@larsgw/formica 0.7.3 → 0.8.1

package/lib/resources/parse-text.js

@@ -10,9 +10,43 @@ var __assign = (this && this.__assign) || function () {
     };
     return __assign.apply(this, arguments);
 };
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.parseFileHeader = exports.parseFile = void 0;
-var yaml = require("js-yaml");
+exports.parseFile = parseFile;
+exports.parseFileHeader = parseFileHeader;
+var yaml = __importStar(require("js-yaml"));
 var resource_1 = require("./resource");
 var diff_resource_1 = require("./diff-resource");
 var RANKS = [
@@ -31,19 +65,19 @@ var RANKS = [
     'subtribe',
     'genus',
     'subgenus',
-    'section',
-    'subsection',
-    'series',
+    'section', // not ICZN
+    'subsection', // not ICZN
+    'series', // not ICZN
     'group',
-    'subgroup',
-    'aggregate',
-    'complex',
+    'subgroup', // ...
+    'aggregate', // not ICZN
+    'complex', // not ICZN
     'species',
     'subspecies',
     'variety',
     'form',
-    'aberration',
-    'race',
+    'aberration', // not ICZN
+    'race', // not ICZN
     'stirps' // not ICZN
 ];
 var MAIN_RANKS = [
@@ -111,7 +145,7 @@ var NAME_PATTERN = new RegExp('^' +
     // $2 optional author citation
     '(?: ' +
     // but not auct(t)., etc.
-    '(?!auctt?\\.|(?:syn|comb|sp|spec|nom)\\. n(?:ov)?\\.|s(?:ens[.u]|\\.)|in part|partim)' +
+    '(?!auctt?\\.|(?:syn|comb|sp|spec|nom|gen|subgen)\\. n(?:ov)?\\.|s(?:ens[.u]|\\.)|in part|partim)' +
     '(' +
     // $2.1 anything in parentheses, followed by optional revising author(s)
     '\\(.+?\\)(?:\\s+' + SIMPLE_AUTHOR_PATTERN + ')?' +
@@ -275,6 +309,7 @@ function parseName(name, rank, parent) {
     item.scientificNameAuthorship = capitalizeAuthors(citation);
     item.taxonRemarks = notes;
     item.taxonRank = rank;
+    // @ts-expect-error TS1501: This regular expression flag is only available when targeting 'es6' or later.
     if (/[^\p{L}0-9\u{00D7}\- ]/u.test(taxon)) {
         throw new Error("Taxon name contains unexpected characters: \"".concat(taxon, "\""));
     }
@@ -613,8 +648,6 @@ function parseFile(file, id, old) {
         return parseResourceContent(diff, template, oldIds);
     });
 }
-exports.parseFile = parseFile;
 function parseFileHeader(file) {
     return splitResources(file).map(function (resource) { return parseResource(resource)[0]; });
 }
-exports.parseFileHeader = parseFileHeader;

package/lib/taxon-names/index.js

@@ -1,6 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.amendResource = exports.groupNameMatches = void 0;
+exports.groupNameMatches = groupNameMatches;
+exports.amendResource = amendResource;
 var MINIMUM_PREFIX_LENGTH = 3;
 var VALID_COMMON_PREFIXES = new Set([
     'Plantae|Tracheophyta',
@@ -58,7 +59,6 @@ function groupNameMatches(results) {
     }
     return groupedNameMatches;
 }
-exports.groupNameMatches = groupNameMatches;
 function amendResource(resource, source, matches) {
     for (var id in matches) {
         var match = matches[id];
@@ -76,4 +76,3 @@ function amendResource(resource, source, matches) {
         }
     }
 }
-exports.amendResource = amendResource;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@larsgw/formica",
-  "version": "0.7.3",
+  "version": "0.8.1",
   "description": "SDK and tools for data from the Library of Identification Resources",
   "main": "lib/index.js",
   "types": "lib/index.d.ts",
@@ -33,15 +33,21 @@
   "dependencies": {
     "ietf-language-tag-regex": "^0.0.5",
     "js-yaml": "^4.1.0",
+    "jsonld": "^8.3.3",
+    "n3": "^1.25.2",
     "spdx-license-list": "^6.6.0"
   },
   "devDependencies": {
+    "@eslint/eslintrc": "^3.3.1",
+    "@eslint/js": "^9.26.0",
     "@types/js-yaml": "^4.0.5",
-    "@types/node": "^18.14.1",
-    "@typescript-eslint/eslint-plugin": "^5.54.0",
-    "@typescript-eslint/parser": "^5.54.0",
-    "conventional-changelog-cli": "^3.0.0",
-    "eslint": "^8.35.0",
-    "typescript": "^4.9.5"
+    "@types/jsonld": "^1.5.15",
+    "@types/n3": "^1.24.2",
+    "@types/node": "^22.15.14",
+    "@typescript-eslint/eslint-plugin": "^8.32.0",
+    "@typescript-eslint/parser": "^8.32.0",
+    "conventional-changelog-cli": "^5.0.0",
+    "eslint": "^9.26.0",
+    "typescript": "^5.8.3"
   }
 }