@kybernesis/brain-storage-sqlite 0.2.0 → 0.6.0

package/dist/entity-graph.js.map

@@ -0,0 +1 @@
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package/dist/fact-retrieval-queries.d.ts

@@ -0,0 +1,12 @@
+/**
+ * FactRetrievalQueries (SQLite impl) — the 4-layer fact-retrieval candidate SQL.
+ *
+ * Business plane (gate U2 of the 0.6.0 untangle). SQL moved VERBATIM from
+ * brain-core/fact-retrieval.ts; behaviour held constant. Only candidate
+ * generation + the entity-graph BFS live here — the scoring (hop penalty,
+ * bridge/scene weights, source-priority tie-break, dedup, assembly) stays in
+ * brain-core. Each method keeps the original best-effort try/catch → [] / null.
+ */
+import type { FactRetrievalQueries } from '@kybernesis/brain-contracts';
+export declare const sqliteFactRetrievalQueries: FactRetrievalQueries;
+//# sourceMappingURL=fact-retrieval-queries.d.ts.map

package/dist/fact-retrieval-queries.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"fact-retrieval-queries.d.ts","sourceRoot":"","sources":["../src/fact-retrieval-queries.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,KAAK,EAEV,oBAAoB,EAGrB,MAAM,6BAA6B,CAAC;AAGrC,eAAO,MAAM,0BAA0B,EAAE,oBAuHxC,CAAC"}

package/dist/fact-retrieval-queries.js

@@ -0,0 +1,116 @@
+/**
+ * FactRetrievalQueries (SQLite impl) — the 4-layer fact-retrieval candidate SQL.
+ *
+ * Business plane (gate U2 of the 0.6.0 untangle). SQL moved VERBATIM from
+ * brain-core/fact-retrieval.ts; behaviour held constant. Only candidate
+ * generation + the entity-graph BFS live here — the scoring (hop penalty,
+ * bridge/scene weights, source-priority tie-break, dedup, assembly) stays in
+ * brain-core. Each method keeps the original best-effort try/catch → [] / null.
+ */
+import { getDb } from './index.js';
+export const sqliteFactRetrievalQueries = {
+    async searchFactsByFts(t, ftsQuery, limit) {
+        const db = getDb(t, 'timeline');
+        try {
+            return db.prepare(`
+        SELECT f.id, f.content, f.category, f.confidence, f.timestamp,
+               f.entities_json, f.is_latest, f.expires_at, f.source_conversation_id
+        FROM facts f
+        JOIN facts_fts fts ON f.id = fts.rowid
+        WHERE facts_fts MATCH ?
+          AND COALESCE(f.is_latest, 1) = 1
+          AND (f.expires_at IS NULL OR f.expires_at > datetime('now'))
+        ORDER BY rank
+        LIMIT ?
+      `).all(ftsQuery, limit);
+        }
+        catch (err) {
+            console.warn('[brain-storage-sqlite/fact-retrieval] FTS search failed', { err: String(err) });
+            return [];
+        }
+    },
+    async traverseEntityGraph(t, seedIds, maxHops, maxEntities) {
+        const entityDb = getDb(t, 'entityGraph');
+        const visited = new Map();
+        for (const id of seedIds)
+            visited.set(id, 0);
+        let frontier = [...seedIds];
+        for (let hop = 0; hop < maxHops && frontier.length > 0; hop++) {
+            const next = [];
+            for (const eid of frontier) {
+                try {
+                    const connected = entityDb.prepare(`
+            SELECT CASE WHEN source_id = ? THEN target_id ELSE source_id END as cid
+            FROM entity_relations
+            WHERE source_id = ? OR target_id = ?
+            ORDER BY strength DESC LIMIT 10
+          `).all(eid, eid, eid);
+                    for (const c of connected) {
+                        if (!visited.has(c.cid) && visited.size < maxEntities) {
+                            visited.set(c.cid, hop + 1);
+                            next.push(c.cid);
+                        }
+                    }
+                }
+                catch { /* skip */ }
+            }
+            frontier = next;
+        }
+        return Array.from(visited.entries()).map(([id, hopDistance]) => ({ id, hopDistance }));
+    },
+    async getFactConversationId(t, factId) {
+        const db = getDb(t, 'timeline');
+        try {
+            const row = db.prepare('SELECT source_conversation_id FROM facts WHERE id = ?').get(factId);
+            return row ? row.source_conversation_id : null;
+        }
+        catch {
+            return null; // best-effort
+        }
+    },
+    async nearbyFactsInConversation(t, conversationId, excludeFactId, limit) {
+        const db = getDb(t, 'timeline');
+        try {
+            return db.prepare(`
+        SELECT id, content, category, confidence, timestamp, entities_json, source_conversation_id
+        FROM facts
+        WHERE source_conversation_id = ? AND id != ?
+          AND COALESCE(is_latest, 1) = 1
+          AND (expires_at IS NULL OR expires_at > datetime('now'))
+        ORDER BY ABS(id - ?) ASC LIMIT ?
+      `).all(conversationId, excludeFactId, excludeFactId, limit);
+        }
+        catch {
+            return []; // best-effort
+        }
+    },
+    async listBridgeCandidates(t, limit) {
+        const db = getDb(t, 'timeline');
+        try {
+            return db.prepare(`
+        SELECT id, content, category, confidence, timestamp, entities_json
+        FROM facts
+        WHERE COALESCE(is_latest, 1) = 1
+          AND (expires_at IS NULL OR expires_at > datetime('now'))
+        LIMIT ?
+      `).all(limit);
+        }
+        catch {
+            return []; // best-effort
+        }
+    },
+    async findSupportingSegments(t, parentPath, limit) {
+        const db = getDb(t, 'timeline');
+        try {
+            return db.prepare(`
+        SELECT source_path, summary, timestamp FROM timeline_events
+        WHERE source_path LIKE ? OR source_path = ?
+        ORDER BY timestamp ASC LIMIT ?
+      `).all(`${parentPath}%`, parentPath, limit);
+        }
+        catch {
+            return []; // best-effort
+        }
+    },
+};
+//# sourceMappingURL=fact-retrieval-queries.js.map

package/dist/fact-retrieval-queries.js.map

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package/dist/fact-store.d.ts

@@ -0,0 +1,8 @@
+/**
+ * FactRepository (SQLite impl). SQL moved verbatim from brain-core/fact-store.ts
+ * during the storage-seam migration (G1) — behaviour held constant.
+ * Facts physically live in timeline.db (same file as timeline_events).
+ */
+import type { FactRepository } from '@kybernesis/brain-contracts';
+export declare const sqliteFactStore: FactRepository;
+//# sourceMappingURL=fact-store.d.ts.map

package/dist/fact-store.d.ts.map

@@ -0,0 +1 @@
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package/dist/fact-store.js

@@ -0,0 +1,222 @@
+/**
+ * FactRepository (SQLite impl). SQL moved verbatim from brain-core/fact-store.ts
+ * during the storage-seam migration (G1) — behaviour held constant.
+ * Facts physically live in timeline.db (same file as timeline_events).
+ */
+import { getDb } from './index.js';
+import { sanitizeFtsQuery } from './fts-sanitizer.js';
+function rowToFact(row) {
+    return {
+        id: row.id,
+        content: row.content,
+        source_path: row.source_path,
+        source_conversation_id: row.source_conversation_id,
+        entities: JSON.parse(row.entities_json || '[]'),
+        timestamp: row.timestamp,
+        confidence: row.confidence,
+        category: row.category,
+        created_at: row.created_at,
+        is_latest: (row.is_latest ?? 1) === 1,
+        superseded_by: row.superseded_by ?? undefined,
+        expires_at: row.expires_at ?? undefined,
+        updated_at: row.updated_at ?? undefined,
+        access_count: row.access_count ?? 0,
+        source_type: row.source_type ?? 'chat',
+        is_retracted: (row.is_retracted ?? 0) === 1,
+        retracted_by: row.retracted_by ?? undefined,
+        last_reinforced_at: row.last_reinforced_at ?? undefined,
+        project_id: row.project_id ?? undefined,
+        tags: JSON.parse(row.tags_json || '[]'),
+        classification: row.classification ?? undefined,
+        connection_id: row.connection_id ?? undefined,
+        source_did: row.source_did ?? undefined,
+    };
+}
+// Facts table is created by timeline.ts ensureSchema. This impl only ensures
+// the FTS index + triggers. Per-slug init cache (moved with the code).
+const initialized = new Set();
+function ensureFactsFts(t) {
+    if (initialized.has(t.slug))
+        return;
+    const db = getDb(t, 'timeline');
+    // Bug Fix 1 (CANONICAL.md §6): the non-contentless facts_fts table must use
+    // explicit DELETE FROM ... WHERE rowid = ? in triggers, NOT the ('delete', ...)
+    // command form which is only valid for contentless FTS5 tables.
+    db.exec(`
+    CREATE VIRTUAL TABLE IF NOT EXISTS facts_fts USING fts5(
+      content, entities,
+      tokenize = 'unicode61 remove_diacritics 2'
+    );
+
+    CREATE TRIGGER IF NOT EXISTS facts_fts_ai AFTER INSERT ON facts BEGIN
+      INSERT INTO facts_fts(rowid, content, entities) VALUES (new.id, new.content, new.entities_json);
+    END;
+
+    CREATE TRIGGER IF NOT EXISTS facts_fts_ad AFTER DELETE ON facts BEGIN
+      DELETE FROM facts_fts WHERE rowid = old.id;
+    END;
+
+    CREATE TRIGGER IF NOT EXISTS facts_fts_au AFTER UPDATE ON facts BEGIN
+      DELETE FROM facts_fts WHERE rowid = old.id;
+      INSERT INTO facts_fts(rowid, content, entities) VALUES (new.id, new.content, new.entities_json);
+    END;
+  `);
+    initialized.add(t.slug);
+}
+export const sqliteFactStore = {
+    async ensureFactsTable(t) {
+        ensureFactsFts(t);
+    },
+    async storeFact(t, fact) {
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        const result = db.prepare(`
+      INSERT OR REPLACE INTO facts
+        (content, source_path, source_conversation_id, entities_json, timestamp, confidence, category,
+         expires_at, source_type, project_id, tags_json, classification, connection_id, source_did)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+    `).run(fact.content, fact.source_path, fact.source_conversation_id, JSON.stringify(fact.entities), fact.timestamp, fact.confidence, fact.category, fact.expires_at ?? null, fact.source_type ?? 'chat', fact.project_id ?? null, JSON.stringify(fact.tags ?? []), fact.classification ?? null, fact.connection_id ?? null, fact.source_did ?? null);
+        return result.lastInsertRowid;
+    },
+    async retractFact(t, factId, retractedBy = 'user-correction') {
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        db.prepare(`
+      UPDATE facts SET is_retracted = 1, retracted_by = ?, is_latest = 0, updated_at = datetime('now')
+      WHERE id = ?
+    `).run(retractedBy, factId);
+    },
+    async reinforceFact(t, factId) {
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        db.prepare(`UPDATE facts SET last_reinforced_at = datetime('now'), updated_at = datetime('now') WHERE id = ?`).run(factId);
+    },
+    async getFactById(t, factId) {
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        const row = db.prepare('SELECT * FROM facts WHERE id = ?').get(factId);
+        return row ? rowToFact(row) : null;
+    },
+    async getFactsForEntity(t, entity, options = {}) {
+        const { latestOnly = true, limit = 20, category } = options;
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        const escapedEntity = entity.toLowerCase().replace(/[%_\\]/g, ch => `\\${ch}`);
+        const entityPattern = `%${escapedEntity}%`;
+        let sql = `
+      SELECT * FROM facts
+      WHERE LOWER(entities_json) LIKE ? ESCAPE '\\'
+        AND COALESCE(is_retracted, 0) = 0
+    `;
+        const params = [entityPattern];
+        if (latestOnly) {
+            sql += ` AND COALESCE(is_latest, 1) = 1`;
+        }
+        if (category) {
+            sql += ` AND category = ?`;
+            params.push(category);
+        }
+        sql += ` ORDER BY timestamp DESC LIMIT ?`;
+        params.push(limit);
+        return db.prepare(sql).all(...params).map(rowToFact);
+    },
+    async markFactSuperseded(t, oldFactId, newFactId) {
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        db.prepare('UPDATE facts SET is_latest = 0, superseded_by = ? WHERE id = ?').run(newFactId, oldFactId);
+    },
+    async factsCount(t) {
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        const { count } = db.prepare('SELECT COUNT(*) as count FROM facts WHERE COALESCE(is_retracted, 0) = 0').get();
+        return count;
+    },
+    async listFacts(t, options = {}) {
+        const { limit = 50, offset = 0, latestOnly = true, category } = options;
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        let sql = 'SELECT * FROM facts WHERE COALESCE(is_retracted, 0) = 0';
+        const params = [];
+        if (latestOnly) {
+            sql += ' AND COALESCE(is_latest, 1) = 1';
+        }
+        if (category) {
+            sql += ' AND category = ?';
+            params.push(category);
+        }
+        sql += ' ORDER BY timestamp DESC LIMIT ? OFFSET ?';
+        params.push(limit, offset);
+        return db.prepare(sql).all(...params).map(rowToFact);
+    },
+    async listTemporalFacts(t, options = {}) {
+        const { includeExpired = false, limit = 50 } = options;
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        let sql = `SELECT * FROM facts WHERE expires_at IS NOT NULL AND COALESCE(is_retracted, 0) = 0`;
+        const params = [];
+        if (!includeExpired) {
+            sql += ` AND (expires_at IS NULL OR expires_at > datetime('now'))`;
+        }
+        sql += ' ORDER BY expires_at ASC LIMIT ?';
+        params.push(limit);
+        return db.prepare(sql).all(...params).map(rowToFact);
+    },
+    async searchFactsFts(t, query, limit = 20) {
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        const sanitized = sanitizeFtsQuery(query);
+        if (!sanitized)
+            return [];
+        try {
+            const rowids = db.prepare(`SELECT rowid FROM facts_fts WHERE facts_fts MATCH ? LIMIT ?`).all(sanitized, limit);
+            if (rowids.length === 0)
+                return [];
+            const placeholders = rowids.map(() => '?').join(',');
+            return db.prepare(`SELECT * FROM facts WHERE id IN (${placeholders})`).all(...rowids.map(r => r.rowid)).map(rowToFact);
+        }
+        catch {
+            return [];
+        }
+    },
+    async getFactContentsByCategory(t, category, limit, order) {
+        ensureFactsFts(t);
+        const db = getDb(t, 'timeline');
+        const where = `
+      WHERE category = ?
+        AND is_latest = 1
+        AND (expires_at IS NULL OR expires_at > datetime('now'))
+    `;
+        if (order === 'recent') {
+            const rows = db.prepare(`
+        SELECT content FROM facts ${where}
+        ORDER BY timestamp DESC
+        LIMIT ?
+      `).all(category, limit);
+            return rows.map(r => r.content);
+        }
+        // frecency: confidence DESC, access_count DESC — with a fallback for older DBs
+        // that predate the access_count column (port-faithful with user-profile.ts).
+        try {
+            const rows = db.prepare(`
+        SELECT content FROM facts ${where}
+        ORDER BY confidence DESC, access_count DESC
+        LIMIT ?
+      `).all(category, limit);
+            return rows.map(r => r.content);
+        }
+        catch {
+            try {
+                const rows = db.prepare(`
+          SELECT content FROM facts ${where}
+          ORDER BY confidence DESC
+          LIMIT ?
+        `).all(category, limit);
+                return rows.map(r => r.content);
+            }
+            catch {
+                return [];
+            }
+        }
+    },
+};
+//# sourceMappingURL=fact-store.js.map

package/dist/fact-store.js.map

@@ -0,0 +1 @@
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package/dist/fts-sanitizer.d.ts

@@ -0,0 +1,30 @@
+/**
+ * FTS5 query sanitizer — Bug Fix #2. (Moved here from brain-core during the
+ * storage-seam migration: FTS5 is a SQLite-dialect concern owned by the impl.
+ * brain-core re-exports `sanitizeFtsQuery` so its public API is unchanged, and
+ * a Stage-3 libsql impl — which keeps FTS5 — can share this verbatim.)
+ *
+ * KAD's naive sanitizer (`replace(/[?.,!'"]/g, '')`) silently breaks on:
+ *   - Hyphenated terms: "post-mortem" → FTS5 reads as "post NOT mortem"
+ *   - Unicode: "café" — the quote-strip mangled accented chars
+ *   - FTS5 operator tokens: bare AND/OR/NOT/NEAR are taken as operators
+ *   - Quoted phrases: embedded quotes broke the MATCH string
+ */
+/**
+ * Convert a natural-language query into a safe FTS5 MATCH expression.
+ *
+ * Strategy:
+ *   - Normalize unicode (NFC)
+ *   - Split on whitespace
+ *   - Strip leading/trailing punctuation from each token
+ *   - Replace hyphens with spaces (FTS5 leading `-` = NOT operator)
+ *   - Drop FTS5 reserved operator words
+ *   - Drop tokens shorter than 2 chars
+ *   - Double-quote each token so FTS5 treats it as a literal phrase
+ *   - Join with OR for broad matching
+ *
+ * Returns empty string when no usable tokens remain; callers must
+ * skip the FTS query entirely on empty string to avoid a syntax error.
+ */
+export declare function sanitizeFtsQuery(query: string): string;
+//# sourceMappingURL=fts-sanitizer.d.ts.map

package/dist/fts-sanitizer.d.ts.map

@@ -0,0 +1 @@
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package/dist/fts-sanitizer.js

@@ -0,0 +1,59 @@
+/**
+ * FTS5 query sanitizer — Bug Fix #2. (Moved here from brain-core during the
+ * storage-seam migration: FTS5 is a SQLite-dialect concern owned by the impl.
+ * brain-core re-exports `sanitizeFtsQuery` so its public API is unchanged, and
+ * a Stage-3 libsql impl — which keeps FTS5 — can share this verbatim.)
+ *
+ * KAD's naive sanitizer (`replace(/[?.,!'"]/g, '')`) silently breaks on:
+ *   - Hyphenated terms: "post-mortem" → FTS5 reads as "post NOT mortem"
+ *   - Unicode: "café" — the quote-strip mangled accented chars
+ *   - FTS5 operator tokens: bare AND/OR/NOT/NEAR are taken as operators
+ *   - Quoted phrases: embedded quotes broke the MATCH string
+ */
+const FTS5_RESERVED = new Set(['NEAR', 'AND', 'OR', 'NOT']);
+/**
+ * Convert a natural-language query into a safe FTS5 MATCH expression.
+ *
+ * Strategy:
+ *   - Normalize unicode (NFC)
+ *   - Split on whitespace
+ *   - Strip leading/trailing punctuation from each token
+ *   - Replace hyphens with spaces (FTS5 leading `-` = NOT operator)
+ *   - Drop FTS5 reserved operator words
+ *   - Drop tokens shorter than 2 chars
+ *   - Double-quote each token so FTS5 treats it as a literal phrase
+ *   - Join with OR for broad matching
+ *
+ * Returns empty string when no usable tokens remain; callers must
+ * skip the FTS query entirely on empty string to avoid a syntax error.
+ */
+export function sanitizeFtsQuery(query) {
+    const normalized = query.normalize('NFC');
+    const rawTokens = normalized.split(/\s+/).filter(Boolean);
+    const quoted = [];
+    for (const raw of rawTokens) {
+        // Strip leading/trailing punctuation (preserve inner chars including unicode)
+        const stripped = raw.replace(/^[.,!?;:'"()\[\]{}|\\^*]+|[.,!?;:'"()\[\]{}|\\^*]+$/g, '');
+        if (!stripped)
+            continue;
+        // Replace hyphens with spaces — FTS5 treats leading "-" as NOT operator
+        const dehyphenated = stripped.replace(/-/g, ' ').trim();
+        if (!dehyphenated)
+            continue;
+        // Split any sub-tokens produced by hyphen removal
+        for (const sub of dehyphenated.split(/\s+/)) {
+            if (sub.length < 2)
+                continue;
+            // Skip bare FTS5 reserved words
+            if (FTS5_RESERVED.has(sub.toUpperCase()))
+                continue;
+            // Escape embedded double-quotes and wrap in quotes
+            const escaped = sub.replace(/"/g, '');
+            if (!escaped)
+                continue;
+            quoted.push(`"${escaped}"`);
+        }
+    }
+    return quoted.join(' OR ');
+}
+//# sourceMappingURL=fts-sanitizer.js.map

package/dist/fts-sanitizer.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts

@@ -1,4 +1,9 @@
 import Database from 'better-sqlite3';
+export { createSqliteStorageProvider } from './provider.js';
+export { sanitizeFtsQuery } from './fts-sanitizer.js';
+export { resetTimelineSchemaCache } from './timeline.js';
+export { resetEntityGraphSchemaCache } from './entity-graph.js';
+export { ensureSleepSchema, recoverStaleSleepRuns, resetSleepSchemaCache } from './sleep-store.js';
 import type { TenantContext } from '@kybernesis/brain-contracts';
 export type DbKind = 'timeline' | 'entityGraph' | 'vectors' | 'sleep' | 'idempotency';
 /**

package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -1,6 +1,13 @@
 import Database from 'better-sqlite3';
 import { mkdirSync } from 'node:fs';
 import { dirname } from 'node:path';
+export { createSqliteStorageProvider } from './provider.js';
+export { sanitizeFtsQuery } from './fts-sanitizer.js';
+export { resetTimelineSchemaCache } from './timeline.js';
+export { resetEntityGraphSchemaCache } from './entity-graph.js';
+// Sleep schema helpers — public re-export surface for brain-core/sleep/db.ts.
+// They live here (where raw getDb is allowed) so brain-core/src stays getDb-free.
+export { ensureSleepSchema, recoverStaleSleepRuns, resetSleepSchemaCache } from './sleep-store.js';
 const pool = new Map();
 function resolveDbPath(t, kind) {
     switch (kind) {

package/dist/index.js.map

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package/dist/provider.d.ts

@@ -0,0 +1,16 @@
+/**
+ * SQLite StorageProvider — the default backend wired by brain-core's seam.
+ *
+ * The persistence stores (timeline, entities, facts) + the minimal sleep read +
+ * the lazy vector store are all real as of 0.3.0. The sleep maintenance engine,
+ * hybrid-search, and fact-retrieval remain on guarded direct getDb (deferred to
+ * 0.4.0 — see docs/specs/storage-architecture-0.3-and-0.4.md).
+ *
+ * The SQL that lands here is moved verbatim (port-faithful) from the
+ * corresponding brain-core module; behaviour is held constant.
+ */
+import type { StorageProvider } from '@kybernesis/brain-contracts';
+/** Reset the lazy vec-store cache (test/utility). */
+export declare function resetLazyVectorStore(): void;
+export declare function createSqliteStorageProvider(): StorageProvider;
+//# sourceMappingURL=provider.d.ts.map

package/dist/provider.d.ts.map

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