@learnrudi/cli 1.10.1 → 1.10.3

package/dist/index.cjs

@@ -1296,17 +1296,17 @@ var require_visit = __commonJS({
     visit.BREAK = BREAK;
     visit.SKIP = SKIP;
     visit.REMOVE = REMOVE;
-    function visit_(key, node, visitor, path35) {
-      const ctrl = callVisitor(key, node, visitor, path35);
+    function visit_(key, node, visitor, path34) {
+      const ctrl = callVisitor(key, node, visitor, path34);
       if (identity.isNode(ctrl) || identity.isPair(ctrl)) {
-        replaceNode(key, path35, ctrl);
-        return visit_(key, ctrl, visitor, path35);
+        replaceNode(key, path34, ctrl);
+        return visit_(key, ctrl, visitor, path34);
       }
       if (typeof ctrl !== "symbol") {
         if (identity.isCollection(node)) {
-          path35 = Object.freeze(path35.concat(node));
+          path34 = Object.freeze(path34.concat(node));
           for (let i2 = 0; i2 < node.items.length; ++i2) {
-            const ci = visit_(i2, node.items[i2], visitor, path35);
+            const ci = visit_(i2, node.items[i2], visitor, path34);
             if (typeof ci === "number")
               i2 = ci - 1;
             else if (ci === BREAK)
@@ -1317,13 +1317,13 @@ var require_visit = __commonJS({
             }
           }
         } else if (identity.isPair(node)) {
-          path35 = Object.freeze(path35.concat(node));
-          const ck = visit_("key", node.key, visitor, path35);
+          path34 = Object.freeze(path34.concat(node));
+          const ck = visit_("key", node.key, visitor, path34);
           if (ck === BREAK)
             return BREAK;
           else if (ck === REMOVE)
             node.key = null;
-          const cv = visit_("value", node.value, visitor, path35);
+          const cv = visit_("value", node.value, visitor, path34);
           if (cv === BREAK)
             return BREAK;
           else if (cv === REMOVE)
@@ -1344,17 +1344,17 @@ var require_visit = __commonJS({
     visitAsync.BREAK = BREAK;
     visitAsync.SKIP = SKIP;
     visitAsync.REMOVE = REMOVE;
-    async function visitAsync_(key, node, visitor, path35) {
-      const ctrl = await callVisitor(key, node, visitor, path35);
+    async function visitAsync_(key, node, visitor, path34) {
+      const ctrl = await callVisitor(key, node, visitor, path34);
       if (identity.isNode(ctrl) || identity.isPair(ctrl)) {
-        replaceNode(key, path35, ctrl);
-        return visitAsync_(key, ctrl, visitor, path35);
+        replaceNode(key, path34, ctrl);
+        return visitAsync_(key, ctrl, visitor, path34);
       }
       if (typeof ctrl !== "symbol") {
         if (identity.isCollection(node)) {
-          path35 = Object.freeze(path35.concat(node));
+          path34 = Object.freeze(path34.concat(node));
           for (let i2 = 0; i2 < node.items.length; ++i2) {
-            const ci = await visitAsync_(i2, node.items[i2], visitor, path35);
+            const ci = await visitAsync_(i2, node.items[i2], visitor, path34);
             if (typeof ci === "number")
               i2 = ci - 1;
             else if (ci === BREAK)
@@ -1365,13 +1365,13 @@ var require_visit = __commonJS({
             }
           }
         } else if (identity.isPair(node)) {
-          path35 = Object.freeze(path35.concat(node));
-          const ck = await visitAsync_("key", node.key, visitor, path35);
+          path34 = Object.freeze(path34.concat(node));
+          const ck = await visitAsync_("key", node.key, visitor, path34);
           if (ck === BREAK)
             return BREAK;
           else if (ck === REMOVE)
             node.key = null;
-          const cv = await visitAsync_("value", node.value, visitor, path35);
+          const cv = await visitAsync_("value", node.value, visitor, path34);
           if (cv === BREAK)
             return BREAK;
           else if (cv === REMOVE)
@@ -1398,23 +1398,23 @@ var require_visit = __commonJS({
       }
       return visitor;
     }
-    function callVisitor(key, node, visitor, path35) {
+    function callVisitor(key, node, visitor, path34) {
       if (typeof visitor === "function")
-        return visitor(key, node, path35);
+        return visitor(key, node, path34);
       if (identity.isMap(node))
-        return visitor.Map?.(key, node, path35);
+        return visitor.Map?.(key, node, path34);
       if (identity.isSeq(node))
-        return visitor.Seq?.(key, node, path35);
+        return visitor.Seq?.(key, node, path34);
       if (identity.isPair(node))
-        return visitor.Pair?.(key, node, path35);
+        return visitor.Pair?.(key, node, path34);
       if (identity.isScalar(node))
-        return visitor.Scalar?.(key, node, path35);
+        return visitor.Scalar?.(key, node, path34);
       if (identity.isAlias(node))
-        return visitor.Alias?.(key, node, path35);
+        return visitor.Alias?.(key, node, path34);
       return void 0;
     }
-    function replaceNode(key, path35, node) {
-      const parent = path35[path35.length - 1];
+    function replaceNode(key, path34, node) {
+      const parent = path34[path34.length - 1];
       if (identity.isCollection(parent)) {
         parent.items[key] = node;
       } else if (identity.isPair(parent)) {
@@ -2022,10 +2022,10 @@ var require_Collection = __commonJS({
     var createNode = require_createNode();
     var identity = require_identity();
     var Node = require_Node();
-    function collectionFromPath(schema, path35, value) {
+    function collectionFromPath(schema, path34, value) {
       let v2 = value;
-      for (let i2 = path35.length - 1; i2 >= 0; --i2) {
-        const k2 = path35[i2];
+      for (let i2 = path34.length - 1; i2 >= 0; --i2) {
+        const k2 = path34[i2];
         if (typeof k2 === "number" && Number.isInteger(k2) && k2 >= 0) {
           const a2 = [];
           a2[k2] = v2;
@@ -2044,7 +2044,7 @@ var require_Collection = __commonJS({
         sourceObjects: /* @__PURE__ */ new Map()
       });
     }
-    var isEmptyPath = (path35) => path35 == null || typeof path35 === "object" && !!path35[Symbol.iterator]().next().done;
+    var isEmptyPath = (path34) => path34 == null || typeof path34 === "object" && !!path34[Symbol.iterator]().next().done;
     var Collection = class extends Node.NodeBase {
       constructor(type, schema) {
         super(type);
@@ -2074,11 +2074,11 @@ var require_Collection = __commonJS({
        * be a Pair instance or a `{ key, value }` object, which may not have a key
        * that already exists in the map.
        */
-      addIn(path35, value) {
-        if (isEmptyPath(path35))
+      addIn(path34, value) {
+        if (isEmptyPath(path34))
           this.add(value);
         else {
-          const [key, ...rest] = path35;
+          const [key, ...rest] = path34;
           const node = this.get(key, true);
           if (identity.isCollection(node))
             node.addIn(rest, value);
@@ -2092,8 +2092,8 @@ var require_Collection = __commonJS({
        * Removes a value from the collection.
        * @returns `true` if the item was found and removed.
        */
-      deleteIn(path35) {
-        const [key, ...rest] = path35;
+      deleteIn(path34) {
+        const [key, ...rest] = path34;
         if (rest.length === 0)
           return this.delete(key);
         const node = this.get(key, true);
@@ -2107,8 +2107,8 @@ var require_Collection = __commonJS({
        * scalar values from their surrounding node; to disable set `keepScalar` to
        * `true` (collections are always returned intact).
        */
-      getIn(path35, keepScalar) {
-        const [key, ...rest] = path35;
+      getIn(path34, keepScalar) {
+        const [key, ...rest] = path34;
         const node = this.get(key, true);
         if (rest.length === 0)
           return !keepScalar && identity.isScalar(node) ? node.value : node;
@@ -2126,8 +2126,8 @@ var require_Collection = __commonJS({
       /**
        * Checks if the collection includes a value with the key `key`.
        */
-      hasIn(path35) {
-        const [key, ...rest] = path35;
+      hasIn(path34) {
+        const [key, ...rest] = path34;
         if (rest.length === 0)
           return this.has(key);
         const node = this.get(key, true);
@@ -2137,8 +2137,8 @@ var require_Collection = __commonJS({
        * Sets a value in this collection. For `!!set`, `value` needs to be a
        * boolean to add/remove the item from the set.
        */
-      setIn(path35, value) {
-        const [key, ...rest] = path35;
+      setIn(path34, value) {
+        const [key, ...rest] = path34;
         if (rest.length === 0) {
           this.set(key, value);
         } else {
@@ -4642,9 +4642,9 @@ var require_Document = __commonJS({
           this.contents.add(value);
       }
       /** Adds a value to the document. */
-      addIn(path35, value) {
+      addIn(path34, value) {
         if (assertCollection(this.contents))
-          this.contents.addIn(path35, value);
+          this.contents.addIn(path34, value);
       }
       /**
        * Create a new `Alias` node, ensuring that the target `node` has the required anchor.
@@ -4719,14 +4719,14 @@ var require_Document = __commonJS({
        * Removes a value from the document.
        * @returns `true` if the item was found and removed.
        */
-      deleteIn(path35) {
-        if (Collection.isEmptyPath(path35)) {
+      deleteIn(path34) {
+        if (Collection.isEmptyPath(path34)) {
           if (this.contents == null)
             return false;
           this.contents = null;
           return true;
         }
-        return assertCollection(this.contents) ? this.contents.deleteIn(path35) : false;
+        return assertCollection(this.contents) ? this.contents.deleteIn(path34) : false;
       }
       /**
        * Returns item at `key`, or `undefined` if not found. By default unwraps
@@ -4741,10 +4741,10 @@ var require_Document = __commonJS({
        * scalar values from their surrounding node; to disable set `keepScalar` to
        * `true` (collections are always returned intact).
        */
-      getIn(path35, keepScalar) {
-        if (Collection.isEmptyPath(path35))
+      getIn(path34, keepScalar) {
+        if (Collection.isEmptyPath(path34))
           return !keepScalar && identity.isScalar(this.contents) ? this.contents.value : this.contents;
-        return identity.isCollection(this.contents) ? this.contents.getIn(path35, keepScalar) : void 0;
+        return identity.isCollection(this.contents) ? this.contents.getIn(path34, keepScalar) : void 0;
       }
       /**
        * Checks if the document includes a value with the key `key`.
@@ -4755,10 +4755,10 @@ var require_Document = __commonJS({
       /**
        * Checks if the document includes a value at `path`.
        */
-      hasIn(path35) {
-        if (Collection.isEmptyPath(path35))
+      hasIn(path34) {
+        if (Collection.isEmptyPath(path34))
           return this.contents !== void 0;
-        return identity.isCollection(this.contents) ? this.contents.hasIn(path35) : false;
+        return identity.isCollection(this.contents) ? this.contents.hasIn(path34) : false;
       }
       /**
        * Sets a value in this document. For `!!set`, `value` needs to be a
@@ -4775,13 +4775,13 @@ var require_Document = __commonJS({
        * Sets a value in this document. For `!!set`, `value` needs to be a
        * boolean to add/remove the item from the set.
        */
-      setIn(path35, value) {
-        if (Collection.isEmptyPath(path35)) {
+      setIn(path34, value) {
+        if (Collection.isEmptyPath(path34)) {
           this.contents = value;
         } else if (this.contents == null) {
-          this.contents = Collection.collectionFromPath(this.schema, Array.from(path35), value);
+          this.contents = Collection.collectionFromPath(this.schema, Array.from(path34), value);
         } else if (assertCollection(this.contents)) {
-          this.contents.setIn(path35, value);
+          this.contents.setIn(path34, value);
         }
       }
       /**
@@ -6733,9 +6733,9 @@ var require_cst_visit = __commonJS({
     visit.BREAK = BREAK;
     visit.SKIP = SKIP;
     visit.REMOVE = REMOVE;
-    visit.itemAtPath = (cst, path35) => {
+    visit.itemAtPath = (cst, path34) => {
       let item = cst;
-      for (const [field, index] of path35) {
+      for (const [field, index] of path34) {
         const tok = item?.[field];
         if (tok && "items" in tok) {
           item = tok.items[index];
@@ -6744,23 +6744,23 @@ var require_cst_visit = __commonJS({
       }
       return item;
     };
-    visit.parentCollection = (cst, path35) => {
-      const parent = visit.itemAtPath(cst, path35.slice(0, -1));
-      const field = path35[path35.length - 1][0];
+    visit.parentCollection = (cst, path34) => {
+      const parent = visit.itemAtPath(cst, path34.slice(0, -1));
+      const field = path34[path34.length - 1][0];
       const coll = parent?.[field];
       if (coll && "items" in coll)
         return coll;
       throw new Error("Parent collection not found");
     };
-    function _visit(path35, item, visitor) {
-      let ctrl = visitor(item, path35);
+    function _visit(path34, item, visitor) {
+      let ctrl = visitor(item, path34);
       if (typeof ctrl === "symbol")
         return ctrl;
       for (const field of ["key", "value"]) {
         const token = item[field];
         if (token && "items" in token) {
           for (let i2 = 0; i2 < token.items.length; ++i2) {
-            const ci = _visit(Object.freeze(path35.concat([[field, i2]])), token.items[i2], visitor);
+            const ci = _visit(Object.freeze(path34.concat([[field, i2]])), token.items[i2], visitor);
             if (typeof ci === "number")
               i2 = ci - 1;
             else if (ci === BREAK)
@@ -6771,10 +6771,10 @@ var require_cst_visit = __commonJS({
             }
           }
           if (typeof ctrl === "function" && field === "key")
-            ctrl = ctrl(item, path35);
+            ctrl = ctrl(item, path34);
         }
       }
-      return typeof ctrl === "function" ? ctrl(item, path35) : ctrl;
+      return typeof ctrl === "function" ? ctrl(item, path34) : ctrl;
     }
     exports2.visit = visit;
   }
@@ -8059,14 +8059,14 @@ var require_parser = __commonJS({
             case "scalar":
             case "single-quoted-scalar":
             case "double-quoted-scalar": {
-              const fs35 = this.flowScalar(this.type);
+              const fs34 = this.flowScalar(this.type);
               if (atNextItem || it2.value) {
-                map.items.push({ start, key: fs35, sep: [] });
+                map.items.push({ start, key: fs34, sep: [] });
                 this.onKeyLine = true;
               } else if (it2.sep) {
-                this.stack.push(fs35);
+                this.stack.push(fs34);
               } else {
-                Object.assign(it2, { key: fs35, sep: [] });
+                Object.assign(it2, { key: fs34, sep: [] });
                 this.onKeyLine = true;
               }
               return;
@@ -8194,13 +8194,13 @@ var require_parser = __commonJS({
             case "scalar":
             case "single-quoted-scalar":
             case "double-quoted-scalar": {
-              const fs35 = this.flowScalar(this.type);
+              const fs34 = this.flowScalar(this.type);
               if (!it2 || it2.value)
-                fc.items.push({ start: [], key: fs35, sep: [] });
+                fc.items.push({ start: [], key: fs34, sep: [] });
               else if (it2.sep)
-                this.stack.push(fs35);
+                this.stack.push(fs34);
               else
-                Object.assign(it2, { key: fs35, sep: [] });
+                Object.assign(it2, { key: fs34, sep: [] });
               return;
             }
             case "flow-map-end":
@@ -13605,8 +13605,8 @@ var require_utils = __commonJS({
       }
       return ind;
     }
-    function removeDotSegments(path35) {
-      let input = path35;
+    function removeDotSegments(path34) {
+      let input = path34;
       const output = [];
       let nextSlash = -1;
       let len = 0;
@@ -13805,8 +13805,8 @@ var require_schemes = __commonJS({
         wsComponent.secure = void 0;
       }
       if (wsComponent.resourceName) {
-        const [path35, query] = wsComponent.resourceName.split("?");
-        wsComponent.path = path35 && path35 !== "/" ? path35 : void 0;
+        const [path34, query] = wsComponent.resourceName.split("?");
+        wsComponent.path = path34 && path34 !== "/" ? path34 : void 0;
         wsComponent.query = query;
         wsComponent.resourceName = void 0;
       }
@@ -17159,12 +17159,12 @@ var require_dist2 = __commonJS({
         throw new Error(`Unknown format "${name}"`);
       return f2;
     };
-    function addFormats2(ajv2, list, fs35, exportName) {
+    function addFormats2(ajv2, list, fs34, exportName) {
       var _a2;
       var _b;
       (_a2 = (_b = ajv2.opts.code).formats) !== null && _a2 !== void 0 ? _a2 : _b.formats = (0, codegen_1._)`require("ajv-formats/dist/formats").${exportName}`;
       for (const f2 of list)
-        ajv2.addFormat(f2, fs35[f2]);
+        ajv2.addFormat(f2, fs34[f2]);
     }
     module2.exports = exports2 = formatsPlugin;
     Object.defineProperty(exports2, "__esModule", { value: true });
@@ -18864,14 +18864,14 @@ var require_url_state_machine = __commonJS({
       return url.replace(/\u0009|\u000A|\u000D/g, "");
     }
     function shortenPath(url) {
-      const path35 = url.path;
-      if (path35.length === 0) {
+      const path34 = url.path;
+      if (path34.length === 0) {
         return;
       }
-      if (url.scheme === "file" && path35.length === 1 && isNormalizedWindowsDriveLetter(path35[0])) {
+      if (url.scheme === "file" && path34.length === 1 && isNormalizedWindowsDriveLetter(path34[0])) {
         return;
       }
-      path35.pop();
+      path34.pop();
     }
     function includesCredentials(url) {
       return url.username !== "" || url.password !== "";
@@ -24855,14 +24855,14 @@ __export(fileFromPath_exports, {
   fileFromPathSync: () => fileFromPathSync,
   isFile: () => isFile
 });
-function createFileFromPath(path35, { mtimeMs, size }, filenameOrOptions, options = {}) {
+function createFileFromPath(path34, { mtimeMs, size }, filenameOrOptions, options = {}) {
   let filename;
   if (isPlainObject_default2(filenameOrOptions)) {
     [options, filename] = [filenameOrOptions, void 0];
   } else {
     filename = filenameOrOptions;
   }
-  const file = new FileFromPath({ path: path35, size, lastModified: mtimeMs });
+  const file = new FileFromPath({ path: path34, size, lastModified: mtimeMs });
   if (!filename) {
     filename = file.name;
   }
@@ -24871,13 +24871,13 @@ function createFileFromPath(path35, { mtimeMs, size }, filenameOrOptions, option
     lastModified: file.lastModified
   });
 }
-function fileFromPathSync(path35, filenameOrOptions, options = {}) {
-  const stats = (0, import_fs16.statSync)(path35);
-  return createFileFromPath(path35, stats, filenameOrOptions, options);
+function fileFromPathSync(path34, filenameOrOptions, options = {}) {
+  const stats = (0, import_fs16.statSync)(path34);
+  return createFileFromPath(path34, stats, filenameOrOptions, options);
 }
-async function fileFromPath2(path35, filenameOrOptions, options) {
-  const stats = await import_fs16.promises.stat(path35);
-  return createFileFromPath(path35, stats, filenameOrOptions, options);
+async function fileFromPath2(path34, filenameOrOptions, options) {
+  const stats = await import_fs16.promises.stat(path34);
+  return createFileFromPath(path34, stats, filenameOrOptions, options);
 }
 var import_fs16, import_path17, import_node_domexception, __classPrivateFieldSet4, __classPrivateFieldGet5, _FileFromPath_path, _FileFromPath_start, MESSAGE, FileFromPath;
 var init_fileFromPath = __esm({
@@ -24938,13 +24938,13 @@ var init_fileFromPath = __esm({
 });
 
 // node_modules/.pnpm/openai@4.104.0/node_modules/openai/_shims/node-runtime.mjs
-async function fileFromPath3(path35, ...args) {
+async function fileFromPath3(path34, ...args) {
   const { fileFromPath: _fileFromPath } = await Promise.resolve().then(() => (init_fileFromPath(), fileFromPath_exports));
   if (!fileFromPathWarned) {
-    console.warn(`fileFromPath is deprecated; use fs.createReadStream(${JSON.stringify(path35)}) instead`);
+    console.warn(`fileFromPath is deprecated; use fs.createReadStream(${JSON.stringify(path34)}) instead`);
     fileFromPathWarned = true;
   }
-  return await _fileFromPath(path35, ...args);
+  return await _fileFromPath(path34, ...args);
 }
 async function getMultipartRequestOptions2(form, opts) {
   const encoder = new FormDataEncoder(form);
@@ -25877,29 +25877,29 @@ var init_core = __esm({
       defaultIdempotencyKey() {
         return `stainless-node-retry-${uuid4()}`;
       }
-      get(path35, opts) {
-        return this.methodRequest("get", path35, opts);
+      get(path34, opts) {
+        return this.methodRequest("get", path34, opts);
       }
-      post(path35, opts) {
-        return this.methodRequest("post", path35, opts);
+      post(path34, opts) {
+        return this.methodRequest("post", path34, opts);
       }
-      patch(path35, opts) {
-        return this.methodRequest("patch", path35, opts);
+      patch(path34, opts) {
+        return this.methodRequest("patch", path34, opts);
       }
-      put(path35, opts) {
-        return this.methodRequest("put", path35, opts);
+      put(path34, opts) {
+        return this.methodRequest("put", path34, opts);
       }
-      delete(path35, opts) {
-        return this.methodRequest("delete", path35, opts);
+      delete(path34, opts) {
+        return this.methodRequest("delete", path34, opts);
       }
-      methodRequest(method, path35, opts) {
+      methodRequest(method, path34, opts) {
         return this.request(Promise.resolve(opts).then(async (opts2) => {
           const body = opts2 && isBlobLike(opts2?.body) ? new DataView(await opts2.body.arrayBuffer()) : opts2?.body instanceof DataView ? opts2.body : opts2?.body instanceof ArrayBuffer ? new DataView(opts2.body) : opts2 && ArrayBuffer.isView(opts2?.body) ? new DataView(opts2.body.buffer) : opts2?.body;
-          return { method, path: path35, ...opts2, body };
+          return { method, path: path34, ...opts2, body };
         }));
       }
-      getAPIList(path35, Page2, opts) {
-        return this.requestAPIList(Page2, { method: "get", path: path35, ...opts });
+      getAPIList(path34, Page2, opts) {
+        return this.requestAPIList(Page2, { method: "get", path: path34, ...opts });
       }
       calculateContentLength(body) {
         if (typeof body === "string") {
@@ -25918,10 +25918,10 @@ var init_core = __esm({
       }
       buildRequest(inputOptions, { retryCount = 0 } = {}) {
         const options = { ...inputOptions };
-        const { method, path: path35, query, headers = {} } = options;
+        const { method, path: path34, query, headers = {} } = options;
         const body = ArrayBuffer.isView(options.body) || options.__binaryRequest && typeof options.body === "string" ? options.body : isMultipartBody(options.body) ? options.body.body : options.body ? JSON.stringify(options.body, null, 2) : null;
         const contentLength = this.calculateContentLength(body);
-        const url = this.buildURL(path35, query);
+        const url = this.buildURL(path34, query);
         if ("timeout" in options)
           validatePositiveInteger("timeout", options.timeout);
         options.timeout = options.timeout ?? this.timeout;
@@ -26037,8 +26037,8 @@ var init_core = __esm({
         const request = this.makeRequest(options, null);
         return new PagePromise(this, request, Page2);
       }
-      buildURL(path35, query) {
-        const url = isAbsoluteURL(path35) ? new URL(path35) : new URL(this.baseURL + (this.baseURL.endsWith("/") && path35.startsWith("/") ? path35.slice(1) : path35));
+      buildURL(path34, query) {
+        const url = isAbsoluteURL(path34) ? new URL(path34) : new URL(this.baseURL + (this.baseURL.endsWith("/") && path34.startsWith("/") ? path34.slice(1) : path34));
         const defaultQuery = this.defaultQuery();
         if (!isEmptyObj(defaultQuery)) {
           query = { ...defaultQuery, ...query };
@@ -31848,60 +31848,64 @@ USAGE
 SETUP
   init                  Bootstrap RUDI (download runtimes, create shims)
 
-INTROSPECTION
-  home                  Show ~/.rudi structure and installed packages
-  stacks                List installed stacks
-  runtimes              List installed runtimes
-  binaries              List installed binaries
-  agents                List installed agents
-  prompts               List installed prompts
-  doctor                Check system health and dependencies
-  doctor --all          Show all available runtimes/binaries from registry
-
-PACKAGE MANAGEMENT
+REGISTRY
   search <query>        Search registry for packages
   search --all          List all available packages
   install <pkg>         Install a package
   remove <pkg>          Remove a package
   update [pkg]          Update packages
-  run <stack>           Run a stack
 
-DATABASE
-  db stats              Show database statistics
-  db search <query>     Search conversation history
-  db reset --force      Delete all data
-  db vacuum             Compact and reclaim space
-  db tables             Show table row counts
+INSTALLED
+  list [kind]           List installed packages (stacks, prompts, runtimes, binaries, agents)
+  home                  Show ~/.rudi structure and status
+  doctor                Check system health and dependencies
+  which <cmd>           Show path to a command
+  info <pkg>            Show package details
 
-SESSION IMPORT
-  import sessions       Import from AI providers (claude, codex, gemini)
-  import status         Show import status
+AGENT INTEGRATION
+  integrate <agent>     Wire up RUDI router (claude, cursor, gemini, codex, all)
+  integrate --list      Show detected agents
+  index                 Rebuild tool cache for router
+
+RUN
+  run <stack>           Run a stack directly
 
 SECRETS
   secrets set <name>    Set a secret
   secrets list          List configured secrets
   secrets remove <name> Remove a secret
 
+DATABASE
+  db stats              Show database statistics
+  db search <query>     Search conversation history
+  db tables             Show table row counts
+  db vacuum             Compact and reclaim space
+
+SESSIONS
+  session list          List sessions
+  session search <q>    Search session content
+  session export <id>   Export a session
+  session index         Build search embeddings
+
 OPTIONS
   -h, --help           Show help
   -v, --version        Show version
   --verbose            Verbose output
   --json               Output as JSON
-  --force              Force operation
 
 EXAMPLES
-  rudi home                    Show ~/.rudi structure
-  rudi runtimes                List installed runtimes
-  rudi install runtime:python  Install Python in ~/.rudi
-  rudi install binary:ffmpeg   Install ffmpeg
-  rudi doctor --all            Show all available deps
+  rudi search --all              List all available packages
+  rudi install slack             Install Slack stack
+  rudi secrets set SLACK_TOKEN   Configure secret
+  rudi integrate claude          Wire up Claude Desktop/Code
+  rudi list                      Show installed packages
 
 PACKAGE TYPES
-  stack:name           MCP server stack
-  runtime:name         Node, Python, Deno, Bun
-  binary:name          ffmpeg, ripgrep, etc.
-  agent:name           Claude, Codex, Gemini CLIs
-  prompt:name          Prompt template
+  stack:<name>         MCP server stack
+  runtime:<name>       Node, Python, Deno, Bun
+  binary:<name>        ffmpeg, ripgrep, etc.
+  agent:<name>         Claude, Codex, Gemini CLIs
+  prompt:<name>        Prompt template
 `);
 }
 function printCommandHelp(command) {
@@ -32119,6 +32123,38 @@ EXAMPLES
   rudi doctor
   rudi doctor --fix
   rudi doctor --all
+`,
+    integrate: `
+rudi integrate - Wire RUDI router into agent configs
+
+USAGE
+  rudi integrate <agent>     Integrate with specific agent
+  rudi integrate all         Integrate with all detected agents
+  rudi integrate --list      Show detected agents
+
+AGENTS
+  claude       Claude Desktop + Claude Code
+  cursor       Cursor IDE
+  windsurf     Windsurf IDE
+  vscode       VS Code / GitHub Copilot
+  gemini       Gemini CLI
+  codex        OpenAI Codex CLI
+  zed          Zed Editor
+
+OPTIONS
+  --verbose    Show detailed output
+  --dry-run    Show what would be done without making changes
+
+WHAT IT DOES
+  1. Detects agent config files
+  2. Creates backup before modifying
+  3. Adds RUDI router entry (single MCP server for all stacks)
+  4. Cleans up old direct stack entries
+
+EXAMPLES
+  rudi integrate claude
+  rudi integrate all
+  rudi integrate --list
 `,
     logs: `
 rudi logs - Query agent visibility logs
@@ -33235,11 +33271,11 @@ async function runStack(id, options = {}) {
   const startTime = Date.now();
   const packagePath = getPackagePath2(id);
   const manifestPath = import_path11.default.join(packagePath, "manifest.json");
-  const { default: fs35 } = await import("fs");
-  if (!fs35.existsSync(manifestPath)) {
+  const { default: fs34 } = await import("fs");
+  if (!fs34.existsSync(manifestPath)) {
     throw new Error(`Stack manifest not found: ${id}`);
   }
-  const manifest = JSON.parse(fs35.readFileSync(manifestPath, "utf-8"));
+  const manifest = JSON.parse(fs34.readFileSync(manifestPath, "utf-8"));
   const { command, args } = resolveCommandFromManifest(manifest, packagePath);
   const secrets = await getSecrets(manifest.requires?.secrets || []);
   const runEnv = {
@@ -34225,7 +34261,7 @@ var import_fs13 = __toESM(require("fs"), 1);
 init_src2();
 
 // packages/db/src/schema.js
-var SCHEMA_VERSION = 5;
+var SCHEMA_VERSION = 6;
 var SCHEMA_SQL = `
 -- Schema version tracking
 CREATE TABLE IF NOT EXISTS schema_version (
@@ -34246,6 +34282,7 @@ CREATE TABLE IF NOT EXISTS projects (
   cross_project_id TEXT,
   session_count INTEGER DEFAULT 0,
   total_cost REAL DEFAULT 0,
+  settings TEXT,
   created_at TEXT NOT NULL,
 
   UNIQUE(provider, name)
@@ -34267,15 +34304,17 @@ CREATE TABLE IF NOT EXISTS sessions (
 
   -- Display
   title TEXT,
+  title_override TEXT,
   snippet TEXT,
 
   -- State
   status TEXT DEFAULT 'active' CHECK (status IN ('active', 'archived', 'deleted')),
   model TEXT,
+  system_prompt TEXT,
 
   -- Context
   cwd TEXT,
-  dir_scope TEXT DEFAULT 'project',
+  dir_scope TEXT DEFAULT 'project' CHECK (dir_scope IN ('project', 'home')),
   git_branch TEXT,
   native_storage_path TEXT,
 
@@ -34285,7 +34324,8 @@ CREATE TABLE IF NOT EXISTS sessions (
   parent_session_id TEXT,
   agent_id TEXT,
   is_sidechain INTEGER DEFAULT 0,
-  session_type TEXT DEFAULT 'task',
+  session_type TEXT DEFAULT 'main',
+  slug TEXT,
   version TEXT,
   user_type TEXT DEFAULT 'external',
 
@@ -34308,8 +34348,13 @@ CREATE INDEX IF NOT EXISTS idx_sessions_provider ON sessions(provider);
 CREATE INDEX IF NOT EXISTS idx_sessions_project ON sessions(project_id);
 CREATE INDEX IF NOT EXISTS idx_sessions_status ON sessions(status);
 CREATE INDEX IF NOT EXISTS idx_sessions_last_active ON sessions(last_active_at DESC);
-CREATE INDEX IF NOT EXISTS idx_sessions_provider_session ON sessions(provider, provider_session_id);
+CREATE UNIQUE INDEX IF NOT EXISTS idx_sessions_provider_session_unique
+  ON sessions(provider, provider_session_id)
+  WHERE provider_session_id IS NOT NULL AND status != 'deleted';
 CREATE INDEX IF NOT EXISTS idx_sessions_cwd ON sessions(cwd);
+CREATE INDEX IF NOT EXISTS idx_sessions_parent ON sessions(parent_session_id);
+CREATE INDEX IF NOT EXISTS idx_sessions_agent ON sessions(agent_id);
+CREATE INDEX IF NOT EXISTS idx_sessions_type ON sessions(session_type);
 
 -- Turns (individual user->assistant exchanges)
 CREATE TABLE IF NOT EXISTS turns (
@@ -34317,6 +34362,7 @@ CREATE TABLE IF NOT EXISTS turns (
   session_id TEXT NOT NULL,
   provider TEXT NOT NULL,
   provider_session_id TEXT,
+  provider_turn_id TEXT,
 
   -- Sequence
   turn_number INTEGER NOT NULL,
@@ -34329,6 +34375,7 @@ CREATE TABLE IF NOT EXISTS turns (
   -- Config at time of turn
   model TEXT,
   permission_mode TEXT,
+  system_prompt TEXT,
 
   -- Metrics
   cost REAL,
@@ -34345,9 +34392,33 @@ CREATE TABLE IF NOT EXISTS turns (
 
   -- Rich metadata (JSON)
   tools_used TEXT,
+  tool_results TEXT,
+  todos TEXT,
+  thinking_config TEXT,
+  image_ids TEXT,
+  compact_metadata TEXT,
+
+  -- Turn linking
+  parent_turn_id TEXT,
+  uuid TEXT,
+  logical_parent_id TEXT,
+  leaf_uuid TEXT,
+
+  -- Message metadata
+  user_type TEXT,
+  is_meta INTEGER DEFAULT 0,
+  display_only INTEGER DEFAULT 0,
+
+  -- API metadata
+  service_tier TEXT,
+  api_request_id TEXT,
+
+  -- Event classification
+  kind TEXT DEFAULT 'message' CHECK (kind IN ('message', 'display', 'summary', 'tool', 'error')),
 
   -- Timestamps
   ts TEXT NOT NULL,
+  ts_ms INTEGER,
 
   FOREIGN KEY (session_id) REFERENCES sessions(id) ON DELETE CASCADE
 );
@@ -34356,6 +34427,9 @@ CREATE INDEX IF NOT EXISTS idx_turns_session ON turns(session_id);
 CREATE INDEX IF NOT EXISTS idx_turns_ts ON turns(ts DESC);
 CREATE INDEX IF NOT EXISTS idx_turns_model ON turns(model);
 CREATE INDEX IF NOT EXISTS idx_turns_session_number ON turns(session_id, turn_number);
+CREATE INDEX IF NOT EXISTS idx_turns_session_ts_ms ON turns(session_id, ts_ms);
+CREATE UNIQUE INDEX IF NOT EXISTS idx_turns_provider_dedup
+  ON turns(session_id, provider_turn_id) WHERE provider_turn_id IS NOT NULL;
 
 -- Full-text search on turns
 CREATE VIRTUAL TABLE IF NOT EXISTS turns_fts USING fts5(
@@ -34417,6 +34491,160 @@ CREATE TABLE IF NOT EXISTS model_pricing (
 CREATE INDEX IF NOT EXISTS idx_model_pricing_provider ON model_pricing(provider);
 CREATE INDEX IF NOT EXISTS idx_model_pricing_pattern ON model_pricing(model_pattern);
 
+-- =============================================================================
+-- FILE POSITIONS (session file tailing)
+-- =============================================================================
+
+CREATE TABLE IF NOT EXISTS file_positions (
+  file_path TEXT PRIMARY KEY,
+  byte_offset INTEGER NOT NULL DEFAULT 0,
+  file_size INTEGER NOT NULL DEFAULT 0,
+  mtime_ms INTEGER NOT NULL DEFAULT 0,
+  inode TEXT,
+  provider TEXT NOT NULL CHECK (provider IN ('claude', 'codex', 'gemini', 'ollama')),
+  last_synced_at TEXT NOT NULL,
+  created_at TEXT NOT NULL
+);
+
+CREATE INDEX IF NOT EXISTS idx_file_positions_provider ON file_positions(provider);
+
+-- =============================================================================
+-- FILE HISTORY (tracked files / revisions)
+-- =============================================================================
+
+CREATE TABLE IF NOT EXISTS tracked_files (
+  id TEXT PRIMARY KEY,
+  current_path TEXT NOT NULL,
+  risk_level TEXT DEFAULT 'low' CHECK (risk_level IN ('low', 'medium', 'high')),
+  created_at TEXT NOT NULL,
+  deleted_at TEXT
+);
+
+CREATE UNIQUE INDEX IF NOT EXISTS idx_tracked_files_path_active
+  ON tracked_files(current_path) WHERE deleted_at IS NULL;
+CREATE INDEX IF NOT EXISTS idx_tracked_files_path ON tracked_files(current_path);
+CREATE INDEX IF NOT EXISTS idx_tracked_files_active ON tracked_files(deleted_at) WHERE deleted_at IS NULL;
+
+CREATE TABLE IF NOT EXISTS file_revisions (
+  id TEXT PRIMARY KEY,
+  file_id TEXT NOT NULL,
+  revision_number INTEGER NOT NULL,
+  parent_revision_id TEXT,
+  content_hash TEXT NOT NULL,
+  size_bytes INTEGER NOT NULL,
+  kind TEXT NOT NULL CHECK (kind IN ('edit', 'revert', 'import', 'external', 'delete')),
+  author TEXT NOT NULL CHECK (author IN ('agent', 'user', 'external', 'system')),
+  summary TEXT,
+  is_binary INTEGER DEFAULT 0 CHECK (is_binary IN (0, 1)),
+  reverted_to_revision_id TEXT,
+  created_at TEXT NOT NULL,
+  path_at_revision TEXT NOT NULL,
+  FOREIGN KEY (file_id) REFERENCES tracked_files(id) ON DELETE CASCADE,
+  FOREIGN KEY (parent_revision_id) REFERENCES file_revisions(id),
+  FOREIGN KEY (reverted_to_revision_id) REFERENCES file_revisions(id)
+);
+
+CREATE INDEX IF NOT EXISTS idx_file_revisions_file ON file_revisions(file_id, created_at DESC);
+CREATE INDEX IF NOT EXISTS idx_file_revisions_file_rev ON file_revisions(file_id, revision_number DESC);
+CREATE INDEX IF NOT EXISTS idx_file_revisions_hash ON file_revisions(content_hash);
+CREATE INDEX IF NOT EXISTS idx_file_revisions_path ON file_revisions(path_at_revision);
+CREATE UNIQUE INDEX IF NOT EXISTS idx_file_revisions_number ON file_revisions(file_id, revision_number);
+
+-- =============================================================================
+-- FILE CHANGES / SYSTEM EVENTS
+-- =============================================================================
+
+CREATE TABLE IF NOT EXISTS file_changes (
+  id TEXT PRIMARY KEY,
+  session_id TEXT NOT NULL,
+  turn_id TEXT,
+  file_path TEXT NOT NULL,
+  operation TEXT NOT NULL,
+  content_before_hash TEXT,
+  content_after_hash TEXT,
+  diff_summary TEXT,
+  ts TEXT NOT NULL,
+  ts_ms INTEGER,
+  FOREIGN KEY (session_id) REFERENCES sessions(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_file_changes_session ON file_changes(session_id);
+CREATE INDEX IF NOT EXISTS idx_file_changes_path ON file_changes(file_path);
+CREATE INDEX IF NOT EXISTS idx_file_changes_ts ON file_changes(ts_ms);
+
+CREATE TABLE IF NOT EXISTS system_events (
+  id TEXT PRIMARY KEY,
+  session_id TEXT NOT NULL,
+  event_type TEXT NOT NULL,
+  payload TEXT,
+  ts TEXT NOT NULL,
+  ts_ms INTEGER,
+  FOREIGN KEY (session_id) REFERENCES sessions(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_system_events_session ON system_events(session_id);
+CREATE INDEX IF NOT EXISTS idx_system_events_type ON system_events(event_type);
+
+-- =============================================================================
+-- SESSION RUNTIME
+-- =============================================================================
+
+CREATE TABLE IF NOT EXISTS session_runtime_state (
+  session_id TEXT PRIMARY KEY,
+  status TEXT NOT NULL CHECK(status IN ('running','completed','error','stopped')),
+  provider TEXT,
+  provider_session_id TEXT,
+  started_at TEXT NOT NULL,
+  updated_at TEXT NOT NULL,
+  completed_at TEXT,
+  last_seq INTEGER NOT NULL DEFAULT 0,
+  cost_total REAL NOT NULL DEFAULT 0,
+  tokens_total INTEGER NOT NULL DEFAULT 0,
+  unseen_completion INTEGER NOT NULL DEFAULT 0,
+  last_error TEXT
+);
+
+CREATE TABLE IF NOT EXISTS session_runtime_events (
+  session_id TEXT NOT NULL,
+  seq INTEGER NOT NULL,
+  type TEXT NOT NULL,
+  payload_json TEXT NOT NULL,
+  ts TEXT NOT NULL,
+  PRIMARY KEY (session_id, seq)
+);
+
+CREATE INDEX IF NOT EXISTS idx_session_runtime_events_session_ts
+  ON session_runtime_events(session_id, ts);
+
+-- =============================================================================
+-- OBSERVABILITY LOGS
+-- =============================================================================
+
+CREATE TABLE IF NOT EXISTS logs (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  timestamp INTEGER NOT NULL,
+  source TEXT NOT NULL,
+  level TEXT NOT NULL CHECK (level IN ('debug', 'info', 'warn', 'error')),
+  type TEXT NOT NULL,
+  provider TEXT,
+  cid TEXT,
+  session_id TEXT,
+  terminal_id INTEGER,
+  feature TEXT,
+  step TEXT,
+  duration_ms INTEGER,
+  data_json TEXT NOT NULL,
+  created_at TEXT NOT NULL DEFAULT (datetime('now'))
+);
+
+CREATE INDEX IF NOT EXISTS idx_logs_timestamp ON logs(timestamp DESC);
+CREATE INDEX IF NOT EXISTS idx_logs_source ON logs(source);
+CREATE INDEX IF NOT EXISTS idx_logs_level ON logs(level);
+CREATE INDEX IF NOT EXISTS idx_logs_type ON logs(type);
+CREATE INDEX IF NOT EXISTS idx_logs_provider ON logs(provider);
+CREATE INDEX IF NOT EXISTS idx_logs_session ON logs(session_id);
+CREATE INDEX IF NOT EXISTS idx_logs_duration ON logs(duration_ms) WHERE duration_ms IS NOT NULL;
+
 -- =============================================================================
 -- PACKAGES (stacks, prompts, runtimes, binaries, agents)
 -- =============================================================================
@@ -34532,16 +34760,15 @@ CREATE TABLE IF NOT EXISTS secrets_meta (
   last_used_at TEXT
 );
 `;
-function initSchema() {
-  const db3 = getDb();
+function initSchemaWithDb(db3) {
   const hasVersionTable = db3.prepare(`
     SELECT name FROM sqlite_master WHERE type='table' AND name='schema_version'
   `).get();
   if (!hasVersionTable) {
     console.log("Initializing database schema...");
     db3.exec(SCHEMA_SQL);
+    applySchemaUpdates(db3);
     db3.prepare("INSERT INTO schema_version (version, applied_at) VALUES (?, ?)").run(SCHEMA_VERSION, (/* @__PURE__ */ new Date()).toISOString());
-    seedModelPricing(db3);
     console.log(`Database initialized at schema version ${SCHEMA_VERSION}`);
     return { version: SCHEMA_VERSION, migrated: false };
   }
@@ -34550,8 +34777,380 @@ function initSchema() {
     runMigrations(db3, currentVersion, SCHEMA_VERSION);
     return { version: SCHEMA_VERSION, migrated: true, from: currentVersion };
   }
+  db3.exec(SCHEMA_SQL);
+  applySchemaUpdates(db3);
   return { version: currentVersion, migrated: false };
 }
+function initSchema() {
+  return initSchemaWithDb(getDb());
+}
+function applySchemaUpdates(db3) {
+  if (tableExists(db3, "projects")) {
+    ensureColumn(db3, "projects", "settings", "ALTER TABLE projects ADD COLUMN settings TEXT");
+  }
+  if (tableExists(db3, "sessions")) {
+    ensureColumn(db3, "sessions", "title_override", "ALTER TABLE sessions ADD COLUMN title_override TEXT");
+    ensureColumn(db3, "sessions", "system_prompt", "ALTER TABLE sessions ADD COLUMN system_prompt TEXT");
+    ensureColumn(
+      db3,
+      "sessions",
+      "dir_scope",
+      "ALTER TABLE sessions ADD COLUMN dir_scope TEXT DEFAULT 'project' CHECK (dir_scope IN ('project', 'home'))"
+    );
+    ensureColumn(
+      db3,
+      "sessions",
+      "inherit_project_prompt",
+      "ALTER TABLE sessions ADD COLUMN inherit_project_prompt INTEGER DEFAULT 1"
+    );
+    ensureColumn(db3, "sessions", "is_warmup", "ALTER TABLE sessions ADD COLUMN is_warmup INTEGER DEFAULT 0");
+    ensureColumn(db3, "sessions", "parent_session_id", "ALTER TABLE sessions ADD COLUMN parent_session_id TEXT");
+    ensureColumn(db3, "sessions", "agent_id", "ALTER TABLE sessions ADD COLUMN agent_id TEXT");
+    ensureColumn(db3, "sessions", "is_sidechain", "ALTER TABLE sessions ADD COLUMN is_sidechain INTEGER DEFAULT 0");
+    ensureColumn(
+      db3,
+      "sessions",
+      "session_type",
+      "ALTER TABLE sessions ADD COLUMN session_type TEXT DEFAULT 'main'"
+    );
+    ensureColumn(db3, "sessions", "slug", "ALTER TABLE sessions ADD COLUMN slug TEXT");
+    ensureColumn(db3, "sessions", "version", "ALTER TABLE sessions ADD COLUMN version TEXT");
+    ensureColumn(
+      db3,
+      "sessions",
+      "user_type",
+      "ALTER TABLE sessions ADD COLUMN user_type TEXT DEFAULT 'external'"
+    );
+    if (columnExists(db3, "sessions", "session_type")) {
+      db3.exec("UPDATE sessions SET session_type = 'main' WHERE session_type = 'task'");
+    }
+    ensureIndex(db3, "idx_sessions_parent", "CREATE INDEX IF NOT EXISTS idx_sessions_parent ON sessions(parent_session_id)");
+    ensureIndex(db3, "idx_sessions_agent", "CREATE INDEX IF NOT EXISTS idx_sessions_agent ON sessions(agent_id)");
+    ensureIndex(db3, "idx_sessions_type", "CREATE INDEX IF NOT EXISTS idx_sessions_type ON sessions(session_type)");
+    if (!indexExists(db3, "idx_sessions_provider_session_unique")) {
+      dedupeProviderSessions(db3);
+      db3.exec("DROP INDEX IF EXISTS idx_sessions_provider_session");
+      db3.exec(`
+        CREATE UNIQUE INDEX IF NOT EXISTS idx_sessions_provider_session_unique
+          ON sessions(provider, provider_session_id)
+          WHERE provider_session_id IS NOT NULL AND status != 'deleted'
+      `);
+    }
+  }
+  if (tableExists(db3, "turns")) {
+    ensureColumn(db3, "turns", "provider_turn_id", "ALTER TABLE turns ADD COLUMN provider_turn_id TEXT");
+    ensureColumn(db3, "turns", "system_prompt", "ALTER TABLE turns ADD COLUMN system_prompt TEXT");
+    ensureColumn(db3, "turns", "parent_turn_id", "ALTER TABLE turns ADD COLUMN parent_turn_id TEXT");
+    ensureColumn(db3, "turns", "uuid", "ALTER TABLE turns ADD COLUMN uuid TEXT");
+    ensureColumn(db3, "turns", "service_tier", "ALTER TABLE turns ADD COLUMN service_tier TEXT");
+    ensureColumn(db3, "turns", "api_request_id", "ALTER TABLE turns ADD COLUMN api_request_id TEXT");
+    ensureColumn(db3, "turns", "tool_results", "ALTER TABLE turns ADD COLUMN tool_results TEXT");
+    ensureColumn(db3, "turns", "user_type", "ALTER TABLE turns ADD COLUMN user_type TEXT");
+    ensureColumn(db3, "turns", "is_meta", "ALTER TABLE turns ADD COLUMN is_meta INTEGER DEFAULT 0");
+    ensureColumn(db3, "turns", "display_only", "ALTER TABLE turns ADD COLUMN display_only INTEGER DEFAULT 0");
+    ensureColumn(db3, "turns", "todos", "ALTER TABLE turns ADD COLUMN todos TEXT");
+    ensureColumn(db3, "turns", "thinking_config", "ALTER TABLE turns ADD COLUMN thinking_config TEXT");
+    ensureColumn(db3, "turns", "image_ids", "ALTER TABLE turns ADD COLUMN image_ids TEXT");
+    ensureColumn(db3, "turns", "compact_metadata", "ALTER TABLE turns ADD COLUMN compact_metadata TEXT");
+    ensureColumn(db3, "turns", "logical_parent_id", "ALTER TABLE turns ADD COLUMN logical_parent_id TEXT");
+    ensureColumn(db3, "turns", "leaf_uuid", "ALTER TABLE turns ADD COLUMN leaf_uuid TEXT");
+    if (!columnExists(db3, "turns", "ts_ms")) {
+      db3.exec("ALTER TABLE turns ADD COLUMN ts_ms INTEGER");
+      db3.exec(`
+        UPDATE turns
+        SET ts_ms = CASE
+          WHEN ts GLOB '[0-9]*' AND LENGTH(ts) >= 13 THEN CAST(ts AS INTEGER)
+          WHEN ts LIKE '____-__-__T__:__:__*' THEN
+            CAST((julianday(SUBSTR(ts, 1, 19)) - julianday('1970-01-01')) * 86400000 AS INTEGER)
+          ELSE CAST((julianday(ts) - julianday('1970-01-01')) * 86400000 AS INTEGER)
+        END
+        WHERE ts_ms IS NULL AND ts IS NOT NULL
+      `);
+    }
+    if (columnExists(db3, "turns", "ts_ms")) {
+      ensureIndex(
+        db3,
+        "idx_turns_session_ts_ms",
+        "CREATE INDEX IF NOT EXISTS idx_turns_session_ts_ms ON turns(session_id, ts_ms)"
+      );
+    }
+    if (!columnExists(db3, "turns", "kind")) {
+      db3.exec("ALTER TABLE turns ADD COLUMN kind TEXT DEFAULT 'message' CHECK (kind IN ('message', 'display', 'summary', 'tool', 'error'))");
+      db3.exec(`
+        UPDATE turns SET kind = 'display'
+        WHERE user_message LIKE '[display: %]' AND assistant_response IS NULL
+      `);
+    }
+    if (columnExists(db3, "turns", "provider_turn_id")) {
+      ensureIndex(
+        db3,
+        "idx_turns_provider_dedup",
+        "CREATE UNIQUE INDEX IF NOT EXISTS idx_turns_provider_dedup ON turns(session_id, provider_turn_id) WHERE provider_turn_id IS NOT NULL"
+      );
+    }
+  }
+  ensureTable(db3, "file_positions", `
+    CREATE TABLE IF NOT EXISTS file_positions (
+      file_path TEXT PRIMARY KEY,
+      byte_offset INTEGER NOT NULL DEFAULT 0,
+      file_size INTEGER NOT NULL DEFAULT 0,
+      mtime_ms INTEGER NOT NULL DEFAULT 0,
+      inode TEXT,
+      provider TEXT NOT NULL CHECK (provider IN ('claude', 'codex', 'gemini', 'ollama')),
+      last_synced_at TEXT NOT NULL,
+      created_at TEXT NOT NULL
+    );
+  `);
+  ensureIndex(
+    db3,
+    "idx_file_positions_provider",
+    "CREATE INDEX IF NOT EXISTS idx_file_positions_provider ON file_positions(provider)"
+  );
+  ensureTable(db3, "tracked_files", `
+    CREATE TABLE IF NOT EXISTS tracked_files (
+      id TEXT PRIMARY KEY,
+      current_path TEXT NOT NULL,
+      risk_level TEXT DEFAULT 'low' CHECK (risk_level IN ('low', 'medium', 'high')),
+      created_at TEXT NOT NULL,
+      deleted_at TEXT
+    );
+  `);
+  ensureIndex(
+    db3,
+    "idx_tracked_files_path_active",
+    "CREATE UNIQUE INDEX IF NOT EXISTS idx_tracked_files_path_active ON tracked_files(current_path) WHERE deleted_at IS NULL"
+  );
+  ensureIndex(
+    db3,
+    "idx_tracked_files_path",
+    "CREATE INDEX IF NOT EXISTS idx_tracked_files_path ON tracked_files(current_path)"
+  );
+  ensureIndex(
+    db3,
+    "idx_tracked_files_active",
+    "CREATE INDEX IF NOT EXISTS idx_tracked_files_active ON tracked_files(deleted_at) WHERE deleted_at IS NULL"
+  );
+  ensureTable(db3, "file_revisions", `
+    CREATE TABLE IF NOT EXISTS file_revisions (
+      id TEXT PRIMARY KEY,
+      file_id TEXT NOT NULL,
+      revision_number INTEGER NOT NULL,
+      parent_revision_id TEXT,
+      content_hash TEXT NOT NULL,
+      size_bytes INTEGER NOT NULL,
+      kind TEXT NOT NULL CHECK (kind IN ('edit', 'revert', 'import', 'external', 'delete')),
+      author TEXT NOT NULL CHECK (author IN ('agent', 'user', 'external', 'system')),
+      summary TEXT,
+      is_binary INTEGER DEFAULT 0 CHECK (is_binary IN (0, 1)),
+      reverted_to_revision_id TEXT,
+      created_at TEXT NOT NULL,
+      path_at_revision TEXT NOT NULL,
+      FOREIGN KEY (file_id) REFERENCES tracked_files(id) ON DELETE CASCADE,
+      FOREIGN KEY (parent_revision_id) REFERENCES file_revisions(id),
+      FOREIGN KEY (reverted_to_revision_id) REFERENCES file_revisions(id)
+    );
+  `);
+  ensureIndex(
+    db3,
+    "idx_file_revisions_file",
+    "CREATE INDEX IF NOT EXISTS idx_file_revisions_file ON file_revisions(file_id, created_at DESC)"
+  );
+  ensureIndex(
+    db3,
+    "idx_file_revisions_file_rev",
+    "CREATE INDEX IF NOT EXISTS idx_file_revisions_file_rev ON file_revisions(file_id, revision_number DESC)"
+  );
+  ensureIndex(
+    db3,
+    "idx_file_revisions_hash",
+    "CREATE INDEX IF NOT EXISTS idx_file_revisions_hash ON file_revisions(content_hash)"
+  );
+  ensureIndex(
+    db3,
+    "idx_file_revisions_path",
+    "CREATE INDEX IF NOT EXISTS idx_file_revisions_path ON file_revisions(path_at_revision)"
+  );
+  ensureIndex(
+    db3,
+    "idx_file_revisions_number",
+    "CREATE UNIQUE INDEX IF NOT EXISTS idx_file_revisions_number ON file_revisions(file_id, revision_number)"
+  );
+  if (tableExists(db3, "file_revisions")) {
+    ensureColumn(
+      db3,
+      "file_revisions",
+      "is_binary",
+      "ALTER TABLE file_revisions ADD COLUMN is_binary INTEGER DEFAULT 0 CHECK (is_binary IN (0, 1))"
+    );
+  }
+  ensureTable(db3, "file_changes", `
+    CREATE TABLE IF NOT EXISTS file_changes (
+      id TEXT PRIMARY KEY,
+      session_id TEXT NOT NULL,
+      turn_id TEXT,
+      file_path TEXT NOT NULL,
+      operation TEXT NOT NULL,
+      content_before_hash TEXT,
+      content_after_hash TEXT,
+      diff_summary TEXT,
+      ts TEXT NOT NULL,
+      ts_ms INTEGER,
+      FOREIGN KEY (session_id) REFERENCES sessions(id) ON DELETE CASCADE
+    );
+  `);
+  ensureIndex(
+    db3,
+    "idx_file_changes_session",
+    "CREATE INDEX IF NOT EXISTS idx_file_changes_session ON file_changes(session_id)"
+  );
+  ensureIndex(
+    db3,
+    "idx_file_changes_path",
+    "CREATE INDEX IF NOT EXISTS idx_file_changes_path ON file_changes(file_path)"
+  );
+  ensureIndex(
+    db3,
+    "idx_file_changes_ts",
+    "CREATE INDEX IF NOT EXISTS idx_file_changes_ts ON file_changes(ts_ms)"
+  );
+  ensureTable(db3, "system_events", `
+    CREATE TABLE IF NOT EXISTS system_events (
+      id TEXT PRIMARY KEY,
+      session_id TEXT NOT NULL,
+      event_type TEXT NOT NULL,
+      payload TEXT,
+      ts TEXT NOT NULL,
+      ts_ms INTEGER,
+      FOREIGN KEY (session_id) REFERENCES sessions(id) ON DELETE CASCADE
+    );
+  `);
+  ensureIndex(
+    db3,
+    "idx_system_events_session",
+    "CREATE INDEX IF NOT EXISTS idx_system_events_session ON system_events(session_id)"
+  );
+  ensureIndex(
+    db3,
+    "idx_system_events_type",
+    "CREATE INDEX IF NOT EXISTS idx_system_events_type ON system_events(event_type)"
+  );
+  ensureTable(db3, "session_runtime_state", `
+    CREATE TABLE IF NOT EXISTS session_runtime_state (
+      session_id TEXT PRIMARY KEY,
+      status TEXT NOT NULL CHECK(status IN ('running','completed','error','stopped')),
+      provider TEXT,
+      provider_session_id TEXT,
+      started_at TEXT NOT NULL,
+      updated_at TEXT NOT NULL,
+      completed_at TEXT,
+      last_seq INTEGER NOT NULL DEFAULT 0,
+      cost_total REAL NOT NULL DEFAULT 0,
+      tokens_total INTEGER NOT NULL DEFAULT 0,
+      unseen_completion INTEGER NOT NULL DEFAULT 0,
+      last_error TEXT
+    )
+  `);
+  ensureTable(db3, "session_runtime_events", `
+    CREATE TABLE IF NOT EXISTS session_runtime_events (
+      session_id TEXT NOT NULL,
+      seq INTEGER NOT NULL,
+      type TEXT NOT NULL,
+      payload_json TEXT NOT NULL,
+      ts TEXT NOT NULL,
+      PRIMARY KEY (session_id, seq)
+    );
+  `);
+  ensureIndex(
+    db3,
+    "idx_session_runtime_events_session_ts",
+    "CREATE INDEX IF NOT EXISTS idx_session_runtime_events_session_ts ON session_runtime_events(session_id, ts)"
+  );
+  ensureTable(db3, "logs", `
+    CREATE TABLE IF NOT EXISTS logs (
+      id INTEGER PRIMARY KEY AUTOINCREMENT,
+      timestamp INTEGER NOT NULL,
+      source TEXT NOT NULL,
+      level TEXT NOT NULL CHECK (level IN ('debug', 'info', 'warn', 'error')),
+      type TEXT NOT NULL,
+      provider TEXT,
+      cid TEXT,
+      session_id TEXT,
+      terminal_id INTEGER,
+      feature TEXT,
+      step TEXT,
+      duration_ms INTEGER,
+      data_json TEXT NOT NULL,
+      created_at TEXT NOT NULL DEFAULT (datetime('now'))
+    );
+  `);
+  ensureIndex(
+    db3,
+    "idx_logs_timestamp",
+    "CREATE INDEX IF NOT EXISTS idx_logs_timestamp ON logs(timestamp DESC)"
+  );
+  ensureIndex(
+    db3,
+    "idx_logs_source",
+    "CREATE INDEX IF NOT EXISTS idx_logs_source ON logs(source)"
+  );
+  ensureIndex(
+    db3,
+    "idx_logs_level",
+    "CREATE INDEX IF NOT EXISTS idx_logs_level ON logs(level)"
+  );
+  ensureIndex(
+    db3,
+    "idx_logs_type",
+    "CREATE INDEX IF NOT EXISTS idx_logs_type ON logs(type)"
+  );
+  ensureIndex(
+    db3,
+    "idx_logs_provider",
+    "CREATE INDEX IF NOT EXISTS idx_logs_provider ON logs(provider)"
+  );
+  ensureIndex(
+    db3,
+    "idx_logs_session",
+    "CREATE INDEX IF NOT EXISTS idx_logs_session ON logs(session_id)"
+  );
+  ensureIndex(
+    db3,
+    "idx_logs_duration",
+    "CREATE INDEX IF NOT EXISTS idx_logs_duration ON logs(duration_ms) WHERE duration_ms IS NOT NULL"
+  );
+  ensureTable(db3, "model_pricing", `
+    CREATE TABLE IF NOT EXISTS model_pricing (
+      id INTEGER PRIMARY KEY AUTOINCREMENT,
+      provider TEXT NOT NULL CHECK (provider IN ('claude', 'codex', 'gemini', 'openai', 'ollama')),
+      model_pattern TEXT NOT NULL,
+      display_name TEXT,
+      input_cost_per_mtok REAL NOT NULL,
+      output_cost_per_mtok REAL NOT NULL,
+      cache_read_cost_per_mtok REAL DEFAULT 0,
+      cache_write_cost_per_mtok REAL DEFAULT 0,
+      effective_from TEXT NOT NULL,
+      effective_until TEXT,
+      notes TEXT,
+      UNIQUE(provider, model_pattern, effective_from)
+    );
+  `);
+  ensureIndex(
+    db3,
+    "idx_model_pricing_provider",
+    "CREATE INDEX IF NOT EXISTS idx_model_pricing_provider ON model_pricing(provider)"
+  );
+  ensureIndex(
+    db3,
+    "idx_model_pricing_pattern",
+    "CREATE INDEX IF NOT EXISTS idx_model_pricing_pattern ON model_pricing(model_pattern)"
+  );
+  if (tableExists(db3, "model_pricing")) {
+    const count = db3.prepare("SELECT COUNT(*) as count FROM model_pricing").get();
+    if (count && count.count === 0) {
+      seedModelPricing(db3);
+    }
+  }
+}
 function runMigrations(db3, from, to) {
   console.log(`Migrating database from v${from} to v${to}...`);
   const migrations = {
@@ -34715,17 +35314,64 @@ function runMigrations(db3, from, to) {
     },
     // Version 5: Add session metadata columns for Claude import
     5: (db4) => {
-      db4.exec(`
-        ALTER TABLE sessions ADD COLUMN dir_scope TEXT DEFAULT 'project';
-        ALTER TABLE sessions ADD COLUMN inherit_project_prompt INTEGER DEFAULT 1;
-        ALTER TABLE sessions ADD COLUMN is_warmup INTEGER DEFAULT 0;
-        ALTER TABLE sessions ADD COLUMN parent_session_id TEXT;
-        ALTER TABLE sessions ADD COLUMN agent_id TEXT;
-        ALTER TABLE sessions ADD COLUMN is_sidechain INTEGER DEFAULT 0;
-        ALTER TABLE sessions ADD COLUMN session_type TEXT DEFAULT 'task';
-        ALTER TABLE sessions ADD COLUMN version TEXT;
-        ALTER TABLE sessions ADD COLUMN user_type TEXT DEFAULT 'external';
-      `);
+      ensureColumn(
+        db4,
+        "sessions",
+        "dir_scope",
+        "ALTER TABLE sessions ADD COLUMN dir_scope TEXT DEFAULT 'project' CHECK (dir_scope IN ('project', 'home'))"
+      );
+      ensureColumn(
+        db4,
+        "sessions",
+        "inherit_project_prompt",
+        "ALTER TABLE sessions ADD COLUMN inherit_project_prompt INTEGER DEFAULT 1"
+      );
+      ensureColumn(
+        db4,
+        "sessions",
+        "is_warmup",
+        "ALTER TABLE sessions ADD COLUMN is_warmup INTEGER DEFAULT 0"
+      );
+      ensureColumn(
+        db4,
+        "sessions",
+        "parent_session_id",
+        "ALTER TABLE sessions ADD COLUMN parent_session_id TEXT"
+      );
+      ensureColumn(
+        db4,
+        "sessions",
+        "agent_id",
+        "ALTER TABLE sessions ADD COLUMN agent_id TEXT"
+      );
+      ensureColumn(
+        db4,
+        "sessions",
+        "is_sidechain",
+        "ALTER TABLE sessions ADD COLUMN is_sidechain INTEGER DEFAULT 0"
+      );
+      ensureColumn(
+        db4,
+        "sessions",
+        "session_type",
+        "ALTER TABLE sessions ADD COLUMN session_type TEXT DEFAULT 'main'"
+      );
+      ensureColumn(
+        db4,
+        "sessions",
+        "version",
+        "ALTER TABLE sessions ADD COLUMN version TEXT"
+      );
+      ensureColumn(
+        db4,
+        "sessions",
+        "user_type",
+        "ALTER TABLE sessions ADD COLUMN user_type TEXT DEFAULT 'external'"
+      );
+    },
+    // Version 6: Bring schema to Studio parity
+    6: (db4) => {
+      applySchemaUpdates(db4);
     }
   };
   for (let v2 = from + 1; v2 <= to; v2++) {
@@ -34744,6 +35390,72 @@ function runMigrations(db3, from, to) {
   }
   console.log("Migrations complete.");
 }
+function tableExists(db3, table) {
+  const result = db3.prepare(`
+    SELECT name FROM sqlite_master WHERE type='table' AND name=?
+  `).get(table);
+  return !!result;
+}
+function columnExists(db3, table, column) {
+  try {
+    const columns = db3.pragma(`table_info(${table})`);
+    return columns.some((col) => col.name === column);
+  } catch {
+    return false;
+  }
+}
+function indexExists(db3, indexName) {
+  const result = db3.prepare(`
+    SELECT name FROM sqlite_master WHERE type='index' AND name=?
+  `).get(indexName);
+  return !!result;
+}
+function ensureColumn(db3, table, column, statement) {
+  if (!columnExists(db3, table, column)) {
+    db3.exec(statement);
+  }
+}
+function ensureIndex(db3, indexName, statement) {
+  if (!indexExists(db3, indexName)) {
+    db3.exec(statement);
+  }
+}
+function ensureTable(db3, table, statement) {
+  if (!tableExists(db3, table)) {
+    db3.exec(statement);
+  }
+}
+function dedupeProviderSessions(db3) {
+  const duplicates = db3.prepare(`
+    SELECT provider, provider_session_id, COUNT(*) as cnt
+    FROM sessions
+    WHERE provider_session_id IS NOT NULL
+    GROUP BY provider, provider_session_id
+    HAVING COUNT(*) > 1
+  `).all();
+  if (!duplicates.length) {
+    return;
+  }
+  for (const dup of duplicates) {
+    const sessions = db3.prepare(`
+      SELECT id, turn_count, created_at
+      FROM sessions
+      WHERE provider = ? AND provider_session_id = ?
+      ORDER BY turn_count DESC, created_at ASC
+    `).all(dup.provider, dup.provider_session_id);
+    const keepId = sessions[0].id;
+    const deleteIds = sessions.slice(1).map((s2) => s2.id);
+    for (const id of deleteIds) {
+      db3.prepare(`
+        UPDATE sessions
+        SET status = 'deleted',
+            deleted_at = datetime('now'),
+            provider_session_id = provider_session_id || '-dup-' || id
+        WHERE id = ?
+      `).run(id);
+    }
+  }
+}
 function seedModelPricing(db3) {
   const insert = db3.prepare(`
     INSERT OR REPLACE INTO model_pricing
@@ -35978,9 +36690,9 @@ async function sessionExport(args, flags) {
   };
   const json = JSON.stringify(exportData, null, 2);
   if (flags.output || flags.o) {
-    const fs35 = await import("fs");
+    const fs34 = await import("fs");
     const outputFile = flags.output || flags.o;
-    fs35.writeFileSync(outputFile, json);
+    fs34.writeFileSync(outputFile, json);
     console.log(`\u2713 Exported session to: ${outputFile}`);
   } else {
     console.log(json);
@@ -36370,8 +37082,7 @@ Analyzing ${sessions.length} sessions...
   const projectSuggestions = [];
   const moveSuggestions = [];
   const knownProjects = {
-    "studio": "Prompt Stack Studio",
-    "prompt-stack": "Prompt Stack Studio",
+    "studio": "RUDI Studio",
     "RUDI": "RUDI",
     "rudi": "RUDI",
     "cli": "RUDI",
@@ -36459,8 +37170,8 @@ Proposed actions:`);
       console.log(`  ... and ${titleSuggestions.length - 5} more`);
     }
   }
-  const { writeFileSync: writeFileSync7 } = await import("fs");
-  writeFileSync7(outputFile, JSON.stringify(plan, null, 2));
+  const { writeFileSync: writeFileSync6 } = await import("fs");
+  writeFileSync6(outputFile, JSON.stringify(plan, null, 2));
   console.log(`
 \u2713 Plan saved to: ${outputFile}`);
   console.log("\nTo apply this plan:");
@@ -38410,281 +39121,6 @@ Wiring up RUDI router...`);
   console.log("  rudi index             # Rebuild tool cache");
 }
 
-// src/commands/migrate.js
-var fs30 = __toESM(require("fs"), 1);
-var path30 = __toESM(require("path"), 1);
-var import_os7 = __toESM(require("os"), 1);
-init_src();
-var HOME3 = import_os7.default.homedir();
-var OLD_PROMPT_STACK = path30.join(HOME3, ".prompt-stack");
-var SHIM_PATH = path30.join(PATHS.home, "shims", "rudi-mcp");
-function getOldStacks() {
-  const stacksDir = path30.join(OLD_PROMPT_STACK, "stacks");
-  if (!fs30.existsSync(stacksDir)) return [];
-  return fs30.readdirSync(stacksDir, { withFileTypes: true }).filter((d2) => d2.isDirectory() && !d2.name.startsWith(".")).filter((d2) => {
-    const hasManifest = fs30.existsSync(path30.join(stacksDir, d2.name, "manifest.json"));
-    const hasPackage = fs30.existsSync(path30.join(stacksDir, d2.name, "package.json"));
-    return hasManifest || hasPackage;
-  }).map((d2) => d2.name);
-}
-function copyStack(stackName) {
-  const oldPath = path30.join(OLD_PROMPT_STACK, "stacks", stackName);
-  const newPath = path30.join(PATHS.stacks, stackName);
-  if (!fs30.existsSync(oldPath)) {
-    return { success: false, error: "Source not found" };
-  }
-  if (fs30.existsSync(newPath)) {
-    return { success: true, skipped: true, reason: "Already exists" };
-  }
-  if (!fs30.existsSync(PATHS.stacks)) {
-    fs30.mkdirSync(PATHS.stacks, { recursive: true });
-  }
-  copyRecursive(oldPath, newPath);
-  return { success: true, copied: true };
-}
-function copyRecursive(src, dest) {
-  const stat = fs30.statSync(src);
-  if (stat.isDirectory()) {
-    fs30.mkdirSync(dest, { recursive: true });
-    for (const child of fs30.readdirSync(src)) {
-      copyRecursive(path30.join(src, child), path30.join(dest, child));
-    }
-  } else {
-    fs30.copyFileSync(src, dest);
-  }
-}
-function ensureShim() {
-  const shimsDir = path30.dirname(SHIM_PATH);
-  if (!fs30.existsSync(shimsDir)) {
-    fs30.mkdirSync(shimsDir, { recursive: true });
-  }
-  const shimContent = `#!/usr/bin/env bash
-set -euo pipefail
-if command -v rudi &> /dev/null; then
-  exec rudi mcp "$1"
-else
-  exec npx --yes @learnrudi/cli mcp "$1"
-fi
-`;
-  fs30.writeFileSync(SHIM_PATH, shimContent, { mode: 493 });
-}
-function buildNewEntry(stackName, agentId) {
-  const base = {
-    command: SHIM_PATH,
-    args: [stackName]
-  };
-  if (agentId === "claude-desktop" || agentId === "claude-code") {
-    return { type: "stdio", ...base };
-  }
-  return base;
-}
-function isOldEntry(entry) {
-  if (!entry) return false;
-  const command = entry.command || "";
-  const args = entry.args || [];
-  const cwd = entry.cwd || "";
-  return command.includes(".prompt-stack") || args.some((a2) => typeof a2 === "string" && a2.includes(".prompt-stack")) || cwd.includes(".prompt-stack");
-}
-function migrateAgentConfig(agentConfig, installedStacks, flags) {
-  const configPath = findAgentConfig(agentConfig);
-  if (!configPath) return { skipped: true, reason: "Config not found" };
-  let config;
-  try {
-    config = JSON.parse(fs30.readFileSync(configPath, "utf-8"));
-  } catch {
-    return { skipped: true, reason: "Could not parse config" };
-  }
-  const key = agentConfig.key;
-  const mcpServers = config[key] || {};
-  let updated = 0;
-  let removed = 0;
-  const changes = [];
-  for (const [name, entry] of Object.entries(mcpServers)) {
-    if (isOldEntry(entry)) {
-      if (installedStacks.includes(name)) {
-        const newEntry = buildNewEntry(name, agentConfig.id);
-        mcpServers[name] = newEntry;
-        updated++;
-        changes.push({ name, action: "updated" });
-      } else if (flags.removeOrphans) {
-        delete mcpServers[name];
-        removed++;
-        changes.push({ name, action: "removed (not installed)" });
-      } else {
-        changes.push({ name, action: "skipped (not installed in .rudi)" });
-      }
-    }
-  }
-  if (updated > 0 || removed > 0) {
-    const backupPath = configPath + ".backup." + Date.now();
-    fs30.copyFileSync(configPath, backupPath);
-    config[key] = mcpServers;
-    fs30.writeFileSync(configPath, JSON.stringify(config, null, 2));
-  }
-  return { updated, removed, changes };
-}
-async function cmdMigrate(args, flags) {
-  const subcommand = args[0];
-  if (!subcommand || subcommand === "help") {
-    console.log(`
-rudi migrate - Migrate from .prompt-stack to .rudi
-
-USAGE
-  rudi migrate status         Show what needs to be migrated
-  rudi migrate stacks         Copy stacks from .prompt-stack to .rudi
-  rudi migrate configs        Update agent configs to use new shim
-  rudi migrate all            Do everything
-
-OPTIONS
-  --remove-orphans    Remove entries for stacks not installed in .rudi
-  --dry-run           Show what would be done without making changes
-`);
-    return;
-  }
-  if (subcommand === "status") {
-    await migrateStatus();
-    return;
-  }
-  if (subcommand === "stacks") {
-    await migrateStacks(flags);
-    return;
-  }
-  if (subcommand === "configs") {
-    await migrateConfigs(flags);
-    return;
-  }
-  if (subcommand === "all") {
-    await migrateStacks(flags);
-    console.log("");
-    await migrateConfigs(flags);
-    return;
-  }
-  console.error(`Unknown subcommand: ${subcommand}`);
-  console.error("Run: rudi migrate help");
-}
-async function migrateStatus() {
-  console.log("\n=== Migration Status ===\n");
-  const oldStacks = getOldStacks();
-  console.log(`Old .prompt-stack stacks: ${oldStacks.length}`);
-  if (oldStacks.length > 0) {
-    for (const name of oldStacks) {
-      const existsInRudi = fs30.existsSync(path30.join(PATHS.stacks, name));
-      const status = existsInRudi ? "\u2713 (already in .rudi)" : "\u25CB (needs migration)";
-      console.log(`  ${status} ${name}`);
-    }
-  }
-  const newStacksDir = PATHS.stacks;
-  let newStacks = [];
-  if (fs30.existsSync(newStacksDir)) {
-    newStacks = fs30.readdirSync(newStacksDir, { withFileTypes: true }).filter((d2) => d2.isDirectory() && !d2.name.startsWith(".")).map((d2) => d2.name);
-  }
-  console.log(`
-New .rudi stacks: ${newStacks.length}`);
-  if (newStacks.length > 0) {
-    for (const name of newStacks) {
-      console.log(`  \u2713 ${name}`);
-    }
-  }
-  console.log("\n=== Agent Configs ===\n");
-  for (const agentConfig of AGENT_CONFIGS) {
-    const configPath = findAgentConfig(agentConfig);
-    if (!configPath) continue;
-    let config;
-    try {
-      config = JSON.parse(fs30.readFileSync(configPath, "utf-8"));
-    } catch {
-      continue;
-    }
-    const mcpServers = config[agentConfig.key] || {};
-    const entries = Object.entries(mcpServers);
-    const oldEntries = entries.filter(([_2, e2]) => isOldEntry(e2));
-    const newEntries = entries.filter(([_2, e2]) => !isOldEntry(e2));
-    if (entries.length === 0) continue;
-    console.log(`${agentConfig.name}:`);
-    console.log(`  Config: ${configPath}`);
-    console.log(`  Old entries: ${oldEntries.length}`);
-    console.log(`  New entries: ${newEntries.length}`);
-    if (oldEntries.length > 0) {
-      console.log("  Needs update:");
-      for (const [name] of oldEntries) {
-        const installed = newStacks.includes(name);
-        const status = installed ? "(ready)" : "(not in .rudi)";
-        console.log(`    - ${name} ${status}`);
-      }
-    }
-    console.log("");
-  }
-  console.log("Run: rudi migrate all");
-}
-async function migrateStacks(flags) {
-  console.log("=== Migrating Stacks ===\n");
-  const oldStacks = getOldStacks();
-  if (oldStacks.length === 0) {
-    console.log("No stacks found in .prompt-stack");
-    return;
-  }
-  console.log(`Found ${oldStacks.length} stack(s) in .prompt-stack
-`);
-  for (const name of oldStacks) {
-    if (flags.dryRun) {
-      const exists = fs30.existsSync(path30.join(PATHS.stacks, name));
-      console.log(`  [dry-run] ${name}: ${exists ? "would skip (exists)" : "would copy"}`);
-    } else {
-      const result = copyStack(name);
-      if (result.skipped) {
-        console.log(`  \u25CB ${name}: skipped (${result.reason})`);
-      } else if (result.copied) {
-        console.log(`  \u2713 ${name}: copied to .rudi/stacks/`);
-      } else {
-        console.log(`  \u2717 ${name}: ${result.error}`);
-      }
-    }
-  }
-  if (!flags.dryRun) {
-    console.log(`
-Stacks migrated to: ${PATHS.stacks}`);
-  }
-}
-async function migrateConfigs(flags) {
-  console.log("=== Updating Agent Configs ===\n");
-  if (!flags.dryRun) {
-    ensureShim();
-    console.log(`Shim ready: ${SHIM_PATH}
-`);
-  }
-  let installedStacks = [];
-  if (fs30.existsSync(PATHS.stacks)) {
-    installedStacks = fs30.readdirSync(PATHS.stacks, { withFileTypes: true }).filter((d2) => d2.isDirectory() && !d2.name.startsWith(".")).map((d2) => d2.name);
-  }
-  for (const agentConfig of AGENT_CONFIGS) {
-    const configPath = findAgentConfig(agentConfig);
-    if (!configPath) continue;
-    if (flags.dryRun) {
-      console.log(`${agentConfig.name}:`);
-      console.log(`  [dry-run] Would update entries using .prompt-stack paths`);
-      continue;
-    }
-    const result = migrateAgentConfig(agentConfig, installedStacks, flags);
-    if (result.skipped) {
-      continue;
-    }
-    console.log(`${agentConfig.name}:`);
-    console.log(`  Config: ${configPath}`);
-    if (result.changes && result.changes.length > 0) {
-      for (const change of result.changes) {
-        console.log(`    ${change.action}: ${change.name}`);
-      }
-    }
-    if (result.updated > 0 || result.removed > 0) {
-      console.log(`  Updated: ${result.updated}, Removed: ${result.removed}`);
-    } else {
-      console.log(`  No changes needed`);
-    }
-    console.log("");
-  }
-  console.log("Restart your agents to use the updated configs.");
-}
-
 // src/commands/index-tools.js
 init_src4();
 init_src4();
@@ -38824,7 +39260,7 @@ init_src4();
 var import_child_process11 = require("child_process");
 var import_fs24 = __toESM(require("fs"), 1);
 var import_path22 = __toESM(require("path"), 1);
-var import_os8 = __toESM(require("os"), 1);
+var import_os7 = __toESM(require("os"), 1);
 var AGENTS = [
   {
     id: "claude",
@@ -38869,7 +39305,7 @@ var BINARIES = [
   { id: "jq", name: "jq", command: "jq", versionFlag: "--version" }
 ];
 function fileExists(filePath) {
-  const resolved = filePath.replace("~", import_os8.default.homedir());
+  const resolved = filePath.replace("~", import_os7.default.homedir());
   return import_fs24.default.existsSync(resolved);
 }
 function checkKeychain(service) {
@@ -39120,7 +39556,7 @@ init_src4();
 var import_child_process12 = require("child_process");
 var import_fs25 = __toESM(require("fs"), 1);
 var import_path23 = __toESM(require("path"), 1);
-var import_os9 = __toESM(require("os"), 1);
+var import_os8 = __toESM(require("os"), 1);
 var AGENT_CREDENTIALS = {
   claude: { type: "keychain", service: "Claude Code-credentials" },
   codex: { type: "file", path: "~/.codex/auth.json" },
@@ -39128,7 +39564,7 @@ var AGENT_CREDENTIALS = {
   copilot: { type: "file", path: "~/.config/github-copilot/hosts.json" }
 };
 function fileExists2(filePath) {
-  const resolved = filePath.replace("~", import_os9.default.homedir());
+  const resolved = filePath.replace("~", import_os8.default.homedir());
   return import_fs25.default.existsSync(resolved);
 }
 function checkKeychain2(service) {
@@ -39637,7 +40073,7 @@ Lockfile: ${lockPath}`);
 // src/commands/apply.js
 var import_fs28 = require("fs");
 var import_path26 = require("path");
-var import_os10 = require("os");
+var import_os9 = require("os");
 var import_crypto3 = require("crypto");
 async function cmdApply(args, flags) {
   const planFile = args[0];
@@ -39820,10 +40256,10 @@ Applying plan ${planId}...
     }
     console.log(`  \u2713 Updated ${updated} titles`);
   }
-  const undoDir = (0, import_path26.join)((0, import_os10.homedir)(), ".rudi", "plans");
-  const { mkdirSync: mkdirSync5 } = await import("fs");
+  const undoDir = (0, import_path26.join)((0, import_os9.homedir)(), ".rudi", "plans");
+  const { mkdirSync: mkdirSync4 } = await import("fs");
   try {
-    mkdirSync5(undoDir, { recursive: true });
+    mkdirSync4(undoDir, { recursive: true });
   } catch (e2) {
   }
   const undoFile = (0, import_path26.join)(undoDir, `${planId}.undo.json`);
@@ -40087,9 +40523,6 @@ async function main() {
       case "integrate":
         await cmdIntegrate(args, flags);
         break;
-      case "migrate":
-        await cmdMigrate(args, flags);
-        break;
       case "index":
         await cmdIndex(args, flags);
         break;