@lannguyensi/harness 0.40.0 → 0.42.0

package/dist/cli/init/dependencies.js

@@ -18,6 +18,7 @@
 import { spawn } from "node:child_process";
 import { existsSync, accessSync, constants } from "node:fs";
 import * as path from "node:path";
+import { assertNoRealSpawnInTests } from "../../runtime/hermetic-spawn-guard.js";
 export const PROFILE_DEPENDENCIES = {
     solo: [
         {
@@ -267,7 +268,27 @@ export function formatDependencyTable(profile, result) {
     }
     return lines.join("\n");
 }
+/**
+ * Hermetic guard (task 54739002): asserts BEFORE touching
+ * `child_process` that we are not running under vitest without a test
+ * having injected `installSpawn`. This is the `npm i -g` install path —
+ * the largest blast radius of the guarded call sites, since an
+ * accidental real spawn here would actually install packages globally
+ * on whatever machine runs the tests. See
+ * src/runtime/hermetic-spawn-guard.ts for why and the env signal used.
+ * `installPackagesGlobally` has no try/catch around this call, so the
+ * thrown `HermeticSpawnViolationError` propagates directly to the
+ * caller — nothing here can degrade it to a warning. Local
+ * "no try/catch here" is not the actual guarantee, though: the OW guard
+ * (src/cli/init/interactive.ts) proved a local absence-of-catch argument
+ * isn't enough on its own — that violation had to survive a catch
+ * further up the call chain. The real backstop is runInteractive's outer
+ * catch (src/cli/init/interactive.ts:1297), which explicitly re-throws
+ * any `HermeticSpawnViolationError` past every intermediate handler
+ * between here and the wizard's top level.
+ */
 function realSpawn(cmd, args) {
+    assertNoRealSpawnInTests("npm i -g", "Inject a fake `installSpawn` runner in the test instead of exercising the real spawn path.");
     return new Promise((resolve) => {
         const child = spawn(cmd, args, { stdio: ["ignore", "inherit", "pipe"] });
         let stderr = "";

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@@ -1 +1 @@
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package/dist/cli/init/detect.d.ts

@@ -7,12 +7,14 @@ export interface DetectedRuntime {
     /** The runtime's primary config file path. */
     settingsPath: string;
     settingsExists: boolean;
-    /** Set when settingsExists but parsing failed. settingsExists stays true. */
-    settingsParseError?: string;
 }
 export interface DetectedMcpServer {
     name: string;
-    /** Which runtime's config file this entry was read from. v1: only claude-code. */
+    /**
+     * Which runtime this entry was read from. v1: only claude-code — read
+     * from its effective user-scope registry (~/.claude.json), not
+     * settings.json (task 83d8d03a).
+     */
     runtime: "claude-code";
     command: string;
     args: string[];
@@ -30,9 +32,24 @@ export interface DetectionResult {
     runtimes: DetectedRuntime[];
     manifest: DetectedManifest;
     mcpServers: DetectedMcpServer[];
+    /**
+     * Set when the Claude Code user-scope MCP registry (~/.claude.json /
+     * $CLAUDE_CONFIG_DIR/.claude.json) exists but could not be read safely
+     * (malformed JSON, `mcpServers` not an object). A missing registry file
+     * is NOT an error — `mcpServers` is simply `[]` in that case; this field
+     * lets a caller distinguish "genuinely not registered" from "could not
+     * tell" instead of detect() silently guessing empty (task 83d8d03a).
+     */
+    mcpRegistryParseError?: string;
 }
 export interface DetectOptions {
     /** Override `os.homedir()` for tests. */
     homeDir?: string;
+    /**
+     * Override for process.env (CLAUDE_CONFIG_DIR lookup) used to resolve
+     * the Claude Code user-scope MCP registry path. Defaults to
+     * `process.env`.
+     */
+    env?: NodeJS.ProcessEnv;
 }
 export declare function detect(opts?: DetectOptions): Promise<DetectionResult>;

package/dist/cli/init/detect.js

@@ -4,12 +4,21 @@
 // shape, never thrown. No writes, no network, no child processes.
 //
 // v1 scope (mirrors task c5287b80): Claude Code + Codex. MCP detection
-// reads Claude Code's settings.json only — Codex's TOML parser lives in
-// the v1.1 opencode-adapter task. The result is still useful for Codex
-// users: `runtimes[]` flags presence so the wizard can pre-select.
+// reads Claude Code's EFFECTIVE user-scope registration only — the
+// top-level `mcpServers` key of `~/.claude.json` /
+// `$CLAUDE_CONFIG_DIR/.claude.json`, read read-only via
+// `readTopLevelMcpServers` (io/claude-mcp.ts) (task 83d8d03a). It no
+// longer reads the `mcpServers` block in `~/.claude/settings.json`: Claude
+// Code never consumed that block at runtime (see io/claude-mcp.ts:1-9),
+// so `team`/`full` profile recognition (interactive.ts's
+// `detectionHasAgentTasks`) would otherwise key off dead state. Codex's
+// TOML parser lives in the v1.1 opencode-adapter task. The result is
+// still useful for Codex users: `runtimes[]` flags presence so the
+// wizard can pre-select.
 import * as fs from "node:fs";
 import * as os from "node:os";
 import * as path from "node:path";
+import { readTopLevelMcpServers, resolveClaudeUserRegistryPath } from "../../io/claude-mcp.js";
 import { resolveHomeDir } from "../../runtime/home-dir.js";
 import { VERSION } from "../../version.js";
 function resolveHome(opts) {
@@ -23,14 +32,6 @@ function safeStat(p) {
         return null;
     }
 }
-function safeReadFile(p) {
-    try {
-        return fs.readFileSync(p, "utf8");
-    }
-    catch {
-        return null;
-    }
-}
 function detectClaudeRuntime(home) {
     const claudeHome = path.join(home, ".claude");
     const settingsPath = path.join(claudeHome, "settings.json");
@@ -58,28 +59,24 @@ function detectCodexRuntime(home) {
         settingsExists: settingsStat?.isFile() ?? false,
     };
 }
-function parseClaudeMcpServers(runtime) {
-    if (!runtime.settingsExists)
-        return { servers: [] };
-    const raw = safeReadFile(runtime.settingsPath);
-    if (raw === null) {
-        return { servers: [], parseError: "settings.json unreadable" };
-    }
-    let parsed;
-    try {
-        parsed = JSON.parse(raw);
-    }
-    catch (err) {
-        return { servers: [], parseError: `settings.json invalid JSON: ${err.message}` };
-    }
-    const entries = parsed.mcpServers;
-    if (!entries || typeof entries !== "object")
-        return { servers: [] };
+/**
+ * Read Claude Code's EFFECTIVE user-scope MCP registration: the top-level
+ * `mcpServers` key of `~/.claude.json` / `$CLAUDE_CONFIG_DIR/.claude.json`
+ * (task 83d8d03a), via the shared read-only primitive in io/claude-mcp.ts.
+ * Never reads `~/.claude/settings.json` for this — Claude Code does not
+ * consume that file's `mcpServers` block at runtime. A missing registry
+ * file is not an error (empty list); malformed JSON / a non-object
+ * `mcpServers` is reported via `parseError` rather than guessed at.
+ */
+function parseClaudeMcpServers(runtime, env) {
+    const registryPath = resolveClaudeUserRegistryPath({ homeDir: runtime.home, env });
+    const { servers: rawServers, error } = readTopLevelMcpServers(registryPath);
     const servers = [];
-    for (const name of Object.keys(entries).sort()) {
-        const entry = entries[name];
-        if (!entry || typeof entry !== "object")
+    for (const name of Object.keys(rawServers).sort()) {
+        const entryRaw = rawServers[name];
+        if (typeof entryRaw !== "object" || entryRaw === null || Array.isArray(entryRaw))
             continue;
+        const entry = entryRaw;
         if (typeof entry.command !== "string" || entry.command.length === 0)
             continue;
         const args = Array.isArray(entry.args)
@@ -87,7 +84,7 @@ function parseClaudeMcpServers(runtime) {
             : [];
         servers.push({ name, runtime: "claude-code", command: entry.command, args });
     }
-    return { servers };
+    return error !== null ? { servers, parseError: error } : { servers };
 }
 function detectManifest(userHome) {
     // The harness manifest lives under the runtime-neutral harness home
@@ -111,14 +108,15 @@ export async function detect(opts = {}) {
     const claude = detectClaudeRuntime(home);
     const codex = detectCodexRuntime(home);
     const manifest = detectManifest(home);
-    const { servers, parseError } = parseClaudeMcpServers(claude);
-    if (parseError)
-        claude.settingsParseError = parseError;
-    return {
+    const { servers, parseError } = parseClaudeMcpServers(claude, opts.env ?? process.env);
+    const result = {
         harness: { version: VERSION },
         runtimes: [claude, codex],
         manifest,
         mcpServers: servers,
     };
+    if (parseError !== undefined)
+        result.mcpRegistryParseError = parseError;
+    return result;
 }
 //# sourceMappingURL=detect.js.map

package/dist/cli/init/detect.js.map

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package/dist/cli/init/index.d.ts

@@ -1,3 +1,4 @@
+import type { NpmExec } from "../doctor/npm-bin-path.js";
 import { type TemplateName } from "./templates.js";
 export interface InitOptions {
     template?: TemplateName;
@@ -17,6 +18,13 @@ export interface InitOptions {
     force?: boolean;
     configPath?: string;
     homeDir?: string;
+    /**
+     * Test-injection knobs for the post-write bin-resolution check (task
+     * 7f8fb4bc). Production leaves both undefined and gets the real PATH /
+     * `npm prefix -g` spawn.
+     */
+    pathEnv?: string;
+    npmBinExec?: NpmExec;
 }
 export interface InitResult {
     path: string;
@@ -28,6 +36,16 @@ export interface InitResult {
     overwrote: boolean;
     stdout: string;
     stderr: string;
+    /**
+     * Count of declared, enabled MCP binaries and REQUIRED CLI binaries
+     * that do not resolve on PATH right after the write (task 7f8fb4bc).
+     * Non-interactive `init` deliberately does not throw on this — a bare
+     * `harness init --template full` is expected to be followed by a
+     * separate dependency install before `harness apply` / `harness
+     * doctor`, unlike the interactive wizard which already offers to
+     * install deps first. 0 when every binary resolves (or none declared).
+     */
+    binResolutionErrorCount: number;
 }
 export declare function init(opts?: InitOptions): Promise<InitResult>;
 export declare const KNOWN_TEMPLATES: TemplateName[];

package/dist/cli/init/index.js

@@ -6,6 +6,8 @@ import { withFileLock } from "../../io/lock.js";
 import { formatValidationErrors, validateBeforeWrite, } from "../../io/validate-before-write.js";
 import { parse as parseYaml } from "yaml";
 import { EX_FAIL, EX_SOFTWARE, HarnessExitError } from "../exit-codes.js";
+import { parseManifest } from "../../schema/index.js";
+import { checkBinResolution, formatBinResolutionIssues } from "../doctor/index.js";
 import { getTemplate } from "./templates.js";
 const DEFAULT_BASENAME = "harness.yaml";
 const LOCK_BASENAME = ".harness.lock";
@@ -48,7 +50,24 @@ export async function init(opts = {}) {
         }
         atomicWriteFile(target, content);
     });
-    const stderr = exists ? `(overwriting existing manifest at ${target})\n` : "";
+    // Bin-resolution check (task 7f8fb4bc): validateBeforeWrite only checked
+    // the manifest's shape, not whether the binaries it declares actually
+    // resolve. Re-parsing here is cheap (validateBeforeWrite already proved
+    // it parses clean) and lets a fresh `harness init` surface an
+    // unresolvable MCP/CLI binary immediately — including the PATH-shadow
+    // case (installed, but under a dir not on PATH) that used to only show
+    // up later as an opaque `harness doctor` crash.
+    const manifest = parseManifest(parseYaml(content));
+    const binReport = await checkBinResolution(manifest, {
+        ...(opts.pathEnv !== undefined ? { pathEnv: opts.pathEnv } : {}),
+        ...(opts.npmBinExec !== undefined ? { npmBinExec: opts.npmBinExec } : {}),
+    });
+    let stderr = exists ? `(overwriting existing manifest at ${target})\n` : "";
+    if (binReport.errorCount > 0) {
+        stderr += `${formatBinResolutionIssues(binReport).join("\n")}\n`;
+        stderr +=
+            "\nSome declared binaries are not resolvable; install them or fix PATH, then re-run `harness doctor`.\n";
+    }
     const stdout = [
         `harness manifest written to ${target} (template: ${templateLabel})`,
         "",
@@ -58,7 +77,14 @@ export async function init(opts = {}) {
         `  harness doctor   --config ${target}`,
         "",
     ].join("\n");
-    return { path: target, template: templateLabel, overwrote: exists, stdout, stderr };
+    return {
+        path: target,
+        template: templateLabel,
+        overwrote: exists,
+        stdout,
+        stderr,
+        binResolutionErrorCount: binReport.errorCount,
+    };
 }
 export const KNOWN_TEMPLATES = ["minimal", "solo", "team", "full"];
 export function isTemplate(s) {

package/dist/cli/init/index.js.map

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package/dist/cli/init/interactive.d.ts

@@ -1,7 +1,9 @@
 import { select, confirm, input, checkbox } from "@inquirer/prompts";
 import { type RuntimeName } from "./detect.js";
 import { type InitResult } from "./index.js";
+import type { NpmExec } from "../doctor/npm-bin-path.js";
 import { type ApplyResult } from "../apply/index.js";
+import { type ClaudeMcpExec, type EnsureMcpServersResult } from "../../io/claude-mcp.js";
 import { type InstallOptions } from "./dependencies.js";
 import { type LoginSpawn, type ProbeSpawn } from "./agent-tasks-auth.js";
 export type ProfileChoice = "solo" | "team" | "full" | "custom";
@@ -25,6 +27,20 @@ export interface RuntimeApplyOutcome {
     apply?: ApplyResult;
     /** Operator-facing recovery message when apply threw, or the manual merge command for codex. */
     recoveryHint?: string;
+    /**
+     * claude-code only (task init-mcp-wiring-claude-code/T-002): the result
+     * of reconciling the manifest's `tools.mcp[]` servers against the live
+     * `claude mcp` user-scope registry. Present whenever the wizard reached
+     * the Ensure step for claude-code, regardless of outcome.
+     */
+    mcpEnsure?: EnsureMcpServersResult;
+    /**
+     * claude-code only: names stripped from the dead settings.json
+     * `mcpServers` block, when the post-Ensure migration ran and changed
+     * something. Absent when migration didn't run (Ensure incomplete) or
+     * ran as a no-op.
+     */
+    mcpMigrationRemovedNames?: string[];
 }
 export interface RunInteractiveOptions {
     /** Override homedir for detection + write target. */
@@ -49,6 +65,14 @@ export interface RunInteractiveOptions {
     authProbeSpawn?: ProbeSpawn;
     /** Override the agent-tasks-mcp-bridge `login` runner (tests). */
     authLoginSpawn?: LoginSpawn;
+    /**
+     * Override the `claude mcp` CLI exec (task init-mcp-wiring-claude-code/
+     * T-002). Tests inject a fake to drive the Ensure step (registering
+     * `tools.mcp[]` servers via `claude mcp add-json --scope user`) without
+     * a real `claude` binary on PATH. Production leaves this undefined and
+     * gets the real CLI spawn (see `io/claude-mcp.ts`).
+     */
+    mcpExec?: ClaudeMcpExec;
     /**
      * Repo directory the orchestrator-workflow co-install offer scaffolds
      * into when the operator accepts. Defaults to `process.cwd()` — the repo
@@ -62,6 +86,15 @@ export interface RunInteractiveOptions {
      * can fake success / non-zero exit / throw without touching the network.
      */
     owInitSpawn?: InstallOptions["spawn"];
+    /**
+     * Override the `npm prefix -g` runner used by `init()`'s post-write
+     * bin-resolution check (task 325ace29). Mirrors `dependencyPathEnv`:
+     * the wizard owns no npm spawn of its own, it just forwards this to
+     * `init()`, which already accepts it as `InitOptions.npmBinExec`.
+     * Production leaves it undefined and gets the real spawn; tests MUST
+     * inject a fake, or the hermetic-spawn guard on `realNpmExec` throws.
+     */
+    npmBinExec?: NpmExec;
 }
 export interface InteractiveResult {
     /** True if the operator (or a Ctrl-C / decline) bailed out. No write happened. */
@@ -72,6 +105,14 @@ export interface InteractiveResult {
     profile?: ProfileChoice;
     /** Whether `harness validate` reported zero errors after the write. */
     validateClean?: boolean;
+    /**
+     * Whether every declared, enabled MCP binary and every REQUIRED CLI
+     * binary resolves on PATH (task 7f8fb4bc). `undefined` when this check
+     * did not run (validate itself failed first). False does not abort the
+     * wizard — the operator may still want to wire runtimes and fix PATH
+     * afterward — but the CLI layer surfaces it as a loud, non-zero exit.
+     */
+    binResolutionClean?: boolean;
     /**
      * Per-runtime apply outcome from the wire-now step. Present when the
      * operator selected at least one runtime in the multiselect (default: