@knowledgine/cli 0.4.0 → 0.5.0

package/dist/commands/start.js

@@ -1,7 +1,7 @@
 import { resolve } from "path";
 import { mkdirSync } from "fs";
 import { watch } from "chokidar";
-import { loadConfig, resolveDefaultPath, createDatabase, loadSqliteVecExtension, Migrator, KnowledgeRepository, GraphRepository, FeedbackRepository, FileProcessor, PatternExtractor, ALL_MIGRATIONS, OnnxEmbeddingProvider, ModelManager, DEFAULT_MODEL_NAME, } from "@knowledgine/core";
+import { loadConfig, resolveDefaultPath, createDatabase, loadSqliteVecExtension, Migrator, KnowledgeRepository, GraphRepository, FeedbackRepository, FileProcessor, PatternExtractor, ALL_MIGRATIONS, OnnxEmbeddingProvider, ModelManager, DEFAULT_MODEL_NAME, checkSemanticReadiness, } from "@knowledgine/core";
 import { createKnowledgineMcpServer, StdioServerTransport } from "@knowledgine/mcp-server";
 import { indexFile } from "../lib/indexer.js";
 import { createBox, colors, symbols } from "../lib/ui/index.js";
@@ -11,18 +11,16 @@ export async function startCommand(options) {
     mkdirSync(resolve(rootPath, ".knowledgine"), { recursive: true });
     // Load config (respects .knowledginerc.json and env vars)
     const config = loadConfig(rootPath);
-    // Auto-detect model for backward compatibility
-    if (!config.embedding.enabled) {
-        const modelManager = new ModelManager();
-        if (modelManager.isModelAvailable(config.embedding.modelName)) {
-            config.embedding.enabled = true;
-            console.error(`${symbols.success} ${colors.success("Semantic search enabled (model detected)")}`);
-        }
+    // Auto-detect model for backward compatibility (without mutating config)
+    const modelManager = new ModelManager();
+    const autoDetected = !config.embedding.enabled && modelManager.isModelAvailable(config.embedding.modelName);
+    if (autoDetected) {
+        console.error(`${symbols.success} ${colors.success("Semantic search enabled (model detected)")}`);
     }
     // Initialize database
     const db = createDatabase(config.dbPath);
-    // Load sqlite-vec if semantic search is enabled
-    if (config.embedding.enabled) {
+    // Load sqlite-vec if semantic search is enabled (or auto-detected)
+    if (config.embedding.enabled || autoDetected) {
         await loadSqliteVecExtension(db);
     }
     new Migrator(db, ALL_MIGRATIONS).migrate();
@@ -34,21 +32,35 @@ export async function startCommand(options) {
     if (stats.totalNotes === 0) {
         console.error(`${symbols.warning} ${colors.warning("No notes indexed. Run `knowledgine init` first.")}`);
     }
-    // Initialize embedding provider if model is available and semantic is enabled
+    // Initialize embedding provider based on semantic readiness
+    // Use effective config that accounts for auto-detection (without mutating original config)
+    const effectiveConfig = autoDetected
+        ? { ...config, embedding: { ...config.embedding, enabled: true } }
+        : config;
     let embeddingProvider;
-    if (config.embedding.enabled) {
-        const modelManager = new ModelManager();
-        if (modelManager.isModelAvailable()) {
-            embeddingProvider = new OnnxEmbeddingProvider(DEFAULT_MODEL_NAME, modelManager);
-        }
-        else {
-            // Warn if notes exist but no embeddings
-            const notesWithout = repository.getNotesWithoutEmbeddings();
-            if (notesWithout.length > 0) {
-                console.error(`${symbols.warning} ${colors.warning(`${notesWithout.length} notes have no embeddings. ` +
+    const semanticReadiness = checkSemanticReadiness(effectiveConfig, modelManager, repository);
+    if (semanticReadiness.ready) {
+        embeddingProvider = new OnnxEmbeddingProvider(DEFAULT_MODEL_NAME, modelManager);
+        // ONNX セッションをウォームアップして初回 semantic 検索のレイテンシスパイクを防止
+        embeddingProvider.embed("warmup").catch(() => {
+            // ウォームアップ失敗は無視（MCP 起動を妨げない）
+        });
+    }
+    else if (semanticReadiness.configEnabled) {
+        if (!semanticReadiness.modelAvailable) {
+            // Config enabled but model not downloaded
+            const notesWithoutCount = repository.getNotesWithoutEmbeddingIds().length;
+            if (notesWithoutCount > 0) {
+                console.error(`${symbols.warning} ${colors.warning(`${notesWithoutCount} notes have no embeddings. ` +
                     "Semantic search unavailable. Run 'knowledgine upgrade --semantic' to download the model and generate embeddings.")}`);
             }
         }
+        else if (semanticReadiness.embeddingsCount === 0 && semanticReadiness.totalNotes > 0) {
+            // Model available but embeddings not yet generated
+            const notesWithoutCount = repository.getNotesWithoutEmbeddingIds().length;
+            console.error(`${symbols.warning} ${colors.warning(`${notesWithoutCount} notes have no embeddings. ` +
+                "Semantic search unavailable. Run 'knowledgine upgrade --semantic' to download the model and generate embeddings.")}`);
+        }
     }
     else {
         console.error(`${symbols.info} ${colors.info("Running with FTS5 full-text search only")}`);
@@ -64,7 +76,7 @@ export async function startCommand(options) {
     });
     const transport = new StdioServerTransport();
     await server.connect(transport);
-    const searchMode = config.embedding.enabled ? "semantic + FTS5" : "FTS5 full-text search";
+    const searchMode = semanticReadiness.ready ? "semantic + FTS5" : "FTS5 full-text search";
     console.error(createBox([
         `${symbols.info} Path:   ${rootPath}`,
         `${symbols.info} Notes:  ${stats.totalNotes} indexed`,
@@ -109,53 +121,73 @@ export async function startCommand(options) {
     // File watcher for auto-reindexing
     const fileProcessor = new FileProcessor();
     const patternExtractor = new PatternExtractor();
-    const watcher = watch("**/*.md", {
-        cwd: rootPath,
-        ignored: [/node_modules/, /\.knowledgine/],
-        persistent: true,
-        ignoreInitial: true,
-    });
-    watcher.on("add", async (filePath) => {
-        try {
-            const noteId = await indexFile(filePath, rootPath, fileProcessor, patternExtractor, repository, graphRepository);
-            if (embeddingProvider) {
-                const note = repository.getNoteById(noteId);
-                if (note) {
-                    const embedding = await embeddingProvider.embed(note.content);
-                    repository.saveEmbedding(noteId, embedding, config.embedding.modelName);
+    let watcher;
+    if (options.watch !== false) {
+        watcher = watch("**/*.md", {
+            cwd: rootPath,
+            ignored: [/node_modules/, /\.knowledgine/, /\.git/, /dist/],
+            persistent: true,
+            ignoreInitial: true,
+        });
+        watcher.on("error", (err) => {
+            const nodeErr = err;
+            if (nodeErr.code === "EMFILE" || nodeErr.code === "ENOSPC") {
+                console.error(`${symbols.error} ${colors.error("File watcher limit reached. Use --no-watch to disable.")}`);
+                console.error(`  Or increase the limit: ulimit -n 4096`);
+                // Gracefully close the watcher to prevent further EMFILE cascading
+                watcher?.close().catch(() => { });
+                watcher = undefined;
+                console.error(`${symbols.info} ${colors.info("File watcher stopped. MCP server continues without auto-reindexing.")}`);
+            }
+            else {
+                console.error(`${symbols.error} ${colors.error(`File watcher error: ${nodeErr.message ?? String(err)}`)}`);
+            }
+        });
+        watcher.on("add", async (filePath) => {
+            try {
+                const noteId = await indexFile(filePath, rootPath, fileProcessor, patternExtractor, repository, graphRepository);
+                if (embeddingProvider) {
+                    const note = repository.getNoteById(noteId);
+                    if (note) {
+                        const embedding = await embeddingProvider.embed(note.content);
+                        repository.saveEmbedding(noteId, embedding, config.embedding.modelName);
+                    }
                 }
+                console.error(`${symbols.arrow} ${colors.info(`Indexed: ${filePath}`)}`);
             }
-            console.error(`${symbols.arrow} ${colors.info(`Indexed: ${filePath}`)}`);
-        }
-        catch (error) {
-            console.error(`${symbols.error} ${colors.error(`Error indexing ${filePath}: ${error instanceof Error ? error.message : error}`)}`);
-        }
-    });
-    watcher.on("change", async (filePath) => {
-        try {
-            const noteId = await indexFile(filePath, rootPath, fileProcessor, patternExtractor, repository, graphRepository);
-            if (embeddingProvider) {
-                const note = repository.getNoteById(noteId);
-                if (note) {
-                    const embedding = await embeddingProvider.embed(note.content);
-                    repository.saveEmbedding(noteId, embedding, config.embedding.modelName);
+            catch (error) {
+                console.error(`${symbols.error} ${colors.error(`Error indexing ${filePath}: ${error instanceof Error ? error.message : error}`)}`);
+            }
+        });
+        watcher.on("change", async (filePath) => {
+            try {
+                const noteId = await indexFile(filePath, rootPath, fileProcessor, patternExtractor, repository, graphRepository);
+                if (embeddingProvider) {
+                    const note = repository.getNoteById(noteId);
+                    if (note) {
+                        const embedding = await embeddingProvider.embed(note.content);
+                        repository.saveEmbedding(noteId, embedding, config.embedding.modelName);
+                    }
                 }
+                console.error(`${symbols.arrow} ${colors.info(`Re-indexed: ${filePath}`)}`);
             }
-            console.error(`${symbols.arrow} ${colors.info(`Re-indexed: ${filePath}`)}`);
-        }
-        catch (error) {
-            console.error(`${symbols.error} ${colors.error(`Error re-indexing ${filePath}: ${error instanceof Error ? error.message : error}`)}`);
-        }
-    });
-    watcher.on("unlink", (filePath) => {
-        try {
-            repository.deleteNoteByPath(filePath);
-            console.error(`${symbols.arrow} ${colors.info(`Removed: ${filePath}`)}`);
-        }
-        catch (error) {
-            console.error(`${symbols.error} ${colors.error(`Error removing ${filePath}: ${error instanceof Error ? error.message : error}`)}`);
-        }
-    });
+            catch (error) {
+                console.error(`${symbols.error} ${colors.error(`Error re-indexing ${filePath}: ${error instanceof Error ? error.message : error}`)}`);
+            }
+        });
+        watcher.on("unlink", (filePath) => {
+            try {
+                repository.deleteNoteByPath(filePath);
+                console.error(`${symbols.arrow} ${colors.info(`Removed: ${filePath}`)}`);
+            }
+            catch (error) {
+                console.error(`${symbols.error} ${colors.error(`Error removing ${filePath}: ${error instanceof Error ? error.message : error}`)}`);
+            }
+        });
+    }
+    else {
+        console.error(`${symbols.info} ${colors.info("File watcher disabled (--no-watch)")}`);
+    }
     // Graceful shutdown
     const shutdown = async () => {
         console.error("Shutting down...");
@@ -168,7 +200,9 @@ export async function startCommand(options) {
         if (embeddingProvider) {
             await embeddingProvider.close();
         }
-        await watcher.close();
+        if (watcher) {
+            await watcher.close();
+        }
         db.close();
         process.exit(0);
     };

package/dist/commands/start.js.map

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package/dist/commands/status.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"status.d.ts","sourceRoot":"","sources":["../../src/commands/status.ts"],"names":[],"mappings":"AAeA,MAAM,WAAW,aAAa;IAC5B,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AA2BD,wBAAsB,aAAa,CAAC,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC,CA2IzE"}
+{"version":3,"file":"status.d.ts","sourceRoot":"","sources":["../../src/commands/status.ts"],"names":[],"mappings":"AAiBA,MAAM,WAAW,aAAa;IAC5B,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AA2BD,wBAAsB,aAAa,CAAC,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC,CA8IzE"}

package/dist/commands/status.js

@@ -1,6 +1,6 @@
 import { resolve } from "path";
 import { existsSync, statSync, readFileSync } from "fs";
-import { loadConfig, resolveDefaultPath, createDatabase, Migrator, KnowledgeRepository, ALL_MIGRATIONS, ModelManager, } from "@knowledgine/core";
+import { loadConfig, resolveDefaultPath, createDatabase, Migrator, KnowledgeRepository, ALL_MIGRATIONS, ModelManager, checkSemanticReadiness, } from "@knowledgine/core";
 import { createBox, colors, symbols } from "../lib/ui/index.js";
 import { getConfigPath, TARGETS, PROJECT_CONFIG_SUPPORT } from "./setup.js";
 import * as TOML from "smol-toml";
@@ -49,10 +49,12 @@ export async function statusCommand(options) {
     }
     const dbStat = statSync(dbPath);
     const sizeStr = formatBytes(dbStat.size);
+    const config = loadConfig(rootPath);
     // Open DB and get stats
     let totalNotes = 0;
     let totalPatterns = 0;
-    let notesWithoutEmbeddings = 0;
+    let notesBySource = {};
+    let readiness;
     try {
         const db = createDatabase(dbPath);
         new Migrator(db, ALL_MIGRATIONS).migrate();
@@ -60,7 +62,9 @@ export async function statusCommand(options) {
         const stats = repository.getStats();
         totalNotes = stats.totalNotes;
         totalPatterns = stats.totalPatterns;
-        notesWithoutEmbeddings = repository.getNotesWithoutEmbeddings().length;
+        notesBySource = stats.notesBySource;
+        const modelManager = new ModelManager();
+        readiness = checkSemanticReadiness(config, modelManager, repository);
         db.close();
     }
     catch (error) {
@@ -68,13 +72,9 @@ export async function statusCommand(options) {
         console.error("");
         return;
     }
-    const embeddingsGenerated = totalNotes - notesWithoutEmbeddings;
-    // Model check
-    const modelManager = new ModelManager();
-    const modelAvailable = modelManager.isModelAvailable();
-    // Semantic search mode
-    const config = loadConfig(rootPath);
-    const semanticMode = config.embedding.enabled || modelAvailable;
+    // readiness is always set if we reach here (no early return from catch)
+    const { modelAvailable, embeddingsCount: embeddingsGenerated } = readiness;
+    const semanticMode = readiness.ready;
     // MCP config checks — check all supported targets (global + project level)
     const configuredTools = [];
     for (const t of TARGETS) {
@@ -100,11 +100,7 @@ export async function statusCommand(options) {
     }
     // Overall status
     const isReady = totalNotes > 0;
-    const statusLabel = isReady
-        ? semanticMode
-            ? "Ready (semantic + FTS5)"
-            : "Ready (FTS5 only)"
-        : "Not initialized";
+    const statusLabel = readiness.label;
     // Build content
     const modelLine = modelAvailable
         ? `${symbols.success} all-MiniLM-L6-v2 (available)`
@@ -123,10 +119,14 @@ export async function statusCommand(options) {
     const mcpLine = configuredTools.length > 0
         ? `${symbols.success} ${colors.success(configuredTools.join(", "))}`
         : colors.hint("none configured");
+    // Build source breakdown lines
+    const sourceEntries = Object.entries(notesBySource).sort(([, a], [, b]) => b - a);
+    const sourceLines = sourceEntries.map(([source, count]) => `    ${colors.dim(source.padEnd(16))}${count}`);
     const contentParts = [
         `${colors.bold("Database")}`,
         `  ${pad("Path:")}${dbPath} (${sizeStr})`,
         `  ${pad("Notes:")}${colors.info(String(totalNotes))} indexed`,
+        ...(sourceEntries.length > 1 ? sourceLines : []),
         `  ${pad("Patterns:")}${colors.info(String(totalPatterns))} extracted`,
         `  ${pad("Embeddings:")}${colors.info(`${embeddingsGenerated}/${totalNotes}`)} generated`,
         "",

package/dist/commands/status.js.map

@@ -1 +1 @@
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package/dist/commands/upgrade.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"upgrade.d.ts","sourceRoot":"","sources":["../../src/commands/upgrade.ts"],"names":[],"mappings":"AAmBA,MAAM,WAAW,cAAc;IAC7B,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,cAAc,CAAC,OAAO,EAAE,cAAc,GAAG,OAAO,CAAC,IAAI,CAAC,CAoK3E"}
+{"version":3,"file":"upgrade.d.ts","sourceRoot":"","sources":["../../src/commands/upgrade.ts"],"names":[],"mappings":"AAmBA,MAAM,WAAW,cAAc;IAC7B,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,cAAc,CAAC,OAAO,EAAE,cAAc,GAAG,OAAO,CAAC,IAAI,CAAC,CA+K3E"}

package/dist/commands/upgrade.js

@@ -84,8 +84,8 @@ export async function upgradeCommand(options) {
             });
             console.error(`${symbols.success} ${colors.success("Model download complete.")}`);
         }
-        catch (error) {
-            console.error(colors.error(`\nModel download failed: ${error instanceof Error ? error.message : String(error)}`));
+        catch {
+            console.error(colors.error("\nModel download failed. Check your network connection and try again."));
             console.error(colors.error("Semantic search upgrade aborted."));
             db.close();
             process.exitCode = 1;
@@ -97,25 +97,36 @@ export async function upgradeCommand(options) {
     }
     // Generate embeddings for notes that don't have them
     const embeddingProvider = new OnnxEmbeddingProvider(DEFAULT_MODEL_NAME, modelManager);
-    const notesWithout = repository.getNotesWithoutEmbeddings();
-    if (notesWithout.length > 0) {
+    const noteIds = repository.getNotesWithoutEmbeddingIds();
+    if (noteIds.length > 0) {
         // Warm up the ONNX session (first call is slow due to model loading)
         console.error(colors.info("\nLoading embedding model..."));
         await embeddingProvider.embed("warmup");
         console.error("");
-        const embProgress = createProgress(notesWithout.length, "Generating embeddings");
+        const BATCH_SIZE = 20;
+        const embProgress = createProgress(noteIds.length, "Generating embeddings");
         let generated = 0;
         let failed = 0;
-        for (const note of notesWithout) {
+        for (let i = 0; i < noteIds.length; i += BATCH_SIZE) {
+            const batchIds = noteIds.slice(i, i + BATCH_SIZE);
+            const noteRows = repository.getNotesByIds(batchIds);
+            // getNotesByIds の返り順は不定なので id→note Map で安全にマッピング
+            const noteMap = new Map(noteRows.map((n) => [n.id, n]));
+            const orderedNotes = batchIds.map((id) => noteMap.get(id)).filter((n) => n != null);
             try {
-                const embedding = await embeddingProvider.embed(note.content);
-                repository.saveEmbedding(note.id, embedding, config.embedding.modelName);
-                generated++;
-                embProgress.update(generated);
+                const embeddings = await embeddingProvider.embedBatch(orderedNotes.map((n) => n.content));
+                const result = repository.saveEmbeddingBatch(orderedNotes.map((n, j) => ({
+                    noteId: n.id,
+                    embedding: embeddings[j],
+                    modelName: config.embedding.modelName,
+                })));
+                generated += result.saved;
+                failed += result.failed;
             }
             catch {
-                failed++;
+                failed += orderedNotes.length;
             }
+            embProgress.update(generated + failed > noteIds.length ? noteIds.length : generated + failed);
         }
         embProgress.finish();
         console.error(`  ${symbols.success} ${colors.success(`Generated: ${generated}`)}, Failed: ${failed}`);

package/dist/commands/upgrade.js.map

@@ -1 +1 @@
-{"version":3,"file":"upgrade.js","sourceRoot":"","sources":["../../src/commands/upgrade.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAC;AAC/B,OAAO,EAAE,UAAU,EAAE,MAAM,IAAI,CAAC;AAChC,OAAO,EACL,UAAU,EACV,aAAa,EACb,kBAAkB,EAClB,cAAc,EACd,sBAAsB,EACtB,QAAQ,EACR,mBAAmB,EACnB,cAAc,EACd,qBAAqB,EACrB,YAAY,EACZ,kBAAkB,EAClB,aAAa,GACd,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAOhE,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,OAAuB;IAC1D,MAAM,QAAQ,GAAG,kBAAkB,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IAElD,IAAI,CAAC,OAAO,CAAC,QAAQ,EAAE,CAAC;QACtB,OAAO,CAAC,KAAK,CAAC,uCAAuC,CAAC,CAAC;QACvD,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QAClB,OAAO,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAC;QACrC,OAAO,CAAC,KAAK,CAAC,8EAA8E,CAAC,CAAC;QAC9F,OAAO;IACT,CAAC;IAED,uBAAuB;IACvB,MAAM,cAAc,GAAG,OAAO,CAAC,QAAQ,EAAE,cAAc,CAAC,CAAC;IACzD,IAAI,CAAC,UAAU,CAAC,cAAc,CAAC,EAAE,CAAC;QAChC,OAAO,CAAC,KAAK,CACX,MAAM,CAAC,KAAK,CAAC,wDAAwD,QAAQ,UAAU,CAAC,CACzF,CAAC;QACF,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;QACrB,OAAO;IACT,CAAC;IAED,MAAM,MAAM,GAAG,UAAU,CAAC,QAAQ,CAAC,CAAC;IACpC,MAAM,CAAC,SAAS,CAAC,OAAO,GAAG,IAAI,CAAC;IAEhC,MAAM,EAAE,GAAG,cAAc,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACzC,MAAM,SAAS,GAAG,MAAM,sBAAsB,CAAC,EAAE,CAAC,CAAC;IACnD,IAAI,QAAQ,CAAC,EAAE,EAAE,cAAc,CAAC,CAAC,OAAO,EAAE,CAAC;IAE3C,oDAAoD;IACpD,IAAI,SAAS,EAAE,CAAC;QACd,uCAAuC;QACvC,IAAI,CAAC;YACH,EAAE,CAAC,OAAO,CAAC,0CAA0C,CAAC,CAAC,GAAG,EAAE,CAAC;QAC/D,CAAC;QAAC,MAAM,CAAC;YACP,EAAE,CAAC,IAAI,CAAC;;;;;;;;OAQP,CAAC,CAAC;QACL,CAAC;QAED,yFAAyF;QACzF,MAAM,QAAQ,GACZ,EAAE,CAAC,OAAO,CAAC,+CAA+C,CAAC,CAAC,GAAG,EAChE,CAAC,CAAC,CAAC;QACJ,MAAM,QAAQ,GACZ,EAAE,CAAC,OAAO,CAAC,2CAA2C,CAAC,CAAC,GAAG,EAC5D,CAAC,CAAC,CAAC;QAEJ,IAAI,QAAQ,GAAG,CAAC,IAAI,QAAQ,GAAG,QAAQ,EAAE,CAAC;YACxC,yCAAyC;YACzC,MAAM,OAAO,GAAG,EAAE;iBACf,OAAO,CACN;;;OAGH,CACE;iBACA,GAAG,EAAmD,CAAC;YAE1D,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACvB,MAAM,MAAM,GAAG,EAAE,CAAC,OAAO,CACvB,qFAAqF,CACtF,CAAC;gBACF,MAAM,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,GAAG,EAAE;oBAC7B,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE,CAAC;wBAC1B,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,EAAE,GAAG,CAAC,SAAS,CAAC,CAAC;oBACzC,CAAC;gBACH,CAAC,CAAC,CAAC;gBACH,EAAE,EAAE,CAAC;gBACL,OAAO,CAAC,KAAK,CAAC,UAAU,OAAO,CAAC,MAAM,gCAAgC,CAAC,CAAC;YAC1E,CAAC;QACH,CAAC;IACH,CAAC;IAED,MAAM,UAAU,GAAG,IAAI,mBAAmB,CAAC,EAAE,CAAC,CAAC;IAE/C,iBAAiB;IACjB,MAAM,YAAY,GAAG,IAAI,YAAY,EAAE,CAAC;IACxC,IAAI,CAAC,YAAY,CAAC,gBAAgB,EAAE,EAAE,CAAC;QACrC,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,wCAAwC,CAAC,CAAC,CAAC;QACrE,IAAI,CAAC;YACH,MAAM,aAAa,CAAC,YAAY,EAAE;gBAChC,UAAU,EAAE,CAAC,QAAQ,EAAE,EAAE;oBACvB,IAAI,QAAQ,CAAC,KAAK,EAAE,CAAC;wBACnB,MAAM,EAAE,GAAG,CAAC,QAAQ,CAAC,UAAU,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;wBAC5D,MAAM,OAAO,GAAG,CAAC,QAAQ,CAAC,KAAK,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;wBAC5D,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,QAAQ,CAAC,IAAI,KAAK,EAAE,IAAI,OAAO,KAAK,CAAC,CAAC;oBACpE,CAAC;gBACH,CAAC;gBACD,cAAc,EAAE,CAAC,IAAI,EAAE,EAAE;oBACvB,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,OAAO,CAAC,OAAO,IAAI,IAAI,cAAc,CAAC,CAAC;gBACrE,CAAC;aACF,CAAC,CAAC;YACH,OAAO,CAAC,KAAK,CAAC,GAAG,OAAO,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC,0BAA0B,CAAC,EAAE,CAAC,CAAC;QACpF,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,OAAO,CAAC,KAAK,CACX,MAAM,CAAC,KAAK,CACV,4BAA4B,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EAAE,CACrF,CACF,CAAC;YACF,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,kCAAkC,CAAC,CAAC,CAAC;YAChE,EAAE,CAAC,KAAK,EAAE,CAAC;YACX,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;YACrB,OAAO;QACT,CAAC;IACH,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,KAAK,CAAC,GAAG,OAAO,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC,oCAAoC,CAAC,EAAE,CAAC,CAAC;IAC9F,CAAC;IAED,qDAAqD;IACrD,MAAM,iBAAiB,GAAG,IAAI,qBAAqB,CAAC,kBAAkB,EAAE,YAAY,CAAC,CAAC;IACtF,MAAM,YAAY,GAAG,UAAU,CAAC,yBAAyB,EAAE,CAAC;IAE5D,IAAI,YAAY,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC5B,qEAAqE;QACrE,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,8BAA8B,CAAC,CAAC,CAAC;QAC3D,MAAM,iBAAiB,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;QACxC,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QAElB,MAAM,WAAW,GAAG,cAAc,CAAC,YAAY,CAAC,MAAM,EAAE,uBAAuB,CAAC,CAAC;QACjF,IAAI,SAAS,GAAG,CAAC,CAAC;QAClB,IAAI,MAAM,GAAG,CAAC,CAAC;QAEf,KAAK,MAAM,IAAI,IAAI,YAAY,EAAE,CAAC;YAChC,IAAI,CAAC;gBACH,MAAM,SAAS,GAAG,MAAM,iBAAiB,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;gBAC9D,UAAU,CAAC,aAAa,CAAC,IAAI,CAAC,EAAE,EAAE,SAAS,EAAE,MAAM,CAAC,SAAS,CAAC,SAAS,CAAC,CAAC;gBACzE,SAAS,EAAE,CAAC;gBACZ,WAAW,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;YAChC,CAAC;YAAC,MAAM,CAAC;gBACP,MAAM,EAAE,CAAC;YACX,CAAC;QACH,CAAC;QAED,WAAW,CAAC,MAAM,EAAE,CAAC;QACrB,OAAO,CAAC,KAAK,CACX,KAAK,OAAO,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC,cAAc,SAAS,EAAE,CAAC,aAAa,MAAM,EAAE,CACvF,CAAC;IACJ,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,KAAK,CAAC,GAAG,OAAO,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC,oCAAoC,CAAC,EAAE,CAAC,CAAC;IAC9F,CAAC;IAED,4BAA4B;IAC5B,aAAa,CAAC,QAAQ,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC,CAAC;IAE5C,OAAO,CAAC,KAAK,CACX,IAAI;QACF,SAAS,CACP;YACE,GAAG,OAAO,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC,yBAAyB,CAAC,EAAE;YACjE,uCAAuC;YACvC,EAAE;YACF,GAAG,OAAO,CAAC,KAAK,IAAI,MAAM,CAAC,IAA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+{"version":3,"file":"upgrade.js","sourceRoot":"","sources":["../../src/commands/upgrade.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAC;AAC/B,OAAO,EAAE,UAAU,EAAE,MAAM,IAAI,CAAC;AAChC,OAAO,EACL,UAAU,EACV,aAAa,EACb,kBAAkB,EAClB,cAAc,EACd,sBAAsB,EACtB,QAAQ,EACR,mBAAmB,EACnB,cAAc,EACd,qBAAqB,EACrB,YAAY,EACZ,kBAAkB,EAClB,aAAa,GACd,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAOhE,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,OAAuB;IAC1D,MAAM,QAAQ,GAAG,kBAAkB,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IAElD,IAAI,CAAC,OAAO,CAAC,QAAQ,EAAE,CAAC;QACtB,OAAO,CAAC,KAAK,CAAC,uCAAuC,CAAC,CAAC;QACvD,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QAClB,OAAO,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAC;QACrC,OAAO,CAAC,KAAK,CAAC,8EAA8E,CAAC,CAAC;QAC9F,OAAO;IACT,CAAC;IAED,uBAAuB;IACvB,MAAM,cAAc,GAAG,OAAO,CAAC,QAAQ,EAAE,cAAc,CAAC,CAAC;IACzD,IAAI,CAAC,UAAU,CAAC,cAAc,CAAC,EAAE,CAAC;QAChC,OAAO,CAAC,KAAK,CACX,MAAM,CAAC,KAAK,CAAC,wDAAwD,QAAQ,UAAU,CAAC,CACzF,CAAC;QACF,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;QACrB,OAAO;IACT,CAAC;IAED,MAAM,MAAM,GAAG,UAAU,CAAC,QAAQ,CAAC,CAAC;IACpC,MAAM,CAAC,SAAS,CAAC,OAAO,GAAG,IAAI,CAAC;IAEhC,MAAM,EAAE,GAAG,cAAc,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACzC,MAAM,SAAS,GAAG,MAAM,sBAAsB,CAAC,EAAE,CAAC,CAAC;IACnD,IAAI,QAAQ,CAAC,EAAE,EAAE,cAAc,CAAC,CAAC,OAAO,EAAE,CAAC;IAE3C,oDAAoD;IACpD,IAAI,SAAS,EAAE,CAAC;QACd,uCAAuC;QACvC,IAAI,CAAC;YACH,EAAE,CAAC,OAAO,CAAC,0CAA0C,CAAC,CAAC,GAAG,EAAE,CAAC;QAC/D,CAAC;QAAC,MAAM,CAAC;YACP,EAAE,CAAC,IAAI,CAAC;;;;;;;;OAQP,CAAC,CAAC;QACL,CAAC;QAED,yFAAyF;QACzF,MAAM,QAAQ,GACZ,EAAE,CAAC,OAAO,CAAC,+CAA+C,CAAC,CAAC,GAAG,EAChE,CAAC,CAAC,CAAC;QACJ,MAAM,QAAQ,GACZ,EAAE,CAAC,OAAO,CAAC,2CAA2C,CAAC,CAAC,GAAG,EAC5D,CAAC,CAAC,CAAC;QAEJ,IAAI,QAAQ,GAAG,CAAC,IAAI,QAAQ,GAAG,QAAQ,EAAE,CAAC;YACxC,yCAAyC;YACzC,MAAM,OAAO,GAAG,EAAE;iBACf,OAAO,CACN;;;OAGH,CACE;iBACA,GAAG,EAAmD,CAAC;YAE1D,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACvB,MAAM,MAAM,GAAG,EAAE,CAAC,OAAO,CACvB,qFAAqF,CACtF,CAAC;gBACF,MAAM,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,GAAG,EAAE;oBAC7B,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE,CAAC;wBAC1B,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,EAAE,GAAG,CAAC,SAAS,CAAC,CAAC;oBACzC,CAAC;gBACH,CAAC,CAAC,CAAC;gBACH,EAAE,EAAE,CAAC;gBACL,OAAO,CAAC,KAAK,CAAC,UAAU,OAAO,CAAC,MAAM,gCAAgC,CAAC,CAAC;YAC1E,CAAC;QACH,CAAC;IACH,CAAC;IAED,MAAM,UAAU,GAAG,IAAI,mBAAmB,CAAC,EAAE,CAAC,CAAC;IAE/C,iBAAiB;IACjB,MAAM,YAAY,GAAG,IAAI,YAAY,EAAE,CAAC;IACxC,IAAI,CAAC,YAAY,CAAC,gBAAgB,EAAE,EAAE,CAAC;QACrC,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,wCAAwC,CAAC,CAAC,CAAC;QACrE,IAAI,CAAC;YACH,MAAM,aAAa,CAAC,YAAY,EAAE;gBAChC,UAAU,EAAE,CAAC,QAAQ,EAAE,EAAE;oBACvB,IAAI,QAAQ,CAAC,KAAK,EAAE,CAAC;wBACnB,MAAM,EAAE,GAAG,CAAC,QAAQ,CAAC,UAAU,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;wBAC5D,MAAM,OAAO,GAAG,CAAC,QAAQ,CAAC,KAAK,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;wBAC5D,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,QAAQ,CAAC,IAAI,KAAK,EAAE,IAAI,OAAO,KAAK,CAAC,CAAC;oBACpE,CAAC;gBACH,CAAC;gBACD,cAAc,EAAE,CAAC,IAAI,EAAE,EAAE;oBACvB,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,OAAO,CAAC,OAAO,IAAI,IAAI,cAAc,CAAC,CAAC;gBACrE,CAAC;aACF,CAAC,CAAC;YACH,OAAO,CAAC,KAAK,CAAC,GAAG,OAAO,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC,0BAA0B,CAAC,EAAE,CAAC,CAAC;QACpF,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,CAAC,KAAK,CACX,MAAM,CAAC,KAAK,CAAC,uEAAuE,CAAC,CACtF,CAAC;YACF,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,kCAAkC,CAAC,CAAC,CAAC;YAChE,EAAE,CAAC,KAAK,EAAE,CAAC;YACX,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;YACrB,OAAO;QACT,CAAC;IACH,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,KAAK,CAAC,GAAG,OAAO,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC,oCAAoC,CAAC,EAAE,CAAC,CAAC;IAC9F,CAAC;IAED,qDAAqD;IACrD,MAAM,iBAAiB,GAAG,IAAI,qBAAqB,CAAC,kBAAkB,EAAE,YAAY,CAAC,CAAC;IACtF,MAAM,OAAO,GAAG,UAAU,CAAC,2BAA2B,EAAE,CAAC;IAEzD,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACvB,qEAAqE;QACrE,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,8BAA8B,CAAC,CAAC,CAAC;QAC3D,MAAM,iBAAiB,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;QACxC,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QAElB,MAAM,UAAU,GAAG,EAAE,CAAC;QACtB,MAAM,WAAW,GAAG,cAAc,CAAC,OAAO,CAAC,MAAM,EAAE,uBAAuB,CAAC,CAAC;QAC5E,IAAI,SAAS,GAAG,CAAC,CAAC;QAClB,IAAI,MAAM,GAAG,CAAC,CAAC;QAEf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,IAAI,UAAU,EAAE,CAAC;YACpD,MAAM,QAAQ,GAAG,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,CAAC;YAClD,MAAM,QAAQ,GAAG,UAAU,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAC;YACpD,iDAAiD;YACjD,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;YACxD,MAAM,YAAY,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC;YACpF,IAAI,CAAC;gBACH,MAAM,UAAU,GAAG,MAAM,iBAAiB,CAAC,UAAU,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC;gBAC1F,MAAM,MAAM,GAAG,UAAU,CAAC,kBAAkB,CAC1C,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC;oBAC1B,MAAM,EAAE,CAAC,CAAC,EAAE;oBACZ,SAAS,EAAE,UAAU,CAAC,CAAC,CAAC;oBACxB,SAAS,EAAE,MAAM,CAAC,SAAS,CAAC,SAAS;iBACtC,CAAC,CAAC,CACJ,CAAC;gBACF,SAAS,IAAI,MAAM,CAAC,KAAK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package/dist/index.js

@@ -41,9 +41,11 @@ program
     .description("Scan and index markdown files (FTS5 full-text search by default)")
     .option("--path <dir>", "Root directory to scan")
     .option("--semantic", "Enable semantic search (download model + generate embeddings)")
+    .option("--no-semantic", "Skip semantic search setup entirely")
     .option("--skip-embeddings", "[deprecated] Use default behavior instead (embeddings are now opt-in)")
     .option("--demo", "Initialize with sample demo notes")
     .option("--force", "Skip confirmation prompts", false)
+    .option("-y, --yes", "Automatically answer yes to all prompts")
     .option("--save-config", "Save defaultPath to .knowledginerc.json in current directory")
     .addHelpText("after", `
 Examples:
@@ -56,10 +58,12 @@ program
     .description("Start MCP server with file watching")
     .option("--path <dir>", "Root directory to serve")
     .option("--ingest", "Enable IngestEngine for all plugins")
+    .option("--no-watch", "Disable file watcher (useful for large repos to avoid EMFILE errors)")
     .addHelpText("after", `
 Example:
   knowledgine start --path ~/notes
-  knowledgine start --path ~/notes --ingest`)
+  knowledgine start --path ~/notes --ingest
+  knowledgine start --path ~/notes --no-watch`)
     .action(startCommand);
 program
     .command("setup")
@@ -101,6 +105,12 @@ program
     .option("--full", "Force full re-ingest (ignore cursor)")
     .option("--all", "Run all registered plugins")
     .option("--repo <owner/repo>", "GitHub repository (required for --source github)")
+    .option("--limit <n>", "Limit number of items (e.g., commits for git-history)", parseInt)
+    .option("--since <date>", "Filter by date (e.g., 2025-01-01, for git-history)")
+    .option("--unlimited", "Disable default limits (git-history)")
+    .option("--force", "Force full re-ingest (alias for --full)")
+    .option("--verbose", "Show details of skipped items")
+    .option("--quiet", "Suppress progress output (for CI)")
     .addHelpText("after", `
 Examples:
   knowledgine ingest --source markdown --path ~/notes
@@ -108,9 +118,15 @@ Examples:
   knowledgine ingest --source claude-sessions --path ~/notes
   knowledgine ingest --all --path ~/notes
   knowledgine ingest --source markdown --full --path ~/notes
+  knowledgine ingest --source git-history --limit 500 --path ~/notes
+  knowledgine ingest --source git-history --since 2025-01-01 --path ~/notes
+  knowledgine ingest --source git-history --unlimited --path ~/notes
 
 Source-specific options:
-  --source github --repo owner/repo  Ingest GitHub PRs and issues (requires GITHUB_TOKEN env var)`)
+  --source github --repo owner/repo  Ingest GitHub PRs and issues (requires GITHUB_TOKEN env var)
+  --limit <n>                        Limit number of commits (git-history, default: 100)
+  --since <date>                     Filter commits by date (git-history)
+  --unlimited                        Disable default commit limit (git-history)`)
     .action(ingestCommand);
 const pluginsCmd = program.command("plugins").description("Manage ingest plugins");
 pluginsCmd.command("list").description("List registered plugins").action(pluginsListCommand);

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/lib/entity-extractor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"entity-extractor.d.ts","sourceRoot":"","sources":["../../src/lib/entity-extractor.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,eAAe,EAAwB,MAAM,mBAAmB,CAAC;AAE/F,MAAM,WAAW,iBAAiB;IAChC,UAAU,EAAE,MAAM,CAAC;IACnB,cAAc,EAAE,MAAM,CAAC;IACvB,aAAa,EAAE,MAAM,CAAC;IACtB,cAAc,EAAE,MAAM,CAAC;IACvB,aAAa,EAAE,MAAM,CAAC;IACtB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED;;;;;GAKG;AACH,wBAAsB,oBAAoB,CACxC,UAAU,EAAE,mBAAmB,EAC/B,eAAe,EAAE,eAAe,EAChC,UAAU,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,IAAI,GACpD,OAAO,CAAC,iBAAiB,CAAC,CAgB5B"}
+{"version":3,"file":"entity-extractor.d.ts","sourceRoot":"","sources":["../../src/lib/entity-extractor.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,eAAe,EAAwB,MAAM,mBAAmB,CAAC;AAE/F,MAAM,WAAW,iBAAiB;IAChC,UAAU,EAAE,MAAM,CAAC;IACnB,cAAc,EAAE,MAAM,CAAC;IACvB,aAAa,EAAE,MAAM,CAAC;IACtB,cAAc,EAAE,MAAM,CAAC;IACvB,aAAa,EAAE,MAAM,CAAC;IACtB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED;;;;;GAKG;AACH,wBAAsB,oBAAoB,CACxC,UAAU,EAAE,mBAAmB,EAC/B,eAAe,EAAE,eAAe,EAChC,UAAU,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,IAAI,GACpD,OAAO,CAAC,iBAAiB,CAAC,CAe5B"}

package/dist/lib/entity-extractor.js

@@ -6,9 +6,8 @@ import { KnowledgeRepository, GraphRepository, IncrementalExtractor } from "@kno
  * @deprecated 新規コードは IncrementalExtractor を直接使用してください
  */
 export async function postIngestProcessing(repository, graphRepository, onProgress) {
-    const notes = repository.getAllNotes();
-    const allNoteIds = notes.map((n) => n.id);
-    const totalNotes = notes.length;
+    const allNoteIds = repository.getAllNoteIds();
+    const totalNotes = allNoteIds.length;
     const incrementalExtractor = new IncrementalExtractor(repository, graphRepository);
     const summary = await incrementalExtractor.process(allNoteIds, onProgress);
     return {

package/dist/lib/entity-extractor.js.map

@@ -1 +1 @@
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+{"version":3,"file":"entity-extractor.js","sourceRoot":"","sources":["../../src/lib/entity-extractor.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,eAAe,EAAE,oBAAoB,EAAE,MAAM,mBAAmB,CAAC;AAW/F;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,oBAAoB,CACxC,UAA+B,EAC/B,eAAgC,EAChC,UAAqD;IAErD,MAAM,UAAU,GAAG,UAAU,CAAC,aAAa,EAAE,CAAC;IAC9C,MAAM,UAAU,GAAG,UAAU,CAAC,MAAM,CAAC;IAErC,MAAM,oBAAoB,GAAG,IAAI,oBAAoB,CAAC,UAAU,EAAE,eAAe,CAAC,CAAC;IACnF,MAAM,OAAO,GAAG,MAAM,oBAAoB,CAAC,OAAO,CAAC,UAAU,EAAE,UAAU,CAAC,CAAC;IAE3E,OAAO;QACL,UAAU;QACV,cAAc,EAAE,OAAO,CAAC,cAAc;QACtC,aAAa,EAAE,OAAO,CAAC,aAAa;QACpC,cAAc,EAAE,OAAO,CAAC,cAAc;QACtC,aAAa,EAAE,OAAO,CAAC,aAAa;QACpC,MAAM,EAAE,OAAO,CAAC,MAAM;KACvB,CAAC;AACJ,CAAC"}

package/dist/lib/file-utils.d.ts

@@ -0,0 +1,5 @@
+export declare function readTextFileIfExists(filePath: string): string | null;
+export declare function backupFileIfExists(filePath: string): void;
+export declare function writeTextFileAtomically(filePath: string, content: string): void;
+export declare function writeTextFileExclusively(filePath: string, content: string): boolean;
+//# sourceMappingURL=file-utils.d.ts.map

package/dist/lib/file-utils.d.ts.map

@@ -0,0 +1 @@
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