@knowledgine/cli 0.6.1 → 0.6.3

package/dist/CLAUDE.md

@@ -0,0 +1,7 @@
+<claude-mem-context>
+# Recent Activity
+
+<!-- This section is auto-generated by claude-mem. Edit content outside the tags. -->
+
+*No recent activity*
+</claude-mem-context>

package/dist/commands/benchmark.d.ts

@@ -0,0 +1,6 @@
+export interface BenchmarkOptions {
+    path?: string;
+    semantic?: boolean;
+}
+export declare function benchmarkCommand(options: BenchmarkOptions): Promise<void>;
+//# sourceMappingURL=benchmark.d.ts.map

package/dist/commands/benchmark.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"benchmark.d.ts","sourceRoot":"","sources":["../../src/commands/benchmark.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,gBAAgB;IAC/B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAmBD,wBAAsB,gBAAgB,CAAC,OAAO,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAqJ/E"}

package/dist/commands/benchmark.js

@@ -0,0 +1,136 @@
+import { resolve } from "path";
+import { existsSync } from "fs";
+import { createDatabase, Migrator, ALL_MIGRATIONS } from "@knowledgine/core";
+function cosineSimilarityFromL2(a, b) {
+    // L2-normalized vectors: cosine_similarity = 1 - L2_distance^2 / 2
+    let sumSq = 0;
+    for (let i = 0; i < a.length; i++) {
+        const diff = a[i] - b[i];
+        sumSq += diff * diff;
+    }
+    const l2dist = Math.sqrt(sumSq);
+    return Math.max(0, 1 - (l2dist * l2dist) / 2);
+}
+function sampleIndices(total, maxSamples) {
+    if (total <= maxSamples)
+        return Array.from({ length: total }, (_, i) => i);
+    const step = total / maxSamples;
+    return Array.from({ length: maxSamples }, (_, i) => Math.floor(i * step));
+}
+export async function benchmarkCommand(options) {
+    const rootPath = options.path ? resolve(options.path) : process.cwd();
+    const dbPath = resolve(rootPath, ".knowledgine", "index.sqlite");
+    if (!existsSync(dbPath)) {
+        console.error(`Error: Database not found at ${dbPath}`);
+        console.error("Run 'knowledgine init --path <dir>' first.");
+        process.exit(1);
+    }
+    if (!options.semantic) {
+        console.error("Use --semantic to run the semantic score distribution benchmark.");
+        process.exit(0);
+    }
+    let db;
+    try {
+        db = createDatabase(dbPath);
+        new Migrator(db, ALL_MIGRATIONS).migrate();
+    }
+    catch (err) {
+        console.error(`Error opening database: ${err instanceof Error ? err.message : String(err)}`);
+        process.exit(1);
+    }
+    const countRow = db.prepare("SELECT COUNT(*) AS count FROM note_embeddings").get();
+    const totalEmbeddings = countRow?.count ?? 0;
+    if (totalEmbeddings === 0) {
+        console.error("No embeddings found. Run 'knowledgine upgrade --semantic' first.");
+        db.close();
+        process.exit(0);
+    }
+    const MAX_SAMPLES = 50;
+    const indices = sampleIndices(totalEmbeddings, MAX_SAMPLES);
+    // Fetch only the sampled rows by offset to avoid loading all BLOBs.
+    const stmtOffset = db.prepare("SELECT note_id, embedding, dimensions FROM note_embeddings ORDER BY note_id LIMIT 1 OFFSET ?");
+    const sample = indices
+        .map((offset) => stmtOffset.get(offset))
+        .filter((row) => row !== undefined);
+    console.error(`\nSemantic Score Distribution Benchmark`);
+    console.error(`Total embeddings: ${totalEmbeddings}`);
+    console.error(`Sample size: ${sample.length}`);
+    console.error(`Computing pairwise cosine similarities...\n`);
+    const BYTES_PER_FLOAT32 = 4;
+    const scores = [];
+    let skippedPairs = 0;
+    for (let i = 0; i < sample.length; i++) {
+        const rowA = sample[i];
+        const dimsA = rowA.dimensions;
+        const maxFloatsA = rowA.embedding.byteLength / BYTES_PER_FLOAT32;
+        if (!Number.isInteger(dimsA) || dimsA <= 0 || dimsA > maxFloatsA)
+            continue;
+        const a = new Float32Array(rowA.embedding.buffer, rowA.embedding.byteOffset, dimsA);
+        for (let j = i + 1; j < sample.length; j++) {
+            const rowB = sample[j];
+            const dimsB = rowB.dimensions;
+            const maxFloatsB = rowB.embedding.byteLength / BYTES_PER_FLOAT32;
+            if (!Number.isInteger(dimsB) || dimsB <= 0 || dimsB > maxFloatsB || dimsB !== dimsA) {
+                skippedPairs++;
+                continue;
+            }
+            const b = new Float32Array(rowB.embedding.buffer, rowB.embedding.byteOffset, dimsB);
+            scores.push(cosineSimilarityFromL2(a, b));
+        }
+    }
+    if (scores.length === 0) {
+        console.error("Not enough samples to compute distribution (need at least 2 valid matching-dimension embeddings).");
+        if (skippedPairs > 0) {
+            console.error(`Note: Skipped ${skippedPairs} pair(s) due to invalid or mismatched dimensions.`);
+        }
+        db.close();
+        return;
+    }
+    if (skippedPairs > 0) {
+        console.error(`Note: Skipped ${skippedPairs} pair(s) with invalid or mismatched dimensions.`);
+    }
+    scores.sort((a, b) => a - b);
+    const n = scores.length;
+    const mean = scores.reduce((s, x) => s + x, 0) / n;
+    const variance = scores.reduce((s, x) => s + (x - mean) ** 2, 0) / n;
+    const stddev = Math.sqrt(variance);
+    const min = scores[0];
+    const max = scores[n - 1];
+    const p25 = scores[Math.floor(n * 0.25)];
+    const median = scores[Math.floor(n * 0.5)];
+    const p75 = scores[Math.floor(n * 0.75)];
+    const p90 = scores[Math.floor(n * 0.9)];
+    console.error(`Results (${n} pairs):`);
+    console.error(`  mean:   ${(mean * 100).toFixed(2)}%`);
+    console.error(`  stddev: ${(stddev * 100).toFixed(2)}%`);
+    console.error(`  min:    ${(min * 100).toFixed(2)}%`);
+    console.error(`  p25:    ${(p25 * 100).toFixed(2)}%`);
+    console.error(`  median: ${(median * 100).toFixed(2)}%`);
+    console.error(`  p75:    ${(p75 * 100).toFixed(2)}%`);
+    console.error(`  p90:    ${(p90 * 100).toFixed(2)}%`);
+    console.error(`  max:    ${(max * 100).toFixed(2)}%`);
+    console.error("");
+    if (stddev < 0.05) {
+        console.error("Warning: Low stddev indicates score flattening. Check embedding normalization.");
+    }
+    else {
+        console.error("Score distribution looks healthy (stddev >= 5%).");
+    }
+    console.error("");
+    // Also output as JSON to stdout for scripting
+    console.log(JSON.stringify({
+        totalEmbeddings: totalEmbeddings,
+        sampleSize: sample.length,
+        pairCount: n,
+        mean: parseFloat((mean * 100).toFixed(4)),
+        stddev: parseFloat((stddev * 100).toFixed(4)),
+        min: parseFloat((min * 100).toFixed(4)),
+        p25: parseFloat((p25 * 100).toFixed(4)),
+        median: parseFloat((median * 100).toFixed(4)),
+        p75: parseFloat((p75 * 100).toFixed(4)),
+        p90: parseFloat((p90 * 100).toFixed(4)),
+        max: parseFloat((max * 100).toFixed(4)),
+    }, null, 2));
+    db.close();
+}
+//# sourceMappingURL=benchmark.js.map

package/dist/commands/benchmark.js.map

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package/dist/commands/deprecation-check.d.ts

@@ -2,6 +2,7 @@ export interface DeprecationCheckOptions {
     path?: string;
     apply?: boolean;
     threshold?: string;
+    excludeTranslations?: boolean;
 }
 export declare function deprecationCheckCommand(options: DeprecationCheckOptions): Promise<void>;
 //# sourceMappingURL=deprecation-check.d.ts.map

package/dist/commands/deprecation-check.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"deprecation-check.d.ts","sourceRoot":"","sources":["../../src/commands/deprecation-check.ts"],"names":[],"mappings":"AAUA,MAAM,WAAW,uBAAuB;IACtC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,mBAAmB,CAAC,EAAE,OAAO,CAAC;CAC/B;AA4CD,wBAAsB,uBAAuB,CAAC,OAAO,EAAE,uBAAuB,GAAG,OAAO,CAAC,IAAI,CAAC,CA0E7F"}

package/dist/commands/deprecation-check.js

@@ -3,10 +3,24 @@ import { loadConfig, resolveDefaultPath, createDatabase, Migrator, KnowledgeRepo
  * 簡易テキスト類似度（Jaccard係数）でdeprecation候補を検出する
  */
 function jaccardSimilarity(a, b) {
-    const tokenize = (text) => new Set(text
-        .toLowerCase()
-        .split(/\W+/)
-        .filter((t) => t.length > 2));
+    const tokenize = (text) => {
+        const lower = text.toLowerCase();
+        const tokens = new Set();
+        // Word-level tokens for Latin/Cyrillic text
+        for (const token of lower.split(/\W+/)) {
+            if (token.length > 2)
+                tokens.add(token);
+        }
+        // Bigram tokens for CJK characters
+        const cjkRe = /[\u3040-\u309F\u30A0-\u30FF\u4E00-\u9FFF\uAC00-\uD7AF]/g;
+        const cjkChars = lower.match(cjkRe);
+        if (cjkChars && cjkChars.length >= 2) {
+            for (let i = 0; i < cjkChars.length - 1; i++) {
+                tokens.add(cjkChars[i] + cjkChars[i + 1]);
+            }
+        }
+        return tokens;
+    };
     const setA = tokenize(a);
     const setB = tokenize(b);
     if (setA.size === 0 || setB.size === 0)
@@ -31,7 +45,11 @@ export async function deprecationCheckCommand(options) {
     new Migrator(db, ALL_MIGRATIONS).migrate();
     const repository = new KnowledgeRepository(db);
     try {
-        const allNotes = repository.getAllNotes().filter((n) => !n.deprecated);
+        let allNotes = repository.getAllNotes().filter((n) => !n.deprecated);
+        if (options.excludeTranslations) {
+            const translationPattern = /\.(po|pot|mo|xlf|xliff)$|[\\/](locales?|i18n|translations?)[\\/]|\.i18n\./i;
+            allNotes = allNotes.filter((n) => !translationPattern.test(n.file_path));
+        }
         const candidates = [];
         // O(n²) comparison — intended for small knowledge bases
         // For large bases, use findNotesByTimeProximity() as pre-filter

package/dist/commands/deprecation-check.js.map

@@ -1 +1 @@
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package/dist/commands/doctor.d.ts

@@ -0,0 +1,23 @@
+export interface DiagnosticResult {
+    name: string;
+    status: "pass" | "warning" | "error";
+    message: string;
+    fix?: string;
+}
+export interface DoctorOptions {
+    path?: string;
+    fix?: boolean;
+}
+export declare function checkKnowledgineDir(knowledgineDir: string): DiagnosticResult;
+export declare function checkDatabaseExists(dbPath: string): DiagnosticResult;
+export declare function checkDatabaseNotEmpty(dbPath: string): DiagnosticResult;
+export declare function checkDatabasePermissions(dbPath: string): DiagnosticResult;
+export declare function checkFTS5Integrity(dbPath: string): DiagnosticResult;
+export declare function checkModelFiles(): DiagnosticResult;
+export declare function checkEmbeddingCoverage(dbPath: string): DiagnosticResult;
+export declare function checkSqliteVec(dbPath: string): Promise<DiagnosticResult>;
+export declare function checkStaleEmbeddings(dbPath: string): DiagnosticResult;
+export declare function checkNodeVersion(): DiagnosticResult;
+export declare function checkSearchLatency(dbPath: string): Promise<DiagnosticResult>;
+export declare function doctorCommand(options: DoctorOptions): Promise<void>;
+//# sourceMappingURL=doctor.d.ts.map

package/dist/commands/doctor.d.ts.map

@@ -0,0 +1 @@
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