@lincoln504/pi-research 0.1.13 → 1.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (248) hide show
  1. package/LICENSE +1 -1
  2. package/README.md +55 -138
  3. package/dist/cli.mjs +23375 -0
  4. package/dist/prompts/research-knowledge-relevance-triage.md +35 -0
  5. package/dist/prompts/research-knowledge-search-extractor.md +41 -0
  6. package/dist/prompts/research-tool-usage.md +92 -0
  7. package/dist/prompts/researcher.md +89 -0
  8. package/dist/prompts/system-coordinator.md +75 -0
  9. package/dist/prompts/system-lead-evaluator.md +118 -0
  10. package/dist/thread-worker.mjs +2611 -0
  11. package/dist/webgpu-probe.mjs +80 -0
  12. package/docs/AGENT-SKILL.md +130 -0
  13. package/docs/ARCHITECTURE.md +306 -80
  14. package/docs/CONFIGURATION.md +249 -0
  15. package/docs/KNOWLEDGE-STORE.md +211 -0
  16. package/docs/PI-EXTENSION.md +91 -0
  17. package/docs/SDK.md +122 -0
  18. package/docs/THIRD-PARTY-NOTICES.md +66 -0
  19. package/package.json +102 -36
  20. package/scripts/build.cjs +140 -0
  21. package/scripts/cleanup.cjs +149 -0
  22. package/scripts/prepare.cjs +28 -0
  23. package/scripts/setup.cjs +134 -0
  24. package/skills/pi-research/README.md +90 -0
  25. package/skills/pi-research/SKILL.md +102 -0
  26. package/skills/pi-research/references/configuration.md +77 -0
  27. package/skills/pi-research/scripts/run.mjs +237 -0
  28. package/src/cleanup/research-cleanup.ts +140 -0
  29. package/src/cli.ts +1195 -0
  30. package/src/config.ts +1032 -155
  31. package/src/constants.ts +115 -84
  32. package/src/core/health-check-service.ts +265 -0
  33. package/src/core/interfaces/health-check-interfaces.ts +50 -0
  34. package/src/core/interfaces/knowledge-interfaces.ts +190 -0
  35. package/src/core/interfaces/observer-interfaces.ts +67 -0
  36. package/src/core/interfaces/orchestration-interfaces.ts +86 -0
  37. package/src/core/interfaces/planning-interfaces.ts +100 -0
  38. package/src/core/interfaces/process-interfaces.ts +37 -0
  39. package/src/core/interfaces/research-plan-types.ts +52 -0
  40. package/src/core/interfaces/scheduler-interfaces.ts +91 -0
  41. package/src/core/interfaces/service-names.ts +39 -0
  42. package/src/core/interfaces/state-manager-interfaces.ts +29 -0
  43. package/src/core/interfaces/steering-interfaces.ts +31 -0
  44. package/src/core/llm/agentic-repair.ts +169 -0
  45. package/src/core/llm/inject-date.ts +52 -0
  46. package/src/core/llm/llm-timeout.ts +64 -0
  47. package/src/core/llm/llm-utils.ts +86 -0
  48. package/src/core/llm/model-registry-factory.ts +287 -0
  49. package/src/core/llm/pi-ai-completion.ts +29 -0
  50. package/src/core/llm/prompts.ts +50 -0
  51. package/src/core/llm/research-model-resolver.ts +91 -0
  52. package/src/core/planning-constants.ts +13 -0
  53. package/src/core/planning-service.ts +649 -0
  54. package/src/core/planning-utils.ts +299 -0
  55. package/src/core/scheduler-factory.ts +48 -0
  56. package/src/core/scheduler-service.ts +123 -0
  57. package/src/core/service-initialization.ts +194 -0
  58. package/src/core/service-interfaces.ts +48 -0
  59. package/src/core/service-registry.ts +659 -0
  60. package/src/healthcheck/index.ts +271 -265
  61. package/src/healthcheck/registry.ts +130 -0
  62. package/src/index.ts +639 -50
  63. package/src/infrastructure/browser/browser-cleanup.ts +309 -0
  64. package/src/infrastructure/browser/browser-client.ts +199 -0
  65. package/src/infrastructure/browser/browser-error-utils.ts +160 -0
  66. package/src/infrastructure/browser/browser-lifecycle.ts +120 -0
  67. package/src/infrastructure/browser/browser-server.ts +174 -0
  68. package/src/infrastructure/browser/browser-task-scheduler.ts +461 -0
  69. package/src/infrastructure/browser/cleanup-utils.ts +155 -0
  70. package/src/infrastructure/browser/client-agent.ts +31 -0
  71. package/src/infrastructure/browser/config.ts +288 -0
  72. package/src/infrastructure/browser/ensure-browser.ts +205 -0
  73. package/src/infrastructure/browser/index.ts +37 -0
  74. package/src/infrastructure/browser/priority-task-queue.ts +226 -0
  75. package/src/infrastructure/browser/scheduler-factory.ts +354 -0
  76. package/src/infrastructure/browser/task-execution-service.ts +209 -0
  77. package/src/infrastructure/browser/thread-worker-browser.ts +282 -0
  78. package/src/infrastructure/browser/thread-worker-lifecycle.ts +323 -0
  79. package/src/infrastructure/browser/thread-worker-messaging.ts +662 -0
  80. package/src/infrastructure/browser/thread-worker-types.ts +25 -0
  81. package/src/infrastructure/browser/thread-worker.mjs +2611 -0
  82. package/src/infrastructure/browser/thread-worker.ts +168 -0
  83. package/src/infrastructure/browser/worker-pool-manager.ts +449 -0
  84. package/src/infrastructure/embedding/embedding-client.ts +205 -0
  85. package/src/infrastructure/embedding/embedding-factory.ts +324 -0
  86. package/src/infrastructure/embedding/embedding-server.ts +535 -0
  87. package/src/infrastructure/file-lock-service.ts +592 -0
  88. package/src/infrastructure/gpu-resource-service.ts +191 -0
  89. package/src/infrastructure/knowledge-store-service.ts +475 -0
  90. package/src/infrastructure/metrics-service.ts +129 -0
  91. package/src/infrastructure/process-lifecycle-service.ts +253 -0
  92. package/src/infrastructure/scheduler-factory-service.ts +58 -0
  93. package/src/infrastructure/service-initialization.ts +292 -0
  94. package/src/infrastructure/state/state-backup-manager.ts +290 -0
  95. package/src/infrastructure/state/state-browser-api.ts +62 -0
  96. package/src/infrastructure/state/state-browser-manager.ts +70 -0
  97. package/src/infrastructure/state/state-manager-service.ts +264 -0
  98. package/src/infrastructure/state/state-manager.ts +547 -0
  99. package/src/infrastructure/state/state-metrics.ts +92 -0
  100. package/src/infrastructure/state/state-migration.ts +103 -0
  101. package/src/infrastructure/state/state-path-configuration.ts +119 -0
  102. package/src/infrastructure/state/state-session-api.ts +94 -0
  103. package/src/infrastructure/state/state-session-manager.ts +127 -0
  104. package/src/infrastructure/state/state-validator.ts +93 -0
  105. package/src/infrastructure/types/state-types.ts +85 -0
  106. package/src/knowledge/chunker.ts +157 -0
  107. package/src/knowledge/embedder-init.ts +413 -0
  108. package/src/knowledge/embedder-utils.ts +296 -0
  109. package/src/knowledge/embedder.ts +592 -0
  110. package/src/knowledge/index.ts +126 -0
  111. package/src/knowledge/lancedb-loader.ts +35 -0
  112. package/src/knowledge/migration.ts +17 -0
  113. package/src/knowledge/model-config.ts +132 -0
  114. package/src/knowledge/onnx-env.ts +48 -0
  115. package/src/knowledge/store-operations.ts +291 -0
  116. package/src/knowledge/store-schema.ts +79 -0
  117. package/src/knowledge/store.ts +1251 -0
  118. package/src/knowledge/transformers-loader.ts +31 -0
  119. package/src/knowledge/webgpu-probe.mjs +80 -0
  120. package/src/knowledge/webgpu-viability.ts +255 -0
  121. package/src/knowledge/writer-queue.ts +252 -0
  122. package/src/logger.ts +316 -122
  123. package/src/observers/research-observer-impl.ts +459 -0
  124. package/src/orchestration/deep-research-orchestrator.ts +524 -773
  125. package/src/orchestration/deep-research-types.ts +47 -35
  126. package/src/orchestration/headless-observer.ts +114 -0
  127. package/src/orchestration/orchestration-types.ts +33 -0
  128. package/src/orchestration/quick-research-orchestrator.ts +463 -0
  129. package/src/orchestration/research-orchestration-service.ts +549 -0
  130. package/src/orchestration/research-session-service.ts +178 -0
  131. package/src/orchestration/research-synthesis-service.ts +348 -0
  132. package/src/orchestration/researcher-executor.ts +394 -0
  133. package/src/orchestration/researcher.ts +115 -42
  134. package/src/orchestration/service-initialization.ts +109 -0
  135. package/src/orchestration/session-context.ts +7 -3
  136. package/src/orchestration/session-state.ts +672 -0
  137. package/src/prompts/research-knowledge-relevance-triage.md +35 -0
  138. package/src/prompts/research-knowledge-search-extractor.md +41 -0
  139. package/src/prompts/research-tool-usage.md +63 -16
  140. package/src/prompts/researcher.md +59 -136
  141. package/src/prompts/system-coordinator.md +64 -13
  142. package/src/prompts/system-lead-evaluator.md +82 -189
  143. package/src/research-config.ts +872 -0
  144. package/src/sdk.ts +847 -0
  145. package/src/security/cisa-kev.ts +72 -9
  146. package/src/security/cvss.ts +92 -0
  147. package/src/security/ecosystem.ts +45 -0
  148. package/src/security/github-advisories.ts +168 -428
  149. package/src/security/github-advisory-types.ts +282 -0
  150. package/src/security/index.ts +63 -177
  151. package/src/security/nvd-client.ts +550 -0
  152. package/src/security/nvd-types.ts +179 -0
  153. package/src/security/osv-client.ts +246 -0
  154. package/src/security/osv-types.ts +285 -0
  155. package/src/security/types.ts +67 -53
  156. package/src/skill-install/skill-installer.ts +519 -0
  157. package/src/stackexchange/index.ts +81 -27
  158. package/src/stackexchange/output/compact.ts +7 -6
  159. package/src/stackexchange/output/table.ts +11 -7
  160. package/src/stackexchange/queries.ts +0 -10
  161. package/src/stackexchange/rest-client.ts +141 -66
  162. package/src/stackexchange/types.ts +0 -17
  163. package/src/tool.ts +15 -423
  164. package/src/tools/grep.ts +32 -310
  165. package/src/tools/health-tool-definition.ts +101 -0
  166. package/src/tools/index.ts +38 -9
  167. package/src/tools/research-knowledge-search.ts +974 -0
  168. package/src/tools/research-knowledge-types.ts +77 -0
  169. package/src/tools/research-tool-definition.ts +494 -0
  170. package/src/tools/scrape.ts +286 -388
  171. package/src/tools/search.ts +98 -153
  172. package/src/tools/security.ts +107 -80
  173. package/src/tools/stackexchange.ts +58 -35
  174. package/src/tools/youtube-transcript.ts +163 -0
  175. package/src/tui/knowledge-search-panel.ts +86 -0
  176. package/src/tui/pulse.ts +86 -0
  177. package/src/tui/research-health.ts +124 -0
  178. package/src/tui/research-panel-color-utils.ts +340 -0
  179. package/src/tui/research-panel-format.ts +54 -0
  180. package/src/tui/research-panel-state.ts +404 -0
  181. package/src/tui/research-panel-wave.ts +280 -0
  182. package/src/tui/research-panel.ts +339 -435
  183. package/src/tui/research-tui-manager.ts +233 -0
  184. package/src/tui/tui-controller.ts +137 -0
  185. package/src/types/extension-context.ts +18 -49
  186. package/src/types/index.ts +61 -0
  187. package/src/types/llm.ts +68 -29
  188. package/src/types/research-panel-types.ts +61 -0
  189. package/src/utils/circuit-breaker.ts +146 -0
  190. package/src/utils/citation-utils.ts +97 -0
  191. package/src/utils/disk-space-checker.ts +55 -0
  192. package/src/utils/error-tracker.ts +265 -0
  193. package/src/utils/host-config.ts +45 -0
  194. package/src/utils/input-validation.ts +8 -10
  195. package/src/utils/json-utils.ts +150 -16
  196. package/src/utils/llm-usage.ts +54 -0
  197. package/src/utils/log-rotation.ts +125 -0
  198. package/src/utils/log-utils.ts +159 -0
  199. package/src/utils/make-resource-loader.ts +3 -1
  200. package/src/utils/metrics-summary.ts +459 -0
  201. package/src/utils/metrics.ts +302 -0
  202. package/src/utils/research-export.ts +28 -12
  203. package/src/utils/safe-unref.ts +31 -0
  204. package/src/utils/shared-links.ts +195 -90
  205. package/src/utils/shutdown-manager.ts +65 -0
  206. package/src/utils/stdio-capture.ts +407 -0
  207. package/src/utils/text-utils.ts +258 -11
  208. package/src/utils/tool-usage-tracker.ts +83 -16
  209. package/src/utils/url-utils.ts +255 -0
  210. package/src/utils/user-agent.ts +28 -0
  211. package/src/web-research/browser-search.ts +179 -0
  212. package/src/web-research/retry-utils.ts +173 -77
  213. package/src/web-research/scraper-types.ts +72 -0
  214. package/src/web-research/scraper-utils.ts +434 -0
  215. package/src/web-research/search.ts +78 -218
  216. package/src/web-research/types.ts +9 -24
  217. package/src/web-research/utils.ts +2 -143
  218. package/src/web-research/web-scraper.ts +477 -0
  219. package/src/youtube/index.ts +154 -0
  220. package/src/youtube/potoken.ts +259 -0
  221. package/src/youtube/transcript-client.ts +390 -0
  222. package/src/youtube/video-id.ts +118 -0
  223. package/config/searxng/default-settings.yml +0 -189
  224. package/config/searxng/limiter.toml +0 -34
  225. package/config/tooling/eslint.config.js +0 -73
  226. package/config/tooling/vitest.config.integration.ts +0 -17
  227. package/config/tooling/vitest.config.ts +0 -40
  228. package/config/tooling/vitest.config.unit.ts +0 -12
  229. package/docs/assets/README-banner.jpg +0 -0
  230. package/scripts/setup.js +0 -212
  231. package/src/infrastructure/searxng-lifecycle.ts +0 -644
  232. package/src/infrastructure/searxng-manager.ts +0 -1183
  233. package/src/infrastructure/state-manager.ts +0 -918
  234. package/src/orchestration/deep-research-reducer.ts +0 -129
  235. package/src/orchestration/id-utils.ts +0 -63
  236. package/src/security/nvd.ts +0 -532
  237. package/src/security/osv.ts +0 -487
  238. package/src/stackexchange/cache.ts +0 -111
  239. package/src/stackexchange/output/index.ts +0 -7
  240. package/src/stackexchange/output/json.ts +0 -21
  241. package/src/tui/searxng-status.ts +0 -80
  242. package/src/utils/inject-date.ts +0 -29
  243. package/src/utils/research-error.ts +0 -205
  244. package/src/utils/searxng-config.ts +0 -94
  245. package/src/utils/session-state.ts +0 -295
  246. package/src/web-research/dependencies.ts +0 -20
  247. package/src/web-research/scrapers.ts +0 -935
  248. package/tsconfig.json +0 -40
@@ -0,0 +1,140 @@
1
+ /**
2
+ * Research Cleanup Module
3
+ *
4
+ * Handles cleanup operations for research sessions:
5
+ * - Terminal input draining to prevent protocol response leaks
6
+ * - Wave animation timer cleanup
7
+ * - Session and panel cleanup
8
+ * - Shared links cleanup
9
+ */
10
+
11
+ import type { ExtensionContext } from '@earendil-works/pi-coding-agent';
12
+ import { logger } from '../logger.ts';
13
+ import {
14
+ endResearchSession,
15
+ getPiActivePanels,
16
+ refreshAllSessions,
17
+ } from '../orchestration/session-state.ts';
18
+ import { cleanupSharedLinks } from '../utils/shared-links.ts';
19
+ import type { CleanupContext } from '../types/index.ts';
20
+ import type { ResearchPanelState } from '../types/research-panel-types.ts';
21
+
22
+ export type { CleanupContext };
23
+
24
+ export interface CleanupDependencies {
25
+ ctx: ExtensionContext;
26
+ }
27
+
28
+ export type CleanupFunction = () => Promise<void>;
29
+
30
+ /**
31
+ * Create a cleanup function for a research session
32
+ */
33
+ export function createCleanupFunction(
34
+ cleanupCtx: CleanupContext,
35
+ deps: CleanupDependencies
36
+ ): CleanupFunction {
37
+ const {
38
+ researchId,
39
+ piSessionId,
40
+ masterWidgetId,
41
+ panelState,
42
+ waveTimer,
43
+ unsubOrder,
44
+ } = cleanupCtx;
45
+
46
+ const { ctx } = deps;
47
+
48
+ let cleanupCalled = false;
49
+ let waveTimerRef = waveTimer;
50
+
51
+ // Use reference objects to allow updating after creation
52
+ const unsubOrderContainer = cleanupCtx.unsubOrderRef || { value: unsubOrder };
53
+
54
+ // Store reference objects in cleanup context for later updates
55
+ if (!cleanupCtx.unsubOrderRef) {
56
+ cleanupCtx.unsubOrderRef = unsubOrderContainer;
57
+ }
58
+
59
+ return async () => {
60
+ if (cleanupCalled) return;
61
+ cleanupCalled = true;
62
+
63
+ // Clear wave animation timer
64
+ if (waveTimerRef) {
65
+ clearInterval(waveTimerRef);
66
+ waveTimerRef = null;
67
+ panelState.waveFrame = undefined;
68
+ panelState.waveColors = undefined;
69
+ }
70
+
71
+ if (unsubOrderContainer.value) {
72
+ unsubOrderContainer.value();
73
+ unsubOrderContainer.value = null;
74
+ }
75
+
76
+ endResearchSession(piSessionId, researchId);
77
+ cleanupSharedLinks(researchId);
78
+
79
+ // Clean up session-scoped logger to prevent unbounded Map growth.
80
+ // Each research run creates a logger via getLogger(sessionId) that is
81
+ // never removed otherwise.
82
+ const { resetLogger } = await import('../logger.ts');
83
+ resetLogger(researchId);
84
+
85
+ // FIX (#10): Clear session circuit breaker to prevent unbounded map growth.
86
+ const { clearSessionCircuitBreaker } = await import('../infrastructure/browser/browser-error-utils.ts');
87
+ if (piSessionId) {
88
+ clearSessionCircuitBreaker(piSessionId);
89
+ }
90
+
91
+ const activePanels = getPiActivePanels(piSessionId);
92
+ if (activePanels.length === 0) {
93
+ // ctx.hasUI is a getter that throws "ctx is stale after session replacement or reload"
94
+ // when the session was torn down mid-run (e.g. the user quit while research was in
95
+ // flight). In that case there is no widget left to remove and no live UI to touch, so
96
+ // treat it as no-UI rather than letting the throw surface as a scary "Cleanup failed".
97
+ let hasUI = false;
98
+ try { hasUI = ctx.hasUI; } catch { /* ctx stale (session closed mid-run) → treat as no UI */ }
99
+ if (hasUI) {
100
+ ctx.ui.setWidget(masterWidgetId, undefined);
101
+ const tuiUI = ctx.ui as { setWorkingVisible?: (visible: boolean) => void };
102
+ if (typeof tuiUI?.setWorkingVisible === 'function') {
103
+ tuiUI.setWorkingVisible(true);
104
+ }
105
+ }
106
+ } else {
107
+ refreshAllSessions(piSessionId);
108
+ }
109
+
110
+ logger.info('[research] cleanup completed', { piSessionId, researchId });
111
+ };
112
+ }
113
+
114
+ /**
115
+ * Update the wave timer reference in the cleanup context
116
+ */
117
+ export function updateWaveTimer(cleanupCtx: CleanupContext, timer: NodeJS.Timeout | null): void {
118
+ (cleanupCtx as CleanupContext & { waveTimer?: NodeJS.Timeout | null }).waveTimer = timer;
119
+ }
120
+
121
+ /**
122
+ * Update the unsubOrder reference in the cleanup context
123
+ */
124
+ export function updateUnsubOrder(cleanupCtx: CleanupContext, unsub: (() => void) | null): void {
125
+ if (cleanupCtx.unsubOrderRef) {
126
+ cleanupCtx.unsubOrderRef.value = unsub;
127
+ }
128
+ }
129
+
130
+ /**
131
+ * Stop and clear wave animation
132
+ */
133
+ export function stopWaveAnimation(panelState: ResearchPanelState): void {
134
+ if (panelState.waveTimer) {
135
+ clearInterval(panelState.waveTimer);
136
+ panelState.waveTimer = null;
137
+ }
138
+ panelState.waveFrame = undefined;
139
+ panelState.waveColors = undefined;
140
+ }