@knowledgine/core 0.2.1 → 0.3.0

package/dist/services/knowledge-service.js.map

@@ -1 +1 @@
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package/dist/storage/database.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"database.d.ts","sourceRoot":"","sources":["../../src/storage/database.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAM,gBAAgB,CAAC;AAKtC,MAAM,WAAW,qBAAqB;IACpC,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,wBAAgB,cAAc,CAC5B,MAAM,EAAE,MAAM,EACd,OAAO,GAAE,qBAA0B,GAClC,QAAQ,CAAC,QAAQ,CAwCnB;AAED;;;GAGG;AACH,wBAAsB,sBAAsB,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,GAAG,OAAO,CAAC,OAAO,CAAC,CASpF"}
+{"version":3,"file":"database.d.ts","sourceRoot":"","sources":["../../src/storage/database.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAM,gBAAgB,CAAC;AAyBtC,MAAM,WAAW,qBAAqB;IACpC,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,wBAAgB,cAAc,CAC5B,MAAM,EAAE,MAAM,EACd,OAAO,GAAE,qBAA0B,GAClC,QAAQ,CAAC,QAAQ,CA6DnB;AAED;;;GAGG;AACH,wBAAsB,sBAAsB,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,GAAG,OAAO,CAAC,OAAO,CAAC,CASpF"}

package/dist/storage/database.js

@@ -1,7 +1,28 @@
 import Database from "better-sqlite3";
-import { mkdirSync } from "fs";
-import { dirname } from "path";
+import { mkdirSync, existsSync } from "fs";
+import { dirname, join } from "path";
 import { DatabaseError } from "../errors.js";
+function detectPackageManager(cwd = process.cwd()) {
+    if (process.env.VOLTA_HOME)
+        return "volta";
+    if (existsSync(join(cwd, "pnpm-lock.yaml")))
+        return "pnpm";
+    if (existsSync(join(cwd, "yarn.lock")))
+        return "yarn";
+    return "npm";
+}
+function getRebuildCommand(pm) {
+    switch (pm) {
+        case "volta":
+            return "volta run npm rebuild better-sqlite3";
+        case "pnpm":
+            return "pnpm rebuild better-sqlite3";
+        case "yarn":
+            return "yarn rebuild";
+        default:
+            return "npm rebuild better-sqlite3";
+    }
+}
 export function createDatabase(dbPath, options = {}) {
     // Ensure directory exists (skip for :memory:)
     if (dbPath !== ":memory:") {
@@ -14,28 +35,47 @@ export function createDatabase(dbPath, options = {}) {
     catch (error) {
         const msg = error instanceof Error ? error.message : String(error);
         if (/MODULE_NOT_FOUND|DLOPEN|NODE_MODULE_VERSION|NAPI/i.test(msg)) {
+            const pm = detectPackageManager();
+            const rebuildCmd = getRebuildCommand(pm);
             throw new DatabaseError(`initialization - Native module error detected.\n\n` +
                 `Resolution:\n` +
-                `  1. npm rebuild better-sqlite3\n` +
-                `  2. Or: rm -rf node_modules && npm install\n` +
+                `  1. ${rebuildCmd}\n` +
+                `  2. Or: rm -rf node_modules && ${pm === "pnpm" ? "pnpm install" : pm === "yarn" ? "yarn install" : "npm install"}\n` +
                 `  3. Current Node.js: ${process.version}`, error, { dbPath });
         }
         throw new DatabaseError("initialization", error, { dbPath });
     }
     db.pragma("journal_mode = WAL");
     db.pragma("foreign_keys = ON");
-    // Legacy support: load sqlite-vec synchronously if enableVec is explicitly true
-    // New code should use loadSqliteVecExtension() instead
+    // Load sqlite-vec if requested
+    let vec0Loaded = false;
     if (options.enableVec === true) {
         try {
             // eslint-disable-next-line @typescript-eslint/no-require-imports
             const sqliteVec = require("sqlite-vec");
             sqliteVec.load(db);
+            vec0Loaded = true;
         }
         catch {
             // sqlite-vec not available — graceful degradation
         }
     }
+    // Drop vec0-dependent triggers if vec0 is not loaded to prevent cascade errors
+    if (!vec0Loaded) {
+        try {
+            const trigger = db
+                .prepare("SELECT name FROM sqlite_master WHERE type='trigger' AND name='note_embeddings_ad'")
+                .get();
+            if (trigger) {
+                db.exec("DROP TRIGGER IF EXISTS note_embeddings_ad");
+                db.exec("DROP TRIGGER IF EXISTS note_embeddings_au");
+                db.exec("DROP TRIGGER IF EXISTS note_embeddings_ai");
+            }
+        }
+        catch {
+            // DB may not have the table yet — ignore
+        }
+    }
     return db;
 }
 /**

package/dist/storage/database.js.map

@@ -1 +1 @@
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package/dist/storage/knowledge-repository.d.ts

@@ -9,6 +9,10 @@ export interface KnowledgeNote {
     created_at: string;
     updated_at: string | null;
     content_hash: string | null;
+    valid_from: string | null;
+    deprecated: 0 | 1 | null;
+    extracted_at: string | null;
+    code_location_json: string | null;
 }
 export interface ExtractedPatternRow {
     id: number;
@@ -69,6 +73,11 @@ export declare class KnowledgeRepository {
         totalPairs: number;
         patternsByType: Record<string, number>;
     };
+    /**
+     * コードファイルパスで code_location_json を持つノートを検索する
+     * path パラメータを含む code_location_json が NULL でないノートを返す
+     */
+    searchByCodeLocation(path: string): KnowledgeNote[];
     /**
      * ノートの埋め込みベクトルを保存する（upsert）
      */
@@ -84,7 +93,7 @@ export declare class KnowledgeRepository {
     /**
      * FTS5 rank付きでノートを検索する
      */
-    searchNotesWithRank(query: string, limit?: number): Array<{
+    searchNotesWithRank(query: string, limit?: number, includeDeprecated?: boolean): Array<{
         note: KnowledgeNote;
         rank: number;
     }>;
@@ -113,6 +122,45 @@ export declare class KnowledgeRepository {
      * 指定IDリストのノートを一括削除する
      */
     deleteNotesByIds(ids: number[]): number;
+    /**
+     * ノートの extracted_at タイムスタンプを更新する
+     */
+    updateExtractedAt(noteId: number): void;
+    /**
+     * sourceUri プレフィックスでノートを取得する
+     * file_path が sourceUri として使われている（normalizer.ts の仕様）
+     */
+    getNotesBySourceUriPrefix(prefix: string): KnowledgeNote[];
+    /**
+     * 既存リンクチェック後に note_links へ INSERT する（冪等）
+     * 同じ source/target ペアが既に存在する場合は false を返す
+     */
+    saveNoteLinkIfNotExists(sourceNoteId: number, targetNoteId: number, linkType: string, similarity?: number): boolean;
+    /**
+     * 指定ノートに関するリンクをすべて取得する（source または target）
+     */
+    getLinksForNote(noteId: number): Array<{
+        id: number;
+        sourceNoteId: number;
+        targetNoteId: number;
+        linkType: string;
+        similarity: number | null;
+        createdAt: string;
+    }>;
+    /**
+     * サジェスト結果へのフィードバックを保存する
+     */
+    saveSuggestFeedback(noteId: number, query: string, isUseful: boolean, context?: string): number;
+    /**
+     * 特定ノートのサジェストフィードバック一覧を取得する（新しい順）
+     */
+    getSuggestFeedbackForNote(noteId: number): Array<{
+        id: number;
+        query: string;
+        isUseful: boolean;
+        context: string | null;
+        createdAt: string;
+    }>;
     close(): void;
 }
 //# sourceMappingURL=knowledge-repository.d.ts.map

package/dist/storage/knowledge-repository.d.ts.map

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package/dist/storage/knowledge-repository.js

@@ -28,6 +28,7 @@ export class KnowledgeRepository {
             const frontmatterJson = data.frontmatter && Object.keys(data.frontmatter).length > 0
                 ? JSON.stringify(data.frontmatter)
                 : null;
+            const codeLocationJson = data.codeLocationJson ?? null;
             if (existing) {
                 // Skip update if content hasn't changed
                 if (existing.content_hash === contentHash) {
@@ -36,20 +37,20 @@ export class KnowledgeRepository {
                 const stmt = this.db.prepare(`
           UPDATE knowledge_notes
           SET title = ?, content = ?, frontmatter_json = ?,
-              updated_at = ?, content_hash = ?
+              updated_at = ?, content_hash = ?, code_location_json = ?
           WHERE id = ?
         `);
-                stmt.run(data.title, data.content, frontmatterJson, now, contentHash, existing.id);
+                stmt.run(data.title, data.content, frontmatterJson, now, contentHash, codeLocationJson, existing.id);
                 return existing.id;
             }
             else {
                 const stmt = this.db.prepare(`
           INSERT INTO knowledge_notes (
             file_path, title, content, frontmatter_json,
-            created_at, updated_at, content_hash
-          ) VALUES (?, ?, ?, ?, ?, ?, ?)
+            created_at, updated_at, content_hash, code_location_json
+          ) VALUES (?, ?, ?, ?, ?, ?, ?, ?)
         `);
-                const info = stmt.run(data.filePath, data.title, data.content, frontmatterJson, data.createdAt || now, now, contentHash);
+                const info = stmt.run(data.filePath, data.title, data.content, frontmatterJson, data.createdAt || now, now, contentHash, codeLocationJson);
                 return Number(info.lastInsertRowid);
             }
         }
@@ -239,6 +240,19 @@ export class KnowledgeRepository {
         }
         return { totalNotes, totalPatterns, totalLinks, totalPairs, patternsByType };
     }
+    /**
+     * コードファイルパスで code_location_json を持つノートを検索する
+     * path パラメータを含む code_location_json が NULL でないノートを返す
+     */
+    searchByCodeLocation(path) {
+        const stmt = this.db.prepare(`
+      SELECT * FROM knowledge_notes
+      WHERE code_location_json IS NOT NULL
+        AND code_location_json LIKE ?
+      ORDER BY created_at DESC
+    `);
+        return stmt.all(`%${path}%`);
+    }
     /**
      * ノートの埋め込みベクトルを保存する（upsert）
      */
@@ -301,13 +315,15 @@ export class KnowledgeRepository {
     /**
      * FTS5 rank付きでノートを検索する
      */
-    searchNotesWithRank(query, limit = 50) {
+    searchNotesWithRank(query, limit = 50, includeDeprecated = false) {
+        const deprecatedFilter = includeDeprecated ? "" : "AND n.deprecated = 0";
         try {
             const stmt = this.db.prepare(`
         SELECT n.*, fts.rank
         FROM knowledge_notes n
         JOIN knowledge_notes_fts fts ON n.id = fts.rowid
         WHERE knowledge_notes_fts MATCH ?
+        ${deprecatedFilter}
         ORDER BY rank
         LIMIT ?
       `);
@@ -316,7 +332,8 @@ export class KnowledgeRepository {
         }
         catch {
             // FTS5失敗時はLIKEフォールバック（不正なクエリ構文への耐性）
-            const fallbackStmt = this.db.prepare(`SELECT n.* FROM knowledge_notes n WHERE n.title LIKE ? OR n.content LIKE ? LIMIT ?`);
+            const deprecatedClause = includeDeprecated ? "" : "AND n.deprecated = 0";
+            const fallbackStmt = this.db.prepare(`SELECT n.* FROM knowledge_notes n WHERE (n.title LIKE ? OR n.content LIKE ?) ${deprecatedClause} LIMIT ?`);
             const fallbackRows = fallbackStmt.all(`%${query}%`, `%${query}%`, limit);
             return fallbackRows.map((row) => ({ note: row, rank: 0 }));
         }
@@ -376,6 +393,75 @@ export class KnowledgeRepository {
         const info = stmt.run(...ids);
         return info.changes;
     }
+    /**
+     * ノートの extracted_at タイムスタンプを更新する
+     */
+    updateExtractedAt(noteId) {
+        const now = new Date().toISOString();
+        this.db.prepare("UPDATE knowledge_notes SET extracted_at = ? WHERE id = ?").run(now, noteId);
+    }
+    /**
+     * sourceUri プレフィックスでノートを取得する
+     * file_path が sourceUri として使われている（normalizer.ts の仕様）
+     */
+    getNotesBySourceUriPrefix(prefix) {
+        const stmt = this.db.prepare("SELECT * FROM knowledge_notes WHERE file_path LIKE ? ORDER BY created_at ASC");
+        return stmt.all(`${prefix}%`);
+    }
+    /**
+     * 既存リンクチェック後に note_links へ INSERT する（冪等）
+     * 同じ source/target ペアが既に存在する場合は false を返す
+     */
+    saveNoteLinkIfNotExists(sourceNoteId, targetNoteId, linkType, similarity) {
+        const existing = this.db
+            .prepare("SELECT id FROM note_links WHERE source_note_id = ? AND target_note_id = ?")
+            .get(sourceNoteId, targetNoteId);
+        if (existing)
+            return false;
+        const now = new Date().toISOString();
+        this.db
+            .prepare("INSERT INTO note_links (source_note_id, target_note_id, link_type, similarity, created_at) VALUES (?, ?, ?, ?, ?)")
+            .run(sourceNoteId, targetNoteId, linkType, similarity ?? null, now);
+        return true;
+    }
+    /**
+     * 指定ノートに関するリンクをすべて取得する（source または target）
+     */
+    getLinksForNote(noteId) {
+        const stmt = this.db.prepare(`
+      SELECT id, source_note_id as sourceNoteId, target_note_id as targetNoteId,
+             link_type as linkType, similarity, created_at as createdAt
+      FROM note_links
+      WHERE source_note_id = ? OR target_note_id = ?
+      ORDER BY created_at DESC
+    `);
+        return stmt.all(noteId, noteId);
+    }
+    /**
+     * サジェスト結果へのフィードバックを保存する
+     */
+    saveSuggestFeedback(noteId, query, isUseful, context) {
+        const now = new Date().toISOString();
+        const stmt = this.db.prepare(`
+      INSERT INTO suggest_feedback (note_id, query, is_useful, context, created_at)
+      VALUES (?, ?, ?, ?, ?)
+    `);
+        const info = stmt.run(noteId, query, isUseful ? 1 : 0, context ?? null, now);
+        return Number(info.lastInsertRowid);
+    }
+    /**
+     * 特定ノートのサジェストフィードバック一覧を取得する（新しい順）
+     */
+    getSuggestFeedbackForNote(noteId) {
+        const stmt = this.db.prepare(`
+      SELECT id, query, is_useful as isUseful, context, created_at as createdAt
+      FROM suggest_feedback
+      WHERE note_id = ?
+      ORDER BY id DESC
+    `);
+        const rows = stmt.all(noteId);
+        return rows.map((row) => ({ ...row, isUseful: row.isUseful === 1 }));
+    }
     close() {
         this.db.close();
     }

package/dist/storage/knowledge-repository.js.map

@@ -1 +1 @@
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package/dist/storage/migrations/007_spec_alignment.d.ts

@@ -0,0 +1,3 @@
+import type { Migration } from "../migrator.js";
+export declare const migration007: Migration;
+//# sourceMappingURL=007_spec_alignment.d.ts.map

package/dist/storage/migrations/007_spec_alignment.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"007_spec_alignment.d.ts","sourceRoot":"","sources":["../../../src/storage/migrations/007_spec_alignment.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AA6GhD,eAAO,MAAM,YAAY,EAAE,SAS1B,CAAC"}

package/dist/storage/migrations/007_spec_alignment.js

@@ -0,0 +1,116 @@
+const SPEC_ALIGNMENT_SQL = `
+-- ① bi-temporal カラム改名 (relations)
+ALTER TABLE relations RENAME COLUMN valid_from TO valid_at;
+ALTER TABLE relations RENAME COLUMN valid_to TO invalid_at;
+ALTER TABLE relations RENAME COLUMN superseded_at TO superseded_by;
+ALTER TABLE relations ADD COLUMN expired_at TEXT;
+ALTER TABLE relations ADD COLUMN source_event_id TEXT;
+
+-- bi-temporal カラム改名 (observations)
+ALTER TABLE observations RENAME COLUMN valid_from TO valid_at;
+ALTER TABLE observations RENAME COLUMN valid_to TO invalid_at;
+ALTER TABLE observations RENAME COLUMN superseded_at TO superseded_by;
+ALTER TABLE observations ADD COLUMN expired_at TEXT;
+ALTER TABLE observations ADD COLUMN source_event_id TEXT;
+
+-- VIEW 再作成
+DROP VIEW IF EXISTS active_relations;
+DROP VIEW IF EXISTS active_observations;
+CREATE VIEW active_relations AS
+  SELECT * FROM relations WHERE (invalid_at IS NULL) AND (expired_at IS NULL);
+CREATE VIEW active_observations AS
+  SELECT * FROM observations WHERE (invalid_at IS NULL) AND (expired_at IS NULL);
+
+-- インデックス再作成
+DROP INDEX IF EXISTS idx_relations_valid_to;
+DROP INDEX IF EXISTS idx_relations_superseded;
+DROP INDEX IF EXISTS idx_observations_valid_to;
+DROP INDEX IF EXISTS idx_observations_superseded;
+CREATE INDEX idx_relations_invalid_at ON relations(invalid_at);
+CREATE INDEX idx_relations_superseded_by ON relations(superseded_by);
+CREATE INDEX idx_observations_invalid_at ON observations(invalid_at);
+CREATE INDEX idx_observations_superseded_by ON observations(superseded_by);
+
+-- ② memory_entries scope
+ALTER TABLE memory_entries ADD COLUMN scope TEXT DEFAULT 'project';
+
+-- ③ provenance_links (新規)
+CREATE TABLE provenance_links (
+  id TEXT PRIMARY KEY,
+  from_entity_uri TEXT NOT NULL,
+  to_entity_uri TEXT NOT NULL,
+  relation TEXT NOT NULL,
+  created_at TEXT NOT NULL
+);
+
+-- ④ provenance テーブル再構築
+CREATE TABLE provenance_new (
+  id TEXT PRIMARY KEY,
+  entity_uri TEXT NOT NULL,
+  activity_type TEXT NOT NULL,
+  agent TEXT,
+  source_uri TEXT,
+  generated_at TEXT NOT NULL,
+  metadata TEXT
+);
+INSERT INTO provenance_new (id, entity_uri, activity_type, agent, source_uri, generated_at, metadata)
+  SELECT CAST(id AS TEXT), entity_uri, activity_type, agent,
+         COALESCE(input_uris, ''), started_at, metadata_json
+  FROM provenance;
+DROP TABLE provenance;
+ALTER TABLE provenance_new RENAME TO provenance;
+CREATE INDEX idx_provenance_entity ON provenance(entity_uri);
+CREATE INDEX idx_provenance_activity ON provenance(activity_type);
+
+-- ⑤ file_timeline 再構築
+CREATE TABLE file_timeline_new (
+  file_path TEXT NOT NULL,
+  event_id TEXT NOT NULL,
+  changed_at TEXT NOT NULL,
+  change_type TEXT NOT NULL
+);
+INSERT INTO file_timeline_new (file_path, event_id, changed_at, change_type)
+  SELECT file_path, CAST(COALESCE(event_id, '') AS TEXT), occurred_at, event_type
+  FROM file_timeline;
+DROP TABLE file_timeline;
+ALTER TABLE file_timeline_new RENAME TO file_timeline;
+CREATE INDEX idx_file_timeline_path ON file_timeline(file_path);
+CREATE INDEX idx_file_timeline_changed ON file_timeline(changed_at);
+
+-- ⑥ snapshots 再構築
+CREATE TABLE snapshots_new (
+  id TEXT PRIMARY KEY,
+  snapshot_at TEXT NOT NULL,
+  entity_count INTEGER,
+  event_count INTEGER,
+  metadata TEXT
+);
+INSERT INTO snapshots_new (id, snapshot_at, entity_count, event_count, metadata)
+  SELECT CAST(id AS TEXT), snapshot_at, entity_count, event_count, metadata_json
+  FROM snapshots;
+DROP TABLE snapshots;
+ALTER TABLE snapshots_new RENAME TO snapshots;
+`;
+const SPEC_ALIGNMENT_DOWN_SQL = `
+-- provenance_links 削除
+DROP TABLE IF EXISTS provenance_links;
+
+-- VIEWの再作成（元の条件）
+DROP VIEW IF EXISTS active_relations;
+DROP VIEW IF EXISTS active_observations;
+CREATE VIEW active_relations AS
+  SELECT * FROM relations WHERE invalid_at IS NULL AND superseded_by IS NULL;
+CREATE VIEW active_observations AS
+  SELECT * FROM observations WHERE invalid_at IS NULL AND superseded_by IS NULL;
+`;
+export const migration007 = {
+    version: 9,
+    name: "spec_alignment",
+    up: (db) => {
+        db.exec(SPEC_ALIGNMENT_SQL);
+    },
+    down: (db) => {
+        db.exec(SPEC_ALIGNMENT_DOWN_SQL);
+    },
+};
+//# sourceMappingURL=007_spec_alignment.js.map

package/dist/storage/migrations/007_spec_alignment.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"007_spec_alignment.js","sourceRoot":"","sources":["../../../src/storage/migrations/007_spec_alignment.ts"],"names":[],"mappings":"AAEA,MAAM,kBAAkB,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA4F1B,CAAC;AAEF,MAAM,uBAAuB,GAAG;;;;;;;;;;;CAW/B,CAAC;AAEF,MAAM,CAAC,MAAM,YAAY,GAAc;IACrC,OAAO,EAAE,CAAC;IACV,IAAI,EAAE,gBAAgB;IACtB,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE;QACT,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC;IAC9B,CAAC;IACD,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE;QACX,EAAE,CAAC,IAAI,CAAC,uBAAuB,CAAC,CAAC;IACnC,CAAC;CACF,CAAC"}

package/dist/storage/migrations/008_knowledge_versioning.d.ts

@@ -0,0 +1,15 @@
+import type { Migration } from "../migrator.js";
+/**
+ * Migration 008: Knowledge Versioning
+ *
+ * Adds versioning and deprecation support to knowledge tables:
+ * - knowledge_notes: version tracking, supersedes (FK), valid_from, deprecated flag
+ * - extracted_patterns: deprecated flag
+ * - problem_solution_pairs: version tracking, supersedes, deprecated flag
+ *
+ * Naming note:
+ * - knowledge_notes uses `valid_from` (start point) vs graph's `valid_at` (point in time)
+ * - knowledge_notes uses `supersedes` (INTEGER FK) vs graph's `superseded_by` (TEXT, legacy)
+ */
+export declare const migration008: Migration;
+//# sourceMappingURL=008_knowledge_versioning.d.ts.map

package/dist/storage/migrations/008_knowledge_versioning.d.ts.map

@@ -0,0 +1 @@
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