@lamentis/naome 1.3.3 → 1.3.5

package/installer/context.js

@@ -34,16 +34,6 @@ export function createInstallerContext() {
     installPlan: null,
     machineOwnedPaths: [],
     projectOwnedPaths: [],
-    optionalCodexHookPaths: [
-      ".codex/config.toml",
-      ".codex/hooks.json",
-      ".naome/bin/codex-hook.js",
-      ".naome/bin/codex-hook-io.js",
-      ".naome/bin/codex-hook-policy.js",
-      ".naome/bin/codex-hook-runtime.js",
-      "docs/naome/codex-hooks.md",
-    ],
-    codexHooksEnabled: false,
     localOnlyMachineOwnedPaths: [],
     localOnlyGitIgnoreEntries: [],
     localOnlyGitExcludeEntries: [],

package/installer/filesystem.js

@@ -30,10 +30,6 @@ export function copyTemplateFile(ctx, sourcePath) {
   const relativePath = relative(ctx.templateRoot, sourcePath);
   const targetPath = join(ctx.targetRoot, relativePath);
 
-  if (ctx.optionalCodexHookPaths.includes(relativePath) && !ctx.codexHooksEnabled) {
-    return;
-  }
-
   if (hasSymlinkInTargetPath(ctx, relativePath)) {
     ctx.skipped.push(relativePath);
     ctx.unsafeSkipped.push(relativePath);

package/installer/flows.js

@@ -14,14 +14,23 @@ import {
   refreshManifestHealthMetadata,
 } from "./manifest-state.js";
 import { installNativeDecisionBinary, patchInstalledMachineOwnedIntegrity } from "./native.js";
+import { removeLegacyHarnessFile } from "./harness-file-ops.js";
 import { printError } from "./output.js";
 import { compareVersions } from "./version.js";
 import { confirmAgentsTakeover, takeoverExistingAgents } from "./agents.js";
-import { ensureCodexHooks, resolveCodexHooksPreference } from "./codex-hooks.js";
+
+const legacyCodexHookPaths = [
+  ".codex/config.toml",
+  ".codex/hooks.json",
+  ".naome/bin/codex-hook-io.js",
+  ".naome/bin/codex-hook-policy.js",
+  ".naome/bin/codex-hook-runtime.js",
+  ".naome/bin/codex-hook.js",
+  "docs/naome/codex-hooks.md",
+];
 
 export async function runFreshInstall(ctx) {
   await confirmAgentsTakeover(ctx);
-  await resolveCodexHooksPreference(ctx);
 
   for (const sourcePath of walk(ctx.templateRoot)) {
     copyTemplateFile(ctx, sourcePath);
@@ -72,17 +81,22 @@ function rejectUnsupportedHistoricalInstall(ctx, version) {
 
 async function runRepair(ctx, version, options = {}) {
   ctx.summaryTitle = "NAOME harness checked";
-  await resolveCodexHooksPreference(ctx);
   ensureCoreHarnessFiles(ctx, `repair-${version}`);
   ensureTaskControlHarnessFiles(ctx, `repair-${version}`);
   ensureHarnessHealthFiles(ctx, `repair-${version}`);
-  ensureCodexHooks(ctx, `repair-${version}`);
   installNativeDecisionBinary(ctx);
   patchInstalledMachineOwnedIntegrity(ctx);
   ensureBuiltInVerificationChecks(ctx);
   ensureTestingProofHarnessSections(ctx);
   ensureRepositoryStructurePolicyFiles(ctx);
+  removeLegacyCodexHookFiles(ctx, `repair-${version}`);
   refreshManifestHealthMetadata(ctx);
   ensureCompleteUpgradeState(ctx, options.fromVersion ?? null);
   ensureLocalOnlySourceControlBoundary(ctx);
 }
+
+function removeLegacyCodexHookFiles(ctx, archiveDirName) {
+  for (const relativePath of legacyCodexHookPaths) {
+    removeLegacyHarnessFile(ctx, relativePath, archiveDirName);
+  }
+}

package/installer/harness-file-ops.js

@@ -39,6 +39,10 @@ export function ensureTemplateFile(ctx, relativePath) {
 }
 
 export function removeBranchControlledHookShim(ctx, relativePath, archiveDirName) {
+  removeLegacyHarnessFile(ctx, relativePath, archiveDirName);
+}
+
+export function removeLegacyHarnessFile(ctx, relativePath, archiveDirName) {
   const targetPath = join(ctx.targetRoot, relativePath);
   if (!existsSync(targetPath)) {
     ctx.skipped.push(relativePath);

package/installer/install-plan.js

@@ -34,9 +34,6 @@ function parseInstallPlan(ctx, output) {
     assertInstallPlanArray(ctx, installPlan, "machineOwned");
     assertInstallPlanArray(ctx, installPlan, "projectOwned");
     assertInstallPlanArray(ctx, installPlan, "localOnlyMachineOwned");
-    if (installPlan.optionalCodexHookPaths !== undefined) {
-      assertInstallPlanArray(ctx, installPlan, "optionalCodexHookPaths");
-    }
     assertInstallPlanArray(ctx, installPlan, "gitignoreEntries");
     assertInstallPlanArray(ctx, installPlan, "gitExcludeEntries");
     assertInstallPlanArray(ctx, installPlan, "gitUntrackPaths");
@@ -63,7 +60,6 @@ function assignInstallPlan(ctx, installPlan) {
   ctx.machineOwnedPaths = installPlan.machineOwned;
   ctx.projectOwnedPaths = installPlan.projectOwned;
   ctx.localOnlyMachineOwnedPaths = installPlan.localOnlyMachineOwned;
-  ctx.optionalCodexHookPaths = installPlan.optionalCodexHookPaths ?? ctx.optionalCodexHookPaths;
   ctx.localOnlyGitIgnoreEntries = installPlan.gitignoreEntries;
   ctx.localOnlyGitExcludeEntries = installPlan.gitExcludeEntries;
   ctx.localOnlyGitUntrackPaths = installPlan.gitUntrackPaths;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@lamentis/naome",
-  "version": "1.3.3",
+  "version": "1.3.5",
   "description": "Native-first CLI for the NAOME agent harness.",
   "license": "Apache-2.0",
   "type": "module",

package/templates/naome-root/.naome/bin/check-harness-health.js

@@ -11,16 +11,16 @@ const nativeBinaryName = process.platform === "win32" ? "naome.exe" : "naome";
 const expectedMachineOwnedIntegrity = Object.freeze({
   ".naome/bin/check-harness-health.js": "sha256:dc4de52b79c69600b9ba47b924e2c2b8de61a2cbfab6d1ccc0f1924d963db657",
   ".naome/bin/check-task-state.js": "sha256:df54489a22b426180266e5e0fb5f9ec381477419f688435248afbf2b9b38ea81",
-  ".naome/bin/naome.js": "sha256:d343f367da21bf45272331eec2ea34862a0bf056978780c62d6cae02e0f7993a",
+  ".naome/bin/naome.js": "sha256:a34c2e50a68d15ff2722a57590ccddc504e025d3c98ea62fd700d7ec1a789b9a",
   ".naome/package.json": "sha256:8005a3491db7d92f36ac66369861589f9c47123d3a7c71e643fc2c06168cd45a",
   ".naome/task-contract.schema.json": "sha256:1b3b62350328d0d6d660e36d1d1baaa2b88718530db774f9ab2a9e2fcba369c8",
   "AGENTS.md": "sha256:e8b2fc786c1c72b69ba8f2b2ffce4f459e799c7453ce9ff4a9f6448a8f9e6b4f",
-  "docs/naome/agent-workflow.md": "sha256:78faeb4eed157b60f0b60bc43da36c713fc4a3436b93bd963ce5f3c12dc91f22",
+  "docs/naome/agent-workflow.md": "sha256:2fd1fd02eb6849133b9e8227421914580b1c469a60388a063c1b6ed48016b48d",
   "docs/naome/context-economy.md": "sha256:3ed5075815ecf4ada46a5e65438769310307c35759fcd46b13dc0b96e02bebd9",
   "docs/naome/execution.md": "sha256:bfc5d55838942ec8e3d790b59e3c634ff5bf6a2298265cef3dca9788a097eafb",
   "docs/naome/first-run.md": "sha256:1466ce8c65e19a1514885f917db14e8a772350e3f6d1c03a66326963365919e1",
   "docs/naome/index.md": "sha256:07ef776f49130319a5280bdb3ae38af22141708253f38eb983a4336fbae1b25a",
-  "docs/naome/task-ledger.md": "sha256:1e524085a2f88811941fd9f2f48ca826bc3e0e4816039d07e795637847714cbd",
+  "docs/naome/task-ledger.md": "sha256:ac637a31abdd13eee15a49086594e63f5c88fe12a5cf621b227310788ae7e583",
   "docs/naome/upgrade.md": "sha256:2c60f0441bbd98bd528d109b30a7ded4b0ad55d61ffb9f52edac9e93b7999cb1"
 });
 

package/templates/naome-root/.naome/bin/check-task-state.js

@@ -11,16 +11,16 @@ const nativeBinaryName = process.platform === "win32" ? "naome.exe" : "naome";
 const expectedMachineOwnedIntegrity = Object.freeze({
   ".naome/bin/check-harness-health.js": "sha256:dc4de52b79c69600b9ba47b924e2c2b8de61a2cbfab6d1ccc0f1924d963db657",
   ".naome/bin/check-task-state.js": "sha256:df54489a22b426180266e5e0fb5f9ec381477419f688435248afbf2b9b38ea81",
-  ".naome/bin/naome.js": "sha256:d343f367da21bf45272331eec2ea34862a0bf056978780c62d6cae02e0f7993a",
+  ".naome/bin/naome.js": "sha256:a34c2e50a68d15ff2722a57590ccddc504e025d3c98ea62fd700d7ec1a789b9a",
   ".naome/package.json": "sha256:8005a3491db7d92f36ac66369861589f9c47123d3a7c71e643fc2c06168cd45a",
   ".naome/task-contract.schema.json": "sha256:1b3b62350328d0d6d660e36d1d1baaa2b88718530db774f9ab2a9e2fcba369c8",
   "AGENTS.md": "sha256:e8b2fc786c1c72b69ba8f2b2ffce4f459e799c7453ce9ff4a9f6448a8f9e6b4f",
-  "docs/naome/agent-workflow.md": "sha256:78faeb4eed157b60f0b60bc43da36c713fc4a3436b93bd963ce5f3c12dc91f22",
+  "docs/naome/agent-workflow.md": "sha256:2fd1fd02eb6849133b9e8227421914580b1c469a60388a063c1b6ed48016b48d",
   "docs/naome/context-economy.md": "sha256:3ed5075815ecf4ada46a5e65438769310307c35759fcd46b13dc0b96e02bebd9",
   "docs/naome/execution.md": "sha256:bfc5d55838942ec8e3d790b59e3c634ff5bf6a2298265cef3dca9788a097eafb",
   "docs/naome/first-run.md": "sha256:1466ce8c65e19a1514885f917db14e8a772350e3f6d1c03a66326963365919e1",
   "docs/naome/index.md": "sha256:07ef776f49130319a5280bdb3ae38af22141708253f38eb983a4336fbae1b25a",
-  "docs/naome/task-ledger.md": "sha256:1e524085a2f88811941fd9f2f48ca826bc3e0e4816039d07e795637847714cbd",
+  "docs/naome/task-ledger.md": "sha256:ac637a31abdd13eee15a49086594e63f5c88fe12a5cf621b227310788ae7e583",
   "docs/naome/upgrade.md": "sha256:2c60f0441bbd98bd528d109b30a7ded4b0ad55d61ffb9f52edac9e93b7999cb1"
 });
 

package/templates/naome-root/.naome/bin/naome.js

@@ -12,7 +12,7 @@ const expectedNativeBinaryIntegrity = "sha256:generated";
 function main(argv) {
   const [command, ...args] = argv;
 
-  if (isHelpRequest(argv)) {
+  if (["help", "--help", "-h"].includes(argv[0]) || ["help", "--help", "-h"].includes(argv[1])) {
     printHelp();
     process.exit(0);
   }
@@ -36,10 +36,6 @@ function main(argv) {
   process.exit(command ? 1 : 0);
 }
 
-function isHelpRequest(args) {
-  return ["help", "--help", "-h"].includes(args[0]) || ["help", "--help", "-h"].includes(args[1]);
-}
-
 function runNativeDecisionCommand(command, args) {
   const root = findHarnessRoot(process.cwd());
   if (!root) {
@@ -173,7 +169,22 @@ function commitBaseline(root, message, options = {}) {
   }
 
   const before = gitHead(root);
-  runGitOrExit(root, ["add", "-A", "--", ...changedPaths]);
+  const tracked = runGit(root, ["ls-files", "-z", "--", ...changedPaths]);
+  if (tracked.status !== 0) {
+    fail(`Cannot determine tracked task paths: ${tracked.stderr.trim() || tracked.stdout.trim()}`);
+  }
+  const trackedPaths = tracked.stdout.split("\0").filter(Boolean);
+  if (trackedPaths.length > 0) {
+    runGitOrExit(root, ["add", "-u", "--", ...trackedPaths]);
+  }
+  const untracked = runGit(root, ["ls-files", "--others", "--exclude-standard", "-z", "--", ...changedPaths]);
+  if (untracked.status !== 0) {
+    fail(`Cannot determine untracked task paths: ${untracked.stderr.trim() || untracked.stdout.trim()}`);
+  }
+  const untrackedPaths = untracked.stdout.split("\0").filter(Boolean);
+  if (untrackedPaths.length > 0) {
+    runGitOrExit(root, ["add", "--", ...untrackedPaths]);
+  }
   runOrExit(root, [process.execPath, [join(root, ".naome", "bin", "check-task-state.js"), "--commit-gate"]]);
   runGitOrExit(root, ["commit", "-m", message]);
   return { before, after: gitHead(root) };
@@ -356,47 +367,7 @@ function findAncestorWithAnyMarker(startPath, markers) {
 }
 
 function printHelp() {
-  const commands = [
-    "naome status [--json]",
-    "naome next [--json]",
-    "naome intent --prompt-file <path> [--json]",
-    "naome intent --prompt <text> [--json]",
-    "naome route --prompt-file <path> [--execute] [--json]",
-    "naome route --prompt <text> [--execute] [--json]",
-    "naome explain --prompt-file <path> [--json]",
-    "naome explain --prompt <text> [--json]",
-    "naome context select --changed [--json]",
-    "naome context select --prompt-file <path> [--json]",
-    "naome context select --prompt <text> [--json]",
-    "naome doctor [--json]",
-    "naome task render-state [--write] [--json]",
-    "naome task migrate-ledger [--write] [--json]",
-    "naome quality init [--baseline|--deep-baseline] [--json]",
-    "naome quality check --changed [--include-scanned-paths] [--json]",
-    "naome quality check --path <path> [--path <path>...] [--include-scanned-paths] [--json]",
-    "naome quality report [--deep] [--include-scanned-paths] [--json]",
-    "naome quality cache status [--json]",
-    "naome quality cache clear",
-    "naome semantic report [--deep] [--json]",
-    "naome semantic check --changed [--json]",
-    "naome semantic check --path <path> [--path <path>...] [--json]",
-    "naome semantic route --finding <id> [--json]",
-    "naome semantic loop [--json]",
-    "naome repo model [--write] [--json]",
-    "naome repo check [--json]",
-    "naome repo explain --path <path> [--json]",
-    "naome structure report [--json]",
-    "naome structure explain --path <path> [--json]",
-    "naome cleanup plan [--json]",
-    "naome cleanup route --path <path> [--json]",
-    "naome refresh-integrity [--json]",
-    "naome workflow agent-plan|context-delta|proof-plan|capabilities|edit-watchdog|decision-gate|digest [--json]",
-    "naome workflow search-profile|check-search|phases|processes|mutations [--json]",
-    "naome install",
-    "naome sync",
-    "naome commit -m \"type(scope): message\"",
-    "node .naome/bin/naome.js commit -m \"type(scope): message\""
-  ];
+  const commands = "naome status [--json]|naome next [--json]|naome intent --prompt-file <path> [--json]|naome intent --prompt <text> [--json]|naome route --prompt-file <path> [--execute] [--json]|naome route --prompt <text> [--execute] [--json]|naome explain --prompt-file <path> [--json]|naome explain --prompt <text> [--json]|naome context select --changed [--json]|naome context select --prompt-file <path> [--json]|naome context select --prompt <text> [--json]|naome doctor [--json]|naome task render-state [--write] [--json]|naome task migrate-ledger [--write] [--json]|naome quality init [--baseline|--deep-baseline] [--json]|naome quality check --changed [--include-scanned-paths] [--json]|naome quality check --path <path> [--path <path>...] [--include-scanned-paths] [--json]|naome quality report [--deep] [--include-scanned-paths] [--json]|naome quality cache status [--json]|naome quality cache clear|naome semantic report [--deep] [--json]|naome semantic check --changed [--json]|naome semantic check --path <path> [--path <path>...] [--json]|naome semantic route --finding <id> [--json]|naome semantic loop [--json]|naome repo model [--write] [--json]|naome repo check [--json]|naome repo explain --path <path> [--json]|naome structure report [--json]|naome structure explain --path <path> [--json]|naome cleanup plan [--json]|naome cleanup route --path <path> [--json]|naome refresh-integrity [--json]|naome workflow agent-plan|context-delta|proof-plan|capabilities|edit-watchdog|decision-gate|digest [--json]|naome workflow search-profile|check-search|phases|processes|mutations [--json]|naome install|naome sync|naome commit -m \"type(scope): message\"|node .naome/bin/naome.js commit -m \"type(scope): message\"".split("|");
   console.log(["Usage:", ...commands.map((command) => `  ${command}`)].join("\n"));
 }
 

package/templates/naome-root/.naome/manifest.json

@@ -4,16 +4,16 @@
   "integrity": {
     ".naome/bin/check-harness-health.js": "sha256:dc4de52b79c69600b9ba47b924e2c2b8de61a2cbfab6d1ccc0f1924d963db657",
     ".naome/bin/check-task-state.js": "sha256:df54489a22b426180266e5e0fb5f9ec381477419f688435248afbf2b9b38ea81",
-    ".naome/bin/naome.js": "sha256:d343f367da21bf45272331eec2ea34862a0bf056978780c62d6cae02e0f7993a",
+    ".naome/bin/naome.js": "sha256:a34c2e50a68d15ff2722a57590ccddc504e025d3c98ea62fd700d7ec1a789b9a",
     ".naome/package.json": "sha256:8005a3491db7d92f36ac66369861589f9c47123d3a7c71e643fc2c06168cd45a",
     ".naome/task-contract.schema.json": "sha256:1b3b62350328d0d6d660e36d1d1baaa2b88718530db774f9ab2a9e2fcba369c8",
     "AGENTS.md": "sha256:e8b2fc786c1c72b69ba8f2b2ffce4f459e799c7453ce9ff4a9f6448a8f9e6b4f",
-    "docs/naome/agent-workflow.md": "sha256:78faeb4eed157b60f0b60bc43da36c713fc4a3436b93bd963ce5f3c12dc91f22",
+    "docs/naome/agent-workflow.md": "sha256:2fd1fd02eb6849133b9e8227421914580b1c469a60388a063c1b6ed48016b48d",
     "docs/naome/context-economy.md": "sha256:3ed5075815ecf4ada46a5e65438769310307c35759fcd46b13dc0b96e02bebd9",
     "docs/naome/execution.md": "sha256:bfc5d55838942ec8e3d790b59e3c634ff5bf6a2298265cef3dca9788a097eafb",
     "docs/naome/first-run.md": "sha256:1466ce8c65e19a1514885f917db14e8a772350e3f6d1c03a66326963365919e1",
     "docs/naome/index.md": "sha256:07ef776f49130319a5280bdb3ae38af22141708253f38eb983a4336fbae1b25a",
-    "docs/naome/task-ledger.md": "sha256:1e524085a2f88811941fd9f2f48ca826bc3e0e4816039d07e795637847714cbd",
+    "docs/naome/task-ledger.md": "sha256:ac637a31abdd13eee15a49086594e63f5c88fe12a5cf621b227310788ae7e583",
     "docs/naome/upgrade.md": "sha256:2c60f0441bbd98bd528d109b30a7ded4b0ad55d61ffb9f52edac9e93b7999cb1"
   },
   "machineOwned": [

package/templates/naome-root/docs/naome/agent-workflow.md

@@ -114,10 +114,13 @@ Use this workflow after first-run intake is complete.
    task-state automatically; if a legacy-only active task is still present, run
    `node .naome/bin/naome.js task migrate-ledger --write --json` before adding
    completion proof.
-5. Record proof in `.naome/tasks/<task-id>/proofs/`. If legacy compatibility
-   work is unavoidable, use compact `proofPathSets` and `proofBatches` in
-   `.naome/task-state.json` and include every changed in-scope path reported by
-   git in expanded proof evidence.
+5. Record proof as compact `proofPathSets` and `proofBatches` in
+   `.naome/tasks/<task-id>/task.json` when many checks share evidence paths.
+   Use `.naome/tasks/<task-id>/proofs/` only when separate per-check files are
+   needed for parallel writers or durable audit detail. If legacy compatibility
+   work is unavoidable, use the same compact fields in `.naome/task-state.json`
+   and include every changed in-scope path reported by git in expanded proof
+   evidence.
 6. Run `node .naome/bin/naome.js task render-state --write --json` before
    external compatibility checks. Do not hand-edit the rendered projection when
    `.naome/tasks/active.json` exists.

package/templates/naome-root/docs/naome/architecture.md

@@ -8,7 +8,16 @@ Status: Uninitialized
 
 ## Known Boundaries
 
-- Unknown.
+- NAOME information falls into durable project state, durable task ledger,
+  generated projection, local runtime state, run evidence, and product source.
+- Durable project state is committed repository or package state needed to
+  reinstall or reconstruct the harness.
+- `.naome/task-state.json` is a generated compatibility projection when
+  `.naome/tasks/active.json` exists. Render it from the ledger instead of
+  hand-editing it.
+- `.naome/tmp/` is local runtime state and must not be committed.
+- Per-check proof files are run evidence. Prefer compact ledger proof batches
+  when many release checks share the same evidence paths.
 
 ## Assumed Boundaries
 
@@ -20,7 +29,7 @@ Status: Uninitialized
 
 ## Generated Or External Code
 
-- Unknown.
+- Generated NAOME projections must be reproducible from durable state.
 
 ## Evidence
 

package/templates/naome-root/docs/naome/task-ledger.md

@@ -26,6 +26,9 @@ new deterministic task tooling can use `.naome/tasks/` as the source of truth.
 - `mutations.json` records touched paths and mutation ownership.
 - `proofs/<check-id>.json` stores one verification result per check so parallel
   checks do not rewrite the same file.
+- `task.json` may also contain compact `proofPathSets` and `proofBatches`.
+  Prefer that release shape when many checks share evidence paths and detailed
+  command logs are already retained by CI or the local run history.
 
 ## Compatibility
 
@@ -60,7 +63,7 @@ whether product changes stay inside `allowedPaths`.
 The intended long-term model is:
 
 ```text
-task spec + events + mutations + proofs + verification config
+task spec + events + mutations + compact proof batches + verification config
 => canonical task model
 => generated task-state projection
 => gates / route / commit / completion
@@ -69,3 +72,12 @@ task spec + events + mutations + proofs + verification config
 This keeps old repositories backward-compatible while making future parallel
 agents safer: separate agents and checks can write separate event/proof files
 instead of all competing for `.naome/task-state.json`.
+
+## Information Policy
+
+Use `node .naome/bin/naome.js workflow information --path <path> --json` before
+changing NAOME control files whose retention is unclear. Durable configuration,
+templates, task specs, and task events are restored from repository or package
+state. `.naome/task-state.json` is generated from durable state. `.naome/tmp/`
+is local runtime state. Per-check proof files are run evidence; compact release
+proof batches keep release diffs readable without losing verification coverage.

package/templates/naome-root/docs/naome/testing.md

@@ -17,10 +17,6 @@ touched-file feedback. This catches local size, symbol, duplicate, structure,
 and stale-policy issues before the task grows. It does not replace the final
 `repository-quality-check`; always run the changed-file gate before completion.
 
-Optional Codex hooks can provide the same kind of early feedback during an
-agent run. They are acceleration only; final proof still comes from the
-commands in this document and `.naome/verification.json`.
-
 ## Known Checks
 
 | Check id | Command | Cwd | Cost | Last verified |

package/installer/codex-hooks.js

@@ -1,121 +0,0 @@
-import { createInterface } from "node:readline/promises";
-import { stdin as input, stdout as output } from "node:process";
-import { existsSync, readFileSync } from "node:fs";
-import { join } from "node:path";
-
-import { replaceHarnessFile } from "./harness-file-ops.js";
-import { printSection } from "./output.js";
-
-const HOOK_CONFIG_PATH = ".codex/hooks.json";
-const HOOK_FEATURE_CONFIG_PATH = ".codex/config.toml";
-const HOOK_DISPATCHER_PATH = ".naome/bin/codex-hook.js";
-const HOOK_IO_PATH = ".naome/bin/codex-hook-io.js";
-const HOOK_POLICY_PATH = ".naome/bin/codex-hook-policy.js";
-const HOOK_RUNTIME_PATH = ".naome/bin/codex-hook-runtime.js";
-const HOOK_DOC_PATH = "docs/naome/codex-hooks.md";
-
-const CODEX_HOOK_MACHINE_PATHS = [
-  HOOK_FEATURE_CONFIG_PATH,
-  HOOK_CONFIG_PATH,
-  HOOK_DISPATCHER_PATH,
-  HOOK_IO_PATH,
-  HOOK_POLICY_PATH,
-  HOOK_RUNTIME_PATH,
-  HOOK_DOC_PATH,
-];
-const CODEX_HOOK_EXECUTABLE_PATHS = [HOOK_DISPATCHER_PATH];
-
-export async function resolveCodexHooksPreference(ctx) {
-  const override = parseCodexHooksOverride(process.env.NAOME_CODEX_HOOKS);
-  if (override !== null) {
-    setCodexHooksEnabled(ctx, override);
-    return;
-  }
-
-  if (hasManagedCodexHooks(ctx)) {
-    setCodexHooksEnabled(ctx, true);
-    return;
-  }
-
-  if (!process.stdin.isTTY || process.env.CI === "true") {
-    setCodexHooksEnabled(ctx, false);
-    return;
-  }
-
-  printSection(ctx, "Optional Codex Hooks");
-  console.log(`${ctx.color.dim("purpose")} earlier NAOME feedback for Codex agents`);
-  console.log(`${ctx.color.dim("scope  ")} repo-local acceleration only; normal NAOME gates remain authoritative`);
-  console.log(`${ctx.color.dim("human ")} optional; declining keeps install and sync working`);
-  console.log("");
-
-  const rl = createInterface({ input, output });
-  const answer = await rl.question(`${ctx.color.yellow("?")} Install optional Codex Hooks for this repository? (y/N) `);
-  rl.close();
-
-  setCodexHooksEnabled(ctx, answer.trim().toLowerCase() === "y");
-}
-
-export function ensureCodexHooks(ctx, archiveDirName) {
-  if (!ctx.codexHooksEnabled) {
-    return;
-  }
-
-  ensureCodexHookManifestPaths(ctx);
-  for (const relativePath of ctx.optionalCodexHookPaths) {
-    replaceHarnessFile(ctx, relativePath, archiveDirName);
-  }
-}
-
-export function ensureCodexHookManifestPaths(ctx) {
-  for (const relativePath of CODEX_HOOK_MACHINE_PATHS) {
-    appendUnique(ctx.machineOwnedPaths, relativePath);
-    appendUnique(ctx.localOnlyMachineOwnedPaths, relativePath);
-    appendUnique(ctx.localOnlyGitExcludeEntries, relativePath);
-    appendUnique(ctx.localOnlyGitUntrackPaths, relativePath);
-  }
-  for (const relativePath of CODEX_HOOK_EXECUTABLE_PATHS) {
-    ctx.executableMachineOwnedPaths.add(relativePath);
-  }
-}
-
-function setCodexHooksEnabled(ctx, enabled) {
-  ctx.codexHooksEnabled = enabled;
-  if (enabled) {
-    ensureCodexHookManifestPaths(ctx);
-  }
-}
-
-function hasManagedCodexHooks(ctx) {
-  const hookConfigPath = join(ctx.targetRoot, HOOK_CONFIG_PATH);
-  if (!existsSync(hookConfigPath)) {
-    return false;
-  }
-
-  try {
-    const hooks = JSON.parse(readFileSync(hookConfigPath, "utf8"));
-    return hooks.schema === "naome.codex-hooks.v1";
-  } catch {
-    return false;
-  }
-}
-
-function parseCodexHooksOverride(value) {
-  if (value === undefined) {
-    return null;
-  }
-
-  const normalized = value.trim().toLowerCase();
-  if (["1", "true", "yes", "y", "on"].includes(normalized)) {
-    return true;
-  }
-  if (["0", "false", "no", "n", "off"].includes(normalized)) {
-    return false;
-  }
-  return null;
-}
-
-function appendUnique(values, value) {
-  if (!values.includes(value)) {
-    values.push(value);
-  }
-}

package/templates/naome-root/.codex/config.toml

@@ -1,2 +0,0 @@
-[features]
-codex_hooks = true

package/templates/naome-root/.codex/hooks.json

@@ -1,70 +0,0 @@
-{
-  "schema": "naome.codex-hooks.v1",
-  "version": 1,
-  "hooks": {
-    "SessionStart": [
-      {
-        "matcher": "startup|resume|clear",
-        "hooks": [
-          {
-            "type": "command",
-            "command": "node .naome/bin/codex-hook.js --event SessionStart"
-          }
-        ]
-      }
-    ],
-    "UserPromptSubmit": [
-      {
-        "hooks": [
-          {
-            "type": "command",
-            "command": "node .naome/bin/codex-hook.js --event UserPromptSubmit"
-          }
-        ]
-      }
-    ],
-    "PreToolUse": [
-      {
-        "matcher": "*",
-        "hooks": [
-          {
-            "type": "command",
-            "command": "node .naome/bin/codex-hook.js --event PreToolUse"
-          }
-        ]
-      }
-    ],
-    "PermissionRequest": [
-      {
-        "matcher": "*",
-        "hooks": [
-          {
-            "type": "command",
-            "command": "node .naome/bin/codex-hook.js --event PermissionRequest"
-          }
-        ]
-      }
-    ],
-    "PostToolUse": [
-      {
-        "matcher": "*",
-        "hooks": [
-          {
-            "type": "command",
-            "command": "node .naome/bin/codex-hook.js --event PostToolUse"
-          }
-        ]
-      }
-    ],
-    "Stop": [
-      {
-        "hooks": [
-          {
-            "type": "command",
-            "command": "node .naome/bin/codex-hook.js --event Stop"
-          }
-        ]
-      }
-    ]
-  }
-}