@kybernesis/brain-core 0.2.0 → 0.6.0

package/dist/sleep/steps/entity-hygiene.js

@@ -14,7 +14,7 @@
  * pruneMinAgeDays AND is_pinned IS NULL/0 AND no entity_relations.
  * A v1 port dropped filter(s) and over-pruned the entity graph.
  */
-import { getDb } from '@kybernesis/brain-storage-sqlite';
+import { getStorage } from '../../storage.js';
 import { callClaude } from '../../claude-call.js';
 import { mergeEntities, deleteEntity, getEntityProfile, saveEntityProfile, } from '../../entity-graph.js';
 import { getFactsForEntity } from '../../fact-store.js';
@@ -73,28 +73,18 @@ function areNicknames(a, b) {
         return true;
     return false;
 }
-function buildEntityProfile(db, entity) {
-    const mentions = db.prepare(`
-    SELECT context FROM entity_mentions
-    WHERE entity_id = ? AND context IS NOT NULL AND context != ''
-    ORDER BY timestamp DESC, context ASC LIMIT 5
-  `).all(entity.id);
-    const related = db.prepare(`
-    SELECT DISTINCT e.name FROM entity_relations r
-    JOIN entities e ON (
-      (r.source_id = ? AND e.id = r.target_id) OR
-      (r.target_id = ? AND e.id = r.source_id)
-    )
-    ORDER BY r.strength DESC, e.name ASC LIMIT 10
-  `).all(entity.id, entity.id);
+async function buildEntityProfile(t, entity) {
+    // SQL (mention contexts + related names) behind the seam; the slice(0,200)
+    // presentation trim stays here.
+    const { contexts, related } = await getStorage().domain.sleep.fetchEntityProfile(t, entity.id);
     return {
         id: entity.id, name: entity.name, type: entity.type,
         mentions: entity.mention_count,
-        sampleContexts: mentions.map(m => m.context.slice(0, 200)),
-        relatedEntities: related.map(r => r.name),
+        sampleContexts: contexts.map(c => c.slice(0, 200)),
+        relatedEntities: related,
     };
 }
-function buildSameNameCandidates(db, groups) {
+async function buildSameNameCandidates(t, groups) {
     const candidates = [];
     for (const group of groups) {
         const ids = group.ids.split(',').map(Number);
@@ -108,8 +98,8 @@ function buildSameNameCandidates(db, groups) {
         for (let i = 0; i < ids.length; i++) {
             if (i === keepIdx)
                 continue;
-            const keepProfile = buildEntityProfile(db, { id: ids[keepIdx], name: names[keepIdx], type: types[keepIdx], mention_count: mentions[keepIdx] });
-            const removeProfile = buildEntityProfile(db, { id: ids[i], name: names[i], type: types[i], mention_count: mentions[i] });
+            const keepProfile = await buildEntityProfile(t, { id: ids[keepIdx], name: names[keepIdx], type: types[keepIdx], mention_count: mentions[keepIdx] });
+            const removeProfile = await buildEntityProfile(t, { id: ids[i], name: names[i], type: types[i], mention_count: mentions[i] });
             candidates.push({ keep: keepProfile, remove: removeProfile, matchReason: 'same-name-different-type' });
         }
     }
@@ -168,11 +158,8 @@ function detectVariantMatch(nameA, nameB, typeA, typeB) {
     }
     return null;
 }
-function findVariantCandidates(db) {
-    const entities = db.prepare(`
-    SELECT id, name, normalized_name, type, mention_count
-    FROM entities ORDER BY mention_count DESC, normalized_name ASC, type ASC LIMIT 500
-  `).all();
+async function findVariantCandidates(t) {
+    const entities = await getStorage().domain.sleep.fetchVariantEntities(t, 500);
     const candidates = [];
     const seen = new Set();
     const MAX_CANDIDATES = 50;
@@ -194,8 +181,8 @@ function findVariantCandidates(db) {
             seen.add(key);
             const [keep, remove] = a.mention_count >= b.mention_count ? [a, b] : [b, a];
             candidates.push({
-                keep: buildEntityProfile(db, keep),
-                remove: buildEntityProfile(db, remove),
+                keep: await buildEntityProfile(t, keep),
+                remove: await buildEntityProfile(t, remove),
                 matchReason,
             });
         }
@@ -325,20 +312,12 @@ export async function runEntityHygieneStep(t, config) {
     let pruned = 0;
     let assessed = 0;
     let totalActions = 0;
-    const db = getDb(t, 'entityGraph');
+    const maint = getStorage().domain.sleep;
     try {
         // Phase 0: Clean orphans
-        db.prepare(`
-      DELETE FROM entity_relations WHERE
-        source_id NOT IN (SELECT id FROM entities) OR
-        target_id NOT IN (SELECT id FROM entities)
-    `).run();
-        db.prepare(`
-      DELETE FROM entity_mentions WHERE
-        entity_id NOT IN (SELECT id FROM entities)
-    `).run();
+        await maint.cleanOrphans(t);
         // Phase 1: Pattern-matched artifacts
-        const allEntities = db.prepare('SELECT id, name, type, mention_count FROM entities').all();
+        const allEntities = await maint.fetchAllEntities(t);
         for (const entity of allEntities) {
             if (totalActions >= config.maxMergesPerRun)
                 break;
@@ -357,18 +336,9 @@ export async function runEntityHygieneStep(t, config) {
             return buildResult(artifactsCleaned, merged, pruned, assessed, errors);
         }
         // Phase 2: Same-name-different-type
-        const sameNameGroups = db.prepare(`
-      SELECT normalized_name,
-             GROUP_CONCAT(id        ORDER BY type) as ids,
-             GROUP_CONCAT(type      ORDER BY type) as types,
-             GROUP_CONCAT(name      ORDER BY type) as names,
-             GROUP_CONCAT(mention_count ORDER BY type) as mention_counts
-      FROM entities
-      GROUP BY normalized_name
-      HAVING COUNT(DISTINCT type) > 1
-    `).all();
+        const sameNameGroups = await maint.fetchSameNameGroups(t);
         if (sameNameGroups.length > 0) {
-            const candidates = buildSameNameCandidates(db, sameNameGroups);
+            const candidates = await buildSameNameCandidates(t, sameNameGroups);
             const batch = candidates.slice(0, config.maxMergesPerRun - totalActions);
             if (batch.length > 0) {
                 const { mergeCount, assessCount, errs } = await assessAndMerge(t, batch, 0.6, 'same-name');
@@ -382,7 +352,7 @@ export async function runEntityHygieneStep(t, config) {
             return buildResult(artifactsCleaned, merged, pruned, assessed, errors);
         }
         // Phase 3: Variant names
-        const variantCandidates = findVariantCandidates(db);
+        const variantCandidates = await findVariantCandidates(t);
         if (variantCandidates.length > 0) {
             const batch = variantCandidates.slice(0, config.maxMergesPerRun - totalActions);
             if (batch.length > 0) {
@@ -401,15 +371,7 @@ export async function runEntityHygieneStep(t, config) {
         //   4. is_pinned IS NULL OR is_pinned = 0
         //   5. NOT EXISTS in entity_relations
         const pruneDate = new Date(Date.now() - config.pruneMinAgeDays * 24 * 60 * 60 * 1000).toISOString();
-        const noisyEntities = db.prepare(`
-      SELECT e.id, e.name, e.type, e.mention_count, e.last_seen, e.is_pinned
-      FROM entities e
-      WHERE e.mention_count <= 1
-        AND e.type = 'topic'
-        AND e.last_seen < ?
-        AND (e.is_pinned IS NULL OR e.is_pinned = 0)
-        AND NOT EXISTS (SELECT 1 FROM entity_relations WHERE source_id = e.id OR target_id = e.id)
-    `).all(pruneDate);
+        const noisyEntities = await maint.fetchPruneCandidates(t, pruneDate);
         for (const entity of noisyEntities) {
             if (totalActions >= config.maxMergesPerRun)
                 break;
@@ -428,11 +390,7 @@ export async function runEntityHygieneStep(t, config) {
     }
     // Phase 5: Narrative profiles for top entities
     try {
-        const profileCandidates = db.prepare(`
-      SELECT id, name, type FROM entities
-      WHERE mention_count >= 3
-      ORDER BY mention_count DESC, name ASC, type ASC LIMIT 10
-    `).all();
+        const profileCandidates = await getStorage().domain.sleep.fetchProfileCandidates(t, 10);
         let profilesGenerated = 0;
         const maxProfiles = 5;
         for (const entity of profileCandidates) {

package/dist/sleep/steps/entity-hygiene.js.map

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package/dist/sleep/steps/link.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"link.d.ts","sourceRoot":"","sources":["../../../src/sleep/steps/link.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,6BAA6B,CAAC;AAIjE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAEhD,MAAM,WAAW,UAAU;IACzB,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;CACnB;AA4CD,wBAAsB,WAAW,CAC/B,CAAC,EAAE,aAAa,EAChB,MAAM,EAAE,WAAW,GAClB,OAAO,CAAC,UAAU,CAAC,CA4LrB"}
+{"version":3,"file":"link.d.ts","sourceRoot":"","sources":["../../../src/sleep/steps/link.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,6BAA6B,CAAC;AAGjE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAEhD,MAAM,WAAW,UAAU;IACzB,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;CACnB;AA4CD,wBAAsB,WAAW,CAC/B,CAAC,EAAE,aAAa,EAChB,MAAM,EAAE,WAAW,GAClB,OAAO,CAAC,UAAU,CAAC,CA4JrB"}

package/dist/sleep/steps/link.js

@@ -9,9 +9,8 @@
  *
  * Phase 2 retypes existing 'related' edges to more-specific relations.
  */
-import { getDb } from '@kybernesis/brain-storage-sqlite';
+import { getStorage } from '../../storage.js';
 import { jaccardSimilarity } from '../utils/jaccard.js';
-import { ensureSleepSchema } from '../db.js';
 function safeParseArray(json) {
     if (!json)
         return [];
@@ -50,20 +49,14 @@ const EXCLUDED_TAGS = new Set([
     'conversation', 'transcript', 'idea', 'json', 'text', 'audio',
 ]);
 export async function runLinkStep(t, config) {
-    const timeline = getDb(t, 'timeline');
-    const sleep = ensureSleepSchema(t);
+    const sleepRepo = getStorage().repositories.sleep;
+    // Self-sufficiency parity: ensure the sleep schema at entry (standalone-safe).
+    await sleepRepo.ensureSchema(t);
     let created = 0;
     let retyped = 0;
     const errors = [];
     try {
-        const items = timeline.prepare(`
-      SELECT id, source_path, title, tier, tags_json, topics_json, entities_json
-      FROM timeline_events
-      WHERE (tags_json IS NOT NULL AND tags_json != '[]')
-         OR (topics_json IS NOT NULL AND topics_json != '[]')
-      ORDER BY priority DESC
-      LIMIT ?
-    `).all(config.batchSize);
+        const items = await sleepRepo.fetchLinkCandidates(t, config.batchSize);
         if (items.length < 2)
             return { count: 0, processed: 0 };
         const itemLookup = new Map();
@@ -104,10 +97,7 @@ export async function runLinkStep(t, config) {
             const tags = itemTags.get(item.source_path);
             if (!tags || tags.size === 0)
                 continue;
-            const edgeCount = sleep.prepare(`
-        SELECT COUNT(*) as count FROM memory_edges
-        WHERE from_path = ? OR to_path = ?
-      `).get(item.source_path, item.source_path)?.count || 0;
+            const edgeCount = (await sleepRepo.getEdgeStats(t, item.source_path)).count;
             if (edgeCount >= config.maxEdgesPerMemory)
                 continue;
             const candidates = new Map();
@@ -128,17 +118,10 @@ export async function runLinkStep(t, config) {
                 if (seen.has(pairKey))
                     continue;
                 seen.add(pairKey);
-                const otherEdgeCount = sleep.prepare(`
-          SELECT COUNT(*) as count FROM memory_edges
-          WHERE from_path = ? OR to_path = ?
-        `).get(otherPath, otherPath)?.count || 0;
+                const otherEdgeCount = (await sleepRepo.getEdgeStats(t, otherPath)).count;
                 if (otherEdgeCount >= config.maxEdgesPerMemory)
                     continue;
-                const existing = sleep.prepare(`
-          SELECT id FROM memory_edges
-          WHERE (from_path = ? AND to_path = ?) OR (from_path = ? AND to_path = ?)
-        `).get(item.source_path, otherPath, otherPath, item.source_path);
-                if (existing)
+                if (await sleepRepo.edgeExists(t, item.source_path, otherPath))
                     continue;
                 const otherTags = itemTags.get(otherPath);
                 if (!otherTags)
@@ -167,11 +150,14 @@ export async function runLinkStep(t, config) {
                             entities_json: item.entities_json,
                         }, otherItem, sharedTags)
                         : 'related';
-                    sleep.prepare(`
-            INSERT INTO memory_edges
-            (from_path, to_path, relation, confidence, shared_tags, rationale, method, created_at, last_verified)
-            VALUES (?, ?, ?, ?, ?, ?, 'sleep-agent', datetime('now'), datetime('now'))
-          `).run(item.source_path, otherPath, relation, confidence, JSON.stringify(sharedTagsList), `Jaccard: ${(jaccardSimilarity(tags, otherTags) * 100).toFixed(1)}% + boosts on: ${sharedTagsList.slice(0, 5).join(', ')}${sharedTagsList.length > 5 ? '...' : ''}`);
+                    await sleepRepo.insertMemoryEdge(t, {
+                        from_path: item.source_path,
+                        to_path: otherPath,
+                        relation,
+                        confidence,
+                        shared_tags: JSON.stringify(sharedTagsList),
+                        rationale: `Jaccard: ${(jaccardSimilarity(tags, otherTags) * 100).toFixed(1)}% + boosts on: ${sharedTagsList.slice(0, 5).join(', ')}${sharedTagsList.length > 5 ? '...' : ''}`,
+                    });
                     created++;
                     itemEdgesCreated++;
                     if (created >= config.maxLinksPerRun)
@@ -183,11 +169,7 @@ export async function runLinkStep(t, config) {
         }
         // Phase 2: Retype 'related' edges to more-specific relations
         try {
-            const untyped = sleep.prepare(`
-        SELECT id, from_path, to_path FROM memory_edges
-        WHERE relation = 'related'
-        LIMIT ?
-      `).all(config.maxLinksPerRun);
+            const untyped = await sleepRepo.listEdgesByRelation(t, 'related', config.maxLinksPerRun);
             for (const edge of untyped) {
                 const fromItem = itemLookup.get(edge.from_path);
                 const toItem = itemLookup.get(edge.to_path);
@@ -198,7 +180,7 @@ export async function runLinkStep(t, config) {
                 const shared = new Set([...fromTags].filter(t => toTags.has(t)));
                 const newRelation = determineRelationType(fromItem, toItem, shared);
                 if (newRelation !== 'related') {
-                    sleep.prepare('UPDATE memory_edges SET relation = ? WHERE id = ?').run(newRelation, edge.id);
+                    await sleepRepo.updateEdgeRelation(t, edge.id, newRelation);
                     retyped++;
                 }
             }

package/dist/sleep/steps/link.js.map

@@ -1 +1 @@
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package/dist/sleep/steps/observe.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"observe.d.ts","sourceRoot":"","sources":["../../../src/sleep/steps/observe.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAsB,MAAM,6BAA6B,CAAC;AAUrF,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAIhD,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;CACnB;AA+DD,wBAAsB,cAAc,CAClC,CAAC,EAAE,aAAa,EAChB,MAAM,EAAE,WAAW,GAClB,OAAO,CAAC,aAAa,CAAC,CAiJxB"}
+{"version":3,"file":"observe.d.ts","sourceRoot":"","sources":["../../../src/sleep/steps/observe.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAsB,MAAM,6BAA6B,CAAC;AAUrF,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAIhD,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;CACnB;AA+DD,wBAAsB,cAAc,CAClC,CAAC,EAAE,aAAa,EAChB,MAAM,EAAE,WAAW,GAClB,OAAO,CAAC,aAAa,CAAC,CAgHxB"}

package/dist/sleep/steps/observe.js

@@ -6,7 +6,7 @@
  * Optionally runs contradiction detection: high confidence gap auto-resolves
  * via markFactSuperseded; close gap records the contradiction for review.
  */
-import { getDb } from '@kybernesis/brain-storage-sqlite';
+import { getStorage } from '../../storage.js';
 import { callClaude } from '../../claude-call.js';
 import { storeFact, ensureFactsTable, markFactSuperseded, getFactById, VALID_CATEGORIES, } from '../../fact-store.js';
 import { detectContradictions } from '../../fact-contradiction.js';
@@ -68,8 +68,6 @@ export async function runObserveStep(t, config) {
     if (!config.enableFactExtraction)
         return { count: 0, processed: 0 };
     await ensureFactsTable(t);
-    const timeline = getDb(t, 'timeline');
-    const entityDb = getDb(t, 'entityGraph');
     let factsCreated = 0;
     let processed = 0;
     let contradictionChecks = 0;
@@ -77,28 +75,7 @@ export async function runObserveStep(t, config) {
     const maxPerRun = config.maxFactsPerRun || 20;
     const maxContradictionChecks = config.maxContradictionChecksPerRun || 30;
     try {
-        const unprocessed = timeline.prepare(`
-      SELECT te.id, te.source_path, te.title, te.summary, te.timestamp,
-             te.entities_json, te.topics_json
-      FROM timeline_events te
-      WHERE te.type = 'conversation'
-        AND te.summary IS NOT NULL
-        AND LENGTH(te.summary) > 50
-        AND NOT EXISTS (
-          SELECT 1 FROM timeline_events obs
-          WHERE obs.source_path LIKE 'observation://' || REPLACE(te.source_path, 'channel://', '') || '/%'
-        )
-        AND NOT EXISTS (
-          SELECT 1 FROM facts f
-          WHERE f.source_path LIKE 'fact://' || REPLACE(te.source_path, 'channel://', '') || '/%'
-        )
-        AND NOT EXISTS (
-          SELECT 1 FROM facts f
-          WHERE f.source_path LIKE 'realtime://' || REPLACE(te.source_path, 'channel://', '') || '/%'
-        )
-      ORDER BY te.timestamp DESC
-      LIMIT ?
-    `).all(maxPerRun);
+        const unprocessed = await getStorage().domain.sleep.fetchUnprocessedConversations(t, maxPerRun);
         if (unprocessed.length === 0)
             return { count: 0, processed: 0 };
         for (const event of unprocessed) {
@@ -152,9 +129,9 @@ export async function runObserveStep(t, config) {
                                         else {
                                             try {
                                                 const entityName = (factInput.entities[0] || '').toLowerCase();
-                                                const entityRow = entityDb.prepare('SELECT id FROM entities WHERE LOWER(name) = ? OR LOWER(normalized_name) = ? LIMIT 1').get(entityName, entityName);
-                                                if (entityRow) {
-                                                    await createContradiction(t, entityRow.id, c.oldFactId, storedId, oldFact.content, factInput.content, c.rationale);
+                                                const entityId = await getStorage().repositories.sleep.findEntityIdByName(t, entityName);
+                                                if (entityId !== null) {
+                                                    await createContradiction(t, entityId, c.oldFactId, storedId, oldFact.content, factInput.content, c.rationale);
                                                 }
                                             }
                                             catch (err) {

package/dist/sleep/steps/observe.js.map

@@ -1 +1 @@
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package/dist/sleep/steps/reasoning.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"reasoning.d.ts","sourceRoot":"","sources":["../../../src/sleep/steps/reasoning.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,6BAA6B,CAAC;AASjE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAEhD,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;CACnB;AAsDD,wBAAsB,gBAAgB,CACpC,CAAC,EAAE,aAAa,EAChB,MAAM,EAAE,WAAW,GAClB,OAAO,CAAC,eAAe,CAAC,CAsH1B"}

package/dist/sleep/steps/reasoning.js

@@ -8,7 +8,7 @@
  * Marks existing insights stale before generating new ones; saves new
  * insights tagged 'inference' (deduction) or 'pattern' (induction).
  */
-import { getDb } from '@kybernesis/brain-storage-sqlite';
+import { getStorage } from '../../storage.js';
 import { callClaude } from '../../claude-call.js';
 import { getEntitiesForReasoning, markEntityReasoned, saveEntityInsight, markInsightsStale, getTypedRelationships, } from '../../entity-graph.js';
 import { getFactsForEntity } from '../../fact-store.js';
@@ -65,7 +65,6 @@ export async function runReasoningStep(t, config) {
         const entities = await getEntitiesForReasoning(t, maxPerRun);
         if (entities.length === 0)
             return { count: 0, processed: 0 };
-        const db = getDb(t, 'entityGraph');
         for (const entity of entities) {
             processed++;
             try {
@@ -120,15 +119,10 @@ export async function runReasoningStep(t, config) {
                 }
                 // Pass 2: Induction
                 try {
-                    const entityRow = db.prepare('SELECT * FROM entities WHERE id = ?').get(entity.id);
+                    const entityRow = await getStorage().repositories.sleep.fetchEntityStats(t, entity.id);
                     let coOccurrences = '';
                     try {
-                        const coOccurring = db.prepare(`
-              SELECT e2.name, er.strength FROM entity_relations er
-              JOIN entities e2 ON e2.id = CASE WHEN er.source_id = ? THEN er.target_id ELSE er.source_id END
-              WHERE (er.source_id = ? OR er.target_id = ?) AND er.strength > 1
-              ORDER BY er.strength DESC LIMIT 10
-            `).all(entity.id, entity.id, entity.id);
+                        const coOccurring = await getStorage().domain.sleep.fetchEntityCooccurrence(t, entity.id, 10);
                         if (coOccurring.length > 0) {
                             coOccurrences = 'Co-occurs with: ' + coOccurring.map(c => `${c.name} (${c.strength}x)`).join(', ');
                         }

package/dist/sleep/steps/reasoning.js.map

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package/dist/sleep/steps/summarize.d.ts.map

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