@leanlabsinnov/codegraph 0.1.5 → 0.1.7

package/dist/chunk-KYPDPBI5.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/config-store.ts","../src/ui.ts","../src/program.ts","../src/commands/config.ts","../src/commands/doctor.ts","../src/ollama.ts","../src/commands/index.ts","../../ingestion/src/parser.ts","../../ingestion/src/extractors/extract.ts","../../ingestion/src/walker.ts","../../ingestion/src/extractors/extract-python.ts","../../ingestion/src/extractors/routes.ts","../../ingestion/src/extractors/resolve.ts","../../ingestion/src/orchestrator.ts","../../ingestion/src/embedder.ts","../../ingestion/src/tsconfig.ts","../../ingestion/src/repo-walker.ts","../src/repo-id.ts","../src/commands/init.ts","../../mcp-server/src/bootstrap.ts","../../mcp-server/src/cache.ts","../../mcp-server/src/config.ts","../../mcp-server/src/server.ts","../../mcp-server/src/tools/affected-by.ts","../../mcp-server/src/tools/util.ts","../../mcp-server/src/tools/blast-radius.ts","../../mcp-server/src/tools/find-callers.ts","../../mcp-server/src/tools/find-file.ts","../../mcp-server/src/tools/get-component-tree.ts","../../mcp-server/src/tools/get-dependencies.ts","../../mcp-server/src/tools/get-file-context.ts","../../mcp-server/src/tools/nl-query.ts","../../mcp-server/src/cypher-guard.ts","../../mcp-server/src/tools/search-semantic.ts","../../mcp-server/src/tools/search-symbol.ts","../../mcp-server/src/tools/index.ts","../../mcp-server/src/viewer-routes.ts","../../mcp-server/src/logger.ts","../src/commands/serve.ts","../src/commands/view.ts"],"sourcesContent":["import { mkdir, readFile, writeFile } from \"node:fs/promises\";\nimport os from \"node:os\";\nimport path from \"node:path\";\nimport { type CodegraphConfig, DEFAULT_CONFIG } from \"@codegraph/shared\";\n\nconst CONFIG_DIR = path.join(os.homedir(), \".codegraph\");\nconst CONFIG_FILE = path.join(CONFIG_DIR, \"config.json\");\n\nexport function configPath(): string {\n  return CONFIG_FILE;\n}\n\nexport async function loadConfig(): Promise<CodegraphConfig> {\n  try {\n    const raw = await readFile(CONFIG_FILE, \"utf8\");\n    const parsed = JSON.parse(raw) as Partial<CodegraphConfig>;\n    return mergeConfig(DEFAULT_CONFIG, parsed);\n  } catch (err) {\n    if ((err as NodeJS.ErrnoException).code === \"ENOENT\") {\n      return DEFAULT_CONFIG;\n    }\n    throw err;\n  }\n}\n\nexport async function saveConfig(config: CodegraphConfig): Promise<void> {\n  await mkdir(CONFIG_DIR, { recursive: true });\n  await writeFile(CONFIG_FILE, `${JSON.stringify(config, null, 2)}\\n`, \"utf8\");\n}\n\nfunction mergeConfig(base: CodegraphConfig, override: Partial<CodegraphConfig>): CodegraphConfig {\n  return {\n    llm: {\n      ...base.llm,\n      ...(override.llm ?? {}),\n      generation: { ...base.llm.generation, ...(override.llm?.generation ?? {}) },\n      embeddings: { ...base.llm.embeddings, ...(override.llm?.embeddings ?? {}) },\n    },\n    server: { ...base.server, ...(override.server ?? {}) },\n    data: { ...base.data, ...(override.data ?? {}) },\n  };\n}\n","import boxen from \"boxen\";\nimport Table from \"cli-table3\";\nimport kleur from \"kleur\";\nimport ora, { type Ora } from \"ora\";\n\n/**\n * Shared terminal-UI helpers used by every CLI command. Keeping them in one place means\n * the look-and-feel stays consistent and tests can replace them with no-ops if needed.\n */\n\n/** ASCII wordmark printed by the banner box. Roman font, stripped of trailing whitespace. */\nconst ASCII_LOGO = `   ___          _        ___                 _\n  / __\\\\___   __| | ___  / _ \\\\_ __ __ _ _ __ | |__\n / /  / _ \\\\ / _\\` |/ _ \\\\/ /_\\\\/ '__/ _\\` | '_ \\\\| '_ \\\\\n/ /__| (_) | (_| |  __/ /_\\\\\\\\| | | (_| | |_) | | | |\n\\\\____/\\\\___/ \\\\__,_|\\\\___\\\\____/|_|  \\\\__,_| .__/|_| |_|\n                                      |_|`;\n\nconst TAGLINE = \"Live, queryable knowledge graph for your codebase.\";\n\n/** First-run / --help banner. Quiet in non-TTY contexts so it doesn't pollute pipes. */\nexport function printBanner(): void {\n  if (!process.stdout.isTTY) return;\n  const body = `${kleur.cyan(ASCII_LOGO)}\\n\\n${kleur.dim(TAGLINE)}`;\n  process.stdout.write(\n    `${boxen(body, {\n      padding: { top: 0, bottom: 0, left: 2, right: 2 },\n      margin: { top: 0, bottom: 1, left: 0, right: 0 },\n      borderStyle: \"round\",\n      borderColor: \"cyan\",\n      title: kleur.bold(\"codegraph\"),\n      titleAlignment: \"left\",\n    })}\\n`,\n  );\n}\n\n/**\n * Create an `ora` spinner that disables itself when not on a TTY (so CI logs stay clean)\n * and renders consistent prefix-text formatting.\n */\nexport function makeSpinner(text: string): Ora {\n  return ora({\n    text,\n    color: \"cyan\",\n    spinner: \"dots\",\n    isEnabled: process.stdout.isTTY === true,\n  });\n}\n\n/**\n * Minimal text-mode progress bar. Re-renders in place on the same line; falls back to a\n * dim per-step line in non-TTY contexts (CI logs).\n */\nexport class ProgressBar {\n  private lastRender = 0;\n  private readonly width: number;\n  constructor(\n    private readonly label: string,\n    private readonly total: number,\n    width = 28,\n  ) {\n    this.width = width;\n  }\n\n  update(current: number): void {\n    if (this.total <= 0) return;\n    if (process.stdout.isTTY !== true) {\n      // Non-TTY: print every 25th step so logs stay short but show progress.\n      if (current === this.total || current - this.lastRender >= 25) {\n        process.stdout.write(`${kleur.dim(`${this.label}: ${current}/${this.total}`)}\\n`);\n        this.lastRender = current;\n      }\n      return;\n    }\n    const ratio = Math.min(1, current / this.total);\n    const filled = Math.round(ratio * this.width);\n    const bar = `${\"█\".repeat(filled)}${\"░\".repeat(this.width - filled)}`;\n    const pct = `${(ratio * 100).toFixed(0).padStart(3)}%`;\n    process.stdout.write(\n      `\\r${kleur.cyan(this.label.padEnd(10))} ${kleur.cyan(bar)} ${pct}  ${current}/${this.total}`,\n    );\n    if (current >= this.total) process.stdout.write(\"\\n\");\n  }\n\n  done(): void {\n    this.update(this.total);\n  }\n}\n\n/** Render the `codegraph status` output as two compact tables plus a coverage line. */\nexport function renderStatusTables(\n  repoId: string,\n  stats: { nodes: Record<string, number>; edges: Record<string, number>; embeddingCoverage: number },\n): string {\n  const nodeTable = new Table({\n    head: [kleur.bold(\"Node kind\"), kleur.bold(\"Count\")],\n    colAligns: [\"left\", \"right\"],\n    style: { head: [], border: [\"grey\"] },\n  });\n  for (const [kind, count] of Object.entries(stats.nodes)) {\n    nodeTable.push([kind, count]);\n  }\n  const edgeTable = new Table({\n    head: [kleur.bold(\"Edge kind\"), kleur.bold(\"Count\")],\n    colAligns: [\"left\", \"right\"],\n    style: { head: [], border: [\"grey\"] },\n  });\n  for (const [kind, count] of Object.entries(stats.edges)) {\n    edgeTable.push([kind, count]);\n  }\n  const coverage = `${kleur.bold(\"Embedding coverage:\")} ${kleur.cyan(\n    `${(stats.embeddingCoverage * 100).toFixed(1)}%`,\n  )}`;\n  return [kleur.bold(`Status for ${repoId}`), \"\", nodeTable.toString(), edgeTable.toString(), coverage].join(\"\\n\");\n}\n\n/** Render a pretty error block. Used by the top-level bin.ts catch. */\nexport function renderError(err: unknown, opts: { verbose: boolean } = { verbose: false }): string {\n  const message = err instanceof Error ? err.message : String(err);\n  const hint = friendlyHint(message);\n  const lines = [kleur.red().bold(\"✗ codegraph hit an error\"), \"\", kleur.red(message)];\n  if (hint) {\n    lines.push(\"\", kleur.yellow(\"hint: \"), kleur.yellow(hint));\n  }\n  if (opts.verbose && err instanceof Error && err.stack) {\n    lines.push(\"\", kleur.dim(err.stack));\n  } else if (err instanceof Error) {\n    lines.push(\"\", kleur.dim(\"(re-run with --verbose for a full stack trace)\"));\n  }\n  return boxen(lines.join(\"\\n\"), {\n    padding: 1,\n    borderColor: \"red\",\n    borderStyle: \"round\",\n  });\n}\n\n/**\n * Map common error messages to specific, actionable hints. Keeps support load down by\n * answering the most common Slack pings inline.\n */\nfunction friendlyHint(message: string): string | null {\n  if (/OPENAI_API_KEY/i.test(message) || /api key/i.test(message)) {\n    return \"Set OPENAI_API_KEY in your shell (or switch to local-ollama with `codegraph config llm set local-ollama`).\";\n  }\n  if (/ANTHROPIC_API_KEY/i.test(message)) {\n    return \"Set ANTHROPIC_API_KEY, or switch presets via `codegraph config llm set <preset>`.\";\n  }\n  if (/GOOGLE_GENERATIVE_AI_API_KEY/i.test(message)) {\n    return \"Set GOOGLE_GENERATIVE_AI_API_KEY, or switch presets via `codegraph config llm set <preset>`.\";\n  }\n  if (/ECONNREFUSED/.test(message) && /11434/.test(message)) {\n    return \"Ollama isn't running on :11434. Start it with `ollama serve`, or switch to a hosted provider.\";\n  }\n  if (/EACCES|permission denied/i.test(message)) {\n    return \"Codegraph stores data in ~/.codegraph. Check that the directory is writable.\";\n  }\n  if (/database is locked/i.test(message) || /Lock file/i.test(message)) {\n    return \"Another `codegraph` process holds the Kuzu DB. Stop it (or remove ~/.codegraph/graph/.lock) before retrying.\";\n  }\n  if (/Unknown preset/i.test(message)) {\n    return \"Run `codegraph config llm set` with no args for an interactive prompt.\";\n  }\n  return null;\n}\n\n/** Highlighted success banner for the serve command. */\nexport function renderServeBanner(url: string, tokenHint: string, viewerUrl?: string): string {\n  const lines = [\n    `${kleur.green(\"✓\")} codegraph mcp listening on ${kleur.cyan(url)}`,\n  ];\n  if (viewerUrl) {\n    lines.push(`${kleur.green(\"✓\")} graph viewer on          ${kleur.cyan(viewerUrl)}`);\n  }\n  lines.push(\"\", kleur.dim(tokenHint), kleur.dim(\"Ctrl-C to stop.\"));\n  return boxen(lines.join(\"\\n\"), {\n    padding: { top: 0, bottom: 0, left: 2, right: 2 },\n    margin: { top: 1, bottom: 1, left: 0, right: 0 },\n    borderColor: \"green\",\n    borderStyle: \"round\",\n  });\n}\n","import { Command } from \"commander\";\nimport { runConfigLlmSet, runConfigLlmTest, runConfigShow } from \"./commands/config.js\";\nimport { runDoctorCommand } from \"./commands/doctor.js\";\nimport { runIndexCommand, runStatusCommand, runWipeCommand } from \"./commands/index.js\";\nimport { runInitCommand } from \"./commands/init.js\";\nimport { runServeCommand } from \"./commands/serve.js\";\nimport { runViewCommand } from \"./commands/view.js\";\nimport { printBanner } from \"./ui.js\";\n\nexport function buildProgram(): Command {\n  const program = new Command();\n  program\n    .name(\"codegraph\")\n    .description(\"Live, queryable knowledge graph for your codebase\")\n    .version(\"0.1.3\")\n    .option(\"--verbose\", \"Print full stack traces on error\")\n    .hook(\"preAction\", (thisCommand) => {\n      // Promote `--verbose` to an env var so the top-level error handler in bin.ts can\n      // pick it up without threading it through every command.\n      const opts = thisCommand.optsWithGlobals();\n      if (opts.verbose) process.env.CODEGRAPH_VERBOSE = \"1\";\n    });\n\n  // Print the banner on bare `codegraph` (no subcommand) and on `--help`.\n  program.on(\"--help\", () => {\n    printBanner();\n  });\n\n  program\n    .command(\"init\")\n    .description(\"Interactive setup wizard — LLM, credentials, index, MCP, client connect\")\n    .action(async () => {\n      await runInitCommand();\n    });\n\n  program\n    .command(\"index\")\n    .description(\"Parse a JS/TS repo into the local embedded graph\")\n    .argument(\"<path>\", \"Path to the repo root\")\n    .option(\"--no-embed\", \"Skip the embedding pass (faster, no LLM calls)\")\n    .action(async (repoPath: string, opts: { embed?: boolean }) => {\n      await runIndexCommand({ repoPath, noEmbed: opts.embed === false });\n    });\n\n  program\n    .command(\"status\")\n    .description(\"Show node/edge counts and embedding coverage for a repo\")\n    .argument(\"<path>\", \"Path to the repo root\")\n    .action(async (repoPath: string) => {\n      await runStatusCommand({ repoPath });\n    });\n\n  program\n    .command(\"serve\")\n    .description(\"Boot the local MCP server (default port 3748)\")\n    .option(\"--port <port>\", \"TCP port to bind\", (v) => Number(v))\n    .option(\"--host <host>\", \"Host to bind (default 127.0.0.1)\")\n    .option(\"--db-path <path>\", \"Override the embedded Kuzu graph directory\")\n    .action(async (opts: { port?: number; host?: string; dbPath?: string }) => {\n      await runServeCommand({\n        ...(opts.port !== undefined ? { port: opts.port } : {}),\n        ...(opts.host !== undefined ? { host: opts.host } : {}),\n        ...(opts.dbPath !== undefined ? { dbPath: opts.dbPath } : {}),\n      });\n    });\n\n  program\n    .command(\"view\")\n    .description(\"Open the graph viewer in the browser (requires codegraph serve to be running)\")\n    .option(\"--port <port>\", \"MCP server port to check (default 3748)\", (v) => Number(v))\n    .option(\"--host <host>\", \"MCP server host (default 127.0.0.1)\")\n    .action(async (opts: { port?: number; host?: string }) => {\n      await runViewCommand({\n        ...(opts.port !== undefined ? { port: opts.port } : {}),\n        ...(opts.host !== undefined ? { host: opts.host } : {}),\n      });\n    });\n\n  program\n    .command(\"doctor\")\n    .description(\"Check environment, config, LLM credentials, and Kuzu DB health\")\n    .action(async () => {\n      await runDoctorCommand();\n    });\n\n  program\n    .command(\"wipe\")\n    .description(\"Delete a single repo's slice (with [path]) or the entire on-disk graph\")\n    .argument(\"[path]\", \"Repo path. Omit to wipe the whole graph directory.\")\n    .option(\"--yes\", \"Skip the confirmation prompt\", false)\n    .action(async (repoPath: string | undefined, opts: { yes?: boolean }) => {\n      await runWipeCommand({\n        ...(repoPath ? { repoPath } : {}),\n        yes: opts.yes === true,\n      });\n    });\n\n  const configCmd = program.command(\"config\").description(\"Manage ~/.codegraph/config.json\");\n  configCmd\n    .command(\"show\")\n    .description(\"Print the resolved config\")\n    .action(async () => {\n      await runConfigShow();\n    });\n  const llmCmd = configCmd.command(\"llm\").description(\"Configure the LLM router\");\n  llmCmd\n    .command(\"set [preset]\")\n    .description(\n      \"Set LLM preset: managed-stub | byo-openai | byo-anthropic | byo-google | local-ollama. Omit the preset to pick interactively.\",\n    )\n    .action(async (preset?: string) => {\n      await runConfigLlmSet(preset);\n    });\n  llmCmd\n    .command(\"test\")\n    .description(\"Run a 5-token generation + 1 embedding call against the current config\")\n    .action(async () => {\n      await runConfigLlmTest();\n    });\n\n  return program;\n}\n","import { input, password, select } from \"@inquirer/prompts\";\nimport { createLlmRouter, namespaceLabel } from \"@codegraph/llm-router\";\nimport { LLM_PRESETS } from \"@codegraph/shared\";\nimport kleur from \"kleur\";\nimport { configPath, loadConfig, saveConfig } from \"../config-store.js\";\nimport { makeSpinner } from \"../ui.js\";\n\nexport async function runConfigShow(): Promise<void> {\n  const config = await loadConfig();\n  console.log(kleur.dim(`config file: ${configPath()}`));\n  console.log(JSON.stringify(config, null, 2));\n}\n\n/**\n * If called with a preset arg, applies it non-interactively. Otherwise launches an\n * interactive picker (preset + optional API key) - this is the path the first-run\n * onboarding takes.\n */\nexport async function runConfigLlmSet(presetArg?: string): Promise<void> {\n  const presetKeys = Object.keys(LLM_PRESETS);\n  let preset = presetArg;\n  if (!preset) {\n    preset = await select({\n      message: \"Which LLM preset?\",\n      choices: presetKeys.map((id) => ({\n        name: id,\n        value: id,\n        description: describePreset(id),\n      })),\n    });\n  }\n  const lookup = LLM_PRESETS[preset];\n  if (!lookup) {\n    throw new Error(`Unknown preset \"${preset}\". Available: ${presetKeys.join(\", \")}`);\n  }\n  const config = await loadConfig();\n  config.llm = { ...config.llm, ...lookup };\n  // Clear any previously saved custom base URL when switching to a non-custom preset\n  if (preset !== \"local-openai-compatible\") {\n    config.llm.baseUrl = undefined;\n  }\n\n  if (!presetArg && preset === \"local-openai-compatible\") {\n    const url = await promptBaseUrl();\n    if (url) config.llm.baseUrl = url;\n  }\n\n  await saveConfig(config);\n  console.log(kleur.green(`✓ saved preset \"${preset}\" to ${configPath()}`));\n  console.log(kleur.dim(`embedding namespace: ${namespaceLabel(config.llm)}`));\n\n  if (!presetArg && preset !== \"local-openai-compatible\") {\n    await maybePromptForApiKey(preset);\n  }\n}\n\n/**\n * Best-effort prompt for the API key the chosen preset needs. We persist it via a stdout\n * hint rather than writing it to disk - shell history / env vars are still the right place\n * for secrets.\n */\nasync function maybePromptForApiKey(preset: string): Promise<void> {\n  const envVar = apiKeyEnvVarFor(preset);\n  if (!envVar) return;\n  if (process.env[envVar]) {\n    console.log(kleur.dim(`✓ ${envVar} already set in environment`));\n    return;\n  }\n  const provideNow = await select({\n    message: `${envVar} is not set. Provide it now?`,\n    choices: [\n      { name: \"Yes (paste; I'll print the export line)\", value: \"yes\" },\n      { name: \"No, I'll set it later\", value: \"no\" },\n    ],\n  });\n  if (provideNow !== \"yes\") {\n    console.log(\n      kleur.yellow(`! Set ${envVar} in your shell before running \\`codegraph index\\``),\n    );\n    return;\n  }\n  const value = await password({ message: `${envVar} value (input hidden)`, mask: \"*\" });\n  if (!value) return;\n  console.log(kleur.dim(\"Add this to your ~/.zshrc or ~/.bashrc:\"));\n  console.log(kleur.cyan(`  export ${envVar}=${value}`));\n}\n\nfunction apiKeyEnvVarFor(preset: string): string | null {\n  if (preset === \"byo-openai\" || preset === \"managed-stub\") return \"OPENAI_API_KEY\";\n  if (preset === \"byo-anthropic\") return \"ANTHROPIC_API_KEY\";\n  if (preset === \"byo-google\") return \"GOOGLE_GENERATIVE_AI_API_KEY\";\n  return null; // local-ollama and local-openai-compatible need no API key\n}\n\nfunction describePreset(id: string): string {\n  switch (id) {\n    case \"managed-stub\":\n      return \"Phase-2 placeholder - same as BYO OpenAI\";\n    case \"byo-openai\":\n      return \"Your own OpenAI key (gpt-4o-mini + text-embedding-3-small)\";\n    case \"byo-anthropic\":\n      return \"Anthropic for gen, OpenAI for embeddings\";\n    case \"byo-google\":\n      return \"Gemini for gen + Google embeddings\";\n    case \"local-ollama\":\n      return \"Fully local via Ollama (qwen2.5-coder:1.5b + nomic-embed-text)\";\n    case \"local-openai-compatible\":\n      return \"Any OpenAI-compatible server (llama.cpp, LM Studio, vLLM) — you supply the URL\";\n    default:\n      return \"\";\n  }\n}\n\n/**\n * Prompt for the base URL needed by the local-openai-compatible preset.\n * Returns the trimmed URL, or an empty string if the user skips.\n */\nasync function promptBaseUrl(): Promise<string> {\n  const url = await input({\n    message: \"Server base URL (e.g. http://localhost:8080/v1):\",\n    validate: (v) =>\n      v.trim() === \"\" || v.trim().startsWith(\"http\")\n        ? true\n        : \"Must be an http(s) URL (or leave empty to set later)\",\n  });\n  const trimmed = url.trim();\n  if (!trimmed) {\n    console.log(\n      kleur.yellow(\n        \"! No URL saved. Edit ~/.codegraph/config.json to set llm.baseUrl before indexing.\",\n      ),\n    );\n  }\n  return trimmed;\n}\n\nexport async function runConfigLlmTest(): Promise<void> {\n  const config = await loadConfig();\n  console.log(kleur.dim(\"testing llm config:\"));\n  console.log(kleur.dim(`  mode      ${config.llm.mode}`));\n  console.log(\n    kleur.dim(`  generate  ${config.llm.generation.provider}:${config.llm.generation.model}`),\n  );\n  console.log(\n    kleur.dim(`  embed     ${config.llm.embeddings.provider}:${config.llm.embeddings.model}`),\n  );\n  const spinner = makeSpinner(\"Calling provider\").start();\n  try {\n    const router = await createLlmRouter({ config: config.llm });\n    const result = await router.selfTest();\n    spinner.succeed(\"LLM provider reachable\");\n    console.log(`  embed dims:        ${result.embedDims}`);\n    console.log(`  embed latency:     ${result.embedLatencyMs}ms`);\n    console.log(`  generate latency:  ${result.generateLatencyMs}ms`);\n    console.log(`  namespace:         ${namespaceLabel(config.llm)}`);\n  } catch (err) {\n    spinner.fail(\"LLM provider unreachable\");\n    throw err;\n  }\n}\n","import { access, constants, mkdir } from \"node:fs/promises\";\nimport { dirname } from \"node:path\";\nimport { defaultDbPath, GraphDb } from \"@codegraph/graph-db\";\nimport { createLlmRouter } from \"@codegraph/llm-router\";\nimport kleur from \"kleur\";\nimport { configPath, loadConfig } from \"../config-store.js\";\nimport { detectOllama, LOCAL_MODELS } from \"../ollama.js\";\n\ninterface Check {\n  name: string;\n  status: \"ok\" | \"warn\" | \"fail\";\n  detail: string;\n}\n\n/**\n * `codegraph doctor` is a one-shot health check: Node version, config presence, LLM\n * provider credentials, Kuzu DB path writability, plus a tiny self-test against the\n * configured LLM. Designed to be the first thing we ask new users to run when they hit\n * a problem - it should print enough context to triage almost anything in support.\n */\nexport async function runDoctorCommand(): Promise<void> {\n  const checks: Check[] = [];\n  checks.push(checkNodeVersion());\n\n  let config: Awaited<ReturnType<typeof loadConfig>> | null = null;\n  try {\n    config = await loadConfig();\n    checks.push({ name: \"config file\", status: \"ok\", detail: configPath() });\n  } catch (err) {\n    checks.push({\n      name: \"config file\",\n      status: \"fail\",\n      detail: err instanceof Error ? err.message : String(err),\n    });\n  }\n\n  const dbPath = config?.data.dbPath ?? defaultDbPath();\n  checks.push(await checkWritable(\"graph dir\", dbPath));\n\n  if (config) {\n    checks.push(checkApiKey(config.llm.generation.provider));\n    if (config.llm.embeddings.provider !== config.llm.generation.provider) {\n      checks.push(checkApiKey(config.llm.embeddings.provider));\n    }\n  }\n\n  // Proactive Ollama daemon check — surfaces a clear actionable message before the\n  // generic LLM round-trip so users see \"ollama not running\" rather than ECONNREFUSED.\n  if (config && config.llm.generation.provider === \"ollama\") {\n    checks.push(await checkOllamaDaemon());\n  }\n\n  if (config) {\n    checks.push(await selfTestLlm(config));\n    checks.push(await selfTestKuzu(dbPath, config.llm.embeddings.dimension));\n  }\n\n  let failed = 0;\n  let warned = 0;\n  for (const c of checks) {\n    const icon =\n      c.status === \"ok\" ? kleur.green(\"✓\") : c.status === \"warn\" ? kleur.yellow(\"!\") : kleur.red(\"✗\");\n    const name = c.name.padEnd(18);\n    const detail = c.status === \"ok\" ? kleur.dim(c.detail) : c.detail;\n    console.log(`${icon}  ${name} ${detail}`);\n    if (c.status === \"fail\") failed++;\n    if (c.status === \"warn\") warned++;\n  }\n  console.log();\n  if (failed > 0) {\n    console.log(kleur.red().bold(`${failed} check(s) failed; codegraph won't work as-is.`));\n    process.exitCode = 1;\n    return;\n  }\n  if (warned > 0) {\n    console.log(kleur.yellow(`${warned} warning(s); core flows work, optional features may not.`));\n    return;\n  }\n  console.log(kleur.green().bold(\"All checks passed. You're ready to `codegraph index <repo>`.\"));\n}\n\nfunction checkNodeVersion(): Check {\n  const version = process.versions.node;\n  const major = Number(version.split(\".\")[0] ?? 0);\n  if (major >= 20) {\n    return { name: \"node version\", status: \"ok\", detail: `v${version}` };\n  }\n  return {\n    name: \"node version\",\n    status: \"fail\",\n    detail: `v${version} (codegraph requires >= 20)`,\n  };\n}\n\nasync function checkWritable(name: string, path: string): Promise<Check> {\n  try {\n    await mkdir(dirname(path), { recursive: true });\n    try {\n      await access(path, constants.W_OK);\n    } catch {\n      // Doesn't exist yet - that's fine as long as the parent is writable.\n      await access(dirname(path), constants.W_OK);\n    }\n    return { name, status: \"ok\", detail: path };\n  } catch (err) {\n    return {\n      name,\n      status: \"fail\",\n      detail: `${path} (${err instanceof Error ? err.message : String(err)})`,\n    };\n  }\n}\n\nfunction checkApiKey(provider: string): Check {\n  const envVar = providerEnvVar(provider);\n  if (envVar === null) {\n    return { name: `${provider} key`, status: \"ok\", detail: \"(no key needed)\" };\n  }\n  if (process.env[envVar]) {\n    return { name: envVar, status: \"ok\", detail: \"set\" };\n  }\n  return {\n    name: envVar,\n    status: \"fail\",\n    detail: `unset (export ${envVar}=... or switch presets)`,\n  };\n}\n\nfunction providerEnvVar(provider: string): string | null {\n  if (provider === \"openai\") return \"OPENAI_API_KEY\";\n  if (provider === \"anthropic\") return \"ANTHROPIC_API_KEY\";\n  if (provider === \"google\") return \"GOOGLE_GENERATIVE_AI_API_KEY\";\n  return null;\n}\n\nasync function checkOllamaDaemon(): Promise<Check> {\n  const s = await detectOllama();\n  switch (s.status) {\n    case \"ready\":\n      return { name: \"ollama daemon\", status: \"ok\", detail: \"running, models present\" };\n    case \"running-no-models\":\n      return {\n        name: \"ollama daemon\",\n        status: \"warn\",\n        detail: `running — pull missing models: ollama pull ${LOCAL_MODELS.generation} && ollama pull ${LOCAL_MODELS.embeddings}`,\n      };\n    case \"installed-not-running\":\n      return {\n        name: \"ollama daemon\",\n        status: \"fail\",\n        detail: \"installed but not running — start with `ollama serve`\",\n      };\n    case \"not-installed\":\n      return {\n        name: \"ollama daemon\",\n        status: \"fail\",\n        detail: \"not installed — see https://ollama.com\",\n      };\n  }\n}\n\nasync function selfTestLlm(\n  config: Awaited<ReturnType<typeof loadConfig>>,\n): Promise<Check> {\n  try {\n    const router = await createLlmRouter({ config: config.llm });\n    const result = await router.selfTest();\n    return {\n      name: \"llm round-trip\",\n      status: \"ok\",\n      detail: `embed=${result.embedLatencyMs}ms gen=${result.generateLatencyMs}ms`,\n    };\n  } catch (err) {\n    return {\n      name: \"llm round-trip\",\n      status: \"fail\",\n      detail: err instanceof Error ? err.message : String(err),\n    };\n  }\n}\n\nasync function selfTestKuzu(dbPath: string, embeddingDimension: number): Promise<Check> {\n  const db = new GraphDb({ dbPath, embeddingDimension });\n  try {\n    await db.connect();\n    await db.migrate();\n    // Round-trip `array_cosine_similarity` (a core Kuzu function, no extension) so the\n    // doctor proves the actual semantic-search code path works, not just basic SQL.\n    const result = await db.query<{ ok: boolean; similarity: number }>(\n      `RETURN array_cosine_similarity([1.0, 0.0], [1.0, 0.0]) AS similarity, true AS ok`,\n    );\n    await db.close();\n    const row = result.data[0];\n    if (row?.ok !== true || typeof row.similarity !== \"number\") {\n      return { name: \"kuzu round-trip\", status: \"fail\", detail: \"unexpected result\" };\n    }\n    return {\n      name: \"kuzu round-trip\",\n      status: \"ok\",\n      detail: \"ok (brute-force semantic search ready)\",\n    };\n  } catch (err) {\n    await db.close().catch(() => {});\n    return {\n      name: \"kuzu round-trip\",\n      status: \"fail\",\n      detail: err instanceof Error ? err.message : String(err),\n    };\n  }\n}\n","import { execFile } from \"node:child_process\";\nimport { promisify } from \"node:util\";\n\nconst execFileAsync = promisify(execFile);\n\nexport type OllamaStatus =\n  | { status: \"ready\"; models: string[] }\n  | { status: \"running-no-models\"; models: string[] }\n  | { status: \"installed-not-running\" }\n  | { status: \"not-installed\" };\n\n/** Default models used for the local-ollama preset. */\nexport const LOCAL_MODELS = {\n  generation: \"qwen2.5-coder:1.5b\",\n  embeddings: \"nomic-embed-text\",\n} as const;\n\n/**\n * Probes the local Ollama daemon and binary. Returns one of four states:\n * - ready: running with the required models present\n * - running-no-models: running but required models need to be pulled\n * - installed-not-running: binary found but daemon is not reachable\n * - not-installed: binary not found on PATH\n */\nexport async function detectOllama(): Promise<OllamaStatus> {\n  // 1. HTTP probe — fast path, tells us if the daemon is up\n  try {\n    const res = await fetch(\"http://localhost:11434/api/tags\", {\n      signal: AbortSignal.timeout(800),\n    });\n    if (res.ok) {\n      const data = (await res.json()) as { models?: Array<{ name: string }> };\n      const models = (data.models ?? []).map((m) => m.name);\n      const neededPrefixes = [\n        LOCAL_MODELS.generation.split(\":\")[0]!,\n        LOCAL_MODELS.embeddings,\n      ];\n      const hasAll = neededPrefixes.every((prefix) =>\n        models.some((m) => m.startsWith(prefix)),\n      );\n      return hasAll\n        ? { status: \"ready\", models }\n        : { status: \"running-no-models\", models };\n    }\n  } catch {\n    // fall through to binary check\n  }\n\n  // 2. Binary check — distinguishes \"installed but not running\" from \"not installed\"\n  try {\n    await execFileAsync(\"ollama\", [\"--version\"], { timeout: 2000 });\n    return { status: \"installed-not-running\" };\n  } catch {\n    // fall through\n  }\n\n  return { status: \"not-installed\" };\n}\n","import { rm } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { GraphDb, defaultDbPath } from \"@codegraph/graph-db\";\nimport { indexRepo } from \"@codegraph/ingestion\";\nimport { createLlmRouter } from \"@codegraph/llm-router\";\nimport kleur from \"kleur\";\nimport { loadConfig } from \"../config-store.js\";\nimport { repoIdFromPath } from \"../repo-id.js\";\nimport { ProgressBar, makeSpinner, renderStatusTables } from \"../ui.js\";\n\nexport interface IndexCommandOptions {\n  repoPath: string;\n  noEmbed?: boolean;\n}\n\n/**\n * Walks a repository, parses it, optionally embeds every symbol, and writes everything\n * into the embedded Kuzu graph. The command is split into three visible phases - walk,\n * parse, embed - each wrapped in an `ora` spinner so the user sees liveness without\n * scrollbar spam.\n */\nexport async function runIndexCommand(opts: IndexCommandOptions): Promise<void> {\n  const config = await loadConfig();\n  const absolutePath = path.resolve(opts.repoPath);\n  const repoId = repoIdFromPath(absolutePath);\n  const dbPath = config.data.dbPath ?? defaultDbPath();\n\n  console.log(kleur.dim(`repo:    ${absolutePath}`));\n  console.log(kleur.dim(`id:      ${repoId}`));\n  console.log(kleur.dim(`graph:   ${dbPath}`));\n  console.log(\n    kleur.dim(\n      `llm:     ${config.llm.mode} / gen=${config.llm.generation.provider}:${config.llm.generation.model} / embed=${config.llm.embeddings.provider}:${config.llm.embeddings.model}`,\n    ),\n  );\n  console.log();\n\n  const graphDb = new GraphDb({\n    dbPath,\n    embeddingDimension: config.llm.embeddings.dimension,\n  });\n\n  const connectSpinner = makeSpinner(\"Opening graph\").start();\n  try {\n    await graphDb.connect();\n    await graphDb.migrate();\n    connectSpinner.succeed(`Graph ready ${kleur.dim(`(${dbPath})`)}`);\n  } catch (err) {\n    connectSpinner.fail(\"Failed to open graph\");\n    throw err;\n  }\n\n  let router: Awaited<ReturnType<typeof createLlmRouter>> | undefined;\n  if (!opts.noEmbed) {\n    const llmSpinner = makeSpinner(\"Initialising LLM router\").start();\n    try {\n      router = await createLlmRouter({ config: config.llm });\n      llmSpinner.succeed(\"LLM router initialised\");\n    } catch (err) {\n      llmSpinner.warn(\n        `LLM router init failed; continuing without embeddings (${err instanceof Error ? err.message : String(err)})`,\n      );\n      router = undefined;\n    }\n  }\n\n  // Wrapped in a single-element holder so the closure below can mutate the bar without\n  // TypeScript narrowing the outer reference to `never` (control-flow analysis can't see\n  // through async callbacks reliably; the holder makes the assignment a property write).\n  const bars: { parse: ProgressBar | null; embed: ProgressBar | null } = {\n    parse: null,\n    embed: null,\n  };\n\n  const result = await indexRepo({\n    repoId,\n    repoPath: absolutePath,\n    graphDb,\n    ...(router ? { router } : {}),\n    skipEmbeddings: opts.noEmbed === true || router === undefined,\n    onProgress: (event) => {\n      if (event.type === \"walk\") {\n        console.log(kleur.dim(`walked   ${event.files} files`));\n      }\n      if (event.type === \"parse\") {\n        if (!bars.parse) bars.parse = new ProgressBar(\"parsing\", event.total);\n        bars.parse.update(event.parsed);\n      }\n      if (event.type === \"upsert\") {\n        console.log(\n          kleur.dim(`upserted ${event.nodes} nodes, ${event.edges} edges`),\n        );\n      }\n      if (event.type === \"embed\") {\n        if (!bars.embed) bars.embed = new ProgressBar(\"embedding\", event.total);\n        bars.embed.update(event.embedded);\n      }\n    },\n  });\n\n  bars.parse?.done();\n  bars.embed?.done();\n  await graphDb.close();\n\n  console.log();\n  console.log(\n    kleur.green().bold(\n      `✓ Indexed ${result.nodes} nodes, ${result.edges} edges in ${(result.durationMs / 1000).toFixed(2)}s`,\n    ),\n  );\n  console.log(\n    kleur.dim(\n      `  parsed=${result.parsedFiles}  failed=${result.failedFiles}  embeddings=${result.embeddings}  dropped_edges=${result.droppedEdges}`,\n    ),\n  );\n}\n\nexport interface StatusCommandOptions {\n  repoPath: string;\n}\n\nexport async function runStatusCommand(opts: StatusCommandOptions): Promise<void> {\n  const config = await loadConfig();\n  const absolutePath = path.resolve(opts.repoPath);\n  const repoId = repoIdFromPath(absolutePath);\n  const graphDb = new GraphDb({\n    dbPath: config.data.dbPath ?? defaultDbPath(),\n    embeddingDimension: config.llm.embeddings.dimension,\n  });\n  const spinner = makeSpinner(\"Reading graph\").start();\n  try {\n    await graphDb.connect();\n    const stats = await graphDb.stats(repoId);\n    await graphDb.close();\n    spinner.stop();\n    console.log(renderStatusTables(repoId, stats));\n  } catch (err) {\n    spinner.fail(\"Failed to read graph\");\n    throw err;\n  }\n}\n\nexport interface WipeCommandOptions {\n  /** Optional repo path. When supplied we wipe only that repo's slice. */\n  repoPath?: string;\n  /** Skip the confirmation prompt - used by tests and `--force`. */\n  yes?: boolean;\n}\n\n/**\n * Reset the local graph. Two modes:\n * - With `repoPath`: delete the rows for that single repoId via `DETACH DELETE`. Safe,\n *   leaves other indexed repos intact, doesn't touch the schema.\n * - Without `repoPath`: nuke the entire on-disk graph directory. Used when a schema\n *   change requires a fresh database (e.g. switching embedding dimensions) or when\n *   Kuzu's on-disk metadata gets corrupted.\n *\n * Both modes refuse to run unless `yes` is true, so an accidental `codegraph wipe` in\n * a shared shell never silently deletes work.\n */\nexport async function runWipeCommand(opts: WipeCommandOptions): Promise<void> {\n  const config = await loadConfig();\n  const dbPath = config.data.dbPath ?? defaultDbPath();\n  if (opts.repoPath) {\n    const absolutePath = path.resolve(opts.repoPath);\n    const repoId = repoIdFromPath(absolutePath);\n    if (!opts.yes) {\n      console.log(\n        kleur.yellow(\n          `Will delete all graph rows for ${kleur.bold(repoId)} (${absolutePath}). Pass --yes to confirm.`,\n        ),\n      );\n      return;\n    }\n    const spinner = makeSpinner(`Wiping ${repoId}`).start();\n    const graphDb = new GraphDb({\n      dbPath,\n      embeddingDimension: config.llm.embeddings.dimension,\n    });\n    try {\n      await graphDb.connect();\n      await graphDb.migrate();\n      await graphDb.deleteByRepo(repoId);\n      await graphDb.close();\n      spinner.succeed(`Removed ${repoId} from ${dbPath}`);\n    } catch (err) {\n      spinner.fail(\"Wipe failed\");\n      throw err;\n    }\n    return;\n  }\n  if (!opts.yes) {\n    console.log(\n      kleur.yellow(\n        `Will delete the entire graph directory at ${kleur.bold(dbPath)}. Pass --yes to confirm.`,\n      ),\n    );\n    return;\n  }\n  const spinner = makeSpinner(`Removing ${dbPath}`).start();\n  try {\n    await rm(dbPath, { recursive: true, force: true });\n    spinner.succeed(`Graph directory removed. Re-run \\`codegraph index <repo>\\` to rebuild.`);\n  } catch (err) {\n    spinner.fail(\"Wipe failed\");\n    throw err;\n  }\n}\n","import { readFile } from \"node:fs/promises\";\nimport { createRequire } from \"node:module\";\nimport { extname, dirname, join } from \"node:path\";\nimport Parser from \"web-tree-sitter\";\nimport type { Language as LanguageKind } from \"@codegraph/shared\";\n\nconst require = createRequire(import.meta.url);\n\n/** Maps our `Language` union to the wasm grammar bundled by `tree-sitter-wasms`. */\nconst GRAMMAR_FILE: Record<LanguageKind, string> = {\n  typescript: \"tree-sitter-typescript.wasm\",\n  tsx: \"tree-sitter-tsx.wasm\",\n  javascript: \"tree-sitter-javascript.wasm\",\n  jsx: \"tree-sitter-javascript.wasm\",\n  python: \"tree-sitter-python.wasm\",\n};\n\nlet initPromise: Promise<void> | null = null;\nconst languageCache = new Map<LanguageKind, Parser.Language>();\n\nasync function ensureInit(): Promise<void> {\n  if (!initPromise) initPromise = Parser.init();\n  await initPromise;\n}\n\nfunction grammarPath(lang: LanguageKind): string {\n  let pkgRoot: string;\n  try {\n    pkgRoot = dirname(require.resolve(\"tree-sitter-wasms/package.json\"));\n  } catch {\n    // Fallback for environments where tree-sitter-wasms is not installed\n    pkgRoot = join(dirname(require.resolve(\"web-tree-sitter\")), \"..\", \"tree-sitter-wasms\");\n  }\n  return join(pkgRoot, \"out\", GRAMMAR_FILE[lang]);\n}\n\nexport async function loadLanguage(lang: LanguageKind): Promise<Parser.Language> {\n  await ensureInit();\n  const cached = languageCache.get(lang);\n  if (cached) return cached;\n  const buffer = await readFile(grammarPath(lang));\n  // Load from Uint8Array; web-tree-sitter's fetch fallback doesn't work in plain Node.\n  const loaded = await Parser.Language.load(new Uint8Array(buffer));\n  languageCache.set(lang, loaded);\n  return loaded;\n}\n\nexport function detectLanguage(filePath: string): LanguageKind | null {\n  const ext = extname(filePath).toLowerCase();\n  switch (ext) {\n    case \".ts\":\n      return \"typescript\";\n    case \".tsx\":\n      return \"tsx\";\n    case \".js\":\n    case \".mjs\":\n    case \".cjs\":\n      return \"javascript\";\n    case \".jsx\":\n      return \"jsx\";\n    case \".py\":\n      return \"python\";\n    default:\n      return null;\n  }\n}\n\nexport interface ParsedFile {\n  tree: Parser.Tree;\n  rootNode: Parser.SyntaxNode;\n  language: LanguageKind;\n  source: string;\n}\n\nexport async function parseSource(source: string, language: LanguageKind): Promise<ParsedFile> {\n  const lang = await loadLanguage(language);\n  const parser = new Parser();\n  parser.setLanguage(lang);\n  const tree = parser.parse(source);\n  if (!tree) {\n    throw new Error(`tree-sitter failed to parse ${language} source`);\n  }\n  return {\n    tree,\n    rootNode: tree.rootNode,\n    language,\n    source,\n  };\n}\n","import { createHash } from \"node:crypto\";\nimport { basename } from \"node:path\";\nimport Parser from \"web-tree-sitter\";\n\ntype SyntaxNode = Parser.SyntaxNode;\nimport {\n  type GraphEdge,\n  type GraphNode,\n  type Language,\n  makeFileId,\n  makeNodeId,\n} from \"@codegraph/shared\";\nimport { parseSource } from \"../parser.js\";\nimport {\n  endLine,\n  findChildByType,\n  findChildrenByType,\n  isPascalCase,\n  leadingCommentFor,\n  nodeText,\n  startLine,\n  walk,\n} from \"../walker.js\";\nimport { extractPythonFile } from \"./extract-python.js\";\nimport { detectRoutes } from \"./routes.js\";\n\nexport interface ExtractFileInput {\n  repoId: string;\n  /** Path of the file *relative to the repo root*. Drives node ids. */\n  relativePath: string;\n  /** Absolute path on disk, used for ROUTE framework detection. */\n  absolutePath: string;\n  language: Language;\n  source: string;\n}\n\nexport interface ExtractFileResult {\n  file: GraphNode;\n  nodes: GraphNode[];\n  edges: GraphEdge[];\n}\n\n/**\n * Top-level extraction. Returns the file node, every symbol declared in the\n * file, and every edge that can be derived without cross-file knowledge.\n *\n * Some edges (CALLS, INHERITS, RENDERS) are emitted with\n * `unresolvedTargetName` set. The orchestrator resolves them against the\n * full symbol table after all files are parsed.\n *\n * Dispatches to language-specific extractors: Python has a distinct AST and\n * import model from JS/TS, so it lives in its own module.\n */\nexport async function extractFile(input: ExtractFileInput): Promise<ExtractFileResult> {\n  if (input.language === \"python\") {\n    return extractPythonFile(input);\n  }\n  return extractJsTsFile(input);\n}\n\nasync function extractJsTsFile(input: ExtractFileInput): Promise<ExtractFileResult> {\n  const parsed = await parseSource(input.source, input.language);\n\n  const fileId = makeFileId({ repoId: input.repoId, path: input.relativePath });\n  const file: GraphNode = {\n    id: fileId,\n    kind: \"File\",\n    repoId: input.repoId,\n    name: basename(input.relativePath),\n    path: input.relativePath,\n    lineStart: 1,\n    lineEnd: Math.max(1, parsed.rootNode.endPosition.row + 1),\n    language: input.language,\n    sizeBytes: Buffer.byteLength(input.source, \"utf8\"),\n    contentHash: sha1(input.source),\n  };\n\n  const nodes: GraphNode[] = [];\n  const edges: GraphEdge[] = [];\n\n  // Per-file map of declared symbol names -> ids. Lets us resolve\n  // intra-file CALLS / RENDERS edges immediately and emit cross-file ones\n  // as unresolved.\n  const localSymbols = new Map<string, string>();\n\n  // Pass 1: symbol declarations + DEFINES + EXPORTS + INHERITS.\n  for (const node of walk(parsed.rootNode)) {\n    const symbol = extractSymbol(node, input, parsed.source);\n    if (!symbol) continue;\n    nodes.push(symbol.node);\n    localSymbols.set(symbol.node.name, symbol.node.id);\n    edges.push({ kind: \"DEFINES\", fromId: fileId, toId: symbol.node.id });\n    if (symbol.node.isExported) {\n      edges.push({ kind: \"EXPORTS\", fromId: fileId, toId: symbol.node.id });\n    }\n    if (symbol.parentClass) {\n      edges.push({\n        kind: \"INHERITS\",\n        fromId: symbol.node.id,\n        toId: \"\",\n        unresolvedTargetName: symbol.parentClass,\n      });\n    }\n  }\n\n  // Pass 2: imports - emit IMPORTS edges from the *file* to the resolved\n  // target path. The orchestrator turns the path into a target node id.\n  for (const node of walk(parsed.rootNode)) {\n    if (node.type === \"import_statement\") {\n      const src = findChildByType(node, \"string\");\n      if (!src) continue;\n      const raw = nodeText(src, parsed.source);\n      const target = raw.slice(1, -1);\n      edges.push({\n        kind: \"IMPORTS\",\n        fromId: fileId,\n        toId: \"\",\n        line: startLine(node),\n        fromPath: input.relativePath,\n        toPath: target,\n        unresolvedTargetName: target,\n      });\n    }\n  }\n\n  // Pass 3: shallow CALLS edges. We walk every call_expression and emit an\n  // edge from the *enclosing* symbol to the callee identifier. Cross-file\n  // resolution happens later; here we just record the name.\n  for (const node of walk(parsed.rootNode)) {\n    if (node.type !== \"call_expression\") continue;\n    const callee = node.childForFieldName(\"function\");\n    if (!callee) continue;\n    const calleeName = extractCalleeName(callee, parsed.source);\n    if (!calleeName) continue;\n    const enclosing = findEnclosingSymbolId(node, input, parsed.source, localSymbols);\n    if (!enclosing) continue;\n    edges.push({\n      kind: \"CALLS\",\n      fromId: enclosing,\n      toId: \"\",\n      line: startLine(node),\n      unresolvedTargetName: calleeName,\n    });\n  }\n\n  // Pass 4: JSX renders edges. PascalCase opening / self-closing elements\n  // are component usage; lowercase tags are HTML and are ignored.\n  if (input.language === \"tsx\" || input.language === \"jsx\") {\n    for (const node of walk(parsed.rootNode)) {\n      if (node.type !== \"jsx_opening_element\" && node.type !== \"jsx_self_closing_element\") continue;\n      const ident = node.childForFieldName(\"name\") ?? findChildByType(node, \"identifier\");\n      if (!ident) continue;\n      const tag = nodeText(ident, parsed.source);\n      if (!isPascalCase(tag)) continue;\n      const enclosing = findEnclosingSymbolId(node, input, parsed.source, localSymbols);\n      if (!enclosing) continue;\n      edges.push({\n        kind: \"RENDERS\",\n        fromId: enclosing,\n        toId: \"\",\n        line: startLine(node),\n        unresolvedTargetName: tag,\n      });\n    }\n  }\n\n  // Pass 5: route detection (Express handlers + Next.js file-system routes).\n  const routes = detectRoutes({\n    repoId: input.repoId,\n    relativePath: input.relativePath,\n    absolutePath: input.absolutePath,\n    fileId,\n    rootNode: parsed.rootNode,\n    source: parsed.source,\n    language: input.language,\n  });\n  for (const route of routes) {\n    nodes.push(route);\n    edges.push({ kind: \"DEFINES\", fromId: fileId, toId: route.id });\n  }\n\n  return { file, nodes, edges };\n}\n\ninterface ExtractedSymbol {\n  node: GraphNode;\n  parentClass?: string;\n}\n\nfunction extractSymbol(\n  node: SyntaxNode,\n  input: ExtractFileInput,\n  source: string,\n): ExtractedSymbol | null {\n  switch (node.type) {\n    case \"function_declaration\":\n    case \"generator_function_declaration\":\n      return functionFromDeclaration(node, input, source);\n    case \"class_declaration\":\n      return classFromDeclaration(node, input, source);\n    case \"interface_declaration\":\n      return interfaceFromDeclaration(node, input, source, \"Interface\");\n    case \"type_alias_declaration\":\n      return interfaceFromDeclaration(node, input, source, \"Interface\");\n    case \"lexical_declaration\":\n    case \"variable_declaration\":\n      return variableOrArrowFromDeclaration(node, input, source);\n    default:\n      return null;\n  }\n}\n\nfunction functionFromDeclaration(\n  node: SyntaxNode,\n  input: ExtractFileInput,\n  source: string,\n): ExtractedSymbol | null {\n  const nameNode = node.childForFieldName(\"name\");\n  if (!nameNode) return null;\n  const name = nodeText(nameNode, source);\n  const line = startLine(node);\n  // PascalCase declared functions that return JSX (e.g. `function Sidebar() { return\n  // <nav/> }`) are React function components. The earlier extractor only classified\n  // arrow-function components, which meant declared components landed as `Function`\n  // and disappeared from `get_component_tree`.\n  const isComponent =\n    (input.language === \"tsx\" || input.language === \"jsx\") &&\n    isPascalCase(name) &&\n    containsJsx(node.childForFieldName(\"body\"));\n  const kind = isComponent ? \"Component\" : \"Function\";\n  const id = makeNodeId({\n    repoId: input.repoId,\n    kind,\n    path: input.relativePath,\n    name,\n    line,\n  });\n  return {\n    node: {\n      id,\n      kind,\n      repoId: input.repoId,\n      name,\n      path: input.relativePath,\n      lineStart: line,\n      lineEnd: endLine(node),\n      signature: extractSignature(node, source),\n      leadingComment: leadingCommentFor(parentForLeadingComment(node), source),\n      isExported: isExported(node),\n      ...(kind === \"Function\"\n        ? { isAsync: hasAsyncModifier(node, source) }\n        : {}),\n    },\n  };\n}\n\nfunction classFromDeclaration(\n  node: SyntaxNode,\n  input: ExtractFileInput,\n  source: string,\n): ExtractedSymbol | null {\n  const nameNode = node.childForFieldName(\"name\");\n  if (!nameNode) return null;\n  const name = nodeText(nameNode, source);\n  const line = startLine(node);\n  const isComponent = looksLikeComponentClass(node, name, source);\n  const kind = isComponent ? \"Component\" : \"Class\";\n  const id = makeNodeId({\n    repoId: input.repoId,\n    kind,\n    path: input.relativePath,\n    name,\n    line,\n  });\n  const parentClass = extractExtendsName(node, source);\n  return {\n    node: {\n      id,\n      kind,\n      repoId: input.repoId,\n      name,\n      path: input.relativePath,\n      lineStart: line,\n      lineEnd: endLine(node),\n      signature: `class ${name}${parentClass ? ` extends ${parentClass}` : \"\"}`,\n      leadingComment: leadingCommentFor(parentForLeadingComment(node), source),\n      isExported: isExported(node),\n    },\n    ...(parentClass !== undefined ? { parentClass } : {}),\n  };\n}\n\nfunction interfaceFromDeclaration(\n  node: SyntaxNode,\n  input: ExtractFileInput,\n  source: string,\n  kind: \"Interface\",\n): ExtractedSymbol | null {\n  const nameNode = node.childForFieldName(\"name\");\n  if (!nameNode) return null;\n  const name = nodeText(nameNode, source);\n  const line = startLine(node);\n  const id = makeNodeId({\n    repoId: input.repoId,\n    kind,\n    path: input.relativePath,\n    name,\n    line,\n  });\n  return {\n    node: {\n      id,\n      kind,\n      repoId: input.repoId,\n      name,\n      path: input.relativePath,\n      lineStart: line,\n      lineEnd: endLine(node),\n      signature: nodeText(node, source).split(\"\\n\")[0]?.slice(0, 200) ?? \"\",\n      leadingComment: leadingCommentFor(parentForLeadingComment(node), source),\n      isExported: isExported(node),\n    },\n  };\n}\n\n/**\n * Handles `const x = () => ...` and `const X = () => <jsx/>`. The lexical\n * declaration may contain multiple declarators; we emit one symbol per\n * named declarator. Functions vs Components are distinguished by\n * PascalCase + JSX return value heuristic.\n */\nfunction variableOrArrowFromDeclaration(\n  node: SyntaxNode,\n  input: ExtractFileInput,\n  source: string,\n): ExtractedSymbol | null {\n  const declarators = findChildrenByType(node, \"variable_declarator\");\n  if (declarators.length === 0) return null;\n  // We can only return one symbol from this entry point. The walk visits\n  // each declarator separately too, so picking the first preserves data\n  // for \"const a = 1, b = 2\"-style edge cases.\n  const decl = declarators[0];\n  if (!decl) return null;\n  const nameNode = decl.childForFieldName(\"name\");\n  const value = decl.childForFieldName(\"value\");\n  if (!nameNode) return null;\n  // Destructuring patterns (`const [a, b] = ...`, `const { x } = ...`) produce a\n  // composite name node whose text is the literal source slice. Emitting `[a, b]` as\n  // the symbol name pollutes the graph and breaks `find_callers` / `affected_by`\n  // lookups. Phase-1 simply drops these; the underlying values are still reachable via\n  // their parent file's DEFINES edges.\n  if (nameNode.type !== \"identifier\" && nameNode.type !== \"property_identifier\") {\n    return null;\n  }\n  const name = nodeText(nameNode, source);\n  const line = startLine(decl);\n\n  const isArrow = value?.type === \"arrow_function\" || value?.type === \"function_expression\";\n  if (isArrow) {\n    const isComponent = isPascalCase(name) && containsJsx(value);\n    const kind = isComponent ? \"Component\" : \"Function\";\n    const id = makeNodeId({\n      repoId: input.repoId,\n      kind,\n      path: input.relativePath,\n      name,\n      line,\n    });\n    return {\n      node: {\n        id,\n        kind,\n        repoId: input.repoId,\n        name,\n        path: input.relativePath,\n        lineStart: line,\n        lineEnd: endLine(decl),\n        signature: extractSignature(value, source),\n        leadingComment: leadingCommentFor(node, source),\n        isExported: isExported(node),\n        ...(kind === \"Function\" ? { isArrow: true } : {}),\n      },\n    };\n  }\n\n  const id = makeNodeId({\n    repoId: input.repoId,\n    kind: \"Variable\",\n    path: input.relativePath,\n    name,\n    line,\n  });\n  return {\n    node: {\n      id,\n      kind: \"Variable\",\n      repoId: input.repoId,\n      name,\n      path: input.relativePath,\n      lineStart: line,\n      lineEnd: endLine(decl),\n      signature: nodeText(decl, source).split(\"\\n\")[0]?.slice(0, 200) ?? \"\",\n      leadingComment: leadingCommentFor(node, source),\n      isExported: isExported(node),\n    },\n  };\n}\n\nfunction extractSignature(node: SyntaxNode | null, source: string): string {\n  if (!node) return \"\";\n  const params = node.childForFieldName(\"parameters\");\n  const ret = node.childForFieldName(\"return_type\");\n  const name = node.childForFieldName(\"name\");\n  const head = name ? nodeText(name, source) : \"\";\n  const ps = params ? nodeText(params, source) : \"()\";\n  const rs = ret ? ` ${nodeText(ret, source)}` : \"\";\n  return `${head}${ps}${rs}`.trim().slice(0, 200);\n}\n\n/**\n * Decide which name a call expression represents. For a bare identifier, the answer is\n * the identifier itself. For member expressions like `api.get(...)` we deliberately\n * surface the *object* identifier (`api`) instead of the method (`get`): in real-world\n * frontends the object is the meaningful symbol (the imported client, store, or hook\n * instance), while the method is a generic verb that collides across the graph.\n * `find_callers(\"api\")` then returns every site that uses the imported `api` client,\n * which is what the agent typically wants.\n *\n * For deep chains (`getApi().query()`, `a.b.c()`) we fall back to the property name -\n * the object is not a simple identifier, so the heuristic above can't apply.\n */\nfunction extractCalleeName(callee: SyntaxNode, source: string): string | null {\n  if (callee.type === \"identifier\") return nodeText(callee, source);\n  if (callee.type === \"member_expression\") {\n    const object = callee.childForFieldName(\"object\");\n    if (object && object.type === \"identifier\") {\n      return nodeText(object, source);\n    }\n    const property = callee.childForFieldName(\"property\");\n    if (property) return nodeText(property, source);\n  }\n  return null;\n}\n\nfunction extractExtendsName(classNode: SyntaxNode, source: string): string | undefined {\n  const heritage = findChildByType(classNode, \"class_heritage\");\n  if (!heritage) return undefined;\n  const extendsClause = findChildByType(heritage, \"extends_clause\");\n  if (!extendsClause) {\n    // tree-sitter-typescript flattens heritage differently; check direct\n    // identifier children of class_heritage as a fallback.\n    const ident = findChildByType(heritage, \"identifier\");\n    if (ident) return nodeText(ident, source);\n    return undefined;\n  }\n  const ident =\n    findChildByType(extendsClause, \"identifier\") ??\n    findChildByType(extendsClause, \"member_expression\");\n  return ident ? nodeText(ident, source) : undefined;\n}\n\nfunction looksLikeComponentClass(classNode: SyntaxNode, name: string, source: string): boolean {\n  if (!isPascalCase(name)) return false;\n  const parent = extractExtendsName(classNode, source) ?? \"\";\n  return /(?:^|\\.)Component$|PureComponent$/.test(parent);\n}\n\nfunction containsJsx(node: SyntaxNode | null): boolean {\n  if (!node) return false;\n  for (const child of walk(node)) {\n    if (\n      child.type === \"jsx_element\" ||\n      child.type === \"jsx_self_closing_element\" ||\n      child.type === \"jsx_fragment\"\n    ) {\n      return true;\n    }\n  }\n  return false;\n}\n\nfunction hasAsyncModifier(node: SyntaxNode, source: string): boolean {\n  for (let i = 0; i < node.childCount; i++) {\n    const child = node.child(i);\n    if (!child) continue;\n    if (child.type === \"async\" || nodeText(child, source) === \"async\") return true;\n    // Stop after we leave the declaration's modifier head.\n    if (child.type === \"function\" || child.type === \"class\") return false;\n  }\n  return false;\n}\n\nfunction isExported(node: SyntaxNode): boolean {\n  let cursor: SyntaxNode | null = node.parent;\n  while (cursor) {\n    if (cursor.type === \"export_statement\") return true;\n    if (cursor.type === \"program\") return false;\n    cursor = cursor.parent;\n  }\n  return false;\n}\n\n/**\n * When fetching a leading comment, we want the comment *above* the\n * `export` wrapper, not above the inner declaration. So we hop up to the\n * outermost export_statement before looking for siblings.\n */\nfunction parentForLeadingComment(node: SyntaxNode): SyntaxNode {\n  let cursor: SyntaxNode = node;\n  while (cursor.parent && cursor.parent.type === \"export_statement\") {\n    cursor = cursor.parent;\n  }\n  return cursor;\n}\n\nfunction findEnclosingSymbolId(\n  node: SyntaxNode,\n  input: ExtractFileInput,\n  source: string,\n  localSymbols: Map<string, string>,\n): string | null {\n  let cursor: SyntaxNode | null = node.parent;\n  while (cursor) {\n    if (\n      cursor.type === \"function_declaration\" ||\n      cursor.type === \"method_definition\" ||\n      cursor.type === \"class_declaration\" ||\n      cursor.type === \"arrow_function\" ||\n      cursor.type === \"function_expression\"\n    ) {\n      const name = enclosingDeclarationName(cursor, source);\n      if (name) {\n        const id = localSymbols.get(name);\n        if (id) return id;\n      }\n    }\n    cursor = cursor.parent;\n  }\n  // Falls back to the file node so module-level expressions still get a\n  // sensible \"from\" endpoint.\n  return makeFileId({ repoId: input.repoId, path: input.relativePath });\n}\n\nfunction enclosingDeclarationName(node: SyntaxNode, source: string): string | null {\n  const nameField = node.childForFieldName(\"name\");\n  if (nameField) return nodeText(nameField, source);\n  // Arrow functions and function expressions carry their name on the\n  // surrounding variable_declarator.\n  let cursor: SyntaxNode | null = node.parent;\n  while (cursor) {\n    if (cursor.type === \"variable_declarator\") {\n      const declName = cursor.childForFieldName(\"name\");\n      if (declName) return nodeText(declName, source);\n      return null;\n    }\n    if (cursor.type === \"function_declaration\" || cursor.type === \"class_declaration\") return null;\n    cursor = cursor.parent;\n  }\n  return null;\n}\n\nfunction sha1(s: string): string {\n  return createHash(\"sha1\").update(s).digest(\"hex\");\n}\n","import Parser from \"web-tree-sitter\";\n\ntype SyntaxNode = Parser.SyntaxNode;\n\n/**\n * Lazy depth-first walk that yields every descendant. Excludes the root\n * itself. Used by extractors to find symbols anywhere in a file without\n * stitching together SyntaxNode cursor APIs.\n */\nexport function* walk(node: SyntaxNode): Generator<SyntaxNode> {\n  const stack: SyntaxNode[] = [];\n  for (let i = node.namedChildCount - 1; i >= 0; i--) {\n    const child = node.namedChild(i);\n    if (child) stack.push(child);\n  }\n  while (stack.length > 0) {\n    const current = stack.pop();\n    if (!current) continue;\n    yield current;\n    for (let i = current.namedChildCount - 1; i >= 0; i--) {\n      const child = current.namedChild(i);\n      if (child) stack.push(child);\n    }\n  }\n}\n\nexport function findChildByType(node: SyntaxNode, type: string): SyntaxNode | null {\n  for (let i = 0; i < node.namedChildCount; i++) {\n    const child = node.namedChild(i);\n    if (child && child.type === type) return child;\n  }\n  return null;\n}\n\nexport function findChildrenByType(node: SyntaxNode, type: string): SyntaxNode[] {\n  const out: SyntaxNode[] = [];\n  for (let i = 0; i < node.namedChildCount; i++) {\n    const child = node.namedChild(i);\n    if (child && child.type === type) out.push(child);\n  }\n  return out;\n}\n\nexport function nodeText(node: SyntaxNode, source: string): string {\n  return source.slice(node.startIndex, node.endIndex);\n}\n\n/**\n * Tree-sitter line numbers are 0-indexed; we surface 1-indexed numbers\n * everywhere downstream so they match what editors and stack traces use.\n */\nexport function startLine(node: SyntaxNode): number {\n  return node.startPosition.row + 1;\n}\n\nexport function endLine(node: SyntaxNode): number {\n  return node.endPosition.row + 1;\n}\n\n/**\n * Returns the leading line-comment block immediately above `node`, joined\n * into a single string. Empty string when no comment is found.\n */\nexport function leadingCommentFor(node: SyntaxNode, source: string): string {\n  let cursor: SyntaxNode | null = node.previousNamedSibling;\n  const lines: string[] = [];\n  while (cursor && /comment/.test(cursor.type)) {\n    lines.unshift(stripCommentMarkers(nodeText(cursor, source)));\n    cursor = cursor.previousNamedSibling;\n  }\n  return lines.join(\"\\n\").trim();\n}\n\nfunction stripCommentMarkers(text: string): string {\n  return text\n    .replace(/^\\/\\*+/, \"\")\n    .replace(/\\*+\\/$/, \"\")\n    .replace(/^\\/\\//gm, \"\")\n    .replace(/^\\s*\\*/gm, \"\")\n    .trim();\n}\n\nexport function isPascalCase(name: string): boolean {\n  return /^[A-Z][A-Za-z0-9]*$/.test(name);\n}\n","import { createHash } from \"node:crypto\";\nimport { basename } from \"node:path\";\nimport Parser from \"web-tree-sitter\";\n\ntype SyntaxNode = Parser.SyntaxNode;\nimport {\n  type GraphEdge,\n  type GraphNode,\n  makeFileId,\n  makeNodeId,\n} from \"@codegraph/shared\";\nimport { parseSource } from \"../parser.js\";\nimport { endLine, findChildByType, nodeText, startLine, walk } from \"../walker.js\";\nimport type { ExtractFileInput, ExtractFileResult } from \"./extract.js\";\n\n/**\n * Python extractor. Emits the same `GraphNode` / `GraphEdge` shapes as the JS/TS\n * extractor so the rest of the pipeline (resolver, embedder, MCP tools) is\n * language-agnostic. Scope of v1:\n *\n *   - `function_definition` / `class_definition` (including those wrapped in\n *     `decorated_definition`) become `Function` / `Class` nodes.\n *   - Module-level assignments to a plain identifier become `Variable` nodes.\n *   - `import_statement` + `import_from_statement` produce `IMPORTS` edges with\n *     the spec rewritten into a repo-relative path the shared resolver understands\n *     (e.g. `from .utils import x` -> `./utils`, `from app.services import y`\n *     -> `app/services`).\n *   - `call` expressions inside a function/class become `CALLS` edges keyed by the\n *     callee's last name segment.\n *\n * Out of scope for v1: `Interface` (Python has no analog), `Component` /\n * `RENDERS`, FastAPI/Flask route detection (handled in a separate pass when we\n * add it), import-alias-aware call resolution.\n */\nexport async function extractPythonFile(input: ExtractFileInput): Promise<ExtractFileResult> {\n  const parsed = await parseSource(input.source, input.language);\n\n  const fileId = makeFileId({ repoId: input.repoId, path: input.relativePath });\n  const file: GraphNode = {\n    id: fileId,\n    kind: \"File\",\n    repoId: input.repoId,\n    name: basename(input.relativePath),\n    path: input.relativePath,\n    lineStart: 1,\n    lineEnd: Math.max(1, parsed.rootNode.endPosition.row + 1),\n    language: input.language,\n    sizeBytes: Buffer.byteLength(input.source, \"utf8\"),\n    contentHash: sha1(input.source),\n  };\n\n  const nodes: GraphNode[] = [];\n  const edges: GraphEdge[] = [];\n\n  // Local symbol name -> id, used for intra-file call resolution. Cross-file\n  // calls are emitted unresolved and matched by the orchestrator's resolver.\n  const localSymbols = new Map<string, string>();\n\n  // Pass 1: function / class / module-level variable declarations.\n  for (const node of walk(parsed.rootNode)) {\n    const symbol = extractPythonSymbol(node, input, parsed.source);\n    if (!symbol) continue;\n    nodes.push(symbol.node);\n    localSymbols.set(symbol.node.name, symbol.node.id);\n    edges.push({ kind: \"DEFINES\", fromId: fileId, toId: symbol.node.id });\n    if (symbol.node.isExported) {\n      edges.push({ kind: \"EXPORTS\", fromId: fileId, toId: symbol.node.id });\n    }\n    for (const parent of symbol.parentClasses ?? []) {\n      edges.push({\n        kind: \"INHERITS\",\n        fromId: symbol.node.id,\n        toId: \"\",\n        unresolvedTargetName: parent,\n      });\n    }\n  }\n\n  // Pass 2: imports. Rewrite Python module syntax to a repo-relative spec the\n  // shared resolver can match against `knownFilePaths`.\n  for (const node of walk(parsed.rootNode)) {\n    if (node.type === \"import_statement\") {\n      for (const moduleNode of moduleNamesInImport(node)) {\n        const spec = dottedNameToPath(moduleNode, parsed.source);\n        if (!spec) continue;\n        edges.push({\n          kind: \"IMPORTS\",\n          fromId: fileId,\n          toId: \"\",\n          line: startLine(node),\n          fromPath: input.relativePath,\n          toPath: spec,\n          unresolvedTargetName: spec,\n        });\n      }\n    } else if (node.type === \"import_from_statement\") {\n      const moduleNode = node.childForFieldName(\"module_name\");\n      if (!moduleNode) continue;\n      const spec = moduleSpecFromFromImport(moduleNode, parsed.source);\n      if (!spec) continue;\n      edges.push({\n        kind: \"IMPORTS\",\n        fromId: fileId,\n        toId: \"\",\n        line: startLine(node),\n        fromPath: input.relativePath,\n        toPath: spec,\n        unresolvedTargetName: spec,\n      });\n    }\n  }\n\n  // Pass 3: CALLS. Enclosing symbol is the nearest function/class we already\n  // recorded in `localSymbols`; calls outside any defined symbol (top-level\n  // module code) are dropped.\n  for (const node of walk(parsed.rootNode)) {\n    if (node.type !== \"call\") continue;\n    const callee = node.childForFieldName(\"function\");\n    if (!callee) continue;\n    const calleeName = extractCalleeName(callee, parsed.source);\n    if (!calleeName) continue;\n    const enclosing = findEnclosingPythonSymbolId(node, localSymbols, parsed.source);\n    if (!enclosing) continue;\n    edges.push({\n      kind: \"CALLS\",\n      fromId: enclosing,\n      toId: \"\",\n      line: startLine(node),\n      unresolvedTargetName: calleeName,\n    });\n  }\n\n  return { file, nodes, edges };\n}\n\ninterface PythonSymbol {\n  node: GraphNode;\n  parentClasses?: string[];\n}\n\nfunction extractPythonSymbol(\n  node: SyntaxNode,\n  input: ExtractFileInput,\n  source: string,\n): PythonSymbol | null {\n  switch (node.type) {\n    case \"function_definition\":\n      return pythonFunction(node, input, source);\n    case \"class_definition\":\n      return pythonClass(node, input, source);\n    case \"assignment\":\n      return pythonModuleVariable(node, input, source);\n    default:\n      return null;\n  }\n}\n\nfunction pythonFunction(\n  node: SyntaxNode,\n  input: ExtractFileInput,\n  source: string,\n): PythonSymbol | null {\n  const nameNode = node.childForFieldName(\"name\");\n  if (!nameNode) return null;\n  const name = nodeText(nameNode, source);\n  // Top-of-the-def line. If the def is wrapped in a `decorated_definition`, the\n  // decorators sit on earlier lines but the symbol's \"real\" location is the\n  // `def`/`class` keyword line, which matches what editors and stack traces use.\n  const line = startLine(node);\n  const id = makeNodeId({\n    repoId: input.repoId,\n    kind: \"Function\",\n    path: input.relativePath,\n    name,\n    line,\n  });\n  return {\n    node: {\n      id,\n      kind: \"Function\",\n      repoId: input.repoId,\n      name,\n      path: input.relativePath,\n      lineStart: decoratedLineStart(node),\n      lineEnd: endLine(node),\n      signature: pythonDefSignature(node, source, \"def\"),\n      leadingComment: pythonDocstring(node, source),\n      isExported: isPythonExported(name),\n      isAsync: isAsyncFunctionDef(node, source),\n    },\n  };\n}\n\nfunction pythonClass(\n  node: SyntaxNode,\n  input: ExtractFileInput,\n  source: string,\n): PythonSymbol | null {\n  const nameNode = node.childForFieldName(\"name\");\n  if (!nameNode) return null;\n  const name = nodeText(nameNode, source);\n  const line = startLine(node);\n  const id = makeNodeId({\n    repoId: input.repoId,\n    kind: \"Class\",\n    path: input.relativePath,\n    name,\n    line,\n  });\n  const parents = extractPythonBaseClasses(node, source);\n  return {\n    node: {\n      id,\n      kind: \"Class\",\n      repoId: input.repoId,\n      name,\n      path: input.relativePath,\n      lineStart: decoratedLineStart(node),\n      lineEnd: endLine(node),\n      signature: pythonDefSignature(node, source, \"class\"),\n      leadingComment: pythonDocstring(node, source),\n      isExported: isPythonExported(name),\n    },\n    ...(parents.length > 0 ? { parentClasses: parents } : {}),\n  };\n}\n\n/**\n * Emit a `Variable` node only for module-level assignments of the form\n * `NAME = <expr>`. Tuple unpacking, class attributes, and locals inside a\n * function body are intentionally skipped to keep the graph signal-to-noise\n * high.\n */\nfunction pythonModuleVariable(\n  node: SyntaxNode,\n  input: ExtractFileInput,\n  source: string,\n): PythonSymbol | null {\n  // Module-level scoping: assignment's parent is `expression_statement`, whose\n  // parent is `module`.\n  const stmtParent = node.parent;\n  if (!stmtParent || stmtParent.type !== \"expression_statement\") return null;\n  const moduleParent = stmtParent.parent;\n  if (!moduleParent || moduleParent.type !== \"module\") return null;\n\n  const left = node.childForFieldName(\"left\");\n  if (!left || left.type !== \"identifier\") return null;\n  const name = nodeText(left, source);\n  const line = startLine(node);\n  const id = makeNodeId({\n    repoId: input.repoId,\n    kind: \"Variable\",\n    path: input.relativePath,\n    name,\n    line,\n  });\n  return {\n    node: {\n      id,\n      kind: \"Variable\",\n      repoId: input.repoId,\n      name,\n      path: input.relativePath,\n      lineStart: line,\n      lineEnd: endLine(node),\n      signature: nodeText(node, source).split(\"\\n\")[0]?.slice(0, 200) ?? \"\",\n      isExported: isPythonExported(name),\n    },\n  };\n}\n\n/** Python \"export\" convention: a name is public iff it doesn't start with `_`. */\nfunction isPythonExported(name: string): boolean {\n  return !name.startsWith(\"_\");\n}\n\n/** `async def foo(): ...` -> true. tree-sitter-python keeps `async` as a leading unnamed token. */\nfunction isAsyncFunctionDef(node: SyntaxNode, source: string): boolean {\n  return nodeText(node, source).trimStart().startsWith(\"async\");\n}\n\n/**\n * When a def is wrapped in `decorated_definition`, the user-visible block starts\n * at the first decorator line. Using that as `lineStart` makes blast-radius\n * tools point at the right span.\n */\nfunction decoratedLineStart(node: SyntaxNode): number {\n  const parent = node.parent;\n  if (parent && parent.type === \"decorated_definition\") {\n    return startLine(parent);\n  }\n  return startLine(node);\n}\n\n/** First line of the def header, trimmed and capped. */\nfunction pythonDefSignature(node: SyntaxNode, source: string, keyword: \"def\" | \"class\"): string {\n  const text = nodeText(node, source);\n  const firstLine = text.split(\"\\n\")[0]?.trim() ?? \"\";\n  // Strip trailing colon for a cleaner signature.\n  const cleaned = firstLine.replace(/:\\s*$/, \"\");\n  if (cleaned.length > 0) return cleaned.slice(0, 200);\n  return `${keyword} ?`;\n}\n\n/**\n * Returns the docstring of a function/class as a leading comment if one is the\n * first statement of the body. Python uses string literals at the top of a block\n * instead of comments above the def, so this is the closest analog to the JS\n * extractor's leading-comment capture.\n */\nfunction pythonDocstring(node: SyntaxNode, source: string): string {\n  const body = node.childForFieldName(\"body\");\n  if (!body) return \"\";\n  const firstStmt = body.namedChild(0);\n  if (!firstStmt || firstStmt.type !== \"expression_statement\") return \"\";\n  const expr = firstStmt.namedChild(0);\n  if (!expr || expr.type !== \"string\") return \"\";\n  const raw = nodeText(expr, source);\n  return stripPythonStringQuotes(raw).trim();\n}\n\nfunction stripPythonStringQuotes(raw: string): string {\n  // Handles triple and single-quoted forms, optional prefixes (r, b, f, u, rb...).\n  const withoutPrefix = raw.replace(/^[rRbBuUfF]+/, \"\");\n  if (withoutPrefix.startsWith('\"\"\"') && withoutPrefix.endsWith('\"\"\"')) {\n    return withoutPrefix.slice(3, -3);\n  }\n  if (withoutPrefix.startsWith(\"'''\") && withoutPrefix.endsWith(\"'''\")) {\n    return withoutPrefix.slice(3, -3);\n  }\n  if (\n    (withoutPrefix.startsWith('\"') && withoutPrefix.endsWith('\"')) ||\n    (withoutPrefix.startsWith(\"'\") && withoutPrefix.endsWith(\"'\"))\n  ) {\n    return withoutPrefix.slice(1, -1);\n  }\n  return withoutPrefix;\n}\n\n/**\n * Collect base-class names from `class Foo(Bar, mod.Baz, metaclass=Meta): ...`.\n * Keyword args (`metaclass=...`) are skipped; attribute references collapse to\n * their last segment so the resolver can match `Baz` against the symbol table.\n */\nfunction extractPythonBaseClasses(node: SyntaxNode, source: string): string[] {\n  const supers = node.childForFieldName(\"superclasses\");\n  if (!supers) return [];\n  const out: string[] = [];\n  for (let i = 0; i < supers.namedChildCount; i++) {\n    const arg = supers.namedChild(i);\n    if (!arg) continue;\n    if (arg.type === \"keyword_argument\") continue;\n    const name = extractCalleeName(arg, source);\n    if (name) out.push(name);\n  }\n  return out;\n}\n\n/**\n * `import_statement` may contain one or more `dotted_name` / `aliased_import`\n * children. We extract the underlying module name from each so a single\n * `import a, b.c` produces two IMPORTS edges.\n */\nfunction moduleNamesInImport(importNode: SyntaxNode): SyntaxNode[] {\n  const out: SyntaxNode[] = [];\n  for (let i = 0; i < importNode.namedChildCount; i++) {\n    const child = importNode.namedChild(i);\n    if (!child) continue;\n    if (child.type === \"dotted_name\") {\n      out.push(child);\n    } else if (child.type === \"aliased_import\") {\n      const inner = child.childForFieldName(\"name\") ?? findChildByType(child, \"dotted_name\");\n      if (inner) out.push(inner);\n    }\n  }\n  return out;\n}\n\n/** Convert `a.b.c` (a `dotted_name`) to a repo-rooted spec `a/b/c`. */\nfunction dottedNameToPath(node: SyntaxNode, source: string): string | null {\n  if (node.type !== \"dotted_name\") return null;\n  const segments: string[] = [];\n  for (let i = 0; i < node.namedChildCount; i++) {\n    const ident = node.namedChild(i);\n    if (!ident) continue;\n    segments.push(nodeText(ident, source));\n  }\n  if (segments.length === 0) return null;\n  return segments.join(\"/\");\n}\n\n/**\n * `from .utils import x`        module_name = `relative_import` with one dot\n * `from ..pkg.sub import x`     module_name = `relative_import` with two dots + dotted_name\n * `from app.services import x`  module_name = `dotted_name`\n *\n * Output specs match what the shared resolver expects:\n *   - relative -> `./X`, `../X`, `../../X`\n *   - absolute -> `app/services` (resolved against repo root as a final fallback)\n */\nfunction moduleSpecFromFromImport(moduleNode: SyntaxNode, source: string): string | null {\n  if (moduleNode.type === \"dotted_name\") {\n    return dottedNameToPath(moduleNode, source);\n  }\n  if (moduleNode.type !== \"relative_import\") return null;\n  // The prefix is an unnamed token (`.`, `..`, `...`). Count dots by scanning text.\n  let dotCount = 0;\n  let dottedSpec: string | null = null;\n  for (let i = 0; i < moduleNode.childCount; i++) {\n    const child = moduleNode.child(i);\n    if (!child) continue;\n    if (child.type === \"import_prefix\") {\n      dotCount = nodeText(child, source).length;\n    } else if (child.type === \"dotted_name\") {\n      dottedSpec = dottedNameToPath(child, source);\n    }\n  }\n  if (dotCount === 0) return dottedSpec;\n  // One dot = current package. Two dots = parent package. We translate to\n  // `./X` (zero `../` hops) and `../X` (one `../` hop), etc.\n  const upHops = \"../\".repeat(Math.max(0, dotCount - 1));\n  const base = upHops.length > 0 ? upHops.slice(0, -1) : \".\";\n  if (dottedSpec) return `${base}/${dottedSpec}`;\n  return base;\n}\n\n/**\n * Reduce a callee expression to a single name:\n *   - `foo(...)`        -> `foo`\n *   - `obj.method(...)` -> `method` (last attribute segment)\n *   - `mod.sub.fn(...)` -> `fn`\n * Anything else (subscripts, calls of calls, lambdas) yields null and the call\n * is dropped, matching the JS extractor's \"best-effort name\" stance.\n */\nfunction extractCalleeName(node: SyntaxNode, source: string): string | null {\n  if (node.type === \"identifier\") {\n    return nodeText(node, source);\n  }\n  if (node.type === \"attribute\") {\n    const attr = node.childForFieldName(\"attribute\");\n    if (attr && attr.type === \"identifier\") return nodeText(attr, source);\n    return null;\n  }\n  return null;\n}\n\n/**\n * Walk up the parent chain until we hit a function/class definition whose name\n * we recorded during Pass 1. Returns the symbol's id, or null if the call\n * sits at module scope.\n */\nfunction findEnclosingPythonSymbolId(\n  node: SyntaxNode,\n  localSymbols: Map<string, string>,\n  source: string,\n): string | null {\n  let cursor: SyntaxNode | null = node.parent;\n  while (cursor) {\n    if (cursor.type === \"function_definition\" || cursor.type === \"class_definition\") {\n      const nameNode = cursor.childForFieldName(\"name\");\n      if (nameNode) {\n        const id = localSymbols.get(nodeText(nameNode, source));\n        if (id) return id;\n      }\n    }\n    cursor = cursor.parent;\n  }\n  return null;\n}\n\nfunction sha1(text: string): string {\n  return createHash(\"sha1\").update(text).digest(\"hex\");\n}\n","import Parser from \"web-tree-sitter\";\n\ntype SyntaxNode = Parser.SyntaxNode;\nimport { type GraphNode, type Language, makeNodeId } from \"@codegraph/shared\";\nimport { endLine, findChildByType, nodeText, startLine, walk } from \"../walker.js\";\n\nconst EXPRESS_METHODS = new Set([\n  \"get\",\n  \"post\",\n  \"put\",\n  \"patch\",\n  \"delete\",\n  \"options\",\n  \"head\",\n  \"all\",\n  \"use\",\n]);\n\nconst HTTP_VERBS = new Set([\n  \"GET\",\n  \"POST\",\n  \"PUT\",\n  \"PATCH\",\n  \"DELETE\",\n  \"OPTIONS\",\n  \"HEAD\",\n]);\n\nexport interface DetectRoutesInput {\n  repoId: string;\n  relativePath: string;\n  absolutePath: string;\n  fileId: string;\n  rootNode: SyntaxNode;\n  source: string;\n  language: Language;\n}\n\n/**\n * Returns Route nodes for:\n *   1. Express `app.get('/x', handler)` / `router.post(...)` patterns.\n *   2. Next.js App Router `app/**\\/route.ts` exports (`GET`, `POST`, ...).\n *   3. Next.js Pages Router `pages/api/**` default exports.\n */\nexport function detectRoutes(input: DetectRoutesInput): GraphNode[] {\n  return [\n    ...detectExpressRoutes(input),\n    ...detectNextAppRouterRoutes(input),\n    ...detectNextPagesApiRoutes(input),\n  ];\n}\n\nfunction detectExpressRoutes(input: DetectRoutesInput): GraphNode[] {\n  const out: GraphNode[] = [];\n  for (const node of walk(input.rootNode)) {\n    if (node.type !== \"call_expression\") continue;\n    const callee = node.childForFieldName(\"function\");\n    if (!callee || callee.type !== \"member_expression\") continue;\n    const obj = callee.childForFieldName(\"object\");\n    const prop = callee.childForFieldName(\"property\");\n    if (!obj || !prop) continue;\n    const method = nodeText(prop, input.source).toLowerCase();\n    if (!EXPRESS_METHODS.has(method)) continue;\n    const args = node.childForFieldName(\"arguments\");\n    if (!args) continue;\n    const firstArg = args.namedChild(0);\n    if (!firstArg || firstArg.type !== \"string\") continue;\n    const routePath = stripQuotes(nodeText(firstArg, input.source));\n    if (!routePath.startsWith(\"/\")) continue;\n    const line = startLine(node);\n    const name = `${method.toUpperCase()} ${routePath}`;\n    out.push({\n      id: makeNodeId({\n        repoId: input.repoId,\n        kind: \"Route\",\n        path: input.relativePath,\n        name,\n        line,\n      }),\n      kind: \"Route\",\n      repoId: input.repoId,\n      name,\n      path: input.relativePath,\n      lineStart: line,\n      lineEnd: endLine(node),\n      method: method.toUpperCase(),\n      routePath,\n      framework: \"express\",\n    });\n  }\n  return out;\n}\n\nfunction detectNextAppRouterRoutes(input: DetectRoutesInput): GraphNode[] {\n  if (!/(^|\\/)app\\/.+\\/route\\.(ts|tsx|js|jsx|mjs|cjs)$/.test(input.relativePath)) return [];\n  const routePath = appRoutePathFor(input.relativePath);\n  const out: GraphNode[] = [];\n  for (const node of walk(input.rootNode)) {\n    if (node.type !== \"export_statement\") continue;\n    // `export async function GET(...)` or `export const GET = ...`\n    const decl = findChildByType(node, \"function_declaration\") ?? findChildByType(node, \"lexical_declaration\");\n    if (!decl) continue;\n    const name = extractTopLevelName(decl, input.source);\n    if (!name || !HTTP_VERBS.has(name)) continue;\n    const line = startLine(node);\n    out.push({\n      id: makeNodeId({\n        repoId: input.repoId,\n        kind: \"Route\",\n        path: input.relativePath,\n        name: `${name} ${routePath}`,\n        line,\n      }),\n      kind: \"Route\",\n      repoId: input.repoId,\n      name: `${name} ${routePath}`,\n      path: input.relativePath,\n      lineStart: line,\n      lineEnd: endLine(node),\n      method: name,\n      routePath,\n      framework: \"next-app\",\n    });\n  }\n  return out;\n}\n\nfunction detectNextPagesApiRoutes(input: DetectRoutesInput): GraphNode[] {\n  if (!/(^|\\/)pages\\/api\\//.test(input.relativePath)) return [];\n  const routePath = pagesApiPathFor(input.relativePath);\n  // Pages API uses a default-exported handler that responds to all verbs.\n  for (const node of walk(input.rootNode)) {\n    if (node.type !== \"export_statement\") continue;\n    const text = nodeText(node, input.source);\n    if (!/default/.test(text)) continue;\n    const line = startLine(node);\n    return [\n      {\n        id: makeNodeId({\n          repoId: input.repoId,\n          kind: \"Route\",\n          path: input.relativePath,\n          name: `ANY ${routePath}`,\n          line,\n        }),\n        kind: \"Route\",\n        repoId: input.repoId,\n        name: `ANY ${routePath}`,\n        path: input.relativePath,\n        lineStart: line,\n        lineEnd: endLine(node),\n        method: \"ANY\",\n        routePath,\n        framework: \"next-pages\",\n      },\n    ];\n  }\n  return [];\n}\n\nfunction stripQuotes(s: string): string {\n  return s.replace(/^[\"'`]/, \"\").replace(/[\"'`]$/, \"\");\n}\n\nfunction extractTopLevelName(decl: SyntaxNode, source: string): string | null {\n  if (decl.type === \"function_declaration\") {\n    const name = decl.childForFieldName(\"name\");\n    return name ? nodeText(name, source) : null;\n  }\n  if (decl.type === \"lexical_declaration\") {\n    const declarator = findChildByType(decl, \"variable_declarator\");\n    if (!declarator) return null;\n    const name = declarator.childForFieldName(\"name\");\n    return name ? nodeText(name, source) : null;\n  }\n  return null;\n}\n\nfunction appRoutePathFor(relativePath: string): string {\n  // app/(group)/users/[id]/route.ts -> /users/:id\n  const idx = relativePath.indexOf(\"app/\");\n  const tail = idx >= 0 ? relativePath.slice(idx + \"app/\".length) : relativePath;\n  const segments = tail\n    .replace(/\\/route\\.[^/]+$/, \"\")\n    .split(\"/\")\n    .filter((seg) => seg.length > 0 && !/^\\(.*\\)$/.test(seg)) // strip route groups\n    .map((seg) => seg.replace(/^\\[\\.\\.\\.(.+)\\]$/, \":$1*\").replace(/^\\[(.+)\\]$/, \":$1\"));\n  return `/${segments.join(\"/\")}` || \"/\";\n}\n\nfunction pagesApiPathFor(relativePath: string): string {\n  const idx = relativePath.indexOf(\"pages/api/\");\n  const tail = idx >= 0 ? relativePath.slice(idx + \"pages/api/\".length) : relativePath;\n  const base = tail.replace(/\\.[^/.]+$/, \"\");\n  const segments = base\n    .split(\"/\")\n    .filter((seg) => seg.length > 0)\n    .map((seg) =>\n      seg\n        .replace(/^\\[\\.\\.\\.(.+)\\]$/, \":$1*\")\n        .replace(/^\\[(.+)\\]$/, \":$1\")\n        .replace(/^index$/, \"\"),\n    )\n    .filter((seg) => seg.length > 0);\n  return `/api/${segments.join(\"/\")}`.replace(/\\/+$/, \"\") || \"/api\";\n}\n","import path from \"node:path\";\nimport { type GraphEdge, type GraphNode, makeFileId } from \"@codegraph/shared\";\n\nexport interface ResolveInput {\n  repoId: string;\n  /** All nodes from all parsed files in the current index pass. */\n  nodes: GraphNode[];\n  /** All edges with `unresolvedTargetName` set on IMPORTS/CALLS/RENDERS/INHERITS. */\n  edges: GraphEdge[];\n  /** Repo paths of files that successfully parsed, used for IMPORTS resolution. */\n  knownFilePaths: Set<string>;\n  /**\n   * Optional TypeScript-style path aliases extracted from `tsconfig.json` /\n   * `jsconfig.json`. When supplied, imports that don't start with `.` or `/` are\n   * matched against the alias table before being dropped as \"third-party\".\n   */\n  tsconfigPaths?: TsconfigPaths;\n}\n\n/**\n * Subset of TS `compilerOptions` we use for resolution. `baseUrl` is repo-relative\n * (POSIX), `paths` maps an alias spec like `\"@/*\"` to one or more replacements like\n * `[\"src/*\"]`. The replacement targets are also repo-relative.\n */\nexport interface TsconfigPaths {\n  baseUrl: string;\n  paths: Record<string, string[]>;\n}\n\nexport interface ResolveResult {\n  resolved: GraphEdge[];\n  dropped: number;\n}\n\nconst EXTENSIONS = [\".ts\", \".tsx\", \".js\", \".jsx\", \".mjs\", \".cjs\", \".py\"];\n\n/**\n * Files that count as a \"directory import\" target. JS uses `index.<ext>`;\n * Python uses `__init__.py`. We try all of these for every candidate stem\n * regardless of language: collisions are impossible because the file sets\n * never overlap, and keeping one list avoids threading the source file's\n * language through every resolver call.\n */\nconst DIRECTORY_INDEX_FILES = [\n  \"index.ts\",\n  \"index.tsx\",\n  \"index.js\",\n  \"index.jsx\",\n  \"index.mjs\",\n  \"index.cjs\",\n  \"__init__.py\",\n];\n\n/**\n * Second pass that converts the *names* captured during single-file\n * extraction into concrete `toId` values. Edges whose target can't be\n * resolved are dropped silently (and counted in `dropped`) - they\n * commonly point at npm packages or unindexed code.\n */\nexport function resolveEdges(input: ResolveInput): ResolveResult {\n  // Symbol lookup by name. When the same name appears in multiple files,\n  // the first one wins; Phase 4's LSP integration will replace this with\n  // type-aware resolution.\n  const byName = new Map<string, string>();\n  // Function/class/component/etc -> first node id with that name.\n  for (const n of input.nodes) {\n    if (n.kind === \"File\") continue;\n    if (!byName.has(n.name)) byName.set(n.name, n.id);\n  }\n\n  const out: GraphEdge[] = [];\n  let dropped = 0;\n\n  for (const edge of input.edges) {\n    if (edge.toId) {\n      out.push(edge);\n      continue;\n    }\n    if (!edge.unresolvedTargetName) {\n      dropped++;\n      continue;\n    }\n    if (edge.kind === \"IMPORTS\") {\n      const resolved = resolveImportPath({\n        repoId: input.repoId,\n        fromPath: edge.fromPath ?? \"\",\n        spec: edge.unresolvedTargetName,\n        known: input.knownFilePaths,\n        ...(input.tsconfigPaths ? { tsconfigPaths: input.tsconfigPaths } : {}),\n      });\n      if (!resolved) {\n        dropped++;\n        continue;\n      }\n      const targetId = makeFileId({ repoId: input.repoId, path: resolved });\n      const { unresolvedTargetName: _unused, ...rest } = edge;\n      out.push({ ...rest, toId: targetId, toPath: resolved });\n      continue;\n    }\n    const targetId = byName.get(edge.unresolvedTargetName);\n    if (!targetId) {\n      dropped++;\n      continue;\n    }\n    const { unresolvedTargetName: _unused, ...rest } = edge;\n    out.push({ ...rest, toId: targetId });\n  }\n\n  return { resolved: out, dropped };\n}\n\ninterface ResolveImportInput {\n  repoId: string;\n  fromPath: string;\n  spec: string;\n  known: Set<string>;\n  tsconfigPaths?: TsconfigPaths;\n}\n\nfunction resolveImportPath(input: ResolveImportInput): string | null {\n  const { fromPath, spec, known, tsconfigPaths } = input;\n  // Relative or rooted spec: classic node-style resolution.\n  if (spec.startsWith(\".\") || spec.startsWith(\"/\")) {\n    const baseDir = path.posix.dirname(toPosix(fromPath));\n    const joined = path.posix.normalize(path.posix.join(baseDir, toPosix(spec)));\n    return firstMatchingCandidate(joined, known);\n  }\n  // Non-relative spec: maybe a TS path alias (`@/foo`, `~/foo`, `components/Foo`)?\n  // Walk the alias table, longest pattern first, and try every replacement.\n  if (tsconfigPaths) {\n    const candidates = expandAliasCandidates(spec, tsconfigPaths);\n    for (const c of candidates) {\n      const resolved = firstMatchingCandidate(c, known);\n      if (resolved) return resolved;\n    }\n  }\n  // Final fallback: treat the spec as a repo-root-relative path. This catches\n  // Python absolute imports (`from app.services import auth` was rewritten to\n  // `app/services` by the Python extractor) and any in-repo JS imports that\n  // bypassed tsconfig aliases. Third-party packages still fall through to\n  // null because their stems don't match any indexed file.\n  const fromRoot = firstMatchingCandidate(toPosix(spec), known);\n  if (fromRoot) return fromRoot;\n  return null;\n}\n\n/**\n * For a literal repo-relative path (no extension assumed), try the literal, every\n * known source extension, and a `/index.<ext>` directory entry. Modern ESM commonly\n * writes `./foo.js` even when the source is `./foo.ts`, so we strip an existing\n * extension before trying each candidate.\n */\nfunction firstMatchingCandidate(joined: string, known: Set<string>): string | null {\n  const candidates: string[] = [joined];\n  const ext = path.posix.extname(joined);\n  const stem = ext ? joined.slice(0, -ext.length) : joined;\n  for (const e of EXTENSIONS) candidates.push(`${stem}${e}`);\n  for (const indexFile of DIRECTORY_INDEX_FILES) candidates.push(`${stem}/${indexFile}`);\n  for (const c of candidates) {\n    if (known.has(c)) return c;\n  }\n  return null;\n}\n\n/**\n * Expand a non-relative import against the tsconfig `paths` table. Patterns ending in\n * `/*` are treated as prefix matches and the trailing slice is grafted onto each\n * replacement; bare patterns are exact-match aliases. Replacements are joined with\n * `baseUrl` (also repo-relative) so we end up with repo-relative POSIX paths to feed\n * into `firstMatchingCandidate`.\n *\n * Longest pattern wins, matching the TS compiler's precedence rule.\n */\nfunction expandAliasCandidates(spec: string, cfg: TsconfigPaths): string[] {\n  const sortedPatterns = Object.keys(cfg.paths).sort((a, b) => b.length - a.length);\n  const out: string[] = [];\n  for (const pattern of sortedPatterns) {\n    const replacements = cfg.paths[pattern] ?? [];\n    if (pattern.endsWith(\"/*\")) {\n      const prefix = pattern.slice(0, -1); // keep trailing \"/\"\n      if (!spec.startsWith(prefix)) continue;\n      const tail = spec.slice(prefix.length);\n      for (const r of replacements) {\n        const rTail = r.endsWith(\"/*\") ? r.slice(0, -1) : r.endsWith(\"*\") ? r.slice(0, -1) : r;\n        const joined = path.posix.normalize(\n          path.posix.join(toPosix(cfg.baseUrl), `${rTail}${tail}`),\n        );\n        out.push(joined);\n      }\n    } else if (spec === pattern) {\n      for (const r of replacements) {\n        const joined = path.posix.normalize(path.posix.join(toPosix(cfg.baseUrl), r));\n        out.push(joined);\n      }\n    }\n  }\n  return out;\n}\n\nfunction toPosix(p: string): string {\n  return p.split(path.sep).join(\"/\");\n}\n","import { readFile, stat } from \"node:fs/promises\";\nimport { cpus } from \"node:os\";\nimport { join } from \"node:path\";\nimport { createHash } from \"node:crypto\";\nimport ignore from \"ignore\";\nimport type { GraphDb, UpsertEdgeInput, UpsertNodeInput } from \"@codegraph/graph-db\";\nimport type { LlmRouter } from \"@codegraph/llm-router\";\nimport type { GraphEdge, GraphNode } from \"@codegraph/shared\";\nimport { embedNodes, type EmbeddedNode } from \"./embedder.js\";\nimport { extractFile, resolveEdges } from \"./extractors/index.js\";\nimport { loadTsconfigPaths } from \"./tsconfig.js\";\nimport { detectLanguage } from \"./parser.js\";\nimport { walkRepo } from \"./repo-walker.js\";\n\nexport interface IndexRepoOptions {\n  repoId: string;\n  repoPath: string;\n  graphDb: GraphDb;\n  router?: LlmRouter;\n  /** Parallelism for in-process parsing. Defaults to `os.cpus().length`. */\n  parallelism?: number;\n  /** Set to false in tests to skip the (slow) embedding network call. */\n  skipEmbeddings?: boolean;\n  onProgress?: (e: ProgressEvent) => void;\n}\n\nexport type ProgressEvent =\n  | { type: \"walk\"; files: number }\n  | { type: \"parse\"; parsed: number; total: number }\n  | { type: \"embed\"; embedded: number; total: number }\n  | { type: \"upsert\"; nodes: number; edges: number };\n\nexport interface IndexResult {\n  durationMs: number;\n  parsedFiles: number;\n  failedFiles: number;\n  nodes: number;\n  edges: number;\n  embeddings: number;\n  droppedEdges: number;\n}\n\n/**\n * Top-level indexer. Sequence:\n *   1. Walk the repo (gitignore-aware), classify by language.\n *   2. Parse + extract per file with bounded concurrency.\n *   3. Resolve cross-file edge targets (CALLS / RENDERS / IMPORTS / INHERITS).\n *   4. Embed every non-File node so the vectors are ready before we touch the graph.\n *   5. Wipe the repo's slice and write nodes (with embeddings folded into the property\n *      map of the CREATE) + edges.\n *\n * Why embeddings are folded into the initial CREATE rather than back-filled via\n * `SET n.embedding = ...`: Kuzu 0.11.x rejects writes to a vector-indexed column\n * (kuzudb/kuzu#5965), so codegraph v0.1.x deliberately skips the HNSW index and uses\n * brute-force `array_cosine_similarity` for semantic search. Putting the vector in the\n * CREATE clause makes the path identical whether or not embeddings exist.\n *\n * Phase 1 is a full-repo index. Incremental re-index lands in Phase 3 with the webhook\n * flow.\n */\nexport async function indexRepo(opts: IndexRepoOptions): Promise<IndexResult> {\n  const start = Date.now();\n  const parallelism = Math.max(1, opts.parallelism ?? cpus().length);\n\n  const files = await walkRepo(opts.repoPath);\n  opts.onProgress?.({ type: \"walk\", files: files.length });\n\n  const parsable = files\n    .map((rel) => ({ rel, language: detectLanguage(rel) }))\n    .filter((f): f is { rel: string; language: NonNullable<ReturnType<typeof detectLanguage>> } =>\n      f.language !== null,\n    );\n\n  const knownFilePaths = new Set(parsable.map((f) => f.rel));\n\n  const allNodes: GraphNode[] = [];\n  const allEdges: GraphEdge[] = [];\n  let parsedCount = 0;\n  let failed = 0;\n\n  await runWithConcurrency(parsable, parallelism, async (entry) => {\n    const abs = join(opts.repoPath, entry.rel);\n    try {\n      const source = await readFile(abs, \"utf8\");\n      const result = await extractFile({\n        repoId: opts.repoId,\n        relativePath: entry.rel,\n        absolutePath: abs,\n        language: entry.language,\n        source,\n      });\n      allNodes.push(result.file, ...result.nodes);\n      allEdges.push(...result.edges);\n    } catch (_err) {\n      // Parse failures are non-fatal; we surface the count in IndexResult so\n      // CI can flag if it spikes.\n      failed++;\n    } finally {\n      parsedCount++;\n      opts.onProgress?.({ type: \"parse\", parsed: parsedCount, total: parsable.length });\n    }\n  });\n\n  const tsconfigPaths = await loadTsconfigPaths(opts.repoPath);\n  const { resolved, dropped } = resolveEdges({\n    repoId: opts.repoId,\n    nodes: allNodes,\n    edges: allEdges,\n    knownFilePaths,\n    ...(tsconfigPaths ? { tsconfigPaths } : {}),\n  });\n\n  let embeddedById: Map<string, EmbeddedNode> = new Map();\n  if (!opts.skipEmbeddings && opts.router) {\n    const embedded = await embedNodes(allNodes, {\n      router: opts.router,\n      onBatch: ({ embedded, total }) =>\n        opts.onProgress?.({ type: \"embed\", embedded, total }),\n    });\n    embeddedById = new Map(embedded.map((e) => [e.id, e]));\n  }\n\n  const nodePayload: UpsertNodeInput[] = allNodes.map((n) => {\n    const e = embeddedById.get(n.id);\n    const base = n as unknown as UpsertNodeInput;\n    if (!e) return base;\n    return { ...base, embedding: e.embedding, embeddingNamespace: e.embeddingNamespace };\n  });\n\n  // Wipe the repo's existing slice so the upcoming CREATE doesn't collide on primary keys.\n  await opts.graphDb.deleteByRepo(opts.repoId);\n  await opts.graphDb.upsertNodes(nodePayload);\n  await opts.graphDb.upsertEdges(resolved as unknown as UpsertEdgeInput[]);\n  opts.onProgress?.({ type: \"upsert\", nodes: allNodes.length, edges: resolved.length });\n\n  const embeddingCount = embeddedById.size;\n\n  return {\n    durationMs: Date.now() - start,\n    parsedFiles: parsedCount - failed,\n    failedFiles: failed,\n    nodes: allNodes.length,\n    edges: resolved.length,\n    embeddings: embeddingCount,\n    droppedEdges: dropped,\n  };\n}\n\n/**\n * Lightweight concurrency runner. We deliberately avoid `workerpool` here\n * because tree-sitter wasm initialization in worker_threads requires per-\n * worker grammar reloads, which is a regression for the small repos this\n * tool targets in Phase 1. Switching to true OS threads is a Phase 4\n * optimization once profiling shows we're CPU-bound on multi-million-LOC\n * repos.\n */\nasync function runWithConcurrency<T>(\n  items: readonly T[],\n  concurrency: number,\n  fn: (item: T) => Promise<void>,\n): Promise<void> {\n  let cursor = 0;\n  const runners = Array.from({ length: Math.min(concurrency, items.length) }, async () => {\n    while (cursor < items.length) {\n      const i = cursor++;\n      const item = items[i];\n      if (item === undefined) continue;\n      await fn(item);\n    }\n  });\n  await Promise.all(runners);\n}\n\n/** Stable content hash used to skip re-parsing unchanged files later. */\nexport function hashFileContent(source: string): string {\n  return createHash(\"sha1\").update(source).digest(\"hex\");\n}\n\n/** Helper for callers who only want a stat-based size. */\nexport async function fileSize(absolutePath: string): Promise<number> {\n  const s = await stat(absolutePath);\n  return s.size;\n}\n\n/** Used by smoke tests / docs to verify that ignore globs apply. */\nexport function buildIgnoreFilter(patterns: readonly string[]) {\n  return ignore().add(patterns as string[]);\n}\n","import type { LlmRouter } from \"@codegraph/llm-router\";\nimport type { GraphNode } from \"@codegraph/shared\";\n\nexport interface EmbedderOptions {\n  router: LlmRouter;\n  /** Max items per `embed()` call. Defaults to 100 per the build plan. */\n  batchSize?: number;\n  /** Hook for progress reporting from the CLI. */\n  onBatch?: (info: { batchIndex: number; total: number; embedded: number }) => void;\n}\n\nexport interface EmbeddedNode {\n  id: string;\n  embedding: number[];\n  embeddingNamespace: string;\n}\n\n/**\n * Embedding input format from the build plan:\n *   `${kind} ${name}\\n${signature}\\n${leadingComment}`\n *\n * File nodes are excluded - we embed *symbols*, not raw files.\n */\nexport function buildEmbeddingInput(node: GraphNode): string {\n  const sig = node.signature ?? \"\";\n  const comment = node.leadingComment ?? \"\";\n  return `${node.kind} ${node.name}\\n${sig}\\n${comment}`.trim();\n}\n\nexport async function embedNodes(\n  nodes: GraphNode[],\n  opts: EmbedderOptions,\n): Promise<EmbeddedNode[]> {\n  const batchSize = opts.batchSize ?? 100;\n  const candidates = nodes.filter((n) => n.kind !== \"File\");\n  const totalSymbols = candidates.length;\n  const result: EmbeddedNode[] = [];\n  const namespace = `${opts.router.config.embeddingNamespace.provider}:${opts.router.config.embeddingNamespace.model}:${opts.router.config.embeddingNamespace.dimension}`;\n  for (let i = 0; i < candidates.length; i += batchSize) {\n    const slice = candidates.slice(i, i + batchSize);\n    const inputs = slice.map(buildEmbeddingInput);\n    const vectors = await opts.router.embed(inputs);\n    for (let j = 0; j < slice.length; j++) {\n      const node = slice[j];\n      const vec = vectors[j];\n      if (!node || !vec) continue;\n      result.push({ id: node.id, embedding: vec, embeddingNamespace: namespace });\n    }\n    opts.onBatch?.({\n      batchIndex: i / batchSize,\n      total: totalSymbols,\n      embedded: result.length,\n    });\n  }\n  return result;\n}\n","import { readFile } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport type { TsconfigPaths } from \"./extractors/resolve.js\";\n\n/**\n * Best-effort loader for a repo's TypeScript path-alias table. We deliberately do *not*\n * pull in the `typescript` package or `tsconfig-paths`: we only need the `compilerOptions\n * .baseUrl` + `compilerOptions.paths` fields, and we can parse those out of the JSON\n * ourselves. Real tsconfigs allow comments and trailing commas (JSONC), so we strip\n * those before `JSON.parse`.\n *\n * Resolution order: `tsconfig.json`, then `jsconfig.json` as a fallback for JS-only\n * repos. We do NOT follow the `extends` chain - if a project splits its config across\n * multiple files we'll miss aliases declared in a parent. This is acceptable for v0.1.x\n * and can be made recursive later.\n *\n * Returns `null` when no usable config is found, the file can't be parsed, or it has no\n * `paths` entries.\n */\nexport async function loadTsconfigPaths(repoRoot: string): Promise<TsconfigPaths | null> {\n  for (const name of [\"tsconfig.json\", \"jsconfig.json\"]) {\n    const raw = await readIfExists(path.join(repoRoot, name));\n    if (!raw) continue;\n    let parsed: { compilerOptions?: { baseUrl?: string; paths?: Record<string, string[]> } };\n    try {\n      parsed = JSON.parse(stripJsonComments(raw)) as typeof parsed;\n    } catch {\n      continue;\n    }\n    const co = parsed.compilerOptions ?? {};\n    const paths = co.paths ?? {};\n    if (Object.keys(paths).length === 0) continue;\n    const baseUrl = (co.baseUrl ?? \".\").trim();\n    return {\n      baseUrl: toPosix(baseUrl),\n      paths,\n    };\n  }\n  return null;\n}\n\nasync function readIfExists(filePath: string): Promise<string | null> {\n  try {\n    return await readFile(filePath, \"utf8\");\n  } catch {\n    return null;\n  }\n}\n\n/**\n * Strip line + block comments and trailing commas. Naïve but enough for tsconfig: we\n * preserve string contents (including any `//` or `/*` inside them) by walking the\n * source character-by-character with a tiny state machine.\n */\nfunction stripJsonComments(input: string): string {\n  let out = \"\";\n  let i = 0;\n  let inString = false;\n  let stringChar = \"\";\n  while (i < input.length) {\n    const c = input[i];\n    const next = input[i + 1];\n    if (inString) {\n      out += c;\n      if (c === \"\\\\\" && next !== undefined) {\n        out += next;\n        i += 2;\n        continue;\n      }\n      if (c === stringChar) inString = false;\n      i++;\n      continue;\n    }\n    if (c === '\"' || c === \"'\") {\n      inString = true;\n      stringChar = c;\n      out += c;\n      i++;\n      continue;\n    }\n    if (c === \"/\" && next === \"/\") {\n      while (i < input.length && input[i] !== \"\\n\") i++;\n      continue;\n    }\n    if (c === \"/\" && next === \"*\") {\n      i += 2;\n      while (i < input.length && !(input[i] === \"*\" && input[i + 1] === \"/\")) i++;\n      i += 2;\n      continue;\n    }\n    out += c;\n    i++;\n  }\n  return removeTrailingCommas(out);\n}\n\nfunction removeTrailingCommas(s: string): string {\n  return s.replace(/,\\s*([}\\]])/g, \"$1\");\n}\n\nfunction toPosix(p: string): string {\n  return p.split(path.sep).join(\"/\");\n}\n","import { readFile, readdir, stat } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport ignore, { type Ignore } from \"ignore\";\n\n/**\n * Directories we never traverse regardless of .gitignore contents. Mix of:\n * - VCS / IDE metadata (`.git`, `.idea`, `.vscode`)\n * - JS/TS build + tool caches (`node_modules`, `dist`, `build`, `out`, `.next`,\n *   `.turbo`, `.cache`, `coverage`, `.parcel-cache`, `.svelte-kit`, `.nuxt`)\n * - Python virtualenvs and caches (`venv`, `.venv`, `env`, `.env.local`, `__pycache__`,\n *   `site-packages`, `.pytest_cache`, `.mypy_cache`, `.ruff_cache`, `.tox`, `.eggs`)\n * - Rust / Go / Java / Swift build dirs (`target`, `vendor`, `Pods`, `DerivedData`)\n * - Test-runner artifacts and OS metadata (`.nyc_output`, `__snapshots__` we keep\n *   because they're useful; `.DS_Store` files filter naturally on read).\n *\n * Without these, walking a real-world repo (especially one with a Python `venv/` or\n * a checked-in `vendor/`) will pull in tens of thousands of irrelevant files and tank\n * indexing time + graph signal-to-noise.\n */\nconst ALWAYS_SKIP_DIRS = new Set([\n  \".git\",\n  \".hg\",\n  \".svn\",\n  \"node_modules\",\n  \".next\",\n  \".nuxt\",\n  \".svelte-kit\",\n  \"dist\",\n  \"build\",\n  \"out\",\n  \".turbo\",\n  \".cache\",\n  \".parcel-cache\",\n  \"coverage\",\n  \".nyc_output\",\n  \".idea\",\n  \".vscode\",\n  \".vs\",\n  \"venv\",\n  \".venv\",\n  \"env\",\n  \"__pycache__\",\n  \"site-packages\",\n  \".pytest_cache\",\n  \".mypy_cache\",\n  \".ruff_cache\",\n  \".tox\",\n  \".eggs\",\n  \"target\",\n  \"vendor\",\n  \"Pods\",\n  \"DerivedData\",\n  \".gradle\",\n  \".terraform\",\n]);\n\n/**\n * DFS over `root`. Honors the *root* `.gitignore` and the always-skip\n * directory set above. Nested `.gitignore` files (e.g. one inside\n * `packages/foo/`) are intentionally ignored for Phase 1 simplicity -\n * monorepos hit this limitation rarely because the root file usually\n * captures shared exclusions. Returns repo-relative POSIX paths.\n */\nexport async function walkRepo(root: string): Promise<string[]> {\n  const base = path.resolve(root);\n  const matcher = ignore();\n  await loadGitignoreInto(matcher, base);\n  const out: string[] = [];\n  await walkDir(base, \"\", matcher, out);\n  return out.sort();\n}\n\nasync function walkDir(\n  absDir: string,\n  relDir: string,\n  ig: Ignore,\n  out: string[],\n): Promise<void> {\n  let entries: import(\"node:fs\").Dirent<string>[];\n  try {\n    entries = await readdir(absDir, { withFileTypes: true, encoding: \"utf8\" });\n  } catch {\n    return;\n  }\n  for (const entry of entries) {\n    const name = entry.name;\n    const rel = relDir ? `${relDir}/${name}` : name;\n    const abs = path.join(absDir, name);\n    if (entry.isDirectory()) {\n      if (ALWAYS_SKIP_DIRS.has(name)) continue;\n      // `ignore` expects a trailing slash to test directories.\n      if (ig.ignores(`${rel}/`)) continue;\n      await walkDir(abs, rel, ig, out);\n    } else if (entry.isFile()) {\n      if (ig.ignores(rel)) continue;\n      const s = await safeStat(abs);\n      if (s && s.size > 2_000_000) continue;\n      out.push(rel);\n    }\n  }\n}\n\nasync function loadGitignoreInto(ig: Ignore, absDir: string): Promise<void> {\n  const file = path.join(absDir, \".gitignore\");\n  try {\n    const text = await readFile(file, \"utf8\");\n    ig.add(text);\n  } catch {\n    // Missing or unreadable .gitignore - fine.\n  }\n}\n\nasync function safeStat(p: string): Promise<Awaited<ReturnType<typeof stat>> | null> {\n  try {\n    return await stat(p);\n  } catch {\n    return null;\n  }\n}\n","import { createHash } from \"node:crypto\";\nimport path from \"node:path\";\n\n/**\n * Deterministic, human-readable repo identifier based on the absolute path.\n * Falls back to a short hash for collisions or weird path characters.\n *\n *   /Users/x/Code/codegraph -> codegraph-aab12cd3\n */\nexport function repoIdFromPath(absPath: string): string {\n  const base = path.basename(path.resolve(absPath));\n  const sha = createHash(\"sha1\").update(path.resolve(absPath)).digest(\"hex\").slice(0, 8);\n  const safe = base.replace(/[^A-Za-z0-9_-]/g, \"_\");\n  return `${safe}-${sha}`;\n}\n","import { spawn } from \"node:child_process\";\nimport path from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport { confirm, input, password, select } from \"@inquirer/prompts\";\nimport { createLlmRouter, namespaceLabel } from \"@codegraph/llm-router\";\nimport { resolveServerConfig } from \"@codegraph/mcp-server\";\nimport { LLM_PRESETS } from \"@codegraph/shared\";\nimport boxen from \"boxen\";\nimport kleur from \"kleur\";\nimport { configPath, loadConfig, saveConfig } from \"../config-store.js\";\nimport { detectOllama, LOCAL_MODELS } from \"../ollama.js\";\nimport { makeSpinner, printBanner } from \"../ui.js\";\n\nconst TOTAL_STEPS = 6;\n\n/**\n * Interactive onboarding wizard. Walks a brand-new user from \"I just installed codegraph\"\n * to \"my AI assistant is calling MCP tools against my repo\" without forcing them to\n * read README files. Designed to be the first command we point new users at.\n *\n * Flow: welcome → env check → LLM setup → live credential test → optional index →\n * MCP server boot instructions → AI client config with real bearer token → celebrate.\n */\nexport async function runInitCommand(): Promise<void> {\n  printWelcome();\n  const start = await confirm({ message: \"Ready to get started?\", default: true });\n  if (!start) {\n    console.log(kleur.dim(\"Aborted. Run `codegraph init` again any time.\"));\n    return;\n  }\n\n  runEnvCheck();\n  await runLlmSetup();\n  await runLiveTest();\n  await runIndexStep();\n  const bearerToken = await runServeStep();\n  await runClientStep(bearerToken);\n  await runCelebration();\n}\n\nfunction printWelcome(): void {\n  printBanner();\n  const description = [\n    kleur.bold(\"CodeGraph\") +\n      \" parses your JS/TS repo with tree-sitter, stores nodes (Function, Class,\",\n    \"Route…) and edges (CALLS, IMPORTS, RENDERS…) in an embedded Kuzu graph with\",\n    \"vector embeddings, then runs a local MCP server your AI assistant can call.\",\n    \"\",\n    kleur.dim(\"This wizard will:\"),\n    `  ${kleur.cyan(\"1.\")} Configure an LLM provider (cloud or local)`,\n    `  ${kleur.cyan(\"2.\")} Verify your credentials with a live round-trip`,\n    `  ${kleur.cyan(\"3.\")} Index this repo into the graph`,\n    `  ${kleur.cyan(\"4.\")} Show you how to boot the MCP server`,\n    `  ${kleur.cyan(\"5.\")} Print a copy-paste config for your AI client`,\n  ].join(\"\\n\");\n  process.stdout.write(\n    `${boxen(description, {\n      padding: 1,\n      margin: { top: 0, bottom: 1, left: 0, right: 0 },\n      borderStyle: \"round\",\n      borderColor: \"cyan\",\n      title: kleur.bold(\"Welcome\"),\n      titleAlignment: \"left\",\n    })}\\n`,\n  );\n}\n\nfunction stepHeader(n: number, label: string): void {\n  console.log();\n  console.log(\n    kleur.cyan(`──── Step ${n}/${TOTAL_STEPS}: ${kleur.bold(label)} ${\"─\".repeat(Math.max(4, 40 - label.length))}`),\n  );\n}\n\nfunction runEnvCheck(): void {\n  stepHeader(1, \"Environment check\");\n  const version = process.versions.node;\n  const major = Number(version.split(\".\")[0] ?? 0);\n  if (major < 20) {\n    console.log(`${kleur.red(\"✗\")}  node version  v${version} ${kleur.red(\"(codegraph requires >= 20)\")}`);\n    throw new Error(`Node ${version} is too old; install Node 20+ and re-run \\`codegraph init\\`.`);\n  }\n  console.log(`${kleur.green(\"✓\")}  node version  ${kleur.dim(`v${version}`)}`);\n}\n\n/**\n * Two-level LLM selection: local-zero-cost vs cloud. The local path drives a full\n * Ollama detection and guided setup flow; cloud mirrors the original behaviour.\n */\nasync function runLlmSetup(): Promise<void> {\n  stepHeader(2, \"LLM setup\");\n\n  const mode = await select({\n    message: \"How would you like to power CodeGraph?\",\n    choices: [\n      {\n        name: \"Local, zero cost\",\n        value: \"local\",\n        description:\n          \"Runs entirely on your laptop. No API keys. Uses Ollama (guided install).\",\n      },\n      {\n        name: \"Cloud provider\",\n        value: \"cloud\",\n        description: \"OpenAI, Anthropic, or Google. Better quality, requires an API key.\",\n      },\n    ],\n  });\n\n  if (mode === \"local\") {\n    await setupLocalOllama();\n  } else {\n    await setupCloudProvider();\n  }\n}\n\n/**\n * Detects Ollama state and guides the user through whichever recovery path is needed:\n * install, start, or model pull. Falls back to a custom-URL or cloud escape hatch if\n * the user can't or doesn't want to run Ollama.\n */\nasync function setupLocalOllama(): Promise<void> {\n  const spinner = makeSpinner(\"Detecting Ollama\").start();\n  let detection = await detectOllama();\n  spinner.stop();\n\n  // ── Not installed ──────────────────────────────────────────────────────────\n  if (detection.status === \"not-installed\") {\n    console.log();\n    console.log(kleur.yellow(\"  Ollama is not installed.\"));\n    console.log(`  ${kleur.cyan(\"→\")} Install from: ${kleur.underline(\"https://ollama.com\")}`);\n    console.log(`  ${kleur.dim(\"  Then run: ollama serve\")}`);\n    openUrl(\"https://ollama.com\");\n\n    const next = await select({\n      message: \"What would you like to do?\",\n      choices: [\n        { name: \"I just installed it — detect again\", value: \"retry\" },\n        { name: \"Use a custom local server (llama.cpp, LM Studio, vLLM…)\", value: \"custom\" },\n        { name: \"Switch to a cloud provider instead\", value: \"cloud\" },\n        { name: \"Skip for now (configure LLM later)\", value: \"skip\" },\n      ],\n    });\n    if (next === \"retry\") { await setupLocalOllama(); return; }\n    if (next === \"custom\") { await setupCustomUrl(); return; }\n    if (next === \"cloud\") { await setupCloudProvider(); return; }\n    console.log(kleur.yellow(\"! Skipped. Run `codegraph config llm set` to configure later.\"));\n    return;\n  }\n\n  // ── Installed but daemon not running ──────────────────────────────────────\n  if (detection.status === \"installed-not-running\") {\n    console.log();\n    console.log(kleur.yellow(\"  Ollama is installed but not running.\"));\n    console.log(`  Start it in another terminal: ${kleur.cyan(\"ollama serve\")}`);\n\n    while (true) {\n      const next = await select({\n        message: \"What would you like to do?\",\n        choices: [\n          { name: \"Retry (I started ollama serve)\", value: \"retry\" },\n          { name: \"Use a custom local server (llama.cpp, LM Studio, vLLM…)\", value: \"custom\" },\n          { name: \"Switch to a cloud provider instead\", value: \"cloud\" },\n          { name: \"Skip for now (configure LLM later)\", value: \"skip\" },\n        ],\n      });\n      if (next === \"custom\") { await setupCustomUrl(); return; }\n      if (next === \"cloud\") { await setupCloudProvider(); return; }\n      if (next === \"skip\") {\n        console.log(kleur.yellow(\"! Skipped. Run `codegraph config llm set` to configure later.\"));\n        return;\n      }\n      const retrySpinner = makeSpinner(\"Checking Ollama\").start();\n      detection = await detectOllama();\n      retrySpinner.stop();\n      if (detection.status === \"ready\" || detection.status === \"running-no-models\") break;\n      console.log(kleur.red(\"  ✗  Ollama still not reachable on :11434.\"));\n    }\n  }\n\n  // ── Running but required models missing — pull them ───────────────────────\n  if (detection.status === \"running-no-models\") {\n    console.log(kleur.dim(`  Ollama is running. Pulling required models…`));\n    try {\n      await pullOllamaModels();\n    } catch (err) {\n      console.log(\n        kleur.yellow(`! Pull failed: ${err instanceof Error ? err.message : String(err)}`),\n      );\n      console.log(kleur.dim(\"  You can pull manually: ollama pull qwen2.5-coder:1.5b && ollama pull nomic-embed-text\"));\n    }\n  }\n\n  if (detection.status === \"ready\") {\n    console.log(`${kleur.green(\"✓\")}  Ollama ready, required models present`);\n  }\n\n  // ── Save preset ───────────────────────────────────────────────────────────\n  const config = await loadConfig();\n  const lookup = LLM_PRESETS[\"local-ollama\"]!;\n  config.llm = { ...config.llm, ...lookup };\n  config.llm.baseUrl = undefined;\n  await saveConfig(config);\n  console.log(`${kleur.green(\"✓\")}  preset saved   ${kleur.dim('\"local-ollama\" → ' + configPath())}`);\n  console.log(`${kleur.dim(\"   namespace     \")}${namespaceLabel(config.llm)}`);\n}\n\n/** Pull the two required Ollama models, streaming progress directly to the terminal. */\nasync function pullOllamaModels(): Promise<void> {\n  for (const model of [LOCAL_MODELS.generation, LOCAL_MODELS.embeddings]) {\n    console.log(kleur.dim(`  pulling ${model}…`));\n    await new Promise<void>((resolve, reject) => {\n      const child = spawn(\"ollama\", [\"pull\", model], { stdio: \"inherit\" });\n      child.on(\"error\", (err) =>\n        reject(new Error(`Failed to spawn ollama: ${err.message}`)),\n      );\n      child.on(\"exit\", (code) => {\n        if (code === 0) resolve();\n        else reject(new Error(`ollama pull ${model} exited with code ${code}`));\n      });\n    });\n  }\n  console.log(`${kleur.green(\"✓\")}  models ready`);\n}\n\n/**\n * Escape hatch: prompt for a base URL and model names for any OpenAI-compatible local\n * server (llama.cpp server, LM Studio, vLLM, LocalAI). Saves the\n * local-openai-compatible preset with the user-supplied values.\n */\nasync function setupCustomUrl(): Promise<void> {\n  console.log();\n  console.log(kleur.dim(\"  Compatible servers: llama.cpp server, LM Studio, vLLM, LocalAI\"));\n  console.log(kleur.dim(\"  Make sure your server exposes /v1/chat/completions and /v1/embeddings\"));\n  console.log();\n\n  const baseUrl = await input({\n    message: \"Server base URL:\",\n    default: \"http://localhost:8080/v1\",\n    validate: (v) =>\n      v.trim().startsWith(\"http\") ? true : \"Must be an http(s) URL\",\n  });\n\n  const genModel = await input({\n    message: \"Generation model name (as loaded in your server):\",\n    default: \"qwen2.5-coder\",\n  });\n\n  const embedModel = await input({\n    message: \"Embedding model name:\",\n    default: \"nomic-embed-text\",\n  });\n\n  const lookup = LLM_PRESETS[\"local-openai-compatible\"]!;\n  const config = await loadConfig();\n  config.llm = {\n    ...config.llm,\n    ...lookup,\n    generation: { provider: \"openai\", model: genModel.trim() },\n    embeddings: { provider: \"openai\", model: embedModel.trim(), dimension: 768 },\n    baseUrl: baseUrl.trim(),\n  };\n  await saveConfig(config);\n\n  console.log();\n  console.log(\n    `${kleur.green(\"✓\")}  preset saved   ${kleur.dim('\"local-openai-compatible\" → ' + configPath())}`,\n  );\n  console.log(`${kleur.dim(\"   base URL      \")}${kleur.dim(baseUrl.trim())}`);\n  console.log(\n    kleur.dim(\n      \"  Tip: edit ~/.codegraph/config.json to adjust embeddings.dimension if your model differs from 768.\",\n    ),\n  );\n}\n\n/** Cloud provider sub-picker. Applies the chosen preset and prompts for the API key. */\nasync function setupCloudProvider(): Promise<void> {\n  const preset = await select({\n    message: \"Which cloud provider?\",\n    choices: [\n      {\n        name: \"OpenAI\",\n        value: \"byo-openai\",\n        description: \"gpt-4o-mini + text-embedding-3-small\",\n      },\n      {\n        name: \"Anthropic\",\n        value: \"byo-anthropic\",\n        description: \"claude-3-5-haiku (gen) + OpenAI text-embedding-3-small (embed)\",\n      },\n      {\n        name: \"Google\",\n        value: \"byo-google\",\n        description: \"gemini-1.5-flash + text-embedding-004\",\n      },\n    ],\n  });\n\n  const lookup = LLM_PRESETS[preset];\n  if (!lookup) throw new Error(`Unknown preset \"${preset}\".`);\n\n  const config = await loadConfig();\n  config.llm = { ...config.llm, ...lookup };\n  config.llm.baseUrl = undefined;\n  await saveConfig(config);\n\n  console.log();\n  console.log(`${kleur.green(\"✓\")}  preset saved   ${kleur.dim(`\"${preset}\" → ${configPath()}`)}`);\n  console.log(`${kleur.dim(\"   namespace     \")}${namespaceLabel(config.llm)}`);\n\n  if (preset === \"byo-anthropic\") {\n    console.log();\n    console.log(kleur.yellow(\"Note: Anthropic has no embedding API, so codegraph uses OpenAI embeddings.\"));\n    console.log(kleur.yellow(\"You'll need both ANTHROPIC_API_KEY and OPENAI_API_KEY set.\"));\n    await promptApiKey(\"ANTHROPIC_API_KEY\");\n    await promptApiKey(\"OPENAI_API_KEY\");\n    return;\n  }\n\n  const envVar = apiKeyEnvVarFor(preset);\n  if (envVar) await promptApiKey(envVar);\n}\n\n/** Open a URL in the default browser without blocking. */\nfunction openUrl(url: string): void {\n  const cmd =\n    process.platform === \"darwin\"\n      ? \"open\"\n      : process.platform === \"win32\"\n        ? \"start\"\n        : \"xdg-open\";\n  const child = spawn(cmd, [url], { detached: true, stdio: \"ignore\" });\n  child.unref();\n}\n\nfunction apiKeyEnvVarFor(preset: string): string | null {\n  if (preset === \"byo-openai\" || preset === \"managed-stub\") return \"OPENAI_API_KEY\";\n  if (preset === \"byo-anthropic\") return \"ANTHROPIC_API_KEY\";\n  if (preset === \"byo-google\") return \"GOOGLE_GENERATIVE_AI_API_KEY\";\n  return null;\n}\n\n/**\n * Hidden-input prompt for a single API key env var. We never persist the key to disk;\n * shell env vars stay the right place for secrets. If the user opts to provide a value,\n * we set it in `process.env` for the current process (so the live test + index work\n * immediately) and also print the `export` line so they can persist it themselves.\n */\nasync function promptApiKey(envVar: string): Promise<void> {\n  console.log();\n  if (process.env[envVar]) {\n    console.log(`${kleur.green(\"✓\")}  ${envVar} ${kleur.dim(\"already set in this shell\")}`);\n    return;\n  }\n  const provide = await confirm({\n    message: `${envVar} is not set. Provide it now? (input will be hidden)`,\n    default: true,\n  });\n  if (!provide) {\n    console.log(\n      kleur.yellow(`! Skipped. Export ${envVar} before \\`codegraph index\\` or \\`codegraph serve\\`.`),\n    );\n    return;\n  }\n  const value = await password({ message: `${envVar}`, mask: \"*\" });\n  if (!value) {\n    console.log(kleur.yellow(`! Empty value — skipping ${envVar}.`));\n    return;\n  }\n  process.env[envVar] = value;\n  console.log();\n  console.log(kleur.dim(\"Add this to your ~/.zshrc or ~/.bashrc so it persists:\"));\n  console.log(`  ${kleur.cyan(`export ${envVar}=${maskTail(value)}`)}`);\n}\n\n/** Show only the last 4 chars of a secret, masking the rest, for the displayed export line. */\nfunction maskTail(value: string): string {\n  if (value.length <= 8) return \"*\".repeat(value.length);\n  return `${\"*\".repeat(value.length - 4)}${value.slice(-4)}`;\n}\n\n/**\n * Live round-trip against the configured LLM. Same logic as `config llm test` but with\n * a retry loop so the user can fix credentials in another terminal and retry without\n * restarting the wizard.\n */\nasync function runLiveTest(): Promise<void> {\n  stepHeader(3, \"Verify credentials\");\n  while (true) {\n    const config = await loadConfig();\n    console.log(\n      kleur.dim(\n        `  testing ${config.llm.generation.provider}:${config.llm.generation.model} + ${config.llm.embeddings.provider}:${config.llm.embeddings.model}`,\n      ),\n    );\n    const spinner = makeSpinner(\"Calling provider\").start();\n    try {\n      const router = await createLlmRouter({ config: config.llm });\n      const result = await router.selfTest();\n      spinner.succeed(\"LLM provider reachable\");\n      console.log(\n        kleur.dim(\n          `   embed=${result.embedLatencyMs}ms gen=${result.generateLatencyMs}ms dims=${result.embedDims}`,\n        ),\n      );\n      return;\n    } catch (err) {\n      spinner.fail(\"LLM provider unreachable\");\n      console.log(kleur.red(`   ${err instanceof Error ? err.message : String(err)}`));\n\n      const choice = await select({\n        message: \"What now?\",\n        choices: [\n          { name: \"Retry (I'll fix it in another terminal)\", value: \"retry\" },\n          { name: \"Skip — set up LLM later\", value: \"skip\" },\n        ],\n      });\n      if (choice === \"skip\") {\n        console.log(\n          kleur.yellow(\n            \"! Continuing without a verified LLM. Embeddings and semantic search will fail until you fix this.\",\n          ),\n        );\n        return;\n      }\n    }\n  }\n}\n\n/**\n * Optional: index the current working directory.\n *\n * We deliberately spawn `codegraph index <cwd>` as a child process rather than calling\n * `runIndexCommand()` in-process. Kuzu's Node.js bindings (0.11.x) attach N-API\n * finalizers to the Database/Connection handles and rely on a process-exit hook for\n * final cleanup. When we kept indexing in-process, those finalizers ran on libuv\n * worker threads while the next inquirer prompt grabbed stdin in raw mode, racing\n * with readline and SIGSEGV'ing the wizard. Running indexing in a child isolates\n * Kuzu's lifecycle entirely — the child dies, Kuzu cleans up safely with no stdin\n * to fight over, and the parent wizard's terminal stays untouched.\n */\nasync function runIndexStep(): Promise<void> {\n  stepHeader(4, \"Index this repo\");\n  const cwd = process.cwd();\n  const display = abbreviateHome(cwd);\n  const yes = await confirm({\n    message: `Index the current directory (${display}) now?`,\n    default: true,\n  });\n  if (!yes) {\n    console.log(kleur.dim(\"Skipped. Run this when ready:\"));\n    console.log(`  ${kleur.cyan(`codegraph index ${display}`)}`);\n    return;\n  }\n  console.log();\n\n  const binPath = resolveBinPath();\n  try {\n    await spawnIndex(binPath, cwd);\n  } catch (err) {\n    console.log();\n    console.log(\n      kleur.yellow(\n        `! Index failed: ${err instanceof Error ? err.message : String(err)}`,\n      ),\n    );\n    console.log(\n      kleur.dim(\"   You can retry later with `codegraph index <path>`. Continuing wizard.\"),\n    );\n  }\n}\n\n/**\n * Locate the codegraph CLI binary. When the wizard is running, `process.argv[1]` is the\n * resolved path to `dist/bin.js` (Node resolves the npm bin shim symlink before exec).\n * Fall back to a relative lookup from this module's location when argv[1] isn't a real\n * file (e.g. during weird launchers). Both paths land on the same `dist/bin.js`.\n */\nfunction resolveBinPath(): string {\n  if (process.argv[1] && path.isAbsolute(process.argv[1])) return process.argv[1];\n  return fileURLToPath(new URL(\"./bin.js\", import.meta.url));\n}\n\nfunction spawnIndex(binPath: string, repoPath: string): Promise<void> {\n  return new Promise((resolvePromise, reject) => {\n    const child = spawn(process.execPath, [binPath, \"index\", repoPath], {\n      stdio: \"inherit\",\n      env: process.env,\n    });\n    child.on(\"error\", reject);\n    child.on(\"exit\", (code, signal) => {\n      if (signal) {\n        reject(new Error(`codegraph index terminated by signal ${signal}`));\n        return;\n      }\n      if (code !== 0) {\n        reject(new Error(`codegraph index exited with code ${code}`));\n        return;\n      }\n      resolvePromise();\n    });\n  });\n}\n\n/**\n * MCP server step. Doesn't actually start the server (the user needs it running in a\n * separate terminal so `codegraph init` can keep prompting). Generates/reads the bearer\n * token so we can show the real value in the next step's config snippet.\n */\nasync function runServeStep(): Promise<string> {\n  stepHeader(5, \"Boot the MCP server\");\n\n  const { config: serverConfig, created } = await resolveServerConfig({});\n  if (created) {\n    console.log(kleur.dim(\"  generated a new bearer token for this machine\"));\n  }\n\n  const url = `http://${serverConfig.host}:${serverConfig.port}/mcp`;\n  const body = [\n    \"Open a \" + kleur.bold(\"new terminal\") + \" and run:\",\n    \"\",\n    `    ${kleur.cyan(\"codegraph serve\")}`,\n    \"\",\n    kleur.dim(\"Expected output:\"),\n    kleur.dim(`    codegraph mcp listening on ${url}`),\n    \"\",\n    kleur.dim(\"Keep that terminal running while you use CodeGraph.\"),\n  ].join(\"\\n\");\n  process.stdout.write(\n    `${boxen(body, {\n      padding: { top: 0, bottom: 0, left: 2, right: 2 },\n      margin: { top: 1, bottom: 1, left: 0, right: 0 },\n      borderStyle: \"round\",\n      borderColor: \"cyan\",\n      title: kleur.bold(\"Start the server\"),\n      titleAlignment: \"left\",\n    })}\\n`,\n  );\n\n  await confirm({\n    message: \"Done — the server is running in another terminal?\",\n    default: true,\n  });\n  return serverConfig.bearerToken;\n}\n\n/**\n * Client selector + filled-in config snippet. The bearer token is the real resolved\n * value, so the user can copy-paste verbatim without hunting in `config.json`.\n */\nasync function runClientStep(bearerToken: string): Promise<void> {\n  stepHeader(6, \"Connect your AI client\");\n\n  const url = \"http://127.0.0.1:3748/mcp\";\n\n  const client = await select({\n    message: \"Which AI client are you connecting?\",\n    choices: [\n      { name: \"Cursor\", value: \"cursor\" },\n      { name: \"Claude Code\", value: \"claude\" },\n      { name: \"Windsurf\", value: \"windsurf\" },\n      { name: \"Skip for now\", value: \"skip\" },\n    ],\n  });\n\n  if (client === \"skip\") {\n    console.log(\n      kleur.dim(\"Skipped. See docs/clients.md for per-client configuration when ready.\"),\n    );\n    return;\n  }\n\n  if (client === \"cursor\") {\n    const snippet = JSON.stringify(\n      {\n        mcpServers: {\n          codegraph: {\n            url,\n            headers: { Authorization: `Bearer ${bearerToken}` },\n          },\n        },\n      },\n      null,\n      2,\n    );\n    const body = [\n      \"Create or edit \" + kleur.cyan(\".cursor/mcp.json\") + \" in your project root:\",\n      \"\",\n      kleur.green(snippet),\n      \"\",\n      kleur.dim(\"Then open Cursor → Settings → MCP.\"),\n      kleur.dim(\"`codegraph` should appear as connected with 10 tools.\"),\n    ].join(\"\\n\");\n    process.stdout.write(\n      `${boxen(body, {\n        padding: 1,\n        margin: { top: 1, bottom: 1, left: 0, right: 0 },\n        borderStyle: \"round\",\n        borderColor: \"magenta\",\n        title: kleur.bold(\"Cursor config\"),\n        titleAlignment: \"left\",\n      })}\\n`,\n    );\n  } else if (client === \"claude\") {\n    const oneliner = [\n      \"claude mcp add --transport sse codegraph \\\\\",\n      `  ${url} \\\\`,\n      `  --header \"Authorization: Bearer ${bearerToken}\"`,\n    ].join(\"\\n\");\n    const body = [\n      \"Run this in your terminal:\",\n      \"\",\n      kleur.green(oneliner),\n      \"\",\n      kleur.dim(\"Then type \") +\n        kleur.cyan(\"/mcp\") +\n        kleur.dim(\" in Claude Code to confirm 10 tools are listed.\"),\n    ].join(\"\\n\");\n    process.stdout.write(\n      `${boxen(body, {\n        padding: 1,\n        margin: { top: 1, bottom: 1, left: 0, right: 0 },\n        borderStyle: \"round\",\n        borderColor: \"magenta\",\n        title: kleur.bold(\"Claude Code config\"),\n        titleAlignment: \"left\",\n      })}\\n`,\n    );\n  } else {\n    const snippet = JSON.stringify(\n      {\n        mcpServers: {\n          codegraph: {\n            serverUrl: url,\n            headers: { Authorization: `Bearer ${bearerToken}` },\n          },\n        },\n      },\n      null,\n      2,\n    );\n    const body = [\n      \"Edit \" + kleur.cyan(\"~/.codeium/windsurf/mcp_config.json\") + \":\",\n      \"\",\n      kleur.green(snippet),\n      \"\",\n      kleur.dim(\"Then restart Windsurf or run \") +\n        kleur.cyan(\"/refresh-tools\") +\n        kleur.dim(\" in Cascade.\"),\n    ].join(\"\\n\");\n    process.stdout.write(\n      `${boxen(body, {\n        padding: 1,\n        margin: { top: 1, bottom: 1, left: 0, right: 0 },\n        borderStyle: \"round\",\n        borderColor: \"magenta\",\n        title: kleur.bold(\"Windsurf config\"),\n        titleAlignment: \"left\",\n      })}\\n`,\n    );\n  }\n\n  await confirm({\n    message: \"Done — your client is configured?\",\n    default: true,\n  });\n}\n\n/**\n * Final step: invite the user to try a real prompt, then print a celebration box. The\n * \"Skip\" branch still prints the summary so users can finish the wizard without an AI\n * client at hand.\n */\nasync function runCelebration(): Promise<void> {\n  console.log();\n  console.log(kleur.cyan(`──── ${kleur.bold(\"Almost there!\")} ────`));\n  console.log(\n    kleur.dim(\n      'Ask your AI assistant something like: \"What files are in this repo?\"',\n    ),\n  );\n  console.log(\n    kleur.dim(\"It should call a `codegraph_*` MCP tool to answer.\"),\n  );\n  console.log();\n\n  const choice = await select({\n    message: \"How did it go?\",\n    choices: [\n      { name: \"It worked!\", value: \"worked\" },\n      { name: \"Skip\", value: \"skip\" },\n    ],\n  });\n\n  const header =\n    choice === \"worked\"\n      ? kleur.green().bold(\"✓  CodeGraph is fully connected!\")\n      : kleur.cyan().bold(\"✓  CodeGraph setup complete\");\n\n  const body = [\n    header,\n    \"\",\n    \"Your AI assistant can now call these tools:\",\n    `  ${kleur.cyan(\"•\")} find_callers       — what calls a function`,\n    `  ${kleur.cyan(\"•\")} get_component_tree — render dependency tree`,\n    `  ${kleur.cyan(\"•\")} blast_radius       — impact of a change`,\n    `  ${kleur.cyan(\"•\")} search_semantic    — symbol search by description`,\n    `  ${kleur.cyan(\"•\")} nl_query           — natural-language Cypher`,\n    `  ${kleur.dim(\"…plus 5 more (search_symbol, find_file, get_file_context,\")}`,\n    `  ${kleur.dim(\"    get_dependencies, affected_by)\")}`,\n    \"\",\n    kleur.dim(\"Visualise the graph:\"),\n    `  ${kleur.cyan(\"codegraph view\")}              ${kleur.dim(\"— opens the interactive graph explorer in your browser\")}`,\n    `  ${kleur.dim(\"or visit\")} ${kleur.cyan(\"http://127.0.0.1:3748/viewer\")} ${kleur.dim(\"while the server is running\")}`,\n    \"\",\n    kleur.dim(\"Helpful next steps:\"),\n    `  ${kleur.cyan(\"codegraph doctor\")}   ${kleur.dim(\"— verify environment + LLM + Kuzu\")}`,\n    `  ${kleur.cyan(\"codegraph status\")} ${kleur.dim(\"<path>\")}  ${kleur.dim(\"— node/edge counts + embedding coverage\")}`,\n    \"\",\n    kleur.dim(\"Docs: https://github.com/leanlabsinnov/codegraph\"),\n  ].join(\"\\n\");\n\n  process.stdout.write(\n    `${boxen(body, {\n      padding: 1,\n      margin: { top: 1, bottom: 1, left: 0, right: 0 },\n      borderStyle: \"round\",\n      borderColor: choice === \"worked\" ? \"green\" : \"cyan\",\n    })}\\n`,\n  );\n}\n\n/** Replace the user's home directory with `~` for display, leaving everything else alone. */\nfunction abbreviateHome(p: string): string {\n  const home = process.env.HOME ?? process.env.USERPROFILE;\n  if (!home) return p;\n  const rel = path.relative(home, p);\n  if (rel.startsWith(\"..\")) return p;\n  return rel ? `~${path.sep}${rel}` : \"~\";\n}\n","import { DEFAULT_CONFIG } from \"@codegraph/shared\";\nimport { InMemoryCache } from \"./cache.js\";\nimport {\n  defaultConfigPath,\n  readCodegraphConfig,\n  resolveDbPath,\n  resolveServerConfig,\n} from \"./config.js\";\nimport { createConsoleLogger } from \"./logger.js\";\nimport { type StartedSseServer, startSseServer } from \"./server.js\";\nimport type { GraphClient, LlmRouter, ServerConfig, ToolDeps } from \"./types.js\";\n\nexport interface StartMcpServerOptions {\n  /** Port override; defaults to the value in config or {@link MCP_PORT}. */\n  port?: number;\n  host?: string;\n  configPath?: string;\n  /** Optional override for the embedded Kuzu graph directory. */\n  dbPath?: string;\n  /** Custom deps for tests; if provided, skips loading Phase-1 packages. */\n  deps?: Partial<ToolDeps>;\n  /**\n   * Absolute path to the viewer static assets directory.\n   * Forwarded to {@link startSseServer}; enables /viewer and /api/* routes.\n   */\n  viewerDir?: string;\n}\n\n/**\n * High-level CLI-facing helper. Reads `~/.codegraph/config.json`, wires up the embedded\n * Kuzu graph client and the LLM router from the Phase-1 packages, and boots the SSE\n * server. The tool-result cache is an in-process LRU; we no longer require Redis.\n *\n * Returns the running {@link StartedSseServer} so the caller can await graceful shutdown.\n */\nexport async function startMcpServer(\n  portOrOptions?: number | StartMcpServerOptions,\n): Promise<StartedSseServer> {\n  const options: StartMcpServerOptions =\n    typeof portOrOptions === \"number\" ? { port: portOrOptions } : (portOrOptions ?? {});\n  const logger = createConsoleLogger();\n\n  const overrides: Partial<ServerConfig> = {};\n  if (options.port !== undefined) overrides.port = options.port;\n  if (options.host !== undefined) overrides.host = options.host;\n\n  const { config, configPath, created } = await resolveServerConfig({\n    ...(options.configPath !== undefined ? { configPath: options.configPath } : {}),\n    overrides,\n  });\n  if (created) logger.info(\"generated new bearer token\", { configPath });\n\n  const fileConfig = await readCodegraphConfig(options.configPath ?? defaultConfigPath());\n  const dbPath = options.dbPath ?? resolveDbPath(fileConfig);\n\n  const cache = options.deps?.cache ?? new InMemoryCache();\n  const graph = options.deps?.graph ?? (await loadGraphClient(dbPath));\n  const llm = options.deps?.llm ?? (await loadLlmRouter(options.configPath ?? defaultConfigPath()));\n\n  const deps: ToolDeps = {\n    graph,\n    llm,\n    cache,\n    cacheTtlSeconds: config.cacheTtlSeconds,\n    logger,\n  };\n  return startSseServer({ deps, config, viewerDir: options.viewerDir });\n}\n\n/** Dynamic import wrapper around `@codegraph/graph-db`. */\nasync function loadGraphClient(dbPath: string | undefined): Promise<GraphClient> {\n  let mod: Record<string, unknown>;\n  try {\n    mod = (await import(\"@codegraph/graph-db\")) as Record<string, unknown>;\n  } catch (err) {\n    throw new Error(\n      `Failed to import @codegraph/graph-db. Run \\`pnpm -r build\\` first. Underlying error: ${\n        err instanceof Error ? err.message : String(err)\n      }`,\n    );\n  }\n  const GraphDb = mod.GraphDb as\n    | (new (opts: { dbPath?: string }) => GraphDbLike)\n    | undefined;\n  if (typeof GraphDb !== \"function\") {\n    throw new Error(\"@codegraph/graph-db has no `GraphDb` export.\");\n  }\n  const db = new GraphDb(dbPath !== undefined ? { dbPath } : {});\n  await db.connect();\n  await db.migrate();\n  return {\n    async query<T extends Record<string, unknown>>(\n      cypher: string,\n      params?: Record<string, unknown>,\n    ): Promise<T[]> {\n      const r = await db.query<T>(cypher, params ?? {});\n      return r.data;\n    },\n    async close() {\n      await db.close();\n    },\n  };\n}\n\ninterface GraphDbLike {\n  connect(): Promise<void>;\n  close(): Promise<void>;\n  migrate(): Promise<void>;\n  query<T extends Record<string, unknown> = Record<string, unknown>>(\n    cypher: string,\n    params?: Record<string, unknown>,\n  ): Promise<{ data: T[] }>;\n}\n\n/** Dynamic import wrapper around `@codegraph/llm-router`. */\nasync function loadLlmRouter(configPath: string): Promise<LlmRouter> {\n  let mod: Record<string, unknown>;\n  try {\n    mod = (await import(\"@codegraph/llm-router\")) as Record<string, unknown>;\n  } catch (err) {\n    throw new Error(\n      `Failed to import @codegraph/llm-router. Run \\`pnpm -r build\\` first. Underlying error: ${\n        err instanceof Error ? err.message : String(err)\n      }`,\n    );\n  }\n  const createLlmRouter = mod.createLlmRouter as\n    | ((opts: {\n        config?: unknown;\n        configPath?: string;\n      }) => Promise<RouterLike> | RouterLike)\n    | undefined;\n  if (typeof createLlmRouter !== \"function\") {\n    throw new Error(\"@codegraph/llm-router has no `createLlmRouter` export.\");\n  }\n  // Read the persisted llm config out of the codegraph config file. If it's missing\n  // (user ran `codegraph serve` before ever calling `codegraph config llm set`), fall\n  // back to the shared DEFAULT_CONFIG so we at least surface a useful \"missing API key\"\n  // error rather than a `Cannot read properties of undefined`.\n  const fileConfig = await readCodegraphConfig(configPath);\n  const llmConfig =\n    (fileConfig.llm as { generation?: unknown; embeddings?: unknown } | undefined) ??\n    undefined;\n  const effectiveConfig =\n    llmConfig && llmConfig.generation && llmConfig.embeddings ? llmConfig : DEFAULT_CONFIG.llm;\n  const router = await createLlmRouter({\n    config: effectiveConfig as unknown,\n    configPath,\n  });\n  return adaptLlmRouter(router);\n}\n\ninterface RouterLike {\n  embed(texts: string[]): Promise<number[][]>;\n  generate(opts: {\n    system?: string;\n    messages: { role: \"system\" | \"user\" | \"assistant\"; content: string }[];\n    maxTokens?: number;\n    temperature?: number;\n  }): Promise<string>;\n  config?: {\n    embeddingNamespace?: { provider: string; model: string; dimension: number };\n    embeddings?: { provider: string; model: string; dimension: number };\n  };\n}\n\nfunction adaptLlmRouter(router: RouterLike): LlmRouter {\n  const ns =\n    router.config?.embeddingNamespace ??\n    (router.config?.embeddings\n      ? {\n          provider: router.config.embeddings.provider,\n          model: router.config.embeddings.model,\n          dimension: router.config.embeddings.dimension,\n        }\n      : { provider: \"unknown\", model: \"unknown\", dimension: 0 });\n  return {\n    embed: (texts) => router.embed(texts),\n    generate: (opts) => router.generate(opts),\n    embeddingNamespace: ns,\n  };\n}\n","import { createHash } from \"node:crypto\";\nimport type { ToolCache } from \"./types.js\";\n\n/** Build a stable cache key from a tool name and arguments. */\nexport function buildCacheKey(toolName: string, args: unknown, namespace = \"v1\"): string {\n  const serialized = stableStringify(args);\n  const hash = createHash(\"sha1\").update(serialized).digest(\"hex\");\n  return `codegraph:${namespace}:tool:${toolName}:${hash}`;\n}\n\n/** Deterministic JSON.stringify that sorts object keys. */\nfunction stableStringify(value: unknown): string {\n  return JSON.stringify(value, (_key, v) => {\n    if (v && typeof v === \"object\" && !Array.isArray(v)) {\n      const sorted: Record<string, unknown> = {};\n      for (const key of Object.keys(v as Record<string, unknown>).sort()) {\n        sorted[key] = (v as Record<string, unknown>)[key];\n      }\n      return sorted;\n    }\n    return v;\n  });\n}\n\n/**\n * In-memory TTL cache. Used everywhere now that we no longer run a separate Redis service.\n *\n * Per-process is fine for the single-user local tool: every MCP server boot starts with a\n * cold cache, which trades a few extra Cypher queries for one fewer process to manage.\n */\nexport class InMemoryCache implements ToolCache {\n  private store = new Map<string, { value: string; expiresAt: number }>();\n\n  async get(key: string): Promise<string | null> {\n    const entry = this.store.get(key);\n    if (!entry) return null;\n    if (entry.expiresAt <= Date.now()) {\n      this.store.delete(key);\n      return null;\n    }\n    return entry.value;\n  }\n\n  async set(key: string, value: string, ttlSeconds: number): Promise<void> {\n    this.store.set(key, { value, expiresAt: Date.now() + ttlSeconds * 1000 });\n  }\n\n  async close(): Promise<void> {\n    this.store.clear();\n  }\n}\n\n/**\n * Returns a cached value or computes it via `compute`, storing the result with the given TTL.\n * Errors from the cache layer are swallowed - compute is still called, just uncached.\n */\nexport async function memoizeJson<T>(\n  cache: ToolCache,\n  key: string,\n  ttlSeconds: number,\n  compute: () => Promise<T>,\n): Promise<T> {\n  const cached = await cache.get(key);\n  if (cached !== null) {\n    try {\n      return JSON.parse(cached) as T;\n    } catch {\n      // corrupt cache entry; fall through and recompute\n    }\n  }\n  const value = await compute();\n  await cache.set(key, JSON.stringify(value), ttlSeconds);\n  return value;\n}\n","import { mkdir, readFile, writeFile } from \"node:fs/promises\";\nimport { homedir } from \"node:os\";\nimport { dirname, resolve } from \"node:path\";\nimport { generateBearerToken } from \"./server.js\";\nimport type { ServerConfig } from \"./types.js\";\n\n/**\n * Persisted config file shape. Stays intentionally permissive so we can interoperate with\n * the Phase-1 `~/.codegraph/config.json` that `@codegraph/llm-router` writes.\n *\n * - `mcpToken` is the legacy/Phase-1 location for the bearer token.\n * - `server.bearerToken` is the Phase-2 location. Both are accepted on read; new writes\n *   populate both fields to avoid one writer clobbering another reader.\n * - `data.dbPath` is the optional override for the embedded Kuzu graph directory.\n */\nexport interface CodegraphConfigFile {\n  llm?: Record<string, unknown>;\n  data?: { dbPath?: string };\n  server?: {\n    host?: string;\n    port?: number;\n    bearerToken?: string;\n    cacheTtlSeconds?: number;\n  };\n  /** Phase-1 alias for `server.bearerToken`. Treated as authoritative if both are set. */\n  mcpToken?: string;\n  [extra: string]: unknown;\n}\n\n/** Default MCP listen port. Used by both server boot and clients via {@link MCP_PORT}. */\nexport const MCP_PORT = 3748;\nconst DEFAULT_HOST = \"127.0.0.1\";\nconst DEFAULT_TTL = 30;\n\nexport function defaultConfigPath(): string {\n  return resolve(homedir(), \".codegraph\", \"config.json\");\n}\n\nexport async function readCodegraphConfig(\n  path: string = defaultConfigPath(),\n): Promise<CodegraphConfigFile> {\n  try {\n    const raw = await readFile(path, \"utf8\");\n    return JSON.parse(raw) as CodegraphConfigFile;\n  } catch (err) {\n    if ((err as NodeJS.ErrnoException).code === \"ENOENT\") return {};\n    throw err;\n  }\n}\n\nexport async function writeCodegraphConfig(\n  config: CodegraphConfigFile,\n  path: string = defaultConfigPath(),\n): Promise<void> {\n  await mkdir(dirname(path), { recursive: true });\n  await writeFile(path, `${JSON.stringify(config, null, 2)}\\n`, \"utf8\");\n}\n\n/**\n * Resolve runtime server config from (in order): CLI overrides, config file,\n * environment variables, then hard-coded defaults. Generates and persists a bearer token\n * the first time so users don't have to think about it.\n */\nexport async function resolveServerConfig(opts: {\n  configPath?: string;\n  overrides?: Partial<ServerConfig>;\n}): Promise<{ config: ServerConfig; configPath: string; created: boolean }> {\n  const path = opts.configPath ?? defaultConfigPath();\n  const fileConfig = await readCodegraphConfig(path);\n  const env = process.env;\n\n  let bearerToken =\n    opts.overrides?.bearerToken ??\n    fileConfig.mcpToken ??\n    fileConfig.server?.bearerToken ??\n    env.CODEGRAPH_BEARER_TOKEN ??\n    \"\";\n  let created = false;\n  if (!bearerToken) {\n    bearerToken = generateBearerToken();\n    created = true;\n    await writeCodegraphConfig(\n      {\n        ...fileConfig,\n        mcpToken: bearerToken,\n        server: { ...(fileConfig.server ?? {}), bearerToken },\n      },\n      path,\n    );\n  }\n\n  const config: ServerConfig = {\n    host: opts.overrides?.host ?? fileConfig.server?.host ?? env.CODEGRAPH_HOST ?? DEFAULT_HOST,\n    port:\n      opts.overrides?.port ??\n      fileConfig.server?.port ??\n      (env.CODEGRAPH_PORT ? Number(env.CODEGRAPH_PORT) : MCP_PORT),\n    bearerToken,\n    cacheTtlSeconds:\n      opts.overrides?.cacheTtlSeconds ??\n      fileConfig.server?.cacheTtlSeconds ??\n      (env.CODEGRAPH_CACHE_TTL ? Number(env.CODEGRAPH_CACHE_TTL) : DEFAULT_TTL),\n  };\n  return { config, configPath: path, created };\n}\n\n/**\n * Resolve the on-disk Kuzu database path from (in order): the config file, the\n * `CODEGRAPH_DB_PATH` env var, then `undefined` (which lets `@codegraph/graph-db` fall\n * back to its own `~/.codegraph/graph` default).\n */\nexport function resolveDbPath(fileConfig: CodegraphConfigFile): string | undefined {\n  return fileConfig.data?.dbPath ?? process.env.CODEGRAPH_DB_PATH ?? undefined;\n}\n","import { randomUUID } from \"node:crypto\";\nimport type { Server as HttpServer } from \"node:http\";\nimport { join } from \"node:path\";\nimport { McpServer } from \"@modelcontextprotocol/sdk/server/mcp.js\";\nimport { SSEServerTransport } from \"@modelcontextprotocol/sdk/server/sse.js\";\nimport express, { type Request, type Response, type NextFunction, Router } from \"express\";\nimport { registerAllTools } from \"./tools/index.js\";\nimport { registerViewerApiRoutes } from \"./viewer-routes.js\";\nimport type { Logger, ServerConfig, ToolDeps } from \"./types.js\";\n\nexport interface CreateMcpServerOptions {\n  deps: ToolDeps;\n  /** Optional name/version override; defaults to \"codegraph\" / package version. */\n  serverInfo?: { name: string; version: string } | undefined;\n}\n\n/** Build an MCP server, register every Phase-2 tool, and return it (unconnected). */\nexport function createMcpServer(opts: CreateMcpServerOptions): McpServer {\n  const info = opts.serverInfo ?? { name: \"codegraph\", version: \"0.0.0\" };\n  const server = new McpServer(info, {\n    capabilities: { tools: {}, logging: {} },\n  });\n  registerAllTools(server, opts.deps);\n  return server;\n}\n\nexport interface StartSseServerOptions {\n  deps: ToolDeps;\n  config: ServerConfig;\n  serverInfo?: { name: string; version: string } | undefined;\n  /**\n   * Absolute path to the directory containing the static viewer HTML/JS/CSS.\n   * When supplied the server exposes:\n   *   GET /viewer         → index.html\n   *   GET /viewer/*       → other static assets\n   *   GET /api/repos      → unauthenticated JSON API\n   *   GET /api/graph      → unauthenticated JSON API\n   * Routes are served WITHOUT bearer-auth (loopback-only server, browser client).\n   */\n  viewerDir?: string | undefined;\n}\n\nexport interface StartedSseServer {\n  /** Underlying Node HTTP server. */\n  httpServer: HttpServer;\n  /** Resolved listen address (handy when port=0 in tests). */\n  address: { host: string; port: number };\n  /** Graceful shutdown: close transports, then HTTP server, then deps. */\n  close(): Promise<void>;\n}\n\n/**\n * Boot an HTTP server that exposes the MCP protocol over SSE on `${host}:${port}`.\n *\n * Endpoints (per the v1.x SDK example):\n *   GET  /mcp        - establish SSE stream\n *   POST /messages   - client -> server JSON-RPC messages\n *   GET  /healthz    - unauthenticated liveness probe\n *\n * Every authenticated request must include `Authorization: Bearer <token>`.\n */\nexport async function startSseServer(opts: StartSseServerOptions): Promise<StartedSseServer> {\n  const { deps, config } = opts;\n  const logger: Logger | undefined = deps.logger;\n  const app = express();\n  app.use(express.json({ limit: \"2mb\" }));\n\n  app.get(\"/healthz\", (_req, res) => {\n    res.status(200).json({ ok: true });\n  });\n\n  // Viewer + public API — registered BEFORE bearer auth (browser-accessible on loopback).\n  if (opts.viewerDir) {\n    const viewerDir = opts.viewerDir;\n    // Serve index.html directly on both /viewer and /viewer/. We avoid\n    // res.redirect(\"/viewer/\") here because Express's default non-strict\n    // routing makes \"/viewer\" match \"/viewer/\" too, which would loop.\n    const sendIndex = (_req: Request, res: Response, next: NextFunction): void => {\n      res.sendFile(join(viewerDir, \"index.html\"), (err) => {\n        if (err) next(err);\n      });\n    };\n    app.get(\"/viewer\", sendIndex);\n    app.get(\"/viewer/\", sendIndex);\n    // Any additional static assets (future css/js/images) under /viewer/<file>.\n    // `fallthrough: false` so a missing file returns 404 instead of cascading\n    // into the bearer-auth middleware below.\n    app.use(\n      \"/viewer\",\n      express.static(viewerDir, { index: false, fallthrough: false }),\n    );\n    // Mount the graph API routes (unauthenticated; loopback-only).\n    const apiRouter = Router();\n    registerViewerApiRoutes(apiRouter, deps.graph);\n    app.use(apiRouter);\n  }\n\n  app.use(bearerAuthMiddleware(config.bearerToken, logger));\n\n  const transports = new Map<string, SSEServerTransport>();\n\n  app.get(\"/mcp\", async (_req: Request, res: Response) => {\n    let transport: SSEServerTransport;\n    try {\n      transport = new SSEServerTransport(\"/messages\", res);\n    } catch (err) {\n      logger?.error(\"failed to create SSE transport\", {\n        error: err instanceof Error ? err.message : String(err),\n      });\n      if (!res.headersSent) res.status(500).send(\"Failed to establish SSE stream\");\n      return;\n    }\n    const sessionId = transport.sessionId;\n    transports.set(sessionId, transport);\n    transport.onclose = () => {\n      transports.delete(sessionId);\n      logger?.info(\"sse session closed\", { sessionId });\n    };\n\n    const server = createMcpServer({ deps, serverInfo: opts.serverInfo });\n    try {\n      await server.connect(transport);\n      logger?.info(\"sse session opened\", { sessionId });\n    } catch (err) {\n      logger?.error(\"server.connect failed\", {\n        sessionId,\n        error: err instanceof Error ? err.message : String(err),\n      });\n      transports.delete(sessionId);\n      if (!res.headersSent) res.status(500).send(\"MCP connect failed\");\n    }\n  });\n\n  app.post(\"/messages\", async (req: Request, res: Response) => {\n    const sessionId = req.query.sessionId as string | undefined;\n    if (!sessionId) {\n      res.status(400).json({ error: \"Missing sessionId query parameter\" });\n      return;\n    }\n    const transport = transports.get(sessionId);\n    if (!transport) {\n      res.status(404).json({ error: \"No active session for sessionId\" });\n      return;\n    }\n    try {\n      await transport.handlePostMessage(req, res, req.body);\n    } catch (err) {\n      logger?.error(\"handlePostMessage failed\", {\n        sessionId,\n        error: err instanceof Error ? err.message : String(err),\n      });\n      if (!res.headersSent) res.status(500).json({ error: \"Failed to handle message\" });\n    }\n  });\n\n  const httpServer = await new Promise<HttpServer>((resolve, reject) => {\n    const srv = app.listen(config.port, config.host, () => resolve(srv)).on(\"error\", reject);\n  });\n\n  const address = httpServer.address();\n  if (address === null || typeof address === \"string\") {\n    throw new Error(\"HTTP server bound to unexpected address\");\n  }\n  logger?.info(\"codegraph mcp server listening\", {\n    host: address.address,\n    port: address.port,\n    tools: 10,\n  });\n\n  const started: StartedSseServer = {\n    httpServer,\n    address: { host: address.address, port: address.port },\n    async close() {\n      for (const [id, t] of transports) {\n        try {\n          await t.close();\n        } catch {\n          // best-effort\n        }\n        transports.delete(id);\n      }\n      await new Promise<void>((resolve, reject) => {\n        httpServer.close((err) => (err ? reject(err) : resolve()));\n      });\n      await deps.cache.close?.();\n      await deps.graph.close?.();\n    },\n  };\n  return started;\n}\n\nfunction bearerAuthMiddleware(expectedToken: string, logger?: Logger) {\n  return (req: Request, res: Response, next: NextFunction): void => {\n    const header = req.header(\"authorization\") ?? req.header(\"Authorization\");\n    if (!header || !header.toLowerCase().startsWith(\"bearer \")) {\n      logger?.warn(\"auth missing\", { path: req.path });\n      res.status(401).json({ error: \"Missing bearer token\" });\n      return;\n    }\n    const presented = header.slice(\"bearer \".length).trim();\n    if (!safeEqual(presented, expectedToken)) {\n      logger?.warn(\"auth rejected\", { path: req.path });\n      res.status(403).json({ error: \"Invalid bearer token\" });\n      return;\n    }\n    next();\n  };\n}\n\n/** Constant-time string compare to avoid timing leaks on the bearer token check. */\nfunction safeEqual(a: string, b: string): boolean {\n  if (a.length !== b.length) return false;\n  let diff = 0;\n  for (let i = 0; i < a.length; i++) {\n    diff |= a.charCodeAt(i) ^ b.charCodeAt(i);\n  }\n  return diff === 0;\n}\n\n/** Generate a fresh bearer token (32 hex chars). */\nexport function generateBearerToken(): string {\n  return randomUUID().replace(/-/g, \"\");\n}\n","import { z } from \"zod\";\nimport type { ToolDefinition } from \"./types.js\";\nimport { cachedJsonResult } from \"./util.js\";\n\nconst inputSchema = {\n  symbol: z.string().min(1).describe(\"Symbol name. Use `path` for the file when ambiguous.\"),\n  path: z.string().optional().describe(\"Optional file path to disambiguate the symbol.\"),\n  depth: z.number().int().positive().max(6).default(3),\n  limit: z.number().int().positive().max(500).default(200),\n};\n\nexport const affectedByTool: ToolDefinition<typeof inputSchema> = {\n  name: \"affected_by\",\n  config: {\n    title: \"Affected By\",\n    description:\n      \"Reverse-BFS over CALLS and IMPORTS edges to surface every symbol or file whose behaviour could be affected by changing the given symbol. Depth-limited to keep query bounded.\",\n    inputSchema,\n    annotations: { readOnlyHint: true, idempotentHint: true },\n  },\n  handler: async ({ symbol, path, depth, limit }, deps) =>\n    cachedJsonResult(\"affected_by\", { symbol, path, depth, limit }, deps, async () => {\n      const where = path\n        ? \"WHERE target.name = $symbol AND target.path = $path\"\n        : \"WHERE target.name = $symbol\";\n      const rows = await deps.graph.query(\n        `MATCH (target:Symbol) ${where}\n         WITH target\n         MATCH path = (affected:Symbol)-[:CALLS|IMPORTS*1..${depth}]->(target)\n         WITH DISTINCT affected, min(length(path)) AS distance\n         RETURN affected.id AS id, affected.name AS name, affected.kind AS kind,\n                affected.path AS path, distance\n         ORDER BY distance ASC, affected.path ASC LIMIT $limit`,\n        { symbol, path: path ?? null, limit },\n      );\n      return { symbol, path: path ?? null, depth, count: rows.length, affected: rows };\n    }),\n};\n","import type { CallToolResult } from \"@modelcontextprotocol/sdk/types.js\";\nimport { buildCacheKey, memoizeJson } from \"../cache.js\";\nimport type { ToolDeps } from \"../types.js\";\n\n/** Default tool-result TTL, per the Phase-2 plan. */\nexport const DEFAULT_TOOL_TTL_SECONDS = 30;\n\n/** Wrap a JSON-serializable payload into the MCP `CallToolResult` shape. */\nexport function jsonResult(payload: unknown, extra?: { isError?: boolean }): CallToolResult {\n  const text = JSON.stringify(payload, null, 2);\n  const base = {\n    content: [{ type: \"text\" as const, text }],\n    structuredContent: isStructuredContent(payload) ? payload : { result: payload },\n  };\n  return extra?.isError ? { ...base, isError: true } : base;\n}\n\nfunction isStructuredContent(value: unknown): value is { [key: string]: unknown } {\n  return value !== null && typeof value === \"object\" && !Array.isArray(value);\n}\n\n/** Memoized JSON result helper. */\nexport async function cachedJsonResult<TArgs, TResult>(\n  toolName: string,\n  args: TArgs,\n  deps: ToolDeps,\n  compute: () => Promise<TResult>,\n): Promise<CallToolResult> {\n  const key = buildCacheKey(toolName, args);\n  const ttl = deps.cacheTtlSeconds ?? DEFAULT_TOOL_TTL_SECONDS;\n  const value = await memoizeJson(deps.cache, key, ttl, compute);\n  return jsonResult(value);\n}\n","import { z } from \"zod\";\nimport type { ToolDefinition } from \"./types.js\";\nimport { cachedJsonResult } from \"./util.js\";\n\nconst inputSchema = {\n  symbol: z.string().min(1).describe(\"Symbol name to compute the blast radius for.\"),\n  path: z.string().optional().describe(\"Optional file path to disambiguate the symbol.\"),\n  depth: z.number().int().positive().max(6).default(4),\n  sampleSize: z.number().int().positive().max(50).default(10),\n};\n\nexport const blastRadiusTool: ToolDefinition<typeof inputSchema> = {\n  name: \"blast_radius\",\n  config: {\n    title: \"Blast Radius\",\n    description:\n      \"Reverse-BFS over CALLS, IMPORTS, and RENDERS edges to count the total number of upstream dependents, plus a small sample to give the agent context.\",\n    inputSchema,\n    annotations: { readOnlyHint: true, idempotentHint: true },\n  },\n  handler: async ({ symbol, path, depth, sampleSize }, deps) =>\n    cachedJsonResult(\"blast_radius\", { symbol, path, depth, sampleSize }, deps, async () => {\n      const where = path\n        ? \"WHERE target.name = $symbol AND target.path = $path\"\n        : \"WHERE target.name = $symbol\";\n      const [stats] = await deps.graph.query<{ total: number }>(\n        `MATCH (target:Symbol) ${where}\n           WITH target\n           MATCH (dependent:Symbol)-[:CALLS|IMPORTS|RENDERS*1..${depth}]->(target)\n           RETURN count(DISTINCT dependent) AS total`,\n        { symbol, path: path ?? null },\n      );\n      const sample = await deps.graph.query(\n        `MATCH (target:Symbol) ${where}\n           WITH target\n           MATCH p = (dependent:Symbol)-[:CALLS|IMPORTS|RENDERS*1..${depth}]->(target)\n           WITH DISTINCT dependent, min(length(p)) AS distance\n           RETURN dependent.id AS id, dependent.name AS name, dependent.kind AS kind,\n                  dependent.path AS path, distance\n           ORDER BY distance ASC, dependent.path ASC LIMIT $sampleSize`,\n        { symbol, path: path ?? null, sampleSize },\n      );\n      return {\n        symbol,\n        path: path ?? null,\n        depth,\n        totalDependents: stats?.total ?? 0,\n        sample,\n      };\n    }),\n};\n","import { z } from \"zod\";\nimport type { ToolDefinition } from \"./types.js\";\nimport { cachedJsonResult } from \"./util.js\";\n\nconst inputSchema = {\n  name: z.string().min(1).describe(\"Exact symbol name to find callers of.\"),\n  limit: z.number().int().positive().max(500).default(100),\n};\n\nexport const findCallersTool: ToolDefinition<typeof inputSchema> = {\n  name: \"find_callers\",\n  config: {\n    title: \"Find Callers\",\n    description:\n      \"Return symbols that have a CALLS edge to the named target. Uses Phase-1 heuristic edges (identifier-position match).\",\n    inputSchema,\n    annotations: { readOnlyHint: true, idempotentHint: true },\n  },\n  handler: async ({ name, limit }, deps) =>\n    cachedJsonResult(\"find_callers\", { name, limit }, deps, async () => {\n      const rows = await deps.graph.query(\n        `MATCH (caller:Symbol)-[:CALLS]->(callee:Symbol)\n         WHERE callee.name = $name\n         RETURN caller.id AS id, caller.name AS name, caller.kind AS kind,\n                caller.path AS path, caller.lineStart AS line\n         ORDER BY caller.path, caller.lineStart LIMIT $limit`,\n        { name, limit },\n      );\n      return { name, count: rows.length, callers: rows };\n    }),\n};\n","import { z } from \"zod\";\nimport type { ToolDefinition } from \"./types.js\";\nimport { cachedJsonResult } from \"./util.js\";\n\nconst inputSchema = {\n  fragment: z.string().min(1).describe(\"Substring to match against file paths.\"),\n  limit: z.number().int().positive().max(200).default(50),\n};\n\nexport const findFileTool: ToolDefinition<typeof inputSchema> = {\n  name: \"find_file\",\n  config: {\n    title: \"Find File\",\n    description: \"Locate files in the indexed repo by a substring of their path.\",\n    inputSchema,\n    annotations: { readOnlyHint: true, idempotentHint: true },\n  },\n  handler: async ({ fragment, limit }, deps) =>\n    cachedJsonResult(\"find_file\", { fragment, limit }, deps, async () => {\n      const rows = await deps.graph.query(\n        `MATCH (f:Symbol)\n         WHERE f.kind = 'File' AND lower(f.path) CONTAINS lower($q)\n         RETURN f.id AS id, f.path AS path, f.name AS name\n         ORDER BY f.path LIMIT $limit`,\n        { q: fragment, limit },\n      );\n      return { fragment, count: rows.length, matches: rows };\n    }),\n};\n","import { z } from \"zod\";\nimport type { ToolDefinition } from \"./types.js\";\nimport { cachedJsonResult } from \"./util.js\";\n\nconst inputSchema = {\n  name: z.string().min(1).describe(\"Component name (PascalCase).\"),\n  depth: z.number().int().positive().max(8).default(4),\n};\n\nexport const getComponentTreeTool: ToolDefinition<typeof inputSchema> = {\n  name: \"get_component_tree\",\n  config: {\n    title: \"Get Component Tree\",\n    description:\n      \"Recursively walk RENDERS edges from the named component, returning the rendered descendants up to the requested depth.\",\n    inputSchema,\n    annotations: { readOnlyHint: true, idempotentHint: true },\n  },\n  handler: async ({ name, depth }, deps) =>\n    cachedJsonResult(\"get_component_tree\", { name, depth }, deps, async () => {\n      // We accept Component OR Function as the root kind: the Phase-1 extractor only\n      // tags arrow-function components as `Component`; declared functions returning JSX\n      // still land as `Function`, and we don't want the tool to silently fail in that\n      // case. The agent gets a `rootKind` field to disambiguate.\n      const rootRows = await deps.graph.query<{\n        rootId: string;\n        rootName: string;\n        rootPath: string;\n        rootKind: string;\n      }>(\n        `MATCH (root:Symbol)\n         WHERE root.name = $name AND (root.kind = 'Component' OR root.kind = 'Function' OR root.kind = 'Class')\n         RETURN root.id AS rootId, root.name AS rootName, root.path AS rootPath, root.kind AS rootKind\n         ORDER BY CASE root.kind WHEN 'Component' THEN 0 WHEN 'Function' THEN 1 ELSE 2 END\n         LIMIT 1`,\n        { name },\n      );\n      const root = rootRows[0];\n      if (!root) {\n        return {\n          name,\n          depth,\n          found: false,\n          root: null,\n          children: [],\n        };\n      }\n      const children = await deps.graph.query<{\n        id: string;\n        name: string;\n        path: string;\n        kind: string;\n        distance: number;\n      }>(\n        `MATCH (root:Symbol {id: $rootId})\n         OPTIONAL MATCH p = (root)-[:RENDERS*1..${depth}]->(child:Symbol)\n         WITH child, min(length(p)) AS distance\n         WHERE child IS NOT NULL\n         RETURN child.id AS id, child.name AS name, child.kind AS kind,\n                child.path AS path, distance\n         ORDER BY distance ASC, child.name ASC`,\n        { rootId: root.rootId },\n      );\n      return {\n        name,\n        depth,\n        found: true,\n        root: {\n          id: root.rootId,\n          name: root.rootName,\n          path: root.rootPath,\n          kind: root.rootKind,\n        },\n        children,\n      };\n    }),\n};\n","import { z } from \"zod\";\nimport type { ToolDefinition } from \"./types.js\";\nimport { cachedJsonResult } from \"./util.js\";\n\nconst inputSchema = {\n  path: z.string().min(1).describe(\"Repo-relative file path.\"),\n  depth: z.number().int().positive().max(8).default(4),\n  limit: z.number().int().positive().max(500).default(200),\n};\n\nexport const getDependenciesTool: ToolDefinition<typeof inputSchema> = {\n  name: \"get_dependencies\",\n  config: {\n    title: \"Get Dependencies\",\n    description:\n      \"Forward-BFS over IMPORTS edges, returning every file transitively imported by the given path, with depth.\",\n    inputSchema,\n    annotations: { readOnlyHint: true, idempotentHint: true },\n  },\n  handler: async ({ path, depth, limit }, deps) =>\n    cachedJsonResult(\"get_dependencies\", { path, depth, limit }, deps, async () => {\n      const rows = await deps.graph.query(\n        `MATCH (root:Symbol)\n         WHERE root.kind = 'File' AND root.path = $path\n         OPTIONAL MATCH p = (root)-[:IMPORTS*1..${depth}]->(dep:Symbol)\n         WHERE dep.kind = 'File'\n         WITH DISTINCT dep, min(length(p)) AS distance\n         WHERE dep IS NOT NULL\n         RETURN dep.id AS id, dep.path AS path, distance\n         ORDER BY distance ASC, dep.path ASC LIMIT $limit`,\n        { path, limit },\n      );\n      return { path, depth, count: rows.length, dependencies: rows };\n    }),\n};\n","import { z } from \"zod\";\nimport type { ToolDefinition } from \"./types.js\";\nimport { cachedJsonResult } from \"./util.js\";\n\nconst inputSchema = {\n  path: z.string().min(1).describe(\"Repo-relative file path.\"),\n  symbolLimit: z.number().int().positive().max(500).default(100),\n};\n\nexport const getFileContextTool: ToolDefinition<typeof inputSchema> = {\n  name: \"get_file_context\",\n  config: {\n    title: \"Get File Context\",\n    description:\n      \"Return the file's defined symbols, imported files, exported symbols, and the files that import it.\",\n    inputSchema,\n    annotations: { readOnlyHint: true, idempotentHint: true },\n  },\n  handler: async ({ path, symbolLimit }, deps) =>\n    cachedJsonResult(\"get_file_context\", { path, symbolLimit }, deps, async () => {\n      const fileRows = await deps.graph.query(\n        `MATCH (f:Symbol)\n         WHERE f.kind = 'File' AND f.path = $path\n         RETURN f.id AS id, f.path AS path, f.name AS name LIMIT 1`,\n        { path },\n      );\n      if (fileRows.length === 0) {\n        return { path, found: false };\n      }\n      const [defined, imports, exports, importers] = await Promise.all([\n        deps.graph.query(\n          `MATCH (f:Symbol)-[:DEFINES]->(s:Symbol)\n           WHERE f.kind = 'File' AND f.path = $path\n           RETURN s.id AS id, s.name AS name, s.kind AS kind, s.lineStart AS line, s.signature AS signature\n           ORDER BY s.lineStart LIMIT $limit`,\n          { path, limit: symbolLimit },\n        ),\n        deps.graph.query(\n          // Kuzu drops the node variable `t` from scope after `RETURN DISTINCT`, so the\n          // ORDER BY references the projection alias instead - using `t.path` here\n          // raises a \"Variable t is not in scope\" binder exception.\n          `MATCH (f:Symbol)-[:IMPORTS]->(t:Symbol)\n           WHERE f.kind = 'File' AND t.kind = 'File' AND f.path = $path\n           RETURN DISTINCT t.path AS path ORDER BY path`,\n          { path },\n        ),\n        deps.graph.query(\n          `MATCH (f:Symbol)-[:EXPORTS]->(s:Symbol)\n           WHERE f.kind = 'File' AND f.path = $path\n           RETURN s.id AS id, s.name AS name, s.kind AS kind, s.lineStart AS line\n           ORDER BY s.name`,\n          { path },\n        ),\n        deps.graph.query(\n          `MATCH (other:Symbol)-[:IMPORTS]->(f:Symbol)\n           WHERE other.kind = 'File' AND f.kind = 'File' AND f.path = $path\n           RETURN DISTINCT other.path AS path ORDER BY path`,\n          { path },\n        ),\n      ]);\n      return {\n        path,\n        found: true,\n        file: fileRows[0],\n        definedSymbols: defined,\n        importsFiles: imports,\n        exportedSymbols: exports,\n        importedBy: importers,\n      };\n    }),\n};\n","import { z } from \"zod\";\nimport { validateReadOnlyCypher } from \"../cypher-guard.js\";\nimport type { ToolDefinition } from \"./types.js\";\nimport { cachedJsonResult, jsonResult } from \"./util.js\";\n\nconst inputSchema = {\n  question: z.string().min(1).describe(\"Natural-language question about the codebase.\"),\n  limit: z\n    .number()\n    .int()\n    .positive()\n    .max(200)\n    .default(50)\n    .describe(\"Row cap injected into the generated query as $limit.\"),\n};\n\nconst SYSTEM_PROMPT = `You translate natural-language questions about a code graph into a single Cypher query.\n\nSchema (Kuzu):\n- Single node table: \\`Symbol\\`. Distinguish kinds via the \\`kind\\` STRING column.\n  Valid kinds: File, Function, Class, Interface, Component, Route, Variable.\n- Edge tables (each FROM Symbol TO Symbol): IMPORTS, CALLS, RENDERS, INHERITS, DEFINES, EXPORTS.\n- Useful Symbol columns: id, kind, repoId, name, path, lineStart, lineEnd, signature, leadingComment.\n\nExamples:\n  // All files imported by app.ts:\n  MATCH (a:Symbol)-[:IMPORTS]->(b:Symbol)\n  WHERE a.kind = 'File' AND a.path = 'app.ts' AND b.kind = 'File'\n  RETURN b.path LIMIT $limit\n\n  // What calls useAuth?\n  MATCH (caller:Symbol)-[:CALLS]->(callee:Symbol)\n  WHERE callee.name = 'useAuth'\n  RETURN caller.name, caller.path, caller.kind LIMIT $limit\n\nConstraints you MUST follow:\n- Produce exactly ONE statement.\n- It must be read-only: only MATCH / OPTIONAL MATCH / WITH / UNWIND / RETURN clauses.\n- Do not use CREATE, MERGE, DELETE, SET, REMOVE, DROP, FOREACH, CALL { ... }, or procedure CALLs.\n- Always include a LIMIT (use the $limit parameter that will be passed in).\n- Use \\`s.kind = 'File'\\` style filters - do NOT use multi-label syntax like \\`(s:File)\\`.\n- Return useful columns named clearly (id, name, kind, path, line, score, etc.).\n- Output ONLY the Cypher query. No prose, no markdown fences.`;\n\nexport const nlQueryTool: ToolDefinition<typeof inputSchema> = {\n  name: \"nl_query\",\n  config: {\n    title: \"Natural-Language Cypher Query\",\n    description:\n      \"Translate a natural-language question into Cypher via the configured LLM, validate it against a read-only allowlist, then execute it on the graph.\",\n    inputSchema,\n    annotations: { readOnlyHint: true, openWorldHint: true },\n  },\n  handler: async ({ question, limit }, deps) => {\n    const rawCypher = await deps.llm.generate({\n      system: SYSTEM_PROMPT,\n      messages: [{ role: \"user\", content: question }],\n      temperature: 0,\n      maxTokens: 400,\n    });\n    const cypher = stripCodeFence(rawCypher).trim();\n    const guard = validateReadOnlyCypher(cypher);\n    if (!guard.ok) {\n      return jsonResult(\n        {\n          question,\n          accepted: false,\n          rejectedCypher: cypher,\n          reason: guard.reason,\n        },\n        { isError: false },\n      );\n    }\n    return cachedJsonResult(\n      \"nl_query\",\n      { question, limit, cypher: guard.normalized },\n      deps,\n      async () => {\n        try {\n          const rows = await deps.graph.query(guard.normalized ?? cypher, { limit });\n          return {\n            question,\n            accepted: true,\n            cypher: guard.normalized ?? cypher,\n            rowCount: rows.length,\n            rows,\n          };\n        } catch (err) {\n          return {\n            question,\n            accepted: true,\n            cypher: guard.normalized ?? cypher,\n            error: err instanceof Error ? err.message : String(err),\n          };\n        }\n      },\n    );\n  },\n};\n\nfunction stripCodeFence(text: string): string {\n  const fenced = text.match(/```(?:cypher)?\\n([\\s\\S]*?)```/i);\n  if (fenced?.[1]) return fenced[1];\n  return text;\n}\n","/**\n * Allowlist-style validator for Cypher generated by `nl_query`.\n *\n * The rules are intentionally strict and conservative:\n *   - Exactly one statement (no semicolons except optionally one trailing).\n *   - The first non-whitespace clause must be a read clause (MATCH, OPTIONAL MATCH, WITH,\n *     UNWIND, RETURN).\n *   - Mutating keywords (CREATE, MERGE, DELETE, DETACH DELETE, SET, REMOVE, DROP, FOREACH)\n *     are rejected.\n *   - `CALL { ... }` subqueries are rejected because they can hide writes.\n *   - Procedure calls (`CALL db.foo()`) are rejected because they can mutate or be slow.\n *\n * String literals and comments are stripped before checking so that keywords inside quoted\n * strings (e.g. a node `name` literal containing the word `DELETE`) don't trip the guard.\n */\n\nexport interface CypherGuardResult {\n  ok: boolean;\n  /** When `ok === false`, a one-line reason suitable for surfacing back to the LLM. */\n  reason?: string;\n  /** The normalized statement that was validated (comments and strings stripped). */\n  normalized?: string;\n}\n\nconst ALLOWED_LEADING_CLAUSES = [\"MATCH\", \"OPTIONAL MATCH\", \"WITH\", \"UNWIND\", \"RETURN\"] as const;\n\nconst FORBIDDEN_KEYWORDS = [\n  \"CREATE\",\n  \"MERGE\",\n  \"DELETE\",\n  \"DETACH DELETE\",\n  \"SET\",\n  \"REMOVE\",\n  \"DROP\",\n  \"FOREACH\",\n  \"LOAD CSV\",\n] as const;\n\n/** Strip `//` and `/* ... *\\/` style comments. */\nfunction stripComments(src: string): string {\n  return src.replace(/\\/\\*[\\s\\S]*?\\*\\//g, \" \").replace(/\\/\\/[^\\n]*/g, \" \");\n}\n\n/** Replace string literal contents with empty quotes so keywords inside strings are ignored. */\nfunction stripStringLiterals(src: string): string {\n  return src\n    .replace(/'(?:\\\\.|[^'\\\\])*'/g, \"''\")\n    .replace(/\"(?:\\\\.|[^\"\\\\])*\"/g, '\"\"')\n    .replace(/`(?:\\\\.|[^`\\\\])*`/g, \"``\");\n}\n\nfunction startsWithAllowedClause(upper: string): boolean {\n  for (const clause of ALLOWED_LEADING_CLAUSES) {\n    if (upper.startsWith(`${clause} `) || upper === clause) {\n      return true;\n    }\n  }\n  return false;\n}\n\nfunction findForbiddenKeyword(upper: string): string | null {\n  for (const kw of FORBIDDEN_KEYWORDS) {\n    const pattern = new RegExp(`\\\\b${kw.replace(/\\s+/g, \"\\\\s+\")}\\\\b`);\n    if (pattern.test(upper)) {\n      return kw;\n    }\n  }\n  return null;\n}\n\nexport function validateReadOnlyCypher(input: string): CypherGuardResult {\n  if (typeof input !== \"string\" || input.trim().length === 0) {\n    return { ok: false, reason: \"Empty Cypher statement.\" };\n  }\n\n  const withoutComments = stripComments(input);\n  const sanitized = stripStringLiterals(withoutComments).trim();\n\n  const withoutTrailingSemicolon = sanitized.replace(/;\\s*$/, \"\");\n  if (withoutTrailingSemicolon.includes(\";\")) {\n    return {\n      ok: false,\n      reason: \"Multiple statements are not allowed (found `;`).\",\n      normalized: sanitized,\n    };\n  }\n\n  const normalized = withoutTrailingSemicolon.trim();\n  const upper = normalized.toUpperCase().replace(/\\s+/g, \" \").trim();\n\n  if (!startsWithAllowedClause(upper)) {\n    return {\n      ok: false,\n      reason: `Statement must start with one of: ${ALLOWED_LEADING_CLAUSES.join(\", \")}.`,\n      normalized,\n    };\n  }\n\n  const forbidden = findForbiddenKeyword(upper);\n  if (forbidden) {\n    return {\n      ok: false,\n      reason: `Mutating keyword '${forbidden}' is not allowed in nl_query results.`,\n      normalized,\n    };\n  }\n\n  if (/\\bCALL\\s*\\{/.test(upper)) {\n    return {\n      ok: false,\n      reason: \"CALL { ... } subqueries are not allowed (they may hide writes).\",\n      normalized,\n    };\n  }\n\n  if (/\\bCALL\\s+[A-Z0-9_.]+\\s*\\(/.test(upper)) {\n    return {\n      ok: false,\n      reason: \"Procedure calls (CALL ns.proc(...)) are not allowed.\",\n      normalized,\n    };\n  }\n\n  return { ok: true, normalized };\n}\n","import { z } from \"zod\";\nimport type { ToolDefinition } from \"./types.js\";\nimport { cachedJsonResult, jsonResult } from \"./util.js\";\n\nconst inputSchema = {\n  description: z\n    .string()\n    .min(1)\n    .describe(\"Natural-language description of the symbol you are looking for.\"),\n  k: z.number().int().positive().max(50).default(10).describe(\"Number of nearest neighbours.\"),\n};\n\nexport const searchSemanticTool: ToolDefinition<typeof inputSchema> = {\n  name: \"search_semantic\",\n  config: {\n    title: \"Semantic Symbol Search\",\n    description:\n      \"Embed the supplied description via the configured LLM router, then run a vector KNN over indexed symbol embeddings.\",\n    inputSchema,\n    annotations: { readOnlyHint: true, idempotentHint: true },\n  },\n  handler: async ({ description, k }, deps) => {\n    const [embedding] = await deps.llm.embed([description]);\n    if (!embedding) {\n      return jsonResult(\n        { error: \"LLM router returned no embedding for the query.\" },\n        { isError: true },\n      );\n    }\n    const namespace = `${deps.llm.embeddingNamespace.provider}:${deps.llm.embeddingNamespace.model}:${deps.llm.embeddingNamespace.dimension}`;\n    const dim = deps.llm.embeddingNamespace.dimension;\n    return cachedJsonResult(\"search_semantic\", { description, k, namespace }, deps, async () => {\n      // Brute-force cosine similarity over `Symbol.embedding`. v0.1.x deliberately skips\n      // Kuzu's HNSW index because kuzudb/kuzu#5965 / #6040 make vector-indexed columns\n      // unwritable. `array_cosine_similarity` is a core Kuzu function (no extension), and\n      // for Phase 1 corpus sizes (tens of thousands of symbols) it returns in <10ms. The\n      // namespace filter prevents cross-provider drift from poisoning results.\n      //\n      // The query vector arrives as a plain JS array; Kuzu won't auto-infer FLOAT[N], so\n      // we CAST it inline to match the column's fixed-dimension type.\n      const rows = await deps.graph.query(\n        `MATCH (s:Symbol)\n           WHERE s.embeddingNamespace = $ns\n           RETURN s.id AS id, s.name AS name, s.kind AS kind, s.path AS path,\n                  s.lineStart AS line, s.signature AS signature,\n                  array_cosine_similarity(s.embedding, CAST($vec AS FLOAT[${dim}])) AS score\n           ORDER BY score DESC\n           LIMIT $k`,\n        { vec: embedding, k, ns: namespace },\n      );\n      return { description, k, namespace, count: rows.length, matches: rows };\n    });\n  },\n};\n","import { z } from \"zod\";\nimport type { ToolDefinition } from \"./types.js\";\nimport { cachedJsonResult } from \"./util.js\";\n\nconst inputSchema = {\n  query: z.string().min(1).describe(\"Substring to match against symbol names (case-insensitive).\"),\n  kind: z\n    .enum([\"File\", \"Function\", \"Class\", \"Interface\", \"Component\", \"Route\", \"Variable\"])\n    .optional()\n    .describe(\"Optional filter by node kind.\"),\n  limit: z.number().int().positive().max(200).default(25),\n};\n\nexport const searchSymbolTool: ToolDefinition<typeof inputSchema> = {\n  name: \"search_symbol\",\n  config: {\n    title: \"Search Symbol\",\n    description:\n      \"Find functions, classes, components, routes, or variables by case-insensitive substring match on the symbol name.\",\n    inputSchema,\n    annotations: { readOnlyHint: true, idempotentHint: true },\n  },\n  handler: async ({ query, kind, limit }, deps) =>\n    cachedJsonResult(\"search_symbol\", { query, kind, limit }, deps, async () => {\n      // Kuzu stores all symbols under a single `:Symbol` table with a `kind` discriminator\n      // column, so the kind filter is a `WHERE s.kind = $kind` rather than a label.\n      const cypher = kind\n        ? `MATCH (s:Symbol)\n           WHERE s.kind = $kind AND lower(s.name) CONTAINS lower($q)\n           RETURN s.id AS id, s.name AS name, s.kind AS kind, s.path AS path,\n                  s.lineStart AS line, s.signature AS signature\n           ORDER BY s.name LIMIT $limit`\n        : `MATCH (s:Symbol)\n           WHERE s.name IS NOT NULL AND lower(s.name) CONTAINS lower($q)\n           RETURN s.id AS id, s.name AS name, s.kind AS kind, s.path AS path,\n                  s.lineStart AS line, s.signature AS signature\n           ORDER BY s.name LIMIT $limit`;\n      const rows = await deps.graph.query(cypher, { q: query, limit, kind: kind ?? null });\n      return { query, kind: kind ?? null, count: rows.length, matches: rows };\n    }),\n};\n","import type { McpServer } from \"@modelcontextprotocol/sdk/server/mcp.js\";\nimport type { ToolDeps } from \"../types.js\";\nimport { affectedByTool } from \"./affected-by.js\";\nimport { blastRadiusTool } from \"./blast-radius.js\";\nimport { findCallersTool } from \"./find-callers.js\";\nimport { findFileTool } from \"./find-file.js\";\nimport { getComponentTreeTool } from \"./get-component-tree.js\";\nimport { getDependenciesTool } from \"./get-dependencies.js\";\nimport { getFileContextTool } from \"./get-file-context.js\";\nimport { nlQueryTool } from \"./nl-query.js\";\nimport { searchSemanticTool } from \"./search-semantic.js\";\nimport { searchSymbolTool } from \"./search-symbol.js\";\nimport type { ToolDefinition, ToolInputShape } from \"./types.js\";\nimport { jsonResult } from \"./util.js\";\n\nexport const ALL_TOOLS: ReadonlyArray<ToolDefinition<ToolInputShape>> = [\n  searchSymbolTool,\n  findFileTool,\n  searchSemanticTool,\n  getFileContextTool,\n  findCallersTool,\n  getComponentTreeTool,\n  affectedByTool,\n  getDependenciesTool,\n  blastRadiusTool,\n  nlQueryTool,\n] as unknown as ReadonlyArray<ToolDefinition<ToolInputShape>>;\n\n/** Register every Phase-2 tool with the provided MCP server, wired to the given deps. */\nexport function registerAllTools(server: McpServer, deps: ToolDeps): void {\n  for (const tool of ALL_TOOLS) {\n    server.registerTool(tool.name, tool.config, async (args) => {\n      try {\n        return await tool.handler(args as never, deps);\n      } catch (err) {\n        deps.logger?.error(\"tool handler threw\", {\n          tool: tool.name,\n          error: err instanceof Error ? err.message : String(err),\n        });\n        return jsonResult(\n          {\n            tool: tool.name,\n            error: err instanceof Error ? err.message : String(err),\n          },\n          { isError: true },\n        );\n      }\n    });\n  }\n}\n\nexport {\n  affectedByTool,\n  blastRadiusTool,\n  findCallersTool,\n  findFileTool,\n  getComponentTreeTool,\n  getDependenciesTool,\n  getFileContextTool,\n  nlQueryTool,\n  searchSemanticTool,\n  searchSymbolTool,\n};\nexport type { ToolDefinition, ToolInputShape } from \"./types.js\";\n","import type { Request, Response, Router } from \"express\";\nimport { EDGE_KINDS } from \"@codegraph/shared\";\nimport type { GraphClient } from \"./types.js\";\n\ntype GraphRow = Record<string, unknown>;\n\n/**\n * Register unauthenticated viewer API routes on the given Express router:\n *\n *   GET /api/repos          → { repos: string[] }\n *   GET /api/graph?repoId=  → { repoId, nodes: [...], edges: [...] }\n *\n * These routes are intentionally public (no bearer auth) because they are\n * served only on the loopback interface and consumed by the browser viewer\n * on the same machine. The MCP/messages routes remain auth-gated.\n */\nexport function registerViewerApiRoutes(router: Router, graph: GraphClient): void {\n  router.get(\"/api/repos\", async (_req: Request, res: Response) => {\n    try {\n      const rows = await graph.query<GraphRow>(\n        \"MATCH (n:Symbol) RETURN DISTINCT n.repoId AS repoId ORDER BY repoId\",\n      );\n      const repos = rows\n        .map((r) => r.repoId)\n        .filter((id): id is string => typeof id === \"string\" && id.length > 0);\n      res.json({ repos });\n    } catch (err) {\n      res.status(500).json({ error: String(err) });\n    }\n  });\n\n  router.get(\"/api/graph\", async (req: Request, res: Response) => {\n    const repoId = req.query.repoId as string | undefined;\n    if (!repoId) {\n      res.status(400).json({ error: \"Missing repoId query parameter\" });\n      return;\n    }\n    const limit = Math.min(Number(req.query.limit) || 600, 2000);\n\n    try {\n      const nodeRows = await graph.query<GraphRow>(\n        `MATCH (n:Symbol)\n         WHERE n.repoId = $repoId\n         RETURN n.id AS id, n.kind AS kind, n.name AS name,\n                n.path AS path, n.lineStart AS lineStart\n         ORDER BY n.path ASC, n.lineStart ASC\n         LIMIT $limit`,\n        { repoId, limit },\n      );\n\n      // Restrict edges to the nodes we just fetched so the client never sees\n      // edges to nodes it doesn't have. Build the set of returned node ids.\n      const nodeIds = new Set(\n        nodeRows\n          .map((n) => n.id)\n          .filter((v): v is string => typeof v === \"string\"),\n      );\n\n      // Fetch edges per kind (Kuzu stores each rel-table separately).\n      // NB: `from`/`to` are reserved Cypher keywords; alias with non-reserved names.\n      const edgeRows: Array<{ from: string; to: string; kind: string }> = [];\n      const edgeLimit = limit * 3;\n      for (const kind of EDGE_KINDS) {\n        const rows = await graph.query<GraphRow>(\n          `MATCH (a:Symbol)-[:${kind}]->(b:Symbol)\n           WHERE a.repoId = $repoId AND b.repoId = $repoId\n           RETURN a.id AS fromId, b.id AS toId\n           LIMIT $edgeLimit`,\n          { repoId, edgeLimit },\n        );\n        for (const r of rows) {\n          const from = r.fromId;\n          const to = r.toId;\n          if (typeof from !== \"string\" || typeof to !== \"string\") continue;\n          if (!nodeIds.has(from) || !nodeIds.has(to)) continue;\n          edgeRows.push({ from, to, kind });\n        }\n      }\n\n      res.json({ repoId, nodes: nodeRows, edges: edgeRows });\n    } catch (err) {\n      const message = err instanceof Error ? err.message : String(err);\n      // Surface as a structured error so the viewer can show something useful.\n      res.status(500).json({ error: message });\n    }\n  });\n}\n","import type { Logger } from \"./types.js\";\n\n/** Minimal stderr JSON logger. Stdout is reserved for MCP-over-stdio future use. */\nexport function createConsoleLogger(level: \"info\" | \"warn\" | \"error\" = \"info\"): Logger {\n  const levels = { info: 10, warn: 20, error: 30 };\n  const min = levels[level];\n  const emit = (lvl: \"info\" | \"warn\" | \"error\", msg: string, meta?: Record<string, unknown>) => {\n    if (levels[lvl] < min) return;\n    const line = JSON.stringify({ ts: new Date().toISOString(), level: lvl, msg, ...meta });\n    process.stderr.write(`${line}\\n`);\n  };\n  return {\n    info: (msg, meta) => emit(\"info\", msg, meta),\n    warn: (msg, meta) => emit(\"warn\", msg, meta),\n    error: (msg, meta) => emit(\"error\", msg, meta),\n  };\n}\n","import { realpathSync } from \"node:fs\";\nimport { dirname, join } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport { startMcpServer } from \"@codegraph/mcp-server\";\nimport kleur from \"kleur\";\nimport { loadConfig } from \"../config-store.js\";\nimport { makeSpinner, renderServeBanner } from \"../ui.js\";\n\n/**\n * Resolve the viewer static assets directory relative to the running CLI build.\n *\n * Tries, in order:\n *   1. `import.meta.url` — the path of the bundled chunk this code lives in\n *      (e.g. `<pkg>/dist/chunk-XXX.js`). Walking up two levels then into\n *      `viewer/` lands at the published `<pkg>/viewer/index.html`.\n *   2. `realpathSync(process.argv[1])` — resolves the `/usr/local/bin/codegraph`\n *      symlink that `npm i -g` creates to the actual install path.\n *\n * Falls back to a non-existent path; `express.static` will then simply 404 and\n * the user can still hit `/mcp` normally.\n */\nfunction resolveViewerDir(): string {\n  try {\n    const here = fileURLToPath(import.meta.url);\n    return join(dirname(here), \"..\", \"viewer\");\n  } catch {\n    // ignore — fall through to argv-based resolution\n  }\n  try {\n    const bin = realpathSync(process.argv[1] ?? \"\");\n    return join(dirname(bin), \"..\", \"viewer\");\n  } catch {\n    return join(dirname(process.argv[1] ?? \"\"), \"..\", \"viewer\");\n  }\n}\n\nexport interface ServeCommandOptions {\n  port?: number;\n  host?: string;\n  dbPath?: string;\n}\n\n/**\n * Provider -> env var lookup. Mirrors `doctor.ts`'s `providerEnvVar`; kept inline here\n * to avoid a CLI<->CLI internal import dependency.\n */\nfunction providerEnvVar(provider: string): string | null {\n  if (provider === \"openai\") return \"OPENAI_API_KEY\";\n  if (provider === \"anthropic\") return \"ANTHROPIC_API_KEY\";\n  if (provider === \"google\") return \"GOOGLE_GENERATIVE_AI_API_KEY\";\n  return null;\n}\n\n/**\n * Boots the local MCP server in-process. The bootstrap reads `~/.codegraph/config.json`\n * (generating a bearer token on first run), connects to the embedded Kuzu graph, and\n * starts the SSE listener.\n *\n * SIGINT / SIGTERM trigger a graceful shutdown. The shutdown closes active SSE\n * transports, releases the HTTP server, and disposes the graph + cache.\n */\nexport async function runServeCommand(opts: ServeCommandOptions = {}): Promise<void> {\n  // Warn loudly if the LLM provider expects an env var that isn't present in *this*\n  // process. The CLI inherits the shell's environment, but `serve` is often launched\n  // detached (e.g. by an editor's MCP integration) and the bug is invisible until the\n  // first `search_semantic` request fails with \"OPENAI_API_KEY missing\". We catch it\n  // here so the user sees the problem at startup, not at first use.\n  try {\n    const config = await loadConfig();\n    const missing: string[] = [];\n    for (const provider of [\n      config.llm.generation.provider,\n      config.llm.embeddings.provider,\n    ]) {\n      const envVar = providerEnvVar(provider);\n      if (envVar && !process.env[envVar] && !missing.includes(envVar)) {\n        missing.push(envVar);\n      }\n    }\n    if (missing.length > 0) {\n      process.stderr.write(\n        `${kleur.yellow(\n          `! ${missing.join(\", \")} not set in serve's environment. ` +\n            `Semantic search and nl_query will fail until the variable is exported before \\`codegraph serve\\`.`,\n        )}\\n`,\n      );\n    }\n  } catch {\n    // No config yet (first run) - the server's own bootstrap will create one. Skip.\n  }\n\n  const spinner = makeSpinner(\"Booting MCP server\").start();\n  let started: Awaited<ReturnType<typeof startMcpServer>>;\n  try {\n    started = await startMcpServer({\n      ...(opts.port !== undefined ? { port: opts.port } : {}),\n      ...(opts.host !== undefined ? { host: opts.host } : {}),\n      ...(opts.dbPath !== undefined ? { dbPath: opts.dbPath } : {}),\n      viewerDir: resolveViewerDir(),\n    });\n    spinner.stop();\n  } catch (err) {\n    spinner.fail(\"Server failed to start\");\n    throw err;\n  }\n\n  const base = `http://${started.address.host}:${started.address.port}`;\n  const url = `${base}/mcp`;\n  const viewerUrl = `${base}/viewer`;\n  const tokenHint =\n    \"bearer token at ~/.codegraph/config.json (codegraph config show to view)\";\n  process.stdout.write(`${renderServeBanner(url, tokenHint, viewerUrl)}\\n`);\n\n  const shutdown = async (signal: NodeJS.Signals): Promise<never> => {\n    process.stderr.write(`\\nshutting down (${signal})...\\n`);\n    try {\n      await started.close();\n    } catch (err) {\n      process.stderr.write(\n        `shutdown failed: ${err instanceof Error ? err.message : String(err)}\\n`,\n      );\n    }\n    process.exit(0);\n  };\n  process.once(\"SIGINT\", shutdown);\n  process.once(\"SIGTERM\", shutdown);\n\n  // Hold the event loop open so the SSE listener keeps accepting connections. The signal\n  // handlers above terminate the process when triggered.\n  await new Promise<void>(() => {});\n}\n","import { exec } from \"node:child_process\";\nimport { MCP_PORT } from \"@codegraph/mcp-server\";\nimport kleur from \"kleur\";\n\nconst DEFAULT_HOST = \"127.0.0.1\";\n\n/**\n * Open `url` in the OS default browser.\n * Uses `open` (macOS/BSD), `xdg-open` (Linux), or `start` (Windows).\n */\nfunction openBrowser(url: string): void {\n  const cmd =\n    process.platform === \"darwin\"\n      ? `open \"${url}\"`\n      : process.platform === \"win32\"\n        ? `start \"\" \"${url}\"`\n        : `xdg-open \"${url}\"`;\n  exec(cmd, (err) => {\n    if (err) {\n      process.stderr.write(\n        `${kleur.yellow(\"!\")} Could not open browser automatically. Open manually:\\n  ${kleur.cyan(url)}\\n`,\n      );\n    }\n  });\n}\n\n/**\n * Probe whether the MCP server is already listening by hitting /healthz.\n * Returns true when the server responds 200, false on any error/non-200.\n */\nasync function isServerUp(host: string, port: number): Promise<boolean> {\n  try {\n    const res = await fetch(`http://${host}:${port}/healthz`, {\n      signal: AbortSignal.timeout(1500),\n    });\n    return res.ok;\n  } catch {\n    return false;\n  }\n}\n\nexport interface ViewCommandOptions {\n  port?: number;\n  host?: string;\n}\n\n/**\n * Open the CodeGraph graph viewer in the default browser.\n *\n * Checks whether `codegraph serve` is running first. If the server is not up,\n * prints a helpful message and exits. If it is up, opens\n * `http://<host>:<port>/viewer` in the default browser.\n */\nexport async function runViewCommand(opts: ViewCommandOptions = {}): Promise<void> {\n  const host = opts.host ?? DEFAULT_HOST;\n  const port = opts.port ?? MCP_PORT;\n  const viewerUrl = `http://${host}:${port}/viewer`;\n\n  process.stdout.write(kleur.dim(`Checking server at http://${host}:${port}/healthz …\\n`));\n\n  const up = await isServerUp(host, port);\n\n  if (!up) {\n    process.stdout.write(\n      [\n        \"\",\n        `${kleur.red(\"✗\")} CodeGraph server is not running.`,\n        \"\",\n        `  Start it with:  ${kleur.cyan(\"codegraph serve\")}`,\n        `  Then re-run:    ${kleur.cyan(\"codegraph view\")}`,\n        \"\",\n      ].join(\"\\n\"),\n    );\n    process.exit(1);\n  }\n\n  process.stdout.write(`${kleur.green(\"✓\")} Server is up. Opening ${kleur.cyan(viewerUrl)} …\\n`);\n  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