@lannguyensi/harness 0.6.0 → 0.8.0

package/dist/cli/apply/apply.d.ts

@@ -1,9 +1,11 @@
 import { type DriftedAsset } from "../../io/harness-lock.js";
 import { type ThreeStateVerdict } from "../../io/three-state.js";
+import { type Runtime } from "../../policy-packs/index.js";
 export declare const GENERATED_DIRNAME = "harness.generated";
 export declare const SETTINGS_BASENAME = "settings.json";
 export declare const MEMORY_BASENAME = "MEMORY.md";
 export declare const MANIFEST_BASENAME = "harness.yaml";
+export declare const CODEX_CONFIG_BASENAME = "codex/config.toml";
 export interface ApplyOptions {
     configPath?: string;
     homeDir?: string;
@@ -40,6 +42,17 @@ export interface ApplyOptions {
      * settings as-is. Mutually exclusive with --merge.
      */
     force?: boolean;
+    /**
+     * Phase 6 #6 — `--runtime <claude-code|codex>`. Selects which adapter
+     * shape policy-pack hooks expand into and which artefacts apply
+     * writes. Defaults to `claude-code` (settings.json output unchanged
+     * from previous releases). When set to `codex`, settings.json is NOT
+     * written; instead `harness.generated/codex/config.toml` carries the
+     * Codex adapter configuration. The two runtimes are mutually
+     * exclusive in a single apply for v1; cross-runtime applies are a
+     * future enhancement.
+     */
+    runtime?: Runtime;
     /** Test-injectable confirmation prompt; defaults to a stdin readline. */
     prompt?: (message: string) => Promise<string>;
 }

package/dist/cli/apply/apply.js

@@ -36,15 +36,18 @@ import { buildLastApply, readLastApply, sha256Hex, verifyLastApplyIntegrity, wri
 import { unifiedDiff } from "../../io/patch.js";
 import { emitRestartHints } from "../../io/restart-hints.js";
 import { compare } from "../../io/three-state.js";
+import { expandPolicyPacks, DEFAULT_RUNTIME } from "../../policy-packs/index.js";
 import { parseManifest } from "../../schema/index.js";
 import { EX_NOINPUT, HarnessExitError } from "../exit-codes.js";
 import { loadManifest } from "../loader.js";
+import { generateCodexConfig } from "./generate-codex-config.js";
 import { generateMemoryIndex } from "./generate-memory-index.js";
 import { generateSettingsWithWarnings } from "./generate-settings.js";
 export const GENERATED_DIRNAME = "harness.generated";
 export const SETTINGS_BASENAME = "settings.json";
 export const MEMORY_BASENAME = "MEMORY.md";
 export const MANIFEST_BASENAME = "harness.yaml";
+export const CODEX_CONFIG_BASENAME = "codex/config.toml";
 const DRIFT_HINT_MESSAGE = 'run "harness adopt <file>" to capture changes, or re-run with --overwrite-drift to discard them';
 function resolveManifestPath(opts) {
     if (opts.configPath)
@@ -111,18 +114,64 @@ async function readlinePrompt(message) {
     }
 }
 function buildExpectedFiles(manifest, opts) {
-    const settingsResult = generateSettingsWithWarnings(manifest);
-    const settings = `${JSON.stringify(settingsResult.root, null, 2)}\n`;
+    // Phase 6 #2: expand policy_packs[] into hook contributions + extra
+    // generated files BEFORE settings projection. Pack hooks flow through
+    // generate-settings unchanged (they're just additional Hook entries
+    // in the in-memory manifest), and pack files flow through the same
+    // three-state-compare + lock pipeline as settings.json / MEMORY.md.
+    const runtime = opts.runtime ?? DEFAULT_RUNTIME;
+    const packExpansion = expandPolicyPacks(manifest, runtime);
+    const augmentedManifest = packExpansion.hooks.length === 0
+        ? manifest
+        : { ...manifest, hooks: [...manifest.hooks, ...packExpansion.hooks] };
     const indexResult = generateMemoryIndex(manifest, {
         ...(opts.homeDir !== undefined ? { homeDir: opts.homeDir } : {}),
         ...(opts.project !== undefined ? { projectName: opts.project } : {}),
     });
+    // Pack files emit in stable order (sorted by relativePath) so two
+    // applies of the same manifest write byte-identical .last-apply.
+    const packFiles = [...packExpansion.files]
+        .sort((a, b) => (a.relativePath < b.relativePath ? -1 : a.relativePath > b.relativePath ? 1 : 0))
+        .map((f) => ({ basename: f.relativePath, content: f.content }));
+    if (runtime === "codex") {
+        // Codex apply: emit Codex config artefact instead of settings.json.
+        // settings.json is Claude Code's contract and meaningless to Codex.
+        // MEMORY.md and pack instructions.md are runtime-agnostic and ship
+        // unchanged.
+        const codexConfig = generateCodexConfig(augmentedManifest);
+        const codexWarnings = [...codexConfig.warnings];
+        if (packExpansion.permissions) {
+            // Phase 6 #6: pack permission profiles project into Claude Code's
+            // settings.json `permissions` block. The codex generator does not
+            // yet consume them (Codex sandbox shaping is a follow-up); the
+            // contribution would otherwise vanish silently.
+            const totalPerms = packExpansion.permissions.allow.length +
+                packExpansion.permissions.ask.length +
+                packExpansion.permissions.deny.length;
+            if (totalPerms > 0) {
+                codexWarnings.push(`policy_packs contributed ${totalPerms} permission entr${totalPerms === 1 ? "y" : "ies"}; --runtime codex does not yet wire permissions into Codex's sandbox shape (filed as a Phase 6 #6 follow-up)`);
+            }
+        }
+        return {
+            files: [
+                { basename: CODEX_CONFIG_BASENAME, content: codexConfig.content },
+                { basename: MEMORY_BASENAME, content: indexResult.content },
+                ...packFiles,
+            ],
+            warnings: [...codexWarnings, ...indexResult.warnings, ...packExpansion.warnings],
+        };
+    }
+    const settingsResult = generateSettingsWithWarnings(augmentedManifest, {
+        ...(packExpansion.permissions && { packPermissions: packExpansion.permissions }),
+    });
+    const settings = `${JSON.stringify(settingsResult.root, null, 2)}\n`;
     return {
         files: [
             { basename: SETTINGS_BASENAME, content: settings },
             { basename: MEMORY_BASENAME, content: indexResult.content },
+            ...packFiles,
         ],
-        warnings: [...settingsResult.warnings, ...indexResult.warnings],
+        warnings: [...settingsResult.warnings, ...indexResult.warnings, ...packExpansion.warnings],
     };
 }
 function readOnDisk(filePath) {
@@ -220,6 +269,13 @@ export async function apply(opts = {}) {
     if (!targetPath && (opts.merge || opts.force)) {
         throw new HarnessExitError(`--${opts.merge ? "merge" : "force"} requires --target`, EX_NOINPUT);
     }
+    // Phase 6 #6: --target wires the generated settings.json into a
+    // Claude Code path. The runtime=codex branch does not produce
+    // settings.json at all, so the combination is incoherent. Reject
+    // early instead of writing a half-broken state.
+    if (targetPath && opts.runtime === "codex") {
+        throw new HarnessExitError("--target is incompatible with --runtime codex (target wires Claude Code's settings.json)", EX_NOINPUT);
+    }
     let targetContent;
     let targetMergeSummary;
     let targetChanged = false;

package/dist/cli/apply/apply.js.map

@@ -1 +1 @@
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package/dist/cli/apply/generate-codex-config.d.ts

@@ -0,0 +1,6 @@
+import type { Manifest } from "../../schema/index.js";
+export interface CodexConfigResult {
+    content: string;
+    warnings: string[];
+}
+export declare function generateCodexConfig(manifest: Manifest): CodexConfigResult;

package/dist/cli/apply/generate-codex-config.js

@@ -0,0 +1,149 @@
+// Phase 6 #6 — Codex config artefact generator.
+//
+// Output shape: a TOML document the operator copies into
+// `~/.codex/config.toml` (or layers via Codex's config-merge mechanism).
+// We do NOT emit a complete Codex config: only the harness-managed
+// hook stanzas the policy pack contributed. Operators keep their own
+// model/auth/sandbox config separately; harness owns hook wiring only.
+//
+// File layout under `harness.generated/codex/`:
+//   - config.toml: the harness-managed hook stanzas + a banner header
+//                  explaining the merge-into-codex contract.
+//
+// Stable-output rules (load-bearing for byte-equivalent regeneration on
+// a no-op apply):
+//   - Hook entries sorted by event then by command.
+//   - No timestamps, hostnames, or other run-specific data.
+//
+// What we deliberately do NOT do:
+//   - Try to merge into an existing `~/.codex/config.toml`. The
+//     operator owns that file; harness apply writes its own copy under
+//     harness.generated/codex/ and the operator decides how to compose.
+//     `harness apply --target <path>` with --runtime codex is rejected
+//     (see apply.ts).
+//   - Map Claude Code's permission-block to Codex's sandbox profile.
+//     Codex permission shaping is Phase 6 #6 follow-up scope; for v1
+//     the hooks alone are the enforcement.
+const HEADER = [
+    "# Generated by harness apply --runtime codex.",
+    "# DO NOT EDIT: re-run `harness apply --runtime codex` to regenerate.",
+    "#",
+    "# Merge into your ~/.codex/config.toml: copy the [[hooks.*]] entries below",
+    "# under your existing config, or include this file from your config via",
+    "# Codex's config-merge mechanism. Operator-owned settings (model, auth,",
+    "# sandbox profile) stay in your own config; harness owns hook wiring only.",
+    "#",
+    "# Wire format the harness adapter scripts expect on stdin (per",
+    '# docs/policy-packs/understanding-before-execution.md "Adapter notes /',
+    '# Codex"):',
+    "#",
+    "#   { session_id?: string, tool_name?: string, raw_input?: any, event?: string }",
+    "#",
+    "# PreToolUse blocker exit-code contract: 0 = allow, 2 = block (with reason",
+    "# on stderr). UserPromptSubmit injector emits the instruction template on",
+    "# stdout for Codex to prepend to additional_instructions.",
+    "",
+].join("\n");
+// Control-character regex covering U+0000..U+001F + U+007F. Constructed
+// programmatically so the source file stays free of literal control
+// bytes (which other tooling tends to mangle on edit).
+const CONTROL_CHAR_RE = new RegExp(`[\\u0000-\\u001f\\u007f]`, "g");
+function escapeTomlString(s) {
+    // Basic-string escapes per TOML 1.0: backslash and double-quote,
+    // plus every control char in U+0000..U+001F + U+007F. Tab/CR/LF
+    // and BS/FF use shorthand escapes; the rest fall back to \uXXXX.
+    // Hook fields are free-form `z.string().min(1)` and may carry a
+    // stray newline (multi-line description) or a regex backreference
+    // we cannot trust at face value; defence-in-depth is cheaper than
+    // a parse error downstream.
+    let out = s.replace(/\\/g, "\\\\").replace(/"/g, '\\"');
+    out = out.replace(CONTROL_CHAR_RE, (ch) => {
+        switch (ch) {
+            case "\n":
+                return "\\n";
+            case "\r":
+                return "\\r";
+            case "\t":
+                return "\\t";
+            case "\b":
+                return "\\b";
+            case "\f":
+                return "\\f";
+            default:
+                return `\\u${ch.charCodeAt(0).toString(16).padStart(4, "0")}`;
+        }
+    });
+    return out;
+}
+function tomlString(s) {
+    return `"${escapeTomlString(s)}"`;
+}
+function eventKey(event) {
+    // Codex hook keys conventionally use snake_case. Map Claude-Code's
+    // CamelCase event names so the emitted TOML reads naturally to a
+    // Codex operator. Unknown events pass through unchanged so a future
+    // event the schema accepts but this generator hasn't learned about
+    // is not silently dropped.
+    switch (event) {
+        case "UserPromptSubmit":
+            return "user_prompt_submit";
+        case "PreToolUse":
+            return "pre_tool_use";
+        case "Stop":
+            return "stop";
+        default:
+            return event;
+    }
+}
+function emitHook(h) {
+    const lines = [];
+    lines.push(`[[hooks.${eventKey(h.event)}]]`);
+    lines.push(`name = ${tomlString(h.name)}`);
+    lines.push(`command = ${tomlString(h.command)}`);
+    if (h.match !== undefined) {
+        lines.push(`match = ${tomlString(h.match)}`);
+    }
+    lines.push(`timeout_ms = ${h.budget_ms}`);
+    if (h.blocking === "hard") {
+        lines.push("blocking = true");
+    }
+    else if (h.blocking === "soft") {
+        lines.push("blocking = false  # soft");
+    }
+    else {
+        lines.push("blocking = false");
+    }
+    if (h.description !== undefined && h.description.length > 0) {
+        lines.push(`description = ${tomlString(h.description)}`);
+    }
+    return lines.join("\n");
+}
+export function generateCodexConfig(manifest) {
+    const warnings = [];
+    const hooks = [...manifest.hooks].sort((a, b) => {
+        if (a.event !== b.event)
+            return a.event < b.event ? -1 : 1;
+        return a.command < b.command ? -1 : a.command > b.command ? 1 : 0;
+    });
+    // Surface a warning for hook entries that carry path_match / bash_match
+    // filters; we do not project those into the emitted TOML (the harness
+    // schema treats them as documentation that the underlying script
+    // enforces internally, identical to the Claude Code projection in
+    // generate-settings.ts). The warning makes the silent-drop visible
+    // to operators who might expect TOML-level filtering.
+    for (const h of hooks) {
+        if (h.path_match !== undefined) {
+            warnings.push(`hook ${JSON.stringify(h.name)}: path_match is not projected into Codex config (script-side filter only)`);
+        }
+        if (h.bash_match !== undefined) {
+            warnings.push(`hook ${JSON.stringify(h.name)}: bash_match is not projected into Codex config (script-side filter only)`);
+        }
+    }
+    if (hooks.length === 0) {
+        warnings.push("manifest contributes no hooks; the emitted Codex config has no [[hooks.*]] entries");
+    }
+    const body = hooks.map(emitHook).join("\n\n");
+    const content = `${HEADER}${body}${body.length > 0 ? "\n" : ""}`;
+    return { content, warnings };
+}
+//# sourceMappingURL=generate-codex-config.js.map

package/dist/cli/apply/generate-codex-config.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate-codex-config.js","sourceRoot":"","sources":["../../../src/cli/apply/generate-codex-config.ts"],"names":[],"mappings":"AAAA,gDAAgD;AAChD,EAAE;AACF,yDAAyD;AACzD,yEAAyE;AACzE,mEAAmE;AACnE,qEAAqE;AACrE,uEAAuE;AACvE,EAAE;AACF,gDAAgD;AAChD,sEAAsE;AACtE,6DAA6D;AAC7D,EAAE;AACF,wEAAwE;AACxE,kBAAkB;AAClB,oDAAoD;AACpD,4DAA4D;AAC5D,EAAE;AACF,kCAAkC;AAClC,gEAAgE;AAChE,uEAAuE;AACvE,wEAAwE;AACxE,uEAAuE;AACvE,sBAAsB;AACtB,qEAAqE;AACrE,qEAAqE;AACrE,2CAA2C;AAS3C,MAAM,MAAM,GAAG;IACb,+CAA+C;IAC/C,sEAAsE;IACtE,GAAG;IACH,4EAA4E;IAC5E,yEAAyE;IACzE,yEAAyE;IACzE,4EAA4E;IAC5E,GAAG;IACH,gEAAgE;IAChE,wEAAwE;IACxE,YAAY;IACZ,GAAG;IACH,kFAAkF;IAClF,GAAG;IACH,4EAA4E;IAC5E,2EAA2E;IAC3E,2DAA2D;IAC3D,EAAE;CACH,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAEb,wEAAwE;AACxE,oEAAoE;AACpE,uDAAuD;AACvD,MAAM,eAAe,GAAG,IAAI,MAAM,CAAC,0BAA0B,EAAE,GAAG,CAAC,CAAC;AAEpE,SAAS,gBAAgB,CAAC,CAAS;IACjC,iEAAiE;IACjE,gEAAgE;IAChE,iEAAiE;IACjE,gEAAgE;IAChE,kEAAkE;IAClE,kEAAkE;IAClE,4BAA4B;IAC5B,IAAI,GAAG,GAAG,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;IACxD,GAAG,GAAG,GAAG,CAAC,OAAO,CAAC,eAAe,EAAE,CAAC,EAAE,EAAE,EAAE;QACxC,QAAQ,EAAE,EAAE,CAAC;YACX,KAAK,IAAI;gBACP,OAAO,KAAK,CAAC;YACf,KAAK,IAAI;gBACP,OAAO,KAAK,CAAC;YACf,KAAK,IAAI;gBACP,OAAO,KAAK,CAAC;YACf,KAAK,IAAI;gBACP,OAAO,KAAK,CAAC;YACf,KAAK,IAAI;gBACP,OAAO,KAAK,CAAC;YACf;gBACE,OAAO,MAAM,EAAE,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC;QAClE,CAAC;IACH,CAAC,CAAC,CAAC;IACH,OAAO,GAAG,CAAC;AACb,CAAC;AAED,SAAS,UAAU,CAAC,CAAS;IAC3B,OAAO,IAAI,gBAAgB,CAAC,CAAC,CAAC,GAAG,CAAC;AACpC,CAAC;AAED,SAAS,QAAQ,CAAC,KAAa;IAC7B,mEAAmE;IACnE,iEAAiE;IACjE,oEAAoE;IACpE,mEAAmE;IACnE,2BAA2B;IAC3B,QAAQ,KAAK,EAAE,CAAC;QACd,KAAK,kBAAkB;YACrB,OAAO,oBAAoB,CAAC;QAC9B,KAAK,YAAY;YACf,OAAO,cAAc,CAAC;QACxB,KAAK,MAAM;YACT,OAAO,MAAM,CAAC;QAChB;YACE,OAAO,KAAK,CAAC;IACjB,CAAC;AACH,CAAC;AAED,SAAS,QAAQ,CAAC,CAAO;IACvB,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,CAAC,IAAI,CAAC,WAAW,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC7C,KAAK,CAAC,IAAI,CAAC,UAAU,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAC3C,KAAK,CAAC,IAAI,CAAC,aAAa,UAAU,CAAC,CAAC,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;IACjD,IAAI,CAAC,CAAC,KAAK,KAAK,SAAS,EAAE,CAAC;QAC1B,KAAK,CAAC,IAAI,CAAC,WAAW,UAAU,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IAC/C,CAAC;IACD,KAAK,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC;IAC1C,IAAI,CAAC,CAAC,QAAQ,KAAK,MAAM,EAAE,CAAC;QAC1B,KAAK,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC;IAChC,CAAC;SAAM,IAAI,CAAC,CAAC,QAAQ,KAAK,MAAM,EAAE,CAAC;QACjC,KAAK,CAAC,IAAI,CAAC,0BAA0B,CAAC,CAAC;IACzC,CAAC;SAAM,CAAC;QACN,KAAK,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC;IACjC,CAAC;IACD,IAAI,CAAC,CAAC,WAAW,KAAK,SAAS,IAAI,CAAC,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC5D,KAAK,CAAC,IAAI,CAAC,iBAAiB,UAAU,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC;IAC3D,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED,MAAM,UAAU,mBAAmB,CAAC,QAAkB;IACpD,MAAM,QAAQ,GAAa,EAAE,CAAC;IAC9B,MAAM,KAAK,GAAG,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;QAC9C,IAAI,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,KAAK;YAAE,OAAO,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAC3D,OAAO,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACpE,CAAC,CAAC,CAAC;IACH,wEAAwE;IACxE,sEAAsE;IACtE,iEAAiE;IACjE,kEAAkE;IAClE,mEAAmE;IACnE,sDAAsD;IACtD,KAAK,MAAM,CAAC,IAAI,KAAK,EAAE,CAAC;QACtB,IAAI,CAAC,CAAC,UAAU,KAAK,SAAS,EAAE,CAAC;YAC/B,QAAQ,CAAC,IAAI,CACX,QAAQ,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,2EAA2E,CAC1G,CAAC;QACJ,CAAC;QACD,IAAI,CAAC,CAAC,UAAU,KAAK,SAAS,EAAE,CAAC;YAC/B,QAAQ,CAAC,IAAI,CACX,QAAQ,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,2EAA2E,CAC1G,CAAC;QACJ,CAAC;IACH,CAAC;IACD,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACvB,QAAQ,CAAC,IAAI,CACX,oFAAoF,CACrF,CAAC;IACJ,CAAC;IACD,MAAM,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAC9C,MAAM,OAAO,GAAG,GAAG,MAAM,GAAG,IAAI,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC;IACjE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,CAAC;AAC/B,CAAC"}

package/dist/cli/apply/generate-settings.d.ts

@@ -14,14 +14,28 @@ export interface SettingsMcpServer {
     args?: string[];
     env?: Record<string, string>;
 }
+export interface SettingsPermissions {
+    allow?: string[];
+    ask?: string[];
+    deny?: string[];
+}
 export interface SettingsRoot {
     hooks: Record<string, SettingsHookGroup[]>;
     mcpServers?: Record<string, SettingsMcpServer>;
+    permissions?: SettingsPermissions;
 }
 export interface GenerateSettingsResult {
     root: SettingsRoot;
     warnings: string[];
 }
+export interface GenerateSettingsExtras {
+    /**
+     * Phase 6 #5 — pack-contributed permissions emitted into the
+     * settings.json `permissions` block. Empty buckets are dropped from
+     * the output so a no-op contribution doesn't pollute the JSON.
+     */
+    packPermissions?: SettingsPermissions;
+}
 export declare function generateSettings(manifest: Manifest): SettingsRoot;
-export declare function generateSettingsWithWarnings(manifest: Manifest): GenerateSettingsResult;
+export declare function generateSettingsWithWarnings(manifest: Manifest, extras?: GenerateSettingsExtras): GenerateSettingsResult;
 export declare function buildMcpServers(entries: McpServer[], warnings: string[]): Record<string, SettingsMcpServer>;

package/dist/cli/apply/generate-settings.js

@@ -47,7 +47,7 @@ export const DEFAULT_BUDGET_MS = 30_000;
 export function generateSettings(manifest) {
     return generateSettingsWithWarnings(manifest).root;
 }
-export function generateSettingsWithWarnings(manifest) {
+export function generateSettingsWithWarnings(manifest, extras = {}) {
     const warnings = [];
     const byEvent = new Map();
     for (const h of manifest.hooks) {
@@ -64,8 +64,23 @@ export function generateSettingsWithWarnings(manifest) {
     const mcp = buildMcpServers(manifest.tools.mcp, warnings);
     if (Object.keys(mcp).length > 0)
         out.mcpServers = mcp;
+    const permissions = compactPermissions(extras.packPermissions);
+    if (permissions)
+        out.permissions = permissions;
     return { root: out, warnings };
 }
+function compactPermissions(p) {
+    if (!p)
+        return null;
+    const out = {};
+    if (p.allow && p.allow.length > 0)
+        out.allow = [...p.allow].sort();
+    if (p.ask && p.ask.length > 0)
+        out.ask = [...p.ask].sort();
+    if (p.deny && p.deny.length > 0)
+        out.deny = [...p.deny].sort();
+    return Object.keys(out).length > 0 ? out : null;
+}
 // Translate manifest `tools.mcp[]` into Claude Code's `mcpServers` map.
 // - `enabled: false` entries are dropped (matches ARCHITECTURE §3 and the
 //   asset-locking surface in harness-lock.ts: disabled MCPs are removed

package/dist/cli/apply/generate-settings.js.map

@@ -1 +1 @@
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package/dist/cli/apply/index.d.ts

@@ -1,2 +1,3 @@
-export { apply, DRIFT_HINT_MESSAGE, GENERATED_DIRNAME, MANIFEST_BASENAME, MEMORY_BASENAME, SETTINGS_BASENAME, type ApplyOptions, type ApplyOutcome, type ApplyResult, type FileApplyOutcome, } from "./apply.js";
+export { apply, CODEX_CONFIG_BASENAME, DRIFT_HINT_MESSAGE, GENERATED_DIRNAME, MANIFEST_BASENAME, MEMORY_BASENAME, SETTINGS_BASENAME, type ApplyOptions, type ApplyOutcome, type ApplyResult, type FileApplyOutcome, } from "./apply.js";
 export { formatNextSteps, type NextStepsContext } from "./next-steps.js";
+export { generateCodexConfig, type CodexConfigResult } from "./generate-codex-config.js";

package/dist/cli/apply/index.js

@@ -1,3 +1,4 @@
-export { apply, DRIFT_HINT_MESSAGE, GENERATED_DIRNAME, MANIFEST_BASENAME, MEMORY_BASENAME, SETTINGS_BASENAME, } from "./apply.js";
+export { apply, CODEX_CONFIG_BASENAME, DRIFT_HINT_MESSAGE, GENERATED_DIRNAME, MANIFEST_BASENAME, MEMORY_BASENAME, SETTINGS_BASENAME, } from "./apply.js";
 export { formatNextSteps } from "./next-steps.js";
+export { generateCodexConfig } from "./generate-codex-config.js";
 //# sourceMappingURL=index.js.map

package/dist/cli/apply/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/cli/apply/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,KAAK,EACL,kBAAkB,EAClB,iBAAiB,EACjB,iBAAiB,EACjB,eAAe,EACf,iBAAiB,GAKlB,MAAM,YAAY,CAAC;AACpB,OAAO,EAAE,eAAe,EAAyB,MAAM,iBAAiB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/cli/apply/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,KAAK,EACL,qBAAqB,EACrB,kBAAkB,EAClB,iBAAiB,EACjB,iBAAiB,EACjB,eAAe,EACf,iBAAiB,GAKlB,MAAM,YAAY,CAAC;AACpB,OAAO,EAAE,eAAe,EAAyB,MAAM,iBAAiB,CAAC;AACzE,OAAO,EAAE,mBAAmB,EAA0B,MAAM,4BAA4B,CAAC"}

package/dist/cli/approve/understanding.d.ts

@@ -0,0 +1,39 @@
+import type { Manifest } from "../../schema/index.js";
+import { type LoaderOptions } from "../loader.js";
+export interface ApproveUnderstandingOptions extends LoaderOptions {
+    /** Explicit session id (overrides $CLAUDE_SESSION_ID). */
+    session?: string;
+    /** Override the reports directory (test injection). */
+    reportsDir?: string;
+    /** Override "now" for deterministic tests. */
+    now?: Date;
+    /** Override the actor recorded in the persisted report. */
+    approvedBy?: string;
+    /** Inject a manifest (test). */
+    manifest?: Manifest;
+    /** Override the ledger writer (test). */
+    ledgerAdd?: (sessionId: string, content: string) => Promise<{
+        ok: true;
+    } | {
+        ok: false;
+        reason: string;
+    }>;
+}
+export interface ApproveUnderstandingResult {
+    sessionId: string;
+    ledger: {
+        ok: boolean;
+        tag: string;
+        reason?: string;
+    };
+    persistedReport: {
+        ok: true;
+        filePath: string;
+        previousStatus: string | null;
+        approvedAt: string;
+    } | {
+        ok: false;
+        reason: string;
+    };
+}
+export declare function approveUnderstanding(opts?: ApproveUnderstandingOptions): Promise<ApproveUnderstandingResult>;