOmeLegacyIndexer(tiff: GeoTIFF, rootMeta: OMEXML): OmeTiffIndexer {\n const imgMeta = rootMeta[0];\n const {SizeT, SizeC, SizeZ} = imgMeta.Pixels;\n const ifdIndexer = getOmeIFDIndexer(imgMeta);\n\n return (sel: OmeTiffSelection, pyramidLevel: number) => {\n // Get IFD index at base pyramid level\n const index = ifdIndexer(sel);\n // Get index of first image at pyramidal level\n const pyramidIndex = pyramidLevel * SizeZ * SizeT * SizeC;\n // Return image at IFD index for pyramidal level\n return tiff.getImage(index + pyramidIndex);\n };\n}\n\n/*\n * Returns an indexer for modern Bioforamts images that store multiscale\n * resolutions using SubIFDs.\n *\n * The ifdIndexer returns the 'index' to the base resolution for a\n * particular 'selection'. The SubIFDs to the downsampled resolutions\n * of the 'selection' are stored within the `baseImage.fileDirectory`.\n * We use the SubIFDs to get the IFD for the corresponding sub-resolution.\n *\n * NOTE: This function create a custom IFD cache rather than mutating\n * `GeoTIFF.ifdRequests` with a random offset. The IFDs are cached in\n * an ES6 Map that maps a string key that identifies the selection uniquely\n * to the corresponding IFD.\n */\nexport function getOmeSubIFDIndexer(tiff: GeoTIFF, rootMeta: OMEXML): OmeTiffIndexer {\n const imgMeta = rootMeta[0];\n const ifdIndexer = getOmeIFDIndexer(imgMeta);\n const ifdCache: Map<string, Promise<ImageFileDirectory>> = new Map();\n\n return async (sel: OmeTiffSelection, pyramidLevel: number) => {\n const index = ifdIndexer(sel);\n const baseImage = await tiff.getImage(index);\n\n // It's the highest resolution, no need to look up SubIFDs.\n if (pyramidLevel === 0) {\n return baseImage;\n }\n\n const {SubIFDs} = baseImage.fileDirectory;\n if (!SubIFDs) {\n throw Error('Indexing Error: OME-TIFF is missing SubIFDs.');\n }\n\n // Get IFD for the selection at the pyramidal level\n const key = `${sel.t}-${sel.c}-${sel.z}-${pyramidLevel}`;\n if (!ifdCache.has(key)) {\n // Only create a new request if we don't have the key.\n const subIfdOffset = SubIFDs[pyramidLevel - 1];\n ifdCache.set(key, tiff.parseFileDirectoryAt(subIfdOffset));\n }\n const ifd = (await ifdCache.get(key)) as ImageFileDirectory;\n\n // Create a new image object manually from IFD\n // https://github.com/geotiffjs/geotiff.js/blob/8ef472f41b51d18074aece2300b6a8ad91a21ae1/src/geotiff.js#L447-L453\n return new (baseImage.constructor as any)(\n ifd.fileDirectory,\n ifd.geoKeyDirectory,\n tiff.dataView,\n tiff.littleEndian,\n tiff.cache,\n tiff.source\n ) as GeoTIFFImage;\n };\n}\n\n/*\n * Returns a function that computes the image index based on the dimension\n * order and dimension sizes.\n */\nfunction getOmeIFDIndexer(imgMeta: OMEXML[0]): (sel: OmeTiffSelection) => number {\n const {SizeC, SizeZ, SizeT, DimensionOrder} = imgMeta.Pixels;\n switch (DimensionOrder) {\n case 'XYZCT': {\n return ({t, c, z}) => t * SizeZ * SizeC + c * SizeZ + z;\n }\n case 'XYZTC': {\n return ({t, c, z}) => c * SizeZ * SizeT + t * SizeZ + z;\n }\n case 'XYCTZ': {\n return ({t, c, z}) => z * SizeC * SizeT + t * SizeC + c;\n }\n case 'XYCZT': {\n return ({t, c, z}) => t * SizeC * SizeZ + z * SizeC + c;\n }\n case 'XYTCZ': {\n return ({t, c, z}) => z * SizeT * SizeC + c * SizeT + t;\n }\n case 'XYTZC': {\n return ({t, c, z}) => c * SizeT * SizeZ + z * SizeT + t;\n }\n default: {\n throw new Error(`Invalid OME-XML DimensionOrder, got ${DimensionOrder}.`);\n }\n }\n}\n"],"file":"ome-indexers.js"}
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@@ -32,7 +32,7 @@ export function getOmePixelSourceMeta({
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if (!(Pixels.Type in DTYPE_LOOKUP)) {
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throw Error(
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throw Error("Pixel type ".concat(Pixels.Type, " not supported."));
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}
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const dtype = DTYPE_LOOKUP[Pixels.Type];
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{"version":3,"sources":["../../../../src/lib/ome/ome-utils.ts"],"names":["getDims","getLabels","DTYPE_LOOKUP","uint8","uint16","uint32","float","double","int8","int16","int32","getOmePixelSourceMeta","Pixels","labels","DimensionOrder","dims","shape","Array","length","fill","SizeT","SizeC","SizeZ","Interleaved","push","getShape","level","s","SizeX","SizeY","Type","Error","dtype","PhysicalSizeX","PhysicalSizeY","physicalSizes","x","size","unit","PhysicalSizeXUnit","y","PhysicalSizeYUnit","PhysicalSizeZ","z","PhysicalSizeZUnit"],"mappings":"AAAA,SAAQA,OAAR,EAAiBC,SAAjB,QAAiC,SAAjC;AAGA,OAAO,MAAMC,YAAY,GAAG;AAC1BC,EAAAA,KAAK,EAAE,OADmB;AAE1BC,EAAAA,MAAM,EAAE,QAFkB;AAG1BC,EAAAA,MAAM,EAAE,QAHkB;AAI1BC,EAAAA,KAAK,EAAE,SAJmB;AAK1BC,EAAAA,MAAM,EAAE,SALkB;AAM1BC,EAAAA,IAAI,EAAE,MANoB;AAO1BC,EAAAA,KAAK,EAAE,OAPmB;AAQ1BC,EAAAA,KAAK,EAAE;AARmB,CAArB;AAWP,OAAO,SAASC,qBAAT,CAA+B;AAACC,EAAAA;AAAD,CAA/B,EAAoD;AAEzD,QAAMC,MAAM,GAAGZ,SAAS,CAACW,MAAM,CAACE,cAAR,CAAxB;AAGA,QAAMC,IAAI,GAAGf,OAAO,CAACa,MAAD,CAApB;AACA,QAAMG,KAAe,GAAGC,KAAK,CAACJ,MAAM,CAACK,MAAR,CAAL,CAAqBC,IAArB,CAA0B,CAA1B,CAAxB;AACAH,EAAAA,KAAK,CAACD,IAAI,CAAC,GAAD,CAAL,CAAL,GAAmBH,MAAM,CAACQ,KAA1B;AACAJ,EAAAA,KAAK,CAACD,IAAI,CAAC,GAAD,CAAL,CAAL,GAAmBH,MAAM,CAACS,KAA1B;AACAL,EAAAA,KAAK,CAACD,IAAI,CAAC,GAAD,CAAL,CAAL,GAAmBH,MAAM,CAACU,KAA1B;;AAGA,MAAIV,MAAM,CAACW,WAAX,EAAwB;AAEtBV,IAAAA,MAAM,CAACW,IAAP,CAAY,IAAZ;AACAR,IAAAA,KAAK,CAACQ,IAAN,CAAW,CAAX;AACD;;AAID,QAAMC,QAAQ,GAAIC,KAAD,IAAmB;AAClC,UAAMC,CAAC,GAAG,CAAC,GAAGX,KAAJ,CAAV;AACAW,IAAAA,CAAC,CAACZ,IAAI,CAAC,GAAD,CAAL,CAAD,GAAeH,MAAM,CAACgB,KAAP,IAAgBF,KAA/B;AACAC,IAAAA,CAAC,CAACZ,IAAI,CAAC,GAAD,CAAL,CAAD,GAAeH,MAAM,CAACiB,KAAP,IAAgBH,KAA/B;AACA,WAAOC,CAAP;AACD,GALD;;AAOA,MAAI,EAAEf,MAAM,CAACkB,IAAP,IAAe5B,YAAjB,CAAJ,EAAoC;AAClC,UAAM6B,KAAK,
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{"version":3,"sources":["../../../../src/lib/ome/ome-utils.ts"],"names":["getDims","getLabels","DTYPE_LOOKUP","uint8","uint16","uint32","float","double","int8","int16","int32","getOmePixelSourceMeta","Pixels","labels","DimensionOrder","dims","shape","Array","length","fill","SizeT","SizeC","SizeZ","Interleaved","push","getShape","level","s","SizeX","SizeY","Type","Error","dtype","PhysicalSizeX","PhysicalSizeY","physicalSizes","x","size","unit","PhysicalSizeXUnit","y","PhysicalSizeYUnit","PhysicalSizeZ","z","PhysicalSizeZUnit"],"mappings":"AAAA,SAAQA,OAAR,EAAiBC,SAAjB,QAAiC,SAAjC;AAGA,OAAO,MAAMC,YAAY,GAAG;AAC1BC,EAAAA,KAAK,EAAE,OADmB;AAE1BC,EAAAA,MAAM,EAAE,QAFkB;AAG1BC,EAAAA,MAAM,EAAE,QAHkB;AAI1BC,EAAAA,KAAK,EAAE,SAJmB;AAK1BC,EAAAA,MAAM,EAAE,SALkB;AAM1BC,EAAAA,IAAI,EAAE,MANoB;AAO1BC,EAAAA,KAAK,EAAE,OAPmB;AAQ1BC,EAAAA,KAAK,EAAE;AARmB,CAArB;AAWP,OAAO,SAASC,qBAAT,CAA+B;AAACC,EAAAA;AAAD,CAA/B,EAAoD;AAEzD,QAAMC,MAAM,GAAGZ,SAAS,CAACW,MAAM,CAACE,cAAR,CAAxB;AAGA,QAAMC,IAAI,GAAGf,OAAO,CAACa,MAAD,CAApB;AACA,QAAMG,KAAe,GAAGC,KAAK,CAACJ,MAAM,CAACK,MAAR,CAAL,CAAqBC,IAArB,CAA0B,CAA1B,CAAxB;AACAH,EAAAA,KAAK,CAACD,IAAI,CAAC,GAAD,CAAL,CAAL,GAAmBH,MAAM,CAACQ,KAA1B;AACAJ,EAAAA,KAAK,CAACD,IAAI,CAAC,GAAD,CAAL,CAAL,GAAmBH,MAAM,CAACS,KAA1B;AACAL,EAAAA,KAAK,CAACD,IAAI,CAAC,GAAD,CAAL,CAAL,GAAmBH,MAAM,CAACU,KAA1B;;AAGA,MAAIV,MAAM,CAACW,WAAX,EAAwB;AAEtBV,IAAAA,MAAM,CAACW,IAAP,CAAY,IAAZ;AACAR,IAAAA,KAAK,CAACQ,IAAN,CAAW,CAAX;AACD;;AAID,QAAMC,QAAQ,GAAIC,KAAD,IAAmB;AAClC,UAAMC,CAAC,GAAG,CAAC,GAAGX,KAAJ,CAAV;AACAW,IAAAA,CAAC,CAACZ,IAAI,CAAC,GAAD,CAAL,CAAD,GAAeH,MAAM,CAACgB,KAAP,IAAgBF,KAA/B;AACAC,IAAAA,CAAC,CAACZ,IAAI,CAAC,GAAD,CAAL,CAAD,GAAeH,MAAM,CAACiB,KAAP,IAAgBH,KAA/B;AACA,WAAOC,CAAP;AACD,GALD;;AAOA,MAAI,EAAEf,MAAM,CAACkB,IAAP,IAAe5B,YAAjB,CAAJ,EAAoC;AAClC,UAAM6B,KAAK,sBAAenB,MAAM,CAACkB,IAAtB,qBAAX;AACD;;AAED,QAAME,KAAK,GAAG9B,YAAY,CAACU,MAAM,CAACkB,IAAR,CAA1B;;AACA,MAAIlB,MAAM,CAACqB,aAAP,IAAwBrB,MAAM,CAACsB,aAAnC,EAAkD;AAChD,UAAMC,aAEL,GAAG;AACFC,MAAAA,CAAC,EAAE;AACDC,QAAAA,IAAI,EAAEzB,MAAM,CAACqB,aADZ;AAEDK,QAAAA,IAAI,EAAE1B,MAAM,CAAC2B;AAFZ,OADD;AAKFC,MAAAA,CAAC,EAAE;AACDH,QAAAA,IAAI,EAAEzB,MAAM,CAACsB,aADZ;AAEDI,QAAAA,IAAI,EAAE1B,MAAM,CAAC6B;AAFZ;AALD,KAFJ;;AAYA,QAAI7B,MAAM,CAAC8B,aAAX,EAA0B;AACxBP,MAAAA,aAAa,CAACQ,CAAd,GAAkB;AAChBN,QAAAA,IAAI,EAAEzB,MAAM,CAAC8B,aADG;AAEhBJ,QAAAA,IAAI,EAAE1B,MAAM,CAACgC;AAFG,OAAlB;AAID;;AACD,WAAO;AAAC/B,MAAAA,MAAD;AAASY,MAAAA,QAAT;AAAmBU,MAAAA,aAAnB;AAAkCH,MAAAA;AAAlC,KAAP;AACD;;AAED,SAAO;AAACnB,IAAAA,MAAD;AAASY,IAAAA,QAAT;AAAmBO,IAAAA;AAAnB,GAAP;AACD","sourcesContent":["import {getDims, getLabels} from './utils';\nimport type {OMEXML, UnitsLength} from './omexml';\n\nexport const DTYPE_LOOKUP = {\n uint8: 'Uint8',\n uint16: 'Uint16',\n uint32: 'Uint32',\n float: 'Float32',\n double: 'Float64',\n int8: 'Int8',\n int16: 'Int16',\n int32: 'Int32'\n} as const;\n\nexport function getOmePixelSourceMeta({Pixels}: OMEXML[0]) {\n // e.g. 'XYZCT' -> ['t', 'c', 'z', 'y', 'x']\n const labels = getLabels(Pixels.DimensionOrder);\n\n // Compute \"shape\" of image\n const dims = getDims(labels);\n const shape: number[] = Array(labels.length).fill(0);\n shape[dims('t')] = Pixels.SizeT;\n shape[dims('c')] = Pixels.SizeC;\n shape[dims('z')] = Pixels.SizeZ;\n\n // Push extra dimension if data are interleaved.\n if (Pixels.Interleaved) {\n // @ts-ignore\n labels.push('_c');\n shape.push(3);\n }\n\n // Creates a new shape for different level of pyramid.\n // Assumes factor-of-two downsampling.\n const getShape = (level: number) => {\n const s = [...shape];\n s[dims('x')] = Pixels.SizeX >> level;\n s[dims('y')] = Pixels.SizeY >> level;\n return s;\n };\n\n if (!(Pixels.Type in DTYPE_LOOKUP)) {\n throw Error(`Pixel type ${Pixels.Type} not supported.`);\n }\n\n const dtype = DTYPE_LOOKUP[Pixels.Type as keyof typeof DTYPE_LOOKUP];\n if (Pixels.PhysicalSizeX && Pixels.PhysicalSizeY) {\n const physicalSizes: {\n [k: string]: {size: number; unit: UnitsLength};\n } = {\n x: {\n size: Pixels.PhysicalSizeX,\n unit: Pixels.PhysicalSizeXUnit\n },\n y: {\n size: Pixels.PhysicalSizeY,\n unit: Pixels.PhysicalSizeYUnit\n }\n };\n if (Pixels.PhysicalSizeZ) {\n physicalSizes.z = {\n size: Pixels.PhysicalSizeZ,\n unit: Pixels.PhysicalSizeZUnit\n };\n }\n return {labels, getShape, physicalSizes, dtype};\n }\n\n return {labels, getShape, dtype};\n}\n"],"file":"ome-utils.js"}
|
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@@ -46,16 +46,16 @@ export function fromString(str) {
|
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|
46
46
|
Pixels
|
|
47
47
|
} = image;
|
|
48
48
|
const sizes = ['X', 'Y', 'Z'].map(name => {
|
|
49
|
-
const size = Pixels[
|
|
50
|
-
const unit = Pixels[
|
|
51
|
-
return size && unit ?
|
|
49
|
+
const size = Pixels["PhysicalSize".concat(name)];
|
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50
|
+
const unit = Pixels["PhysicalSize".concat(name, "Unit")];
|
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51
|
+
return size && unit ? "".concat(size, " ").concat(unit) : '-';
|
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52
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}).join(' x ');
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return {
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54
|
'Acquisition Date': image.AquisitionDate,
|
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55
|
-
'Dimensions (XY)':
|
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55
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+
'Dimensions (XY)': "".concat(Pixels.SizeX, " x ").concat(Pixels.SizeY),
|
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'Pixels Type': Pixels.Type,
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'Pixels Size (XYZ)': sizes,
|
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-
'Z-sections/Timepoints':
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58
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+
'Z-sections/Timepoints': "".concat(Pixels.SizeZ, " x ").concat(Pixels.SizeT),
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Channels: Pixels.SizeC
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};
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}
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@@ -1 +1 @@
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-
{"version":3,"sources":["../../../../src/lib/ome/omexml.ts"],"names":["parser","ensureArray","intToRgba","PARSER_OPTIONS","attributeNamePrefix","attrNodeName","parseNodeValue","parseAttributeValue","ignoreAttributes","parse","str","fromString","res","OME","Error","Image","map","img","Channels","Pixels","Channel","c","attr","Color","AquisitionDate","Description","image","format","sizes","name","size","unit","join","SizeX","SizeY","Type","SizeZ","SizeT","SizeC"],"mappings":"AAAA,OAAOA,MAAP,MAAmB,iBAAnB;AACA,SAAQC,WAAR,EAAqBC,SAArB,QAAqC,qBAArC;AAGA,MAAMC,cAAc,GAAG;AAErBC,EAAAA,mBAAmB,EAAE,EAFA;AAGrBC,EAAAA,YAAY,EAAE,MAHO;AAMrBC,EAAAA,cAAc,EAAE,IANK;AAOrBC,EAAAA,mBAAmB,EAAE,IAPA;AAUrBC,EAAAA,gBAAgB,EAAE;AAVG,CAAvB;;AAaA,MAAMC,KAAK,GAAIC,GAAD,IAAuBV,MAAM,CAACS,KAAP,CAAaC,GAAb,EAAkBP,cAAlB,CAArC;;AAEA,OAAO,SAASQ,UAAT,CAAoBD,GAApB,EAAiC;AACtC,QAAME,GAAG,GAAGH,KAAK,CAACC,GAAD,CAAjB;;AACA,MAAI,CAACE,GAAG,CAACC,GAAT,EAAc;AACZ,UAAMC,KAAK,CAAC,mCAAD,CAAX;AACD;;AACD,SAAOb,WAAW,CAACW,GAAG,CAACC,GAAJ,CAAQE,KAAT,CAAX,CAA2BC,GAA3B,CAAgCC,GAAD,IAAS;AAC7C,UAAMC,QAAQ,GAAGjB,WAAW,CAACgB,GAAG,CAACE,MAAJ,CAAWC,OAAZ,CAAX,CAAgCJ,GAAhC,CAAqCK,CAAD,IAAO;AAC1D,UAAI,WAAWA,CAAC,CAACC,IAAjB,EAAuB;AACrB,eAAO,EAAC,GAAGD,CAAC,CAACC,IAAN;AAAYC,UAAAA,KAAK,EAAErB,SAAS,CAACmB,CAAC,CAACC,IAAF,CAAOC,KAAR;AAA5B,SAAP;AACD;;AACD,aAAO,EAAC,GAAGF,CAAC,CAACC;AAAN,OAAP;AACD,KALgB,CAAjB;AAMA,UAAM;AAACE,MAAAA,cAAc,GAAG,EAAlB;AAAsBC,MAAAA,WAAW,GAAG;AAApC,QAA0CR,GAAhD;AACA,UAAMS,KAAK,GAAG,EACZ,GAAGT,GAAG,CAACK,IADK;AAEZE,MAAAA,cAFY;AAGZC,MAAAA,WAHY;AAIZN,MAAAA,MAAM,EAAE,EACN,GAAGF,GAAG,CAACE,MAAJ,CAAWG,IADR;AAENJ,QAAAA;AAFM;AAJI,KAAd;AASA,WAAO,EACL,GAAGQ,KADE;;AAELC,MAAAA,MAAM,GAAG;AACP,cAAM;AAACR,UAAAA;AAAD,YAAWO,KAAjB;AAEA,cAAME,KAAK,GAAI,CAAC,GAAD,EAAM,GAAN,EAAW,GAAX,CAAD,CACXZ,GADW,CACNa,IAAD,IAAU;AACb,gBAAMC,IAAI,GAAGX,MAAM,
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1
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+
{"version":3,"sources":["../../../../src/lib/ome/omexml.ts"],"names":["parser","ensureArray","intToRgba","PARSER_OPTIONS","attributeNamePrefix","attrNodeName","parseNodeValue","parseAttributeValue","ignoreAttributes","parse","str","fromString","res","OME","Error","Image","map","img","Channels","Pixels","Channel","c","attr","Color","AquisitionDate","Description","image","format","sizes","name","size","unit","join","SizeX","SizeY","Type","SizeZ","SizeT","SizeC"],"mappings":"AAAA,OAAOA,MAAP,MAAmB,iBAAnB;AACA,SAAQC,WAAR,EAAqBC,SAArB,QAAqC,qBAArC;AAGA,MAAMC,cAAc,GAAG;AAErBC,EAAAA,mBAAmB,EAAE,EAFA;AAGrBC,EAAAA,YAAY,EAAE,MAHO;AAMrBC,EAAAA,cAAc,EAAE,IANK;AAOrBC,EAAAA,mBAAmB,EAAE,IAPA;AAUrBC,EAAAA,gBAAgB,EAAE;AAVG,CAAvB;;AAaA,MAAMC,KAAK,GAAIC,GAAD,IAAuBV,MAAM,CAACS,KAAP,CAAaC,GAAb,EAAkBP,cAAlB,CAArC;;AAEA,OAAO,SAASQ,UAAT,CAAoBD,GAApB,EAAiC;AACtC,QAAME,GAAG,GAAGH,KAAK,CAACC,GAAD,CAAjB;;AACA,MAAI,CAACE,GAAG,CAACC,GAAT,EAAc;AACZ,UAAMC,KAAK,CAAC,mCAAD,CAAX;AACD;;AACD,SAAOb,WAAW,CAACW,GAAG,CAACC,GAAJ,CAAQE,KAAT,CAAX,CAA2BC,GAA3B,CAAgCC,GAAD,IAAS;AAC7C,UAAMC,QAAQ,GAAGjB,WAAW,CAACgB,GAAG,CAACE,MAAJ,CAAWC,OAAZ,CAAX,CAAgCJ,GAAhC,CAAqCK,CAAD,IAAO;AAC1D,UAAI,WAAWA,CAAC,CAACC,IAAjB,EAAuB;AACrB,eAAO,EAAC,GAAGD,CAAC,CAACC,IAAN;AAAYC,UAAAA,KAAK,EAAErB,SAAS,CAACmB,CAAC,CAACC,IAAF,CAAOC,KAAR;AAA5B,SAAP;AACD;;AACD,aAAO,EAAC,GAAGF,CAAC,CAACC;AAAN,OAAP;AACD,KALgB,CAAjB;AAMA,UAAM;AAACE,MAAAA,cAAc,GAAG,EAAlB;AAAsBC,MAAAA,WAAW,GAAG;AAApC,QAA0CR,GAAhD;AACA,UAAMS,KAAK,GAAG,EACZ,GAAGT,GAAG,CAACK,IADK;AAEZE,MAAAA,cAFY;AAGZC,MAAAA,WAHY;AAIZN,MAAAA,MAAM,EAAE,EACN,GAAGF,GAAG,CAACE,MAAJ,CAAWG,IADR;AAENJ,QAAAA;AAFM;AAJI,KAAd;AASA,WAAO,EACL,GAAGQ,KADE;;AAELC,MAAAA,MAAM,GAAG;AACP,cAAM;AAACR,UAAAA;AAAD,YAAWO,KAAjB;AAEA,cAAME,KAAK,GAAI,CAAC,GAAD,EAAM,GAAN,EAAW,GAAX,CAAD,CACXZ,GADW,CACNa,IAAD,IAAU;AACb,gBAAMC,IAAI,GAAGX,MAAM,uBAAgBU,IAAhB,EAAnB;AACA,gBAAME,IAAI,GAAGZ,MAAM,uBAAgBU,IAAhB,UAAnB;AACA,iBAAOC,IAAI,IAAIC,IAAR,aAAkBD,IAAlB,cAA0BC,IAA1B,IAAmC,GAA1C;AACD,SALW,EAMXC,IANW,CAMN,KANM,CAAd;AAQA,eAAO;AACL,8BAAoBN,KAAK,CAACF,cADrB;AAEL,uCAAsBL,MAAM,CAACc,KAA7B,gBAAwCd,MAAM,CAACe,KAA/C,CAFK;AAGL,yBAAef,MAAM,CAACgB,IAHjB;AAIL,+BAAqBP,KAJhB;AAKL,6CAA4BT,MAAM,CAACiB,KAAnC,gBAA8CjB,MAAM,CAACkB,KAArD,CALK;AAMLnB,UAAAA,QAAQ,EAAEC,MAAM,CAACmB;AANZ,SAAP;AAQD;;AArBI,KAAP;AAuBD,GAxCM,CAAP;AAyCD","sourcesContent":["import parser from 'fast-xml-parser';\nimport {ensureArray, intToRgba} from '../utils/tiff-utils';\n\n// WARNING: Changes to the parser options _will_ effect the types in types/omexml.d.ts.\nconst PARSER_OPTIONS = {\n // Nests attributes withtout prefix under 'attr' key for each node\n attributeNamePrefix: '',\n attrNodeName: 'attr',\n\n // Parses numbers for both attributes and nodes\n parseNodeValue: true,\n parseAttributeValue: true,\n\n // Forces attributes to be parsed\n ignoreAttributes: false\n};\n\nconst parse = (str: string): Root => parser.parse(str, PARSER_OPTIONS);\n\nexport function fromString(str: string) {\n const res = parse(str);\n if (!res.OME) {\n throw Error('Failed to parse OME-XML metadata.');\n }\n return ensureArray(res.OME.Image).map((img) => {\n const Channels = ensureArray(img.Pixels.Channel).map((c) => {\n if ('Color' in c.attr) {\n return {...c.attr, Color: intToRgba(c.attr.Color)};\n }\n return {...c.attr};\n });\n const {AquisitionDate = '', Description = ''} = img;\n const image = {\n ...img.attr,\n AquisitionDate,\n Description,\n Pixels: {\n ...img.Pixels.attr,\n Channels\n }\n };\n return {\n ...image,\n format() {\n const {Pixels} = image;\n\n const sizes = (['X', 'Y', 'Z'] as const)\n .map((name) => {\n const size = Pixels[`PhysicalSize${name}` as const];\n const unit = Pixels[`PhysicalSize${name}Unit` as const];\n return size && unit ? `${size} ${unit}` : '-';\n })\n .join(' x ');\n\n return {\n 'Acquisition Date': image.AquisitionDate,\n 'Dimensions (XY)': `${Pixels.SizeX} x ${Pixels.SizeY}`,\n 'Pixels Type': Pixels.Type,\n 'Pixels Size (XYZ)': sizes,\n 'Z-sections/Timepoints': `${Pixels.SizeZ} x ${Pixels.SizeT}`,\n Channels: Pixels.SizeC\n };\n }\n };\n });\n}\n\nexport type OMEXML = ReturnType<typeof fromString>;\nexport type DimensionOrder = 'XYZCT' | 'XYZTC' | 'XYCTZ' | 'XYCZT' | 'XYTCZ' | 'XYTZC';\n\n// Structure of node is determined by the PARSER_OPTIONS.\ntype Node<T, A> = T & {attr: A};\ntype Attrs<Fields extends string, T = string> = {[K in Fields]: T};\n\ntype OMEAttrs = Attrs<'xmlns' | 'xmlns:xsi' | 'xsi:schemaLocation'>;\ntype OME = Node<{Insturment: Insturment; Image: Image | Image[]}, OMEAttrs>;\n\ntype Insturment = Node<\n {Objective: Node<{}, Attrs<'ID' | 'Model' | 'NominalMagnification'>>},\n Attrs<'ID'>\n>;\n\ninterface ImageNodes {\n AquisitionDate?: string;\n Description?: string;\n Pixels: Pixels;\n InstrumentRef: Node<{}, {ID: string}>;\n ObjectiveSettings: Node<{}, {ID: string}>;\n}\ntype Image = Node<ImageNodes, Attrs<'ID' | 'Name'>>;\n\ntype PixelType =\n | 'int8'\n | 'int16'\n | 'int32'\n | 'uint8'\n | 'uint16'\n | 'uint32'\n | 'float'\n | 'bit'\n | 'double'\n | 'complex'\n | 'double-complex';\n\nexport type UnitsLength =\n | 'Ym'\n | 'Zm'\n | 'Em'\n | 'Pm'\n | 'Tm'\n | 'Gm'\n | 'Mm'\n | 'km'\n | 'hm'\n | 'dam'\n | 'm'\n | 'dm'\n | 'cm'\n | 'mm'\n | 'µm'\n | 'nm'\n | 'pm'\n | 'fm'\n | 'am'\n | 'zm'\n | 'ym'\n | 'Å'\n | 'thou'\n | 'li'\n | 'in'\n | 'ft'\n | 'yd'\n | 'mi'\n | 'ua'\n | 'ly'\n | 'pc'\n | 'pt'\n | 'pixel'\n | 'reference frame';\n\ntype PhysicalSize<Name extends string> = `PhysicalSize${Name}`;\ntype PhysicalSizeUnit<Name extends string> = `PhysicalSize${Name}Unit`;\ntype Size<Names extends string> = `Size${Names}`;\n\ntype PixelAttrs = Attrs<\n PhysicalSize<'X' | 'Y' | 'Z'> | 'SignificantBits' | Size<'T' | 'C' | 'Z' | 'Y' | 'X'>,\n number\n> &\n Attrs<PhysicalSizeUnit<'X' | 'Y' | 'Z'>, UnitsLength> &\n Attrs<'BigEndian' | 'Interleaved', boolean> & {\n ID: string;\n DimensionOrder: DimensionOrder;\n Type: PixelType;\n };\n\ntype Pixels = Node<\n {\n Channel: Channel | Channel[];\n TiffData: Node<{}, Attrs<'IFD' | 'PlaneCount'>>;\n },\n PixelAttrs\n>;\n\ntype ChannelAttrs =\n | {\n ID: string;\n SamplesPerPixel: number;\n Name?: string;\n }\n | {\n ID: string;\n SamplesPerPixel: number;\n Name?: string;\n Color: number;\n };\n\ntype Channel = Node<{}, ChannelAttrs>;\n\ntype Root = {OME: OME};\n"],"file":"omexml.js"}
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@@ -1,6 +1,6 @@
|
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|
1
1
|
const VIV_PROXY_KEY = '__viv';
|
|
2
|
-
const OFFSETS_PROXY_KEY =
|
|
3
|
-
const POOL_PROXY_KEY =
|
|
2
|
+
const OFFSETS_PROXY_KEY = "".concat(VIV_PROXY_KEY, "-offsets");
|
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3
|
+
const POOL_PROXY_KEY = "".concat(VIV_PROXY_KEY, "-decoder-pool");
|
|
4
4
|
export function checkProxies(tiff) {
|
|
5
5
|
if (!isProxy(tiff, OFFSETS_PROXY_KEY)) {
|
|
6
6
|
console.warn('GeoTIFF source is missing offsets proxy.');
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@@ -1 +1 @@
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1
|
-
{"version":3,"sources":["../../../../src/lib/utils/proxies.ts"],"names":["VIV_PROXY_KEY","OFFSETS_PROXY_KEY","POOL_PROXY_KEY","checkProxies","tiff","isProxy","console","warn","proxyFlag","createOffsetsProxy","offsets","get","target","key","index","ifdRequests","offset","parseFileDirectoryAt","getImage","Reflect","Proxy","createPoolProxy","pool","options","readRasters"],"mappings":"AAGA,MAAMA,aAAa,GAAG,OAAtB;AACA,MAAMC,iBAAiB,
|
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1
|
+
{"version":3,"sources":["../../../../src/lib/utils/proxies.ts"],"names":["VIV_PROXY_KEY","OFFSETS_PROXY_KEY","POOL_PROXY_KEY","checkProxies","tiff","isProxy","console","warn","proxyFlag","createOffsetsProxy","offsets","get","target","key","index","ifdRequests","offset","parseFileDirectoryAt","getImage","Reflect","Proxy","createPoolProxy","pool","options","readRasters"],"mappings":"AAGA,MAAMA,aAAa,GAAG,OAAtB;AACA,MAAMC,iBAAiB,aAAMD,aAAN,aAAvB;AACA,MAAME,cAAc,aAAMF,aAAN,kBAApB;AAMA,OAAO,SAASG,YAAT,CAAsBC,IAAtB,EAAqC;AAC1C,MAAI,CAACC,OAAO,CAACD,IAAD,EAAOH,iBAAP,CAAZ,EAAuC;AACrCK,IAAAA,OAAO,CAACC,IAAR,CAAa,0CAAb;AACD;;AAED,MAAI,CAACF,OAAO,CAACD,IAAD,EAAOF,cAAP,CAAZ,EAAoC;AAClCI,IAAAA,OAAO,CAACC,IAAR,CAAa,+CAAb;AACD;AACF;;AAOD,SAASF,OAAT,CAAiBD,IAAjB,EAAgCI,SAAhC,EAAmD;AACjD,SAAQJ,IAAD,CAAcI,SAAd,CAAP;AACD;;AAYD,OAAO,SAASC,kBAAT,CAA4BL,IAA5B,EAA2CM,OAA3C,EAA8D;AACnE,QAAMC,GAAG,GAAG,CAACC,MAAD,EAAkBC,GAAlB,KAA+B;AAEzC,QAAIA,GAAG,KAAK,UAAZ,EAAwB;AACtB,aAAQC,KAAD,IAAmB;AAExB,YAAI,EAAEA,KAAK,IAAIF,MAAM,CAACG,WAAlB,KAAkCD,KAAK,IAAIJ,OAA/C,EAAwD;AACtD,gBAAMM,MAAM,GAAGN,OAAO,CAACI,KAAD,CAAtB;AACAF,UAAAA,MAAM,CAACG,WAAP,CAAmBD,KAAnB,IAA4BF,MAAM,CAACK,oBAAP,CAA4BD,MAA5B,CAA5B;AACD;;AACD,eAAOJ,MAAM,CAACM,QAAP,CAAgBJ,KAAhB,CAAP;AACD,OAPD;AAQD;;AAGD,QAAID,GAAG,KAAKZ,iBAAZ,EAA+B;AAC7B,aAAO,IAAP;AACD;;AAED,WAAOkB,OAAO,CAACR,GAAR,CAAYC,MAAZ,EAAoBC,GAApB,CAAP;AACD,GAnBD;;AAoBA,SAAO,IAAIO,KAAJ,CAAUhB,IAAV,EAAgB;AAACO,IAAAA;AAAD,GAAhB,CAAP;AACD;AAUD,OAAO,SAASU,eAAT,CAAyBjB,IAAzB,EAAwCkB,IAAxC,EAAoD;AACzD,QAAMX,GAAG,GAAG,CAACC,MAAD,EAAkBC,GAAlB,KAA+B;AAEzC,QAAIA,GAAG,KAAK,aAAZ,EAA2B;AACzB,aAAQU,OAAD,IAAoD;AAGzD,eAAOX,MAAM,CAACY,WAAP,CAAmB,EAAC,GAAGD,OAAJ;AAAaD,UAAAA;AAAb,SAAnB,CAAP;AACD,OAJD;AAKD;;AAGD,QAAIT,GAAG,KAAKX,cAAZ,EAA4B;AAC1B,aAAO,IAAP;AACD;;AAED,WAAOiB,OAAO,CAACR,GAAR,CAAYC,MAAZ,EAAoBC,GAApB,CAAP;AACD,GAhBD;;AAiBA,SAAO,IAAIO,KAAJ,CAAUhB,IAAV,EAAgB;AAACO,IAAAA;AAAD,GAAhB,CAAP;AACD","sourcesContent":["import type {GeoTIFF} from 'geotiff';\nimport type Pool from './Pool';\n\nconst VIV_PROXY_KEY = '__viv';\nconst OFFSETS_PROXY_KEY = `${VIV_PROXY_KEY}-offsets` as const;\nconst POOL_PROXY_KEY = `${VIV_PROXY_KEY}-decoder-pool` as const;\n\n/*\n * Inspect if the GeoTIFF source is wrapped in our proxies,\n * and warn if missing.\n */\nexport function checkProxies(tiff: GeoTIFF) {\n if (!isProxy(tiff, OFFSETS_PROXY_KEY)) {\n console.warn('GeoTIFF source is missing offsets proxy.'); // eslint-disable-line no-console\n }\n\n if (!isProxy(tiff, POOL_PROXY_KEY)) {\n console.warn('GeoTIFF source is missing decoder-pool proxy.'); // eslint-disable-line no-console\n }\n}\n\n/*\n * > isProxy(tiff, POOL_PROXY_KEY) === true; // false\n * > tiff = createPoolProxy(tiff, new Pool());\n * > isProxy(tiff, POOL_PROXY_KEY) === true; // true\n */\nfunction isProxy(tiff: GeoTIFF, proxyFlag: string) {\n return (tiff as any)[proxyFlag] as boolean;\n}\n\n/*\n * Creates an ES6 Proxy that wraps a GeoTIFF object. The proxy\n * handler intercepts calls to `tiff.getImage` and uses our custom\n * pre-computed offsets to pre-fetch the correct file directory.\n *\n * This is a bit of a hack. Internally GeoTIFF inspects `this.ifdRequests`\n * to see which fileDirectories need to be traversed. By adding the\n * ifdRequest for an 'index' manually, GeoTIFF will await that request\n * rather than traversing the file system remotely.\n */\nexport function createOffsetsProxy(tiff: GeoTIFF, offsets: number[]) {\n const get = (target: GeoTIFF, key: any) => {\n // Intercept `tiff.getImage`\n if (key === 'getImage') {\n return (index: number) => {\n // Manually add ifdRequest to tiff if missing and we have an offset.\n if (!(index in target.ifdRequests) && index in offsets) {\n const offset = offsets[index];\n target.ifdRequests[index] = target.parseFileDirectoryAt(offset);\n }\n return target.getImage(index);\n };\n }\n\n // tiff['__viv-offsets'] === true\n if (key === OFFSETS_PROXY_KEY) {\n return true;\n }\n\n return Reflect.get(target, key);\n };\n return new Proxy(tiff, {get});\n}\n\n/*\n * Creates an ES6 Proxy that wraps a GeoTIFF object. The proxy\n * handler intercepts calls to `tiff.readRasters` and injects\n * a pool argument to every call. This means our TiffPixelSource\n * doesn't need to be aware of whether a decoder pool is in use.\n *\n * > tiff.readRasters({ window }) -> tiff.readRasters({ window, pool });\n */\nexport function createPoolProxy(tiff: GeoTIFF, pool: Pool) {\n const get = (target: GeoTIFF, key: any) => {\n // Intercept calls to `image.readRasters`\n if (key === 'readRasters') {\n return (options: Parameters<typeof target.readRasters>) => {\n // Inject `pool` argument with other raster options.\n // @ts-ignore\n return target.readRasters({...options, pool});\n };\n }\n\n // tiff['__viv-decoder-pool'] === true\n if (key === POOL_PROXY_KEY) {\n return true;\n }\n\n return Reflect.get(target, key);\n };\n return new Proxy(tiff, {get});\n}\n"],"file":"proxies.js"}
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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1
1
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{
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2
2
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"name": "@loaders.gl/geotiff",
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3
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-
"version": "3.0.
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3
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+
"version": "3.0.14",
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4
4
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"description": "Framework-independent loaders for tiff and geotiff",
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5
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"license": "MIT",
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6
6
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"publishConfig": {
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@@ -39,5 +39,5 @@
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"fast-xml-parser": "^3.16.0",
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40
40
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"geotiff": "^1.0.4"
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41
41
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},
|
|
42
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-
"gitHead": "
|
|
42
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+
"gitHead": "dc931768fc34de549ef6baeb94e2ee5aa8163baf"
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43
43
|
}
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