@kybernesis/brain-core 0.5.0 → 0.6.1

package/dist/entity-graph.d.ts

@@ -1,6 +1,6 @@
 /**
  * Entity graph — public API. Storage now lives behind the seam
- * (getStorage().entities); these are thin, signature-stable delegators plus the
+ * (getStorage().repositories.entities); these are thin, signature-stable delegators plus the
  * `linkEntitiesFromConversation` orchestrator that composes findOrCreateEntity +
  * addEntityMention (Stage 1, G3). The two internal transactions (mergeEntities,
  * deleteEntity) and the historical merge-edge-relocation fix live in the impl.

package/dist/entity-graph.js

@@ -1,28 +1,28 @@
 /**
  * Entity graph — public API. Storage now lives behind the seam
- * (getStorage().entities); these are thin, signature-stable delegators plus the
+ * (getStorage().repositories.entities); these are thin, signature-stable delegators plus the
  * `linkEntitiesFromConversation` orchestrator that composes findOrCreateEntity +
  * addEntityMention (Stage 1, G3). The two internal transactions (mergeEntities,
  * deleteEntity) and the historical merge-edge-relocation fix live in the impl.
  */
 import { getStorage } from './storage.js';
 export async function findOrCreateEntity(t, name, type, timestamp) {
-    return getStorage().entities.findOrCreateEntity(t, name, type, timestamp);
+    return getStorage().repositories.entities.findOrCreateEntity(t, name, type, timestamp);
 }
 export async function addEntityAlias(t, entityId, alias) {
-    return getStorage().entities.addEntityAlias(t, entityId, alias);
+    return getStorage().repositories.entities.addEntityAlias(t, entityId, alias);
 }
 export async function addEntityMention(t, entityId, conversationId, sourcePath, context, timestamp, sourceType = 'chat', confidence = 0.85) {
-    return getStorage().entities.addEntityMention(t, entityId, conversationId, sourcePath, context, timestamp, sourceType, confidence);
+    return getStorage().repositories.entities.addEntityMention(t, entityId, conversationId, sourcePath, context, timestamp, sourceType, confidence);
 }
 export async function linkEntities(t, sourceId, targetId, relationship = 'co-occurred') {
-    return getStorage().entities.linkEntities(t, sourceId, targetId, relationship);
+    return getStorage().repositories.entities.linkEntities(t, sourceId, targetId, relationship);
 }
 export async function linkEntitiesWithType(t, sourceId, targetId, options) {
-    return getStorage().entities.linkEntitiesWithType(t, sourceId, targetId, options);
+    return getStorage().repositories.entities.linkEntitiesWithType(t, sourceId, targetId, options);
 }
 export async function getTypedRelationships(t, entityId) {
-    return getStorage().entities.getTypedRelationships(t, entityId);
+    return getStorage().repositories.entities.getTypedRelationships(t, entityId);
 }
 /** Orchestrator: compose findOrCreateEntity + addEntityMention per entity. */
 export async function linkEntitiesFromConversation(t, conversationId, sourcePath, timestamp, entities) {
@@ -34,66 +34,66 @@ export async function linkEntitiesFromConversation(t, conversationId, sourcePath
     }
 }
 export async function getEntityContext(t, nameOrId) {
-    return getStorage().entities.getEntityContext(t, nameOrId);
+    return getStorage().repositories.entities.getEntityContext(t, nameOrId);
 }
 export async function searchEntities(t, query, options = {}) {
-    return getStorage().entities.searchEntities(t, query, options);
+    return getStorage().repositories.entities.searchEntities(t, query, options);
 }
 export async function getRecentEntities(t, limit = 20) {
-    return getStorage().entities.getRecentEntities(t, limit);
+    return getStorage().repositories.entities.getRecentEntities(t, limit);
 }
 export async function getMostMentionedEntities(t, options = {}) {
-    return getStorage().entities.getMostMentionedEntities(t, options);
+    return getStorage().repositories.entities.getMostMentionedEntities(t, options);
 }
 export async function getEntityGraphStats(t) {
-    return getStorage().entities.stats(t);
+    return getStorage().repositories.entities.stats(t);
 }
 export async function detectEntitiesInQuery(t, query) {
-    return getStorage().entities.detectEntitiesInQuery(t, query);
+    return getStorage().repositories.entities.detectEntitiesInQuery(t, query);
 }
 export async function mergeEntities(t, keepId, removeId, reason, confidence, aiRationale, mergedBy) {
-    return getStorage().entities.mergeEntities(t, keepId, removeId, reason, confidence, aiRationale, mergedBy);
+    return getStorage().repositories.entities.mergeEntities(t, keepId, removeId, reason, confidence, aiRationale, mergedBy);
 }
 export async function deleteEntity(t, entityId, reason, mergedBy) {
-    return getStorage().entities.deleteEntity(t, entityId, reason, mergedBy);
+    return getStorage().repositories.entities.deleteEntity(t, entityId, reason, mergedBy);
 }
 export async function getEntityProfile(t, entityId) {
-    return getStorage().entities.getEntityProfile(t, entityId);
+    return getStorage().repositories.entities.getEntityProfile(t, entityId);
 }
 export async function saveEntityProfile(t, entityId, profile, factCount) {
-    return getStorage().entities.saveEntityProfile(t, entityId, profile, factCount);
+    return getStorage().repositories.entities.saveEntityProfile(t, entityId, profile, factCount);
 }
 export async function createContradiction(t, entityId, factAId, factBId, factA, factB, description) {
-    return getStorage().entities.createContradiction(t, entityId, factAId, factBId, factA, factB, description);
+    return getStorage().repositories.entities.createContradiction(t, entityId, factAId, factBId, factA, factB, description);
 }
 export async function getOpenContradictions(t, entityId) {
-    return getStorage().entities.getOpenContradictions(t, entityId);
+    return getStorage().repositories.entities.getOpenContradictions(t, entityId);
 }
 export async function resolveContradiction(t, contradictionId, resolvedBy) {
-    return getStorage().entities.resolveContradiction(t, contradictionId, resolvedBy);
+    return getStorage().repositories.entities.resolveContradiction(t, contradictionId, resolvedBy);
 }
 export async function applyContradictions(t, entityId, factIds) {
-    return getStorage().entities.applyContradictions(t, entityId, factIds);
+    return getStorage().repositories.entities.applyContradictions(t, entityId, factIds);
 }
 export async function saveEntityInsight(t, entityId, insightType, insight, reasoning, confidence, sourceEntityIds = [], expiresAt) {
-    return getStorage().entities.saveEntityInsight(t, entityId, insightType, insight, reasoning, confidence, sourceEntityIds, expiresAt);
+    return getStorage().repositories.entities.saveEntityInsight(t, entityId, insightType, insight, reasoning, confidence, sourceEntityIds, expiresAt);
 }
 export async function getEntityInsights(t, entityId, minConfidence = 0.60) {
-    return getStorage().entities.getEntityInsights(t, entityId, minConfidence);
+    return getStorage().repositories.entities.getEntityInsights(t, entityId, minConfidence);
 }
 export async function markInsightsStale(t, entityId) {
-    return getStorage().entities.markInsightsStale(t, entityId);
+    return getStorage().repositories.entities.markInsightsStale(t, entityId);
 }
 export async function getEntitiesForReasoning(t, limit = 5, staleDays = 7, recencyDays = 14) {
-    return getStorage().entities.getEntitiesForReasoning(t, limit, staleDays, recencyDays);
+    return getStorage().repositories.entities.getEntitiesForReasoning(t, limit, staleDays, recencyDays);
 }
 export async function markEntityReasoned(t, entityId) {
-    return getStorage().entities.markEntityReasoned(t, entityId);
+    return getStorage().repositories.entities.markEntityReasoned(t, entityId);
 }
 export async function pinEntity(t, entityId, pinned = true) {
-    return getStorage().entities.pinEntity(t, entityId, pinned);
+    return getStorage().repositories.entities.pinEntity(t, entityId, pinned);
 }
 export async function listPinned(t, type) {
-    return getStorage().entities.listPinned(t, type);
+    return getStorage().repositories.entities.listPinned(t, type);
 }
 //# sourceMappingURL=entity-graph.js.map

package/dist/entity-graph.js.map

@@ -1 +1 @@
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package/dist/fact-retrieval.d.ts.map

@@ -1 +1 @@
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package/dist/fact-retrieval.js

@@ -11,7 +11,7 @@
  * Bug Fix #2 applied here: uses sanitizeFtsQuery for all FTS MATCH calls.
  * Bug Fix #9 applied here: wordMatchRatio denominator is FTS-query token count.
  */
-import { getDb } from '@kybernesis/brain-storage-sqlite';
+import { getStorage } from './storage.js';
 import { ensureFactsTable, getFactsForEntity } from './fact-store.js';
 import { semanticSearch } from './vectors.js';
 import { sanitizeFtsQuery } from './fts-sanitizer.js';
@@ -45,7 +45,6 @@ function wordOverlap(a, b) {
 // ─── Layer 1: Direct fact search ─────────────────────────────────────────────
 async function searchFactsDirect(t, query, limit) {
     await ensureFactsTable(t);
-    const db = getDb(t, 'timeline');
     const results = [];
     // Bug Fix #2: use sanitizeFtsQuery instead of naive replace
     const sanitized = sanitizeFtsQuery(query);
@@ -54,39 +53,25 @@ async function searchFactsDirect(t, query, limit) {
         ? sanitized.split(' OR ').map(t => t.replace(/^"|"$/g, '').toLowerCase()).filter(Boolean)
         : [];
     if (sanitized) {
-        try {
-            const ftsRows = db.prepare(`
-        SELECT f.id, f.content, f.category, f.confidence, f.timestamp,
-               f.entities_json, f.is_latest, f.expires_at, f.source_conversation_id
-        FROM facts f
-        JOIN facts_fts fts ON f.id = fts.rowid
-        WHERE facts_fts MATCH ?
-          AND COALESCE(f.is_latest, 1) = 1
-          AND (f.expires_at IS NULL OR f.expires_at > datetime('now'))
-        ORDER BY rank
-        LIMIT ?
-      `).all(sanitized, limit * 2);
-            for (const row of ftsRows) {
-                const contentLower = row.content.toLowerCase();
-                // Bug Fix #9: denominator is ftsTokens.length, not raw query word count
-                const matchedCount = ftsTokens.filter(w => contentLower.includes(w)).length;
-                const wordMatchRatio = ftsTokens.length > 0 ? matchedCount / ftsTokens.length : 0;
-                const score = 0.5 + wordMatchRatio * 0.5;
-                results.push({
-                    id: row.id,
-                    content: row.content,
-                    category: row.category || 'general',
-                    confidence: row.confidence || 0.7,
-                    timestamp: row.timestamp,
-                    entities: JSON.parse(row.entities_json || '[]'),
-                    score,
-                    source: 'direct',
-                    source_conversation_id: row.source_conversation_id,
-                });
-            }
-        }
-        catch (err) {
-            console.warn('[brain-core/fact-retrieval] FTS search failed', { err: String(err) });
+        // Candidate fetch behind the seam; scoring (Bug Fix #9 ratio) stays here.
+        const ftsRows = await getStorage().domain.factRetrieval.searchFactsByFts(t, sanitized, limit * 2);
+        for (const row of ftsRows) {
+            const contentLower = row.content.toLowerCase();
+            // Bug Fix #9: denominator is ftsTokens.length, not raw query word count
+            const matchedCount = ftsTokens.filter(w => contentLower.includes(w)).length;
+            const wordMatchRatio = ftsTokens.length > 0 ? matchedCount / ftsTokens.length : 0;
+            const score = 0.5 + wordMatchRatio * 0.5;
+            results.push({
+                id: row.id,
+                content: row.content,
+                category: row.category || 'general',
+                confidence: row.confidence || 0.7,
+                timestamp: row.timestamp,
+                entities: JSON.parse(row.entities_json || '[]'),
+                score,
+                source: 'direct',
+                source_conversation_id: row.source_conversation_id ?? undefined,
+            });
         }
     }
     // Semantic search (no-op until Day 4 vectors)
@@ -137,46 +122,22 @@ async function searchFactsDirect(t, query, limit) {
     return deduped.sort((a, b) => b.score - a.score).slice(0, limit);
 }
 // ─── Layer 2: Entity expansion ────────────────────────────────────────────────
+// hop-distance penalty: scoring policy, applied in brain-core over the
+// {id, hopDistance} the seam's traverseEntityGraph returns.
 const HOP_DISTANCE_PENALTY = { 0: 1.0, 1: 0.7, 2: 0.5, 3: 0.3 };
-function traverseEntityGraph(entityDb, seedIds, maxHops, maxEntities) {
-    const visited = new Map();
-    for (const id of seedIds)
-        visited.set(id, 0);
-    let frontier = [...seedIds];
-    for (let hop = 0; hop < maxHops && frontier.length > 0; hop++) {
-        const next = [];
-        for (const eid of frontier) {
-            try {
-                const connected = entityDb.prepare(`
-          SELECT CASE WHEN source_id = ? THEN target_id ELSE source_id END as cid
-          FROM entity_relations
-          WHERE source_id = ? OR target_id = ?
-          ORDER BY strength DESC LIMIT 10
-        `).all(eid, eid, eid);
-                for (const c of connected) {
-                    if (!visited.has(c.cid) && visited.size < maxEntities) {
-                        visited.set(c.cid, hop + 1);
-                        next.push(c.cid);
-                    }
-                }
-            }
-            catch { /* skip */ }
-        }
-        frontier = next;
-    }
-    return Array.from(visited.entries()).map(([id, hopDistance]) => ({ id, hopDistance }));
-}
 async function expandByEntities(t, query, existingFacts, limit) {
     const expanded = [];
     try {
-        const entityDb = getDb(t, 'entityGraph');
         const queryLower = query.toLowerCase();
-        const allEntities = entityDb.prepare('SELECT id, name FROM entities ORDER BY mention_count DESC LIMIT 200').all();
+        // Seed list = top entities by mention_count (same ordering as the old inline
+        // query) via the entity repository; the query-name filter + traversal seeds
+        // are brain-core policy.
+        const allEntities = await getStorage().repositories.entities.getMostMentionedEntities(t, { limit: 200 });
         const matched = allEntities.filter(e => e.name.length >= 3 && queryLower.includes(e.name.toLowerCase()));
         if (matched.length === 0)
             return [];
         const seedIds = matched.slice(0, 5).map(e => e.id);
-        const reached = traverseEntityGraph(entityDb, seedIds, 1, 10);
+        const reached = await getStorage().domain.factRetrieval.traverseEntityGraph(t, seedIds, 1, 10);
         const nameMap = new Map(allEntities.map(e => [e.id, e.name]));
         const existingContent = existingFacts.map(f => f.content);
         for (const r of reached) {
@@ -215,36 +176,23 @@ async function expandByEntities(t, query, existingFacts, limit) {
 async function findSupportingContext(t, facts, maxFacts, maxPerFact) {
     const supporting = [];
     try {
-        const db = getDb(t, 'timeline');
+        const fr = getStorage().domain.factRetrieval;
         for (const fact of facts.slice(0, maxFacts)) {
-            let parentPath = null;
-            try {
-                const row = db.prepare('SELECT source_conversation_id FROM facts WHERE id = ?').get(fact.id);
-                if (row)
-                    parentPath = row.source_conversation_id;
-            }
-            catch { /* best-effort */ }
+            const parentPath = await fr.getFactConversationId(t, fact.id);
             if (!parentPath)
                 continue;
-            try {
-                const segs = db.prepare(`
-          SELECT source_path, summary, timestamp FROM timeline_events
-          WHERE source_path LIKE ? OR source_path = ?
-          ORDER BY timestamp ASC LIMIT ?
-        `).all(`${parentPath}%`, parentPath, maxPerFact);
-                for (const seg of segs) {
-                    if (!seg.summary || seg.summary.trim().length < 10)
-                        continue;
-                    supporting.push({
-                        content: seg.summary,
-                        source_path: seg.source_path,
-                        timestamp: seg.timestamp,
-                        related_fact_id: fact.id,
-                        score: fact.score,
-                    });
-                }
+            const segs = await fr.findSupportingSegments(t, parentPath, maxPerFact);
+            for (const seg of segs) {
+                if (!seg.summary || seg.summary.trim().length < 10)
+                    continue;
+                supporting.push({
+                    content: seg.summary,
+                    source_path: seg.source_path,
+                    timestamp: seg.timestamp,
+                    related_fact_id: fact.id,
+                    score: fact.score,
+                });
             }
-            catch { /* best-effort */ }
         }
     }
     catch (err) {
@@ -302,29 +250,16 @@ export async function factFirstSearch(t, query, options = {}) {
     let bridgeCount = 0;
     const seenIds = new Set(allFacts.map(f => f.id));
     try {
-        const db = getDb(t, 'timeline');
+        const fr = getStorage().domain.factRetrieval;
         for (const topFact of allFacts.slice(0, 5)) {
             let convId = topFact.source_conversation_id;
             if (!convId && topFact.id > 0) {
-                try {
-                    const row = db.prepare('SELECT source_conversation_id FROM facts WHERE id = ?')
-                        .get(topFact.id);
-                    if (row)
-                        convId = row.source_conversation_id;
-                }
-                catch { /* best-effort */ }
+                convId = (await fr.getFactConversationId(t, topFact.id)) ?? undefined;
             }
             if (!convId)
                 continue;
             try {
-                const nearby = db.prepare(`
-          SELECT id, content, category, confidence, timestamp, entities_json, source_conversation_id
-          FROM facts
-          WHERE source_conversation_id = ? AND id != ?
-            AND COALESCE(is_latest, 1) = 1
-            AND (expires_at IS NULL OR expires_at > datetime('now'))
-          ORDER BY ABS(id - ?) ASC LIMIT 3
-        `).all(convId, topFact.id, topFact.id);
+                const nearby = await fr.nearbyFactsInConversation(t, convId, topFact.id, 3);
                 for (const n of nearby) {
                     if (!seenIds.has(n.id)) {
                         seenIds.add(n.id);
@@ -334,7 +269,7 @@ export async function factFirstSearch(t, query, options = {}) {
                             confidence: n.confidence || 0.7, timestamp: n.timestamp,
                             entities: JSON.parse(n.entities_json || '[]'),
                             score: topFact.score * 0.6, source: 'scene_expansion',
-                            source_conversation_id: n.source_conversation_id,
+                            source_conversation_id: n.source_conversation_id ?? undefined,
                         });
                     }
                 }
@@ -346,13 +281,7 @@ export async function factFirstSearch(t, query, options = {}) {
         if (topFacts.length >= 2) {
             const entitySets = topFacts.map(f => new Set(f.entities.map(e => e.toLowerCase())));
             try {
-                const bridgeCandidates = db.prepare(`
-          SELECT id, content, category, confidence, timestamp, entities_json
-          FROM facts
-          WHERE COALESCE(is_latest, 1) = 1
-            AND (expires_at IS NULL OR expires_at > datetime('now'))
-          LIMIT 100
-        `).all();
+                const bridgeCandidates = await fr.listBridgeCandidates(t, 100);
                 for (const candidate of bridgeCandidates) {
                     if (seenIds.has(candidate.id))
                         continue;

package/dist/fact-retrieval.js.map

@@ -1 +1 @@
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package/dist/fact-store.d.ts

@@ -1,10 +1,10 @@
 /**
  * Fact store — public API. Behaviour now lives behind the storage seam
- * (getStorage().facts); these are thin, signature-stable delegators so
+ * (getStorage().repositories.facts); these are thin, signature-stable delegators so
  * consumers and internal callers are unchanged (Stage 1, G1).
  */
 import type { TenantContext, FactCategory, Fact } from '@kybernesis/brain-contracts';
-export declare const VALID_CATEGORIES: Set<"biographical" | "preference" | "relationship" | "plan" | "event" | "temporal" | "opinion" | "general">;
+export declare const VALID_CATEGORIES: Set<"biographical" | "preference" | "event" | "relationship" | "temporal" | "opinion" | "plan" | "general">;
 export declare function ensureFactsTable(t: TenantContext): Promise<void>;
 export declare function storeFact(t: TenantContext, fact: Omit<Fact, 'id' | 'created_at' | 'is_latest' | 'access_count' | 'is_retracted'>): Promise<number>;
 export declare function retractFact(t: TenantContext, factId: number, retractedBy?: string): Promise<void>;

package/dist/fact-store.js

@@ -1,6 +1,6 @@
 /**
  * Fact store — public API. Behaviour now lives behind the storage seam
- * (getStorage().facts); these are thin, signature-stable delegators so
+ * (getStorage().repositories.facts); these are thin, signature-stable delegators so
  * consumers and internal callers are unchanged (Stage 1, G1).
  */
 import { getStorage } from './storage.js';
@@ -9,36 +9,36 @@ export const VALID_CATEGORIES = new Set([
     'temporal', 'opinion', 'plan', 'general',
 ]);
 export async function ensureFactsTable(t) {
-    return getStorage().facts.ensureFactsTable(t);
+    return getStorage().repositories.facts.ensureFactsTable(t);
 }
 export async function storeFact(t, fact) {
-    return getStorage().facts.storeFact(t, fact);
+    return getStorage().repositories.facts.storeFact(t, fact);
 }
 export async function retractFact(t, factId, retractedBy = 'user-correction') {
-    return getStorage().facts.retractFact(t, factId, retractedBy);
+    return getStorage().repositories.facts.retractFact(t, factId, retractedBy);
 }
 export async function reinforceFact(t, factId) {
-    return getStorage().facts.reinforceFact(t, factId);
+    return getStorage().repositories.facts.reinforceFact(t, factId);
 }
 export async function getFactById(t, factId) {
-    return getStorage().facts.getFactById(t, factId);
+    return getStorage().repositories.facts.getFactById(t, factId);
 }
 export async function getFactsForEntity(t, entity, options = {}) {
-    return getStorage().facts.getFactsForEntity(t, entity, options);
+    return getStorage().repositories.facts.getFactsForEntity(t, entity, options);
 }
 export async function markFactSuperseded(t, oldFactId, newFactId) {
-    return getStorage().facts.markFactSuperseded(t, oldFactId, newFactId);
+    return getStorage().repositories.facts.markFactSuperseded(t, oldFactId, newFactId);
 }
 export async function factsCount(t) {
-    return getStorage().facts.factsCount(t);
+    return getStorage().repositories.facts.factsCount(t);
 }
 export async function listFacts(t, options = {}) {
-    return getStorage().facts.listFacts(t, options);
+    return getStorage().repositories.facts.listFacts(t, options);
 }
 export async function listTemporalFacts(t, options = {}) {
-    return getStorage().facts.listTemporalFacts(t, options);
+    return getStorage().repositories.facts.listTemporalFacts(t, options);
 }
 export async function searchFactsFts(t, query, limit = 20) {
-    return getStorage().facts.searchFactsFts(t, query, limit);
+    return getStorage().repositories.facts.searchFactsFts(t, query, limit);
 }
 //# sourceMappingURL=fact-store.js.map

package/dist/fact-store.js.map

@@ -1 +1 @@
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package/dist/hybrid-search.d.ts

@@ -5,7 +5,12 @@
  * search. Uses Reciprocal Rank Fusion (RRF k=60) to merge ranked lists.
  *
  * Bug Fix #3: the null `getSleepDb` stub that made sleep-edge enrichment
- * dead code has been deleted. Uses `getDb(t, 'sleep')` directly.
+ * dead code has been deleted. Sleep edges come through the storage seam.
+ *
+ * Storage untangle (gate U1): all candidate/factor SQL now lives behind
+ * getStorage().domain.search (+ repositories.sleep for memory edges). This
+ * module holds only the SCORING — RRF fusion, metadata weights, tier boosts,
+ * segment dedup — over rows the seam returns. No raw database handles here.
  */
 import type { TenantContext } from '@kybernesis/brain-contracts';
 export interface HybridSearchResult {

package/dist/hybrid-search.d.ts.map

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