@larsgw/formica 0.9.2 → 0.10.0

package/test/resources.js

@@ -1,374 +0,0 @@
-const { suite, test } = require('node:test')
-const assert = require('assert')
-
-const { catalog, resources } = require('../lib')
-
-suite('catalog', () => {
-    test('reports missing required fields', () => {
-        const errors = catalog.loadData(`id
-B1`, 'catalog').validate()
-        assert.deepStrictEqual(errors, [
-            { entity: 'B1', field: 'title', error: 'Value(s) required but missing' },
-            { entity: 'B1', field: 'entry_type', error: 'Value(s) required but missing' },
-            { entity: 'B1', field: 'language', error: 'Value(s) required but missing' },
-            { entity: 'B1', field: 'key_type', error: 'Value(s) required but missing' },
-            { entity: 'B1', field: 'taxon', error: 'Value(s) required but missing' },
-            { entity: 'B1', field: 'region', error: 'Value(s) required but missing' }
-        ])
-    })
-})
-
-suite('resources', () => {
-    test('parses author with initials', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [family, genus, species]
----
-
-    Dolichurus haemorrhous A. Costa, 1886
-  Dolichurus A. Costa, 1886
-    [indet]
-Sphecidae A. Costa, 1886
-    [indet]
-`, 'T1')
-        assert.deepStrictEqual(Object.values(resource.taxa).map(taxon => taxon.scientificNameAuthorship), Array(3).fill('A. Costa, 1886'))
-    })
-
-    test('parses synonyms starting with intraspecific ranks', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [species]
----
-
-Lygaeus equestris (Linnaeus, 1758)
-  = f. lactans Horváth, 1899
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Lygaeus equestris f. lactans Horváth, 1899')
-    })
-
-    test('parses accepted taxa starting with intraspecific ranks', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [species, form]
----
-
-Lygaeus equestris (Linnaeus, 1758)
-  f. lactans Horváth, 1899
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Lygaeus equestris f. lactans Horváth, 1899')
-    })
-
-    test('parses names containing non-ASCII characters', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [species]
----
-
-Nematus fåhraei Thomson
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:1'].scientificName, 'Nematus fåhraei Thomson')
-    })
-
-    test('parses synonyms in different genera', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [species]
----
-
-Katamenes arbustorum subsp. burlinii
-  > arbustorum subsp. burlinii
-  = Eumenes arbustorum var. burlinii
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Eumenes arbustorum var. burlinii')
-    })
-
-    test('parses species without generic names', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [genus, subgenus, species]
----
-
-Microdynerus Thomson, 1874
-  Alastorynerus Blüthgen, 1938
-    microdynerus (Dalla Torre, 1889)
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:3'].scientificName, 'Microdynerus microdynerus (Dalla Torre, 1889)')
-    })
-
-    test('parses hybrids', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [species]
----
-
-Rumex conglomeratus x maritimus
-Tilia x vulgaris
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:1'].scientificName, 'Rumex conglomeratus×maritimus')
-        assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Tilia ×vulgaris')
-    })
-
-    test('parses cross-genus hybrids', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [genus, species]
----
-
-x Triticosecale
-  [indet]
-x Festulpia
-  Festuca_rubra x Vulpia_bromoides
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:1'].scientificName, '×Triticosecale')
-        assert.strictEqual(resource.taxa['T1:1:2'].scientificName, '×Festulpia')
-        assert.strictEqual(resource.taxa['T1:1:3'].scientificName, '×Festulpia Festuca rubra×Vulpia bromoides')
-    })
-
-    test('parses cross-genus hybrids without parent context', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [species]
----
-
-x Festulpia Festuca_rubra x Vulpia_bromoides
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:1'].scientificName, '×Festulpia Festuca rubra×Vulpia bromoides')
-        assert.strictEqual(resource.taxa['T1:1:1'].verbatimIdentification, '× Festulpia Festuca rubra × Vulpia bromoides')
-    })
-
-    test('handles skips in ranks', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [family, genus, species]
----
-
-Apidae
-    Apis mellifera
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Apis mellifera')
-        assert.strictEqual(resource.taxa['T1:1:2'].genus, 'Apis')
-        assert.strictEqual(resource.taxa['T1:1:2'].taxonRank, 'species')
-    })
-
-    test('parses genera with subgenus-rank synonyms', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [genus]
----
-
-Ectemnius Dahlbom
-  = Crabro (Ectemnius) Dahlbom
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:2'].taxonRank, 'subgenus')
-        assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Ectemnius Dahlbom')
-        assert.strictEqual(resource.taxa['T1:1:2'].genericName, 'Crabro')
-    })
-
-    test('parses genera with like-name subgenera', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [genus, subgenus]
----
-
-Polistes Latreille, 1802
-  Polistes Latreille, 1802
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:2'].taxonRank, 'subgenus')
-        assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Polistes Latreille, 1802')
-        assert.strictEqual(resource.taxa['T1:1:2'].genericName, 'Polistes')
-    })
-
-    test('handles clusters', () => {
-        const [resource] = resources.parseTextFile(`---
-levels: [genus, species]
----
-
-Eurydema Laporte, 1833
-  oleracea (Linnaeus, 1758)
-  [1] rotundicollis (Dohrn, 1860)
-  [1] fieberi Schummel, 1837
-  [2] ornata (Linnaeus, 1758)
-  [2] ventralis Kolenati, 1846
-  [_] eckerleini Josifov, 1961
-`, 'T1')
-        assert.strictEqual(resource.taxa['T1:1:2'].dynamicProperties, undefined)
-        assert.strictEqual(resource.taxa['T1:1:3'].dynamicProperties, '{"indistinguishableFrom":["T1:1:4"]}')
-        assert.strictEqual(resource.taxa['T1:1:4'].dynamicProperties, '{"indistinguishableFrom":["T1:1:3"]}')
-        assert.strictEqual(resource.taxa['T1:1:5'].dynamicProperties, '{"indistinguishableFrom":["T1:1:6"]}')
-        assert.strictEqual(resource.taxa['T1:1:6'].dynamicProperties, '{"indistinguishableFrom":["T1:1:5"]}')
-        assert.strictEqual(resource.taxa['T1:1:7'].dynamicProperties, '{"identifiable":false}')
-    })
-
-    suite('leaf taxa checks', () => {
-        test('errors for missing leaf taxa', () => {
-            assert.throws(() => {
-                resources.parseTextFile(`---
-levels: [family, genus, species]
----
-
-Cydnidae
-Cydnidae
-  Legnotus
-    limbosus`, 'T1')
-            })
-        })
-
-        test('does not validate "indet." lines', () => {
-            const [resource] = resources.parseTextFile(`---
-levels: [genus, species]
----
-
-Drymus
-  [indet]
-`, 'T1')
-            assert.strictEqual(resource.taxa['T1:1:1'].scientificName, 'Drymus')
-        })
-
-        test('synonyms do not break recognition of missing leaf taxa (1)', () => {
-            const [resource] = resources.parseTextFile(`---
-levels: [genus, subgenus, species]
----
-
-Bombus
-  = Psithyrus
-  Bombus
-    pascuorum
-`, 'T1')
-            assert.strictEqual(resource.taxa['T1:1:4'].scientificName, 'Bombus pascuorum')
-        })
-
-        test('synonyms do not break recognition of missing leaf taxa (2)', () => {
-            assert.throws(() => {
-            resources.parseTextFile(`---
-levels: [genus, subgenus, species]
----
-
-Bombus
-  Psithyrus
-    = Psithirus
-  Bombus
-    pascuorum
-`, 'T1')
-            })
-        })
-
-        test('synonyms do not break recognition of missing leaf taxa (3)', () => {
-            assert.throws(() => {
-                resources.parseTextFile(`---
-levels: [family, genus, species]
----
-
-Acanthosomidae
-  = Acanthosomatidae
-Cydnidae
-  Legnotus
-    limbosus
-`, 'T1')
-            })
-        })
-    })
-
-    suite('corrections', () => {
-        test('outputs corrected generic names', () => {
-            const [resource] = resources.parseTextFile(`---
-levels: [genus, species]
----
-
-Bogdania Kerzhner, 1964
-  > Bogdiana Kerzhner, 1964
-  myrmica Kerzhner, 1964
-`, 'T1')
-            assert.strictEqual(resource.taxa['T1:1:1'].scientificName, 'Bogdiana Kerzhner, 1964')
-            assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Bogdiana myrmica Kerzhner, 1964')
-        })
-
-        test('does not validate name with correction', () => {
-            const [resource] = resources.parseTextFile(`---
-levels: [species]
----
-
-Clytochrysus lapidarius (Panzer, 1804)
-  = Crabo chrysostomus Lepeletier & Brullé, 1835
-    > Crabro chrysostomus Lepeletier & Brullé, 1835
-`, 'T1')
-            assert.strictEqual(resource.taxa['T1:1:1'].scientificName, 'Clytochrysus lapidarius (Panzer, 1804)')
-        })
-
-        test('parses invalid but corrected name', () => {
-            const [resource] = resources.parseTextFile(`---
-levels: [species]
----
-
-Crabro Kiesenwetteri A. Morawitz. 1866
-  > Crabro kiesenwetteri A. Morawitz. 1866
-`, 'T1')
-            assert.strictEqual(resource.taxa['T1:1:1'].scientificName, 'Crabro kiesenwetteri A. Morawitz. 1866')
-            assert.strictEqual(resource.taxa['T1:1:1'].scientificNameAuthorship, 'A. Morawitz. 1866')
-            assert.strictEqual(resource.taxa['T1:1:1'].verbatimIdentification, 'Crabro Kiesenwetteri A. Morawitz. 1866')
-        })
-
-        test('parses children of invalid but corrected name', () => {
-            const [resource] = resources.parseTextFile(`---
-levels: [genus, species]
----
-
-Pirus L.
-  > Pyrus L.
-  aucuparia Gaertn.
-  Pirus domestica Sm.
-  Pirus aria Ehrh.
-    > Pyrus aria Ehrh.
-`, 'T1')
-            assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Pyrus aucuparia Gaertn.')
-            assert.strictEqual(resource.taxa['T1:1:3'].scientificName, 'Pyrus domestica Sm.')
-            assert.strictEqual(resource.taxa['T1:1:4'].scientificName, 'Pyrus aria Ehrh.')
-        })
-
-        test('does not keep parts of invalid but corrected name', () => {
-            const [resource] = resources.parseTextFile(`---
-levels: [species]
----
-
-Scolia 5-punctata FABRICIUS, 1781
-  > Scolia quinquepunctata FABRICIUS, 1781
-`, 'T1')
-            assert.strictEqual(resource.taxa['T1:1:1'].scientificName, 'Scolia quinquepunctata Fabricius, 1781')
-            assert.strictEqual(resource.taxa['T1:1:1'].verbatimIdentification, 'Scolia 5-punctata FABRICIUS, 1781')
-        })
-
-        test('make correct diff when last line changes', () => {
-            const newText = `---
-levels: [species]
----
-
-Bittacus Hageni Brauer
-  > Bittacus hageni Brauer
-`
-            const oldText = `---
-levels: [genus, species]
----
-
-Bittacus hageni Brauer
-`
-
-            const [resource] = resources.parseTextFile(newText, 'T1', { txt: oldText, dwc: [[null, ['T:1:1'], ['T:1:2']]] })
-            assert.strictEqual(resource.taxa['T1:1:1'].scientificName, 'Bittacus hageni Brauer')
-            assert.strictEqual(resource.taxa['T1:1:1'].verbatimIdentification, 'Bittacus Hageni Brauer')
-        })
-
-        test('corrections of synonyms are correctly applied', () => {
-            const [resource] = resources.parseTextFile(`---
-levels: [genus, subgenus, species]
----
-
-Lasius F.
-  = Domisthorpea Mor. & Drnt., 1915
-    > Donisthorpea Mor. & Drnt., 1915
-    fuliginosus Latr.
-`, 'T1')
-            assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Donisthorpea Mor. & Drnt., 1915')
-            assert.strictEqual(resource.taxa['T1:1:3'].scientificName, 'Lasius fuliginosus Latr.')
-        })
-
-        test('corrections are correctly applied', () => {
-            const [resource] = resources.parseTextFile(`---
-levels: [genus, species]
----
-
-Neopachygaster Austin, 1901
-  > Neopachygaster Austen, 1901
-  meromelas (Dufour, 1841)
-`, 'T1')
-            assert.strictEqual(resource.taxa['T1:1:1'].scientificName, 'Neopachygaster Austen, 1901')
-            assert.strictEqual(resource.taxa['T1:1:2'].scientificName, 'Neopachygaster meromelas (Dufour, 1841)')
-        })
-    })
-})

package/tsconfig.json

@@ -1,15 +0,0 @@
-{
-  "compilerOptions": {
-    "outDir": "./lib",
-    "target": "es6",
-
-    "noImplicitAny": true,
-    "strictNullChecks": true,
-    "noImplicitThis": true,
-
-    "module": "commonjs",
-    "moduleResolution": "node10",
-    "esModuleInterop": true
-  },
-  "include": ["./src/**/*"]
-}