@knowledgine/core 0.0.1 → 0.1.0

package/dist/storage/knowledge-repository.js

@@ -237,6 +237,105 @@ export class KnowledgeRepository {
         }
         return { totalNotes, totalPatterns, totalLinks, totalPairs, patternsByType };
     }
+    /**
+     * ノートの埋め込みベクトルを保存する（upsert）
+     */
+    saveEmbedding(noteId, embedding, modelName) {
+        try {
+            const now = new Date().toISOString();
+            const embBuf = Buffer.from(embedding.buffer);
+            // note_embeddings テーブルに upsert
+            const upsertStmt = this.db.prepare(`
+        INSERT INTO note_embeddings (note_id, embedding, model_name, dimensions, created_at, updated_at)
+        VALUES (?, ?, ?, ?, ?, ?)
+        ON CONFLICT(note_id) DO UPDATE SET
+          embedding = excluded.embedding,
+          model_name = excluded.model_name,
+          dimensions = excluded.dimensions,
+          updated_at = excluded.updated_at
+      `);
+            upsertStmt.run(noteId, embBuf, modelName, embedding.length, now, now);
+            // note_embeddings_vec (vec0) が存在する場合は手動で同期
+            // vec0 は ON CONFLICT をサポートしないため DELETE + INSERT を使う
+            try {
+                this.db.prepare("DELETE FROM note_embeddings_vec WHERE note_id = ?").run(noteId);
+                this.db
+                    .prepare("INSERT INTO note_embeddings_vec(note_id, embedding) VALUES (?, ?)")
+                    .run(noteId, embBuf);
+            }
+            catch {
+                // note_embeddings_vec が存在しない場合は無視（graceful degradation）
+            }
+        }
+        catch (error) {
+            if (error instanceof DatabaseError)
+                throw error;
+            throw new DatabaseError("saveEmbedding", error, { noteId });
+        }
+    }
+    /**
+     * ベクトル類似度検索（note_embeddings_vec を使用）
+     * sqlite-vec が利用できない場合は空配列を返す
+     */
+    searchByVector(embedding, limit = 10) {
+        try {
+            const buf = Buffer.from(embedding.buffer);
+            const stmt = this.db.prepare(`
+        SELECT note_id, distance
+        FROM note_embeddings_vec
+        WHERE embedding MATCH ?
+        ORDER BY distance
+        LIMIT ?
+      `);
+            return stmt.all(buf, limit);
+        }
+        catch {
+            // vec0テーブルが存在しない場合（sqlite-vec未ロード）は空を返す
+            return [];
+        }
+    }
+    /**
+     * FTS5 rank付きでノートを検索する
+     */
+    searchNotesWithRank(query, limit = 50) {
+        try {
+            const stmt = this.db.prepare(`
+        SELECT n.*, fts.rank
+        FROM knowledge_notes n
+        JOIN knowledge_notes_fts fts ON n.id = fts.rowid
+        WHERE knowledge_notes_fts MATCH ?
+        ORDER BY rank
+        LIMIT ?
+      `);
+            const rows = stmt.all(query, limit);
+            return rows.map(({ rank, ...note }) => ({ note: note, rank }));
+        }
+        catch (error) {
+            throw new FTSIndexError("search", error, { query, limit });
+        }
+    }
+    /**
+     * 埋め込みがまだ生成されていないノートを取得する
+     */
+    getNotesWithoutEmbeddings() {
+        const stmt = this.db.prepare(`
+      SELECT n.* FROM knowledge_notes n
+      WHERE NOT EXISTS (SELECT 1 FROM note_embeddings e WHERE e.note_id = n.id)
+    `);
+        return stmt.all();
+    }
+    /**
+     * content_hashが変更されて埋め込みが古くなったノートを取得する
+     */
+    getNotesWithStaleEmbeddings() {
+        // note_embeddingsのupdated_atとknowledge_notesのupdated_atを比較
+        const stmt = this.db.prepare(`
+      SELECT n.* FROM knowledge_notes n
+      JOIN note_embeddings e ON e.note_id = n.id
+      WHERE n.updated_at IS NOT NULL AND n.updated_at > e.created_at
+    `);
+        return stmt.all();
+    }
     close() {
         this.db.close();
     }

package/dist/storage/knowledge-repository.js.map

@@ -1 +1 @@
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package/dist/storage/migrations/003_vector_embeddings.d.ts

@@ -0,0 +1,3 @@
+import type { Migration } from "../migrator.js";
+export declare const migration003: Migration;
+//# sourceMappingURL=003_vector_embeddings.d.ts.map

package/dist/storage/migrations/003_vector_embeddings.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"003_vector_embeddings.d.ts","sourceRoot":"","sources":["../../../src/storage/migrations/003_vector_embeddings.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AA6BhD,eAAO,MAAM,YAAY,EAAE,SAwB1B,CAAC"}

package/dist/storage/migrations/003_vector_embeddings.js

@@ -0,0 +1,50 @@
+const VECTOR_EMBEDDINGS_SQL = `
+CREATE TABLE note_embeddings (
+  note_id INTEGER PRIMARY KEY,
+  embedding BLOB NOT NULL,
+  model_name TEXT NOT NULL DEFAULT 'all-MiniLM-L6-v2',
+  dimensions INTEGER NOT NULL DEFAULT 384,
+  created_at TEXT NOT NULL,
+  updated_at TEXT,
+  FOREIGN KEY (note_id) REFERENCES knowledge_notes(id) ON DELETE CASCADE
+);
+
+CREATE INDEX idx_note_embeddings_model ON note_embeddings(model_name);
+`;
+const VECTOR_TABLE_SQL = `
+CREATE VIRTUAL TABLE note_embeddings_vec USING vec0(
+  note_id INTEGER PRIMARY KEY,
+  embedding FLOAT[384]
+);
+`;
+const SYNC_TRIGGERS_SQL = `
+CREATE TRIGGER note_embeddings_ad AFTER DELETE ON note_embeddings BEGIN
+  DELETE FROM note_embeddings_vec WHERE note_id = old.note_id;
+END;
+`;
+export const migration003 = {
+    version: 3,
+    name: "vector_embeddings",
+    up: (db) => {
+        // Always create the regular table
+        db.exec(VECTOR_EMBEDDINGS_SQL);
+        // Try to create vec0 virtual table (requires sqlite-vec extension)
+        try {
+            db.exec(VECTOR_TABLE_SQL);
+            db.exec(SYNC_TRIGGERS_SQL);
+        }
+        catch {
+            // sqlite-vec not available — graceful degradation, keyword-only search still works
+        }
+    },
+    down: (db) => {
+        db.exec(`
+      DROP TRIGGER IF EXISTS note_embeddings_ad;
+      DROP TRIGGER IF EXISTS note_embeddings_au;
+      DROP TRIGGER IF EXISTS note_embeddings_ai;
+      DROP TABLE IF EXISTS note_embeddings_vec;
+      DROP TABLE IF EXISTS note_embeddings;
+    `);
+    },
+};
+//# sourceMappingURL=003_vector_embeddings.js.map

package/dist/storage/migrations/003_vector_embeddings.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"003_vector_embeddings.js","sourceRoot":"","sources":["../../../src/storage/migrations/003_vector_embeddings.ts"],"names":[],"mappings":"AAEA,MAAM,qBAAqB,GAAG;;;;;;;;;;;;CAY7B,CAAC;AAEF,MAAM,gBAAgB,GAAG;;;;;CAKxB,CAAC;AAEF,MAAM,iBAAiB,GAAG;;;;CAIzB,CAAC;AAEF,MAAM,CAAC,MAAM,YAAY,GAAc;IACrC,OAAO,EAAE,CAAC;IACV,IAAI,EAAE,mBAAmB;IACzB,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE;QACT,kCAAkC;QAClC,EAAE,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC;QAE/B,mEAAmE;QACnE,IAAI,CAAC;YACH,EAAE,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;YAC1B,EAAE,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC;QAC7B,CAAC;QAAC,MAAM,CAAC;YACP,mFAAmF;QACrF,CAAC;IACH,CAAC;IACD,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE;QACX,EAAE,CAAC,IAAI,CAAC;;;;;;KAMP,CAAC,CAAC;IACL,CAAC;CACF,CAAC"}

package/dist/storage/migrations/004_knowledge_graph.d.ts

@@ -0,0 +1,3 @@
+import type { Migration } from "../migrator.js";
+export declare const migration004: Migration;
+//# sourceMappingURL=004_knowledge_graph.d.ts.map

package/dist/storage/migrations/004_knowledge_graph.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"004_knowledge_graph.d.ts","sourceRoot":"","sources":["../../../src/storage/migrations/004_knowledge_graph.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAyFhD,eAAO,MAAM,YAAY,EAAE,SAkB1B,CAAC"}

package/dist/storage/migrations/004_knowledge_graph.js

@@ -0,0 +1,106 @@
+const KNOWLEDGE_GRAPH_SQL = `
+CREATE TABLE entities (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  name TEXT NOT NULL,
+  entity_type TEXT NOT NULL CHECK(entity_type IN ('person','project','technology','concept','tool','organization','event')),
+  description TEXT,
+  created_at TEXT NOT NULL,
+  updated_at TEXT,
+  metadata_json TEXT,
+  UNIQUE(name, entity_type)
+);
+
+CREATE INDEX idx_entities_name ON entities(name);
+CREATE INDEX idx_entities_type ON entities(entity_type);
+
+CREATE VIRTUAL TABLE entities_fts USING fts5(
+  name, description,
+  content='entities', content_rowid='id',
+  tokenize='trigram'
+);
+
+CREATE TRIGGER entities_ai AFTER INSERT ON entities BEGIN
+  INSERT INTO entities_fts(rowid, name, description)
+  VALUES (new.id, new.name, COALESCE(new.description, ''));
+END;
+
+CREATE TRIGGER entities_ad AFTER DELETE ON entities BEGIN
+  INSERT INTO entities_fts(entities_fts, rowid, name, description)
+  VALUES ('delete', old.id, old.name, COALESCE(old.description, ''));
+END;
+
+CREATE TRIGGER entities_au AFTER UPDATE ON entities BEGIN
+  INSERT INTO entities_fts(entities_fts, rowid, name, description)
+  VALUES ('delete', old.id, old.name, COALESCE(old.description, ''));
+  INSERT INTO entities_fts(rowid, name, description)
+  VALUES (new.id, new.name, COALESCE(new.description, ''));
+END;
+
+CREATE TABLE relations (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  from_entity_id INTEGER NOT NULL,
+  to_entity_id INTEGER NOT NULL,
+  relation_type TEXT NOT NULL CHECK(relation_type IN (
+    'uses','implements','depends_on','related_to','created_by',
+    'works_on','solves','references','part_of','similar_to'
+  )),
+  strength REAL NOT NULL DEFAULT 1.0,
+  description TEXT,
+  created_at TEXT NOT NULL,
+  FOREIGN KEY (from_entity_id) REFERENCES entities(id) ON DELETE CASCADE,
+  FOREIGN KEY (to_entity_id) REFERENCES entities(id) ON DELETE CASCADE,
+  UNIQUE(from_entity_id, to_entity_id, relation_type)
+);
+
+CREATE INDEX idx_relations_from ON relations(from_entity_id);
+CREATE INDEX idx_relations_to ON relations(to_entity_id);
+CREATE INDEX idx_relations_type ON relations(relation_type);
+
+CREATE TABLE observations (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  entity_id INTEGER NOT NULL,
+  content TEXT NOT NULL,
+  observation_type TEXT NOT NULL CHECK(observation_type IN ('fact','insight','learning','decision','performance')),
+  confidence REAL,
+  source_note_id INTEGER,
+  source_pattern_id INTEGER,
+  created_at TEXT NOT NULL,
+  metadata_json TEXT,
+  FOREIGN KEY (entity_id) REFERENCES entities(id) ON DELETE CASCADE,
+  FOREIGN KEY (source_note_id) REFERENCES knowledge_notes(id) ON DELETE SET NULL,
+  FOREIGN KEY (source_pattern_id) REFERENCES extracted_patterns(id) ON DELETE SET NULL
+);
+
+CREATE INDEX idx_observations_entity ON observations(entity_id);
+CREATE INDEX idx_observations_type ON observations(observation_type);
+
+CREATE TABLE entity_note_links (
+  entity_id INTEGER NOT NULL,
+  note_id INTEGER NOT NULL,
+  PRIMARY KEY (entity_id, note_id),
+  FOREIGN KEY (entity_id) REFERENCES entities(id) ON DELETE CASCADE,
+  FOREIGN KEY (note_id) REFERENCES knowledge_notes(id) ON DELETE CASCADE
+);
+
+CREATE INDEX idx_entity_note_links_note ON entity_note_links(note_id);
+`;
+export const migration004 = {
+    version: 4,
+    name: "knowledge_graph",
+    up: (db) => {
+        db.exec(KNOWLEDGE_GRAPH_SQL);
+    },
+    down: (db) => {
+        db.exec(`
+      DROP TABLE IF EXISTS entity_note_links;
+      DROP TABLE IF EXISTS observations;
+      DROP TABLE IF EXISTS relations;
+      DROP TRIGGER IF EXISTS entities_au;
+      DROP TRIGGER IF EXISTS entities_ad;
+      DROP TRIGGER IF EXISTS entities_ai;
+      DROP TABLE IF EXISTS entities_fts;
+      DROP TABLE IF EXISTS entities;
+    `);
+    },
+};
+//# sourceMappingURL=004_knowledge_graph.js.map

package/dist/storage/migrations/004_knowledge_graph.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"004_knowledge_graph.js","sourceRoot":"","sources":["../../../src/storage/migrations/004_knowledge_graph.ts"],"names":[],"mappings":"AAEA,MAAM,mBAAmB,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAqF3B,CAAC;AAEF,MAAM,CAAC,MAAM,YAAY,GAAc;IACrC,OAAO,EAAE,CAAC;IACV,IAAI,EAAE,iBAAiB;IACvB,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE;QACT,EAAE,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAC;IAC/B,CAAC;IACD,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE;QACX,EAAE,CAAC,IAAI,CAAC;;;;;;;;;KASP,CAAC,CAAC;IACL,CAAC;CACF,CAAC"}

package/dist/types.d.ts

@@ -51,6 +51,20 @@ export interface SearchResult {
     score: number;
     matchReason: string[];
 }
+/** Semantic search options */
+export interface SemanticSearchOptions {
+    query: string;
+    limit?: number;
+    mode?: "keyword" | "semantic" | "hybrid";
+}
+/** Semantic search result */
+export interface SemanticSearchResult {
+    noteId: number;
+    filePath: string;
+    title: string;
+    score: number;
+    matchReason: string[];
+}
 export type EntityType = "person" | "project" | "technology" | "concept" | "tool" | "organization" | "event";
 export type RelationType = "uses" | "implements" | "depends_on" | "related_to" | "created_by" | "works_on" | "solves" | "references" | "part_of" | "similar_to";
 export type ObservationType = "fact" | "insight" | "learning" | "decision" | "performance";

package/dist/types.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@knowledgine/core",
-  "version": "0.0.1",
+  "version": "0.1.0",
   "type": "module",
   "main": "./dist/index.js",
   "types": "./dist/index.d.ts",
@@ -11,7 +11,8 @@
     }
   },
   "files": [
-    "dist"
+    "dist",
+    "models"
   ],
   "description": "Core library for extracting structured knowledge from markdown files",
   "keywords": [
@@ -20,7 +21,11 @@
     "mcp",
     "ai",
     "markdown",
-    "fts5"
+    "fts5",
+    "vector-search",
+    "semantic-search",
+    "onnx",
+    "sqlite-vec"
   ],
   "license": "MIT",
   "repository": {
@@ -40,6 +45,8 @@
   },
   "dependencies": {
     "better-sqlite3": "^11.0.0",
+    "onnxruntime-node": "~1.20.0",
+    "sqlite-vec": "^0.1.6",
     "yaml": "^2.7.0"
   },
   "devDependencies": {