@knowledgine/cli 0.2.1 → 0.3.0

package/dist/commands/capture.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"capture.d.ts","sourceRoot":"","sources":["../../src/commands/capture.ts"],"names":[],"mappings":"AAeA,MAAM,WAAW,qBAAqB;IACpC,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAmBD;;GAEG;AACH,wBAAsB,cAAc,CAClC,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,OAAO,EAAE,qBAAqB,GAC7B,OAAO,CAAC,IAAI,CAAC,CAEf;AAED,wBAAsB,iBAAiB,CACrC,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,OAAO,EAAE,qBAAqB,GAC7B,OAAO,CAAC,IAAI,CAAC,CA0Hf;AAED,MAAM,WAAW,kBAAkB;IACjC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,wBAAsB,kBAAkB,CAAC,OAAO,EAAE,kBAAkB,GAAG,OAAO,CAAC,IAAI,CAAC,CA2CnF;AAED,MAAM,WAAW,oBAAoB;IACnC,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,oBAAoB,CACxC,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,IAAI,CAAC,CA8Cf"}
+{"version":3,"file":"capture.d.ts","sourceRoot":"","sources":["../../src/commands/capture.ts"],"names":[],"mappings":"AAiBA,MAAM,WAAW,qBAAqB;IACpC,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAoBD;;GAEG;AACH,wBAAsB,cAAc,CAClC,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,OAAO,EAAE,qBAAqB,GAC7B,OAAO,CAAC,IAAI,CAAC,CAEf;AAED,wBAAsB,iBAAiB,CACrC,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,OAAO,EAAE,qBAAqB,GAC7B,OAAO,CAAC,IAAI,CAAC,CA2Hf;AAED,MAAM,WAAW,kBAAkB;IACjC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,wBAAsB,kBAAkB,CAAC,OAAO,EAAE,kBAAkB,GAAG,OAAO,CAAC,IAAI,CAAC,CAsCnF;AAED,MAAM,WAAW,oBAAoB;IACnC,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,oBAAoB,CACxC,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,IAAI,CAAC,CA8Cf"}

package/dist/commands/capture.js

@@ -1,9 +1,9 @@
 import { resolve } from "path";
 import { existsSync, readFileSync } from "fs";
-import { loadConfig, resolveDefaultPath, createDatabase, Migrator, KnowledgeRepository, ALL_MIGRATIONS, } from "@knowledgine/core";
+import { loadConfig, resolveDefaultPath, createDatabase, Migrator, KnowledgeRepository, GraphRepository, IncrementalExtractor, ALL_MIGRATIONS, } from "@knowledgine/core";
 import { EventWriter, sanitizeContent } from "@knowledgine/ingest";
 import { validateCaptureUrl } from "../lib/url-validator.js";
-import { createBox, createTable, colors, symbols } from "../lib/ui/index.js";
+import { createBox, createTable, symbols } from "../lib/ui/index.js";
 async function readStdin() {
     return new Promise((resolve, reject) => {
         const chunks = [];
@@ -17,7 +17,8 @@ function initDb(rootPath) {
     const db = createDatabase(config.dbPath);
     new Migrator(db, ALL_MIGRATIONS).migrate();
     const repository = new KnowledgeRepository(db);
-    return { db, repository };
+    const graphRepository = new GraphRepository(db);
+    return { db, repository, graphRepository };
 }
 /**
  * @deprecated Use captureAddCommand instead
@@ -110,11 +111,14 @@ export async function captureAddCommand(text, options) {
         },
     };
     // 5. DB書き込み
-    const { db, repository } = initDb(rootPath);
+    const { db, repository, graphRepository } = initDb(rootPath);
     try {
         const writer = new EventWriter(db, repository);
         const result = writer.writeEvent(event);
-        // 6. 出力
+        // 6. 増分抽出（capture したノートのみ対象）
+        const extractor = new IncrementalExtractor(repository, graphRepository);
+        await extractor.process([result.noteId]);
+        // 7. 出力
         const format = options.format ?? "plain";
         if (format === "json") {
             console.log(JSON.stringify({
@@ -129,10 +133,7 @@ export async function captureAddCommand(text, options) {
             }));
         }
         else {
-            const lines = [
-                `${symbols.success} Captured (id: ${result.id})`,
-                `  Title: ${title}`,
-            ];
+            const lines = [`${symbols.success} Captured (id: ${result.id})`, `  Title: ${title}`];
             if (tags.length > 0) {
                 lines.push(`  Tags:  ${tags.join(", ")}`);
             }
@@ -177,12 +178,7 @@ export async function captureListCommand(options) {
                 console.error("No captured notes found.");
                 return;
             }
-            const rows = notes.map((n) => [
-                String(n.id),
-                n.title,
-                n.file_path,
-                n.created_at,
-            ]);
+            const rows = notes.map((n) => [String(n.id), n.title, n.file_path, n.created_at]);
             console.error(createTable({ head: ["ID", "Title", "Source", "Created"], rows }));
         }
     }

package/dist/commands/capture.js.map

@@ -1 +1 @@
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+{"version":3,"file":"capture.js","sourceRoot":"","sources":["../../src/commands/capture.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAC;AAC/B,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,IAAI,CAAC;AAC9C,OAAO,EACL,UAAU,EACV,kBAAkB,EAClB,cAAc,EACd,QAAQ,EACR,mBAAmB,EACnB,eAAe,EACf,oBAAoB,EACpB,cAAc,GACf,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,WAAW,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAEnE,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAC7D,OAAO,EAAE,SAAS,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAWrE,KAAK,UAAU,SAAS;IACtB,OAAO,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;QACrC,MAAM,MAAM,GAAa,EAAE,CAAC;QAC5B,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,KAAa,EAAE,EAAE,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;QAChE,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,KAAK,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QAChF,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IACpC,CAAC,CAAC,CAAC;AACL,CAAC;AAED,SAAS,MAAM,CAAC,QAAgB;IAC9B,MAAM,MAAM,GAAG,UAAU,CAAC,QAAQ,CAAC,CAAC;IACpC,MAAM,EAAE,GAAG,cAAc,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACzC,IAAI,QAAQ,CAAC,EAAE,EAAE,cAAc,CAAC,CAAC,OAAO,EAAE,CAAC;IAC3C,MAAM,UAAU,GAAG,IAAI,mBAAmB,CAAC,EAAE,CAAC,CAAC;IAC/C,MAAM,eAAe,GAAG,IAAI,eAAe,CAAC,EAAE,CAAC,CAAC;IAChD,OAAO,EAAE,EAAE,EAAE,UAAU,EAAE,eAAe,EAAE,CAAC;AAC7C,CAAC;AAED;;GAEG;AACH,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,IAAwB,EACxB,OAA8B;IAE9B,OAAO,iBAAiB,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;AAC1C,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,IAAwB,EACxB,OAA8B;IAE9B,WAAW;IACX,MAAM,QAAQ,GAAG,kBAAkB,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IAClD,MAAM,cAAc,GAAG,OAAO,CAAC,QAAQ,EAAE,cAAc,CAAC,CAAC;IACzD,IAAI,CAAC,UAAU,CAAC,cAAc,CAAC,EAAE,CAAC;QAChC,OAAO,CAAC,KAAK,CAAC,8EAA8E,CAAC,CAAC;QAC9F,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;QACrB,OAAO;IACT,CAAC;IAED,iBAAiB;IACjB,IAAI,OAAe,CAAC;IACpB,IAAI,SAAiB,CAAC;IACtB,IAAI,UAAkB,CAAC;IAEvB,IAAI,IAAI,EAAE,CAAC;QACT,OAAO,GAAG,IAAI,CAAC;QACf,SAAS,GAAG,gBAAgB,CAAC;QAC7B,UAAU,GAAG,MAAM,CAAC;IACtB,CAAC;SAAM,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;QACvB,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,kBAAkB,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;YAC/C,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;YAC1C,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;gBACjB,OAAO,CAAC,KAAK,CAAC,+BAA+B,QAAQ,CAAC,MAAM,IAAI,QAAQ,CAAC,UAAU,EAAE,CAAC,CAAC;gBACvF,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;gBACrB,OAAO;YACT,CAAC;YACD,OAAO,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;YAChC,SAAS,GAAG,MAAM,CAAC,IAAI,CAAC;YACxB,UAAU,GAAG,KAAK,CAAC;QACrB,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,OAAO,CAAC,KAAK,CAAC,UAAU,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;YAClF,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;YACrB,OAAO;QACT,CAAC;IACH,CAAC;SAAM,IAAI,OAAO,CAAC,IAAI,EAAE,CAAC;QACxB,MAAM,QAAQ,GAAG,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;QACvC,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC1B,OAAO,CAAC,KAAK,CAAC,0BAA0B,QAAQ,EAAE,CAAC,CAAC;YACpD,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;YACrB,OAAO;QACT,CAAC;QACD,OAAO,GAAG,YAAY,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;QAC1C,SAAS,GAAG,UAAU,QAAQ,EAAE,CAAC;QACjC,UAAU,GAAG,MAAM,CAAC;IACtB,CAAC;SAAM,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC;QAChC,OAAO,GAAG,MAAM,SAAS,EAAE,CAAC;QAC5B,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,CAAC;YACpB,OAAO,CAAC,KAAK,CAAC,2EAA2E,CAAC,CAAC;YAC3F,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;YACrB,OAAO;QACT,CAAC;QACD,SAAS,GAAG,iBAAiB,CAAC;QAC9B,UAAU,GAAG,OAAO,CAAC;IACvB,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,KAAK,CAAC,2EAA2E,CAAC,CAAC;QAC3F,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;QACrB,OAAO;IACT,CAAC;IAED,aAAa;IACb,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,IAAI,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC;IAC/E,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI;QACvB,CAAC,CAAC,OAAO,CAAC,IAAI;aACT,KAAK,CAAC,GAAG,CAAC;aACV,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;aACpB,MAAM,CAAC,OAAO,CAAC;QACpB,CAAC,CAAC,EAAE,CAAC;IAEP,uBAAuB;IACvB,MAAM,KAAK,GAAoB;QAC7B,SAAS;QACT,SAAS,EAAE,SAAS;QACpB,KAAK;QACL,OAAO,EAAE,eAAe,CAAC,OAAO,CAAC;QACjC,SAAS,EAAE,IAAI,IAAI,EAAE;QACrB,QAAQ,EAAE;YACR,YAAY,EAAE,SAAS;YACvB,QAAQ,EAAE,WAAW,IAAI,CAAC,GAAG,EAAE,EAAE;YACjC,IAAI,EAAE,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,SAAS;SACzC;KACF,CAAC;IAEF,YAAY;IACZ,MAAM,EAAE,EAAE,EAAE,UAAU,EAAE,eAAe,EAAE,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC;IAC7D,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,IAAI,WAAW,CAAC,EAAE,EAAE,UAAU,CAAC,CAAC;QAC/C,MAAM,MAAM,GAAG,MAAM,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC;QAExC,6BAA6B;QAC7B,MAAM,SAAS,GAAG,IAAI,oBAAoB,CAAC,UAAU,EAAE,eAAe,CAAC,CAAC;QACxE,MAAM,SAAS,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;QAEzC,QAAQ;QACR,MAAM,MAAM,GAAG,OAAO,CAAC,MAAM,IAAI,OAAO,CAAC;QACzC,IAAI,MAAM,KAAK,MAAM,EAAE,CAAC;YACtB,OAAO,CAAC,GAAG,CACT,IAAI,CAAC,SAAS,CAAC;gBACb,EAAE,EAAE,IAAI;gBACR,OAAO,EAAE,SAAS;gBAClB,MAAM,EAAE;oBACN,EAAE,EAAE,MAAM,CAAC,EAAE;oBACb,KAAK;oBACL,IAAI;oBACJ,SAAS;iBACV;aACF,CAAC,CACH,CAAC;QACJ,CAAC;aAAM,CAAC;YACN,MAAM,KAAK,GAAG,CAAC,GAAG,OAAO,CAAC,OAAO,kBAAkB,MAAM,CAAC,EAAE,GAAG,EAAE,YAAY,KAAK,EAAE,CAAC,CAAC;YACtF,IAAI,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACpB,KAAK,CAAC,IAAI,CAAC,YAAY,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YAC5C,CAAC;YACD,KAAK,CAAC,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package/dist/commands/deprecation-check.d.ts

@@ -0,0 +1,7 @@
+export interface DeprecationCheckOptions {
+    path?: string;
+    apply?: boolean;
+    threshold?: string;
+}
+export declare function deprecationCheckCommand(options: DeprecationCheckOptions): Promise<void>;
+//# sourceMappingURL=deprecation-check.d.ts.map

package/dist/commands/deprecation-check.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/deprecation-check.js

@@ -0,0 +1,75 @@
+import { loadConfig, resolveDefaultPath, createDatabase, Migrator, KnowledgeRepository, ALL_MIGRATIONS, } from "@knowledgine/core";
+/**
+ * 簡易テキスト類似度（Jaccard係数）でdeprecation候補を検出する
+ */
+function jaccardSimilarity(a, b) {
+    const tokenize = (text) => new Set(text
+        .toLowerCase()
+        .split(/\W+/)
+        .filter((t) => t.length > 2));
+    const setA = tokenize(a);
+    const setB = tokenize(b);
+    if (setA.size === 0 || setB.size === 0)
+        return 0;
+    let intersection = 0;
+    for (const token of setA) {
+        if (setB.has(token))
+            intersection++;
+    }
+    const union = setA.size + setB.size - intersection;
+    return union === 0 ? 0 : intersection / union;
+}
+export async function deprecationCheckCommand(options) {
+    const threshold = parseFloat(options.threshold ?? "0.8");
+    if (isNaN(threshold) || threshold < 0 || threshold > 1) {
+        console.error("Error: --threshold must be a number between 0 and 1");
+        process.exit(1);
+    }
+    const rootPath = resolveDefaultPath(options.path);
+    const config = loadConfig(rootPath);
+    const db = createDatabase(config.dbPath);
+    new Migrator(db, ALL_MIGRATIONS).migrate();
+    const repository = new KnowledgeRepository(db);
+    try {
+        const allNotes = repository.getAllNotes().filter((n) => !n.deprecated);
+        const candidates = [];
+        // O(n²) comparison — intended for small knowledge bases
+        // For large bases, use findNotesByTimeProximity() as pre-filter
+        for (let i = 0; i < allNotes.length; i++) {
+            for (let j = i + 1; j < allNotes.length; j++) {
+                const older = allNotes[i];
+                const newer = allNotes[j];
+                // newer note (higher id / later created_at) supersedes older
+                const newerNote = newer.created_at > older.created_at ? newer : older;
+                const olderNote = newer.created_at > older.created_at ? older : newer;
+                const sim = jaccardSimilarity(`${olderNote.title} ${olderNote.content}`, `${newerNote.title} ${newerNote.content}`);
+                if (sim >= threshold) {
+                    candidates.push({ note: olderNote, supersededBy: newerNote, similarity: sim });
+                }
+            }
+        }
+        if (candidates.length === 0) {
+            console.log("No deprecation candidates found.");
+            return;
+        }
+        console.log(`Found ${candidates.length} deprecation candidate(s) (threshold: ${threshold}):\n`);
+        for (const c of candidates) {
+            console.log(`  [${c.note.id}] "${c.note.title}" → superseded by [${c.supersededBy.id}] "${c.supersededBy.title}" (similarity: ${c.similarity.toFixed(3)})`);
+        }
+        if (options.apply) {
+            console.log("\nApplying deprecation...");
+            for (const c of candidates) {
+                db.prepare("UPDATE knowledge_notes SET deprecated = 1, deprecation_reason = ? WHERE id = ?").run(`Superseded by note ${c.supersededBy.id}: ${c.supersededBy.title}`, c.note.id);
+                console.log(`  Deprecated note ${c.note.id}: "${c.note.title}"`);
+            }
+            console.log("Done.");
+        }
+        else {
+            console.log("\nRun with --apply to apply these changes.");
+        }
+    }
+    finally {
+        db.close();
+    }
+}
+//# sourceMappingURL=deprecation-check.js.map

package/dist/commands/deprecation-check.js.map

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package/dist/commands/explain.d.ts

@@ -0,0 +1,10 @@
+import type { Command } from "commander";
+export interface ExplainCommandOptions {
+    entity?: string;
+    noteId?: string;
+    timeline?: boolean;
+    format?: string;
+    path?: string;
+}
+export declare function registerExplainCommand(program: Command): void;
+//# sourceMappingURL=explain.d.ts.map

package/dist/commands/explain.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/explain.js

@@ -0,0 +1,252 @@
+import { resolve } from "path";
+import { existsSync } from "fs";
+import { loadConfig, resolveDefaultPath, createDatabase, Migrator, ALL_MIGRATIONS, KnowledgeRepository, GraphRepository, KnowledgeService, ProvenanceRepository, CausalLinkDetector, } from "@knowledgine/core";
+function formatDate(iso) {
+    return iso.slice(0, 10);
+}
+function formatPlain(entityName, entityGraph, provenance) {
+    const lines = [];
+    lines.push(`Entity: ${entityGraph.name}`);
+    lines.push(`Type: ${entityGraph.entityType}`);
+    if (entityGraph.description) {
+        lines.push(`Description: ${entityGraph.description}`);
+    }
+    lines.push("");
+    const noteCount = entityGraph.linkedNotes.length;
+    const relationCount = entityGraph.outgoingRelations.length + entityGraph.incomingRelations.length;
+    lines.push(`Related notes: ${noteCount}`);
+    lines.push(`Graph relations: ${relationCount} ${relationCount === 1 ? "entity" : "entities"} connected`);
+    lines.push("");
+    if (provenance.length > 0) {
+        lines.push("Provenance:");
+        const sorted = [...provenance].sort((a, b) => new Date(a.generatedAt).getTime() - new Date(b.generatedAt).getTime());
+        for (const p of sorted) {
+            const msg = p.metadata && typeof p.metadata["message"] === "string" ? p.metadata["message"] : "";
+            const agent = p.agent ?? p.activityType;
+            lines.push(`  ${formatDate(p.generatedAt)} [${p.activityType}] ${agent}${msg ? ` → ${msg}` : ""}`);
+        }
+        lines.push("");
+    }
+    // Observations
+    if (entityGraph.observations.length > 0) {
+        lines.push(`Observations: ${entityGraph.observations.length} recorded`);
+    }
+    return lines.join("\n");
+}
+function formatCausalLinks(noteId, repository) {
+    const links = repository.getLinksForNote(noteId);
+    if (links.length === 0)
+        return "";
+    const lines = ["Causal Links:"];
+    for (const link of links) {
+        const sourceNote = repository.getNoteById(link.sourceNoteId);
+        const targetNote = repository.getNoteById(link.targetNoteId);
+        const sourcePath = sourceNote?.file_path ?? `note#${link.sourceNoteId}`;
+        const targetPath = targetNote?.file_path ?? `note#${link.targetNoteId}`;
+        lines.push(`  ${sourcePath} -> ${targetPath} (${link.linkType})`);
+    }
+    return lines.join("\n");
+}
+function formatTimeline(entityName, entityGraph, provenance, causalLinksText) {
+    const lines = [];
+    lines.push(`Timeline for "${entityGraph.name}":`);
+    lines.push("");
+    const sorted = [...provenance].sort((a, b) => new Date(a.generatedAt).getTime() - new Date(b.generatedAt).getTime());
+    for (const p of sorted) {
+        const msg = p.metadata && typeof p.metadata["message"] === "string" ? p.metadata["message"] : "";
+        const source = p.sourceUri ? ` ${p.sourceUri}` : "";
+        lines.push(`  ${formatDate(p.generatedAt)} ✦ [${p.activityType}]${source}`);
+        if (msg) {
+            lines.push(`    → "${msg}"`);
+        }
+    }
+    if (sorted.length === 0) {
+        lines.push("  (No provenance records)");
+    }
+    lines.push("");
+    const noteCount = entityGraph.linkedNotes.length;
+    const relationCount = entityGraph.outgoingRelations.length + entityGraph.incomingRelations.length;
+    const obsCount = entityGraph.observations.length;
+    lines.push(`  Current: ${noteCount} notes | ${relationCount} entity relations | ${obsCount} observations`);
+    if (causalLinksText) {
+        lines.push("");
+        lines.push(causalLinksText);
+    }
+    return lines.join("\n");
+}
+function formatJson(entityGraph, provenance, relatedResult) {
+    const output = {
+        entity: {
+            name: entityGraph.name,
+            type: entityGraph.entityType,
+            description: entityGraph.description,
+            createdAt: entityGraph.createdAt,
+        },
+        graph: {
+            observations: entityGraph.observations,
+            relations: [
+                ...entityGraph.outgoingRelations.map((r) => ({
+                    direction: "outgoing",
+                    relationType: r.relationType,
+                    target: r.targetEntity,
+                })),
+                ...entityGraph.incomingRelations.map((r) => ({
+                    direction: "incoming",
+                    relationType: r.relationType,
+                    source: r.sourceEntity,
+                })),
+            ],
+        },
+        provenance,
+        related: relatedResult
+            ? {
+                notes: relatedResult.relatedNotes,
+                psp: relatedResult.problemSolutionPairs,
+            }
+            : {
+                notes: entityGraph.linkedNotes,
+                psp: [],
+            },
+    };
+    return JSON.stringify(output, null, 2);
+}
+async function explainAction(query, options) {
+    const rootPath = resolveDefaultPath(options.path);
+    const knowledgineDir = resolve(rootPath, ".knowledgine");
+    if (!existsSync(knowledgineDir)) {
+        console.error('Not initialized. Run "knowledgine init --path <dir>" first.');
+        process.exitCode = 1;
+        return;
+    }
+    const format = options.format ?? "plain";
+    if (!["json", "yaml", "plain"].includes(format)) {
+        console.error("Error: --format must be one of: json, yaml, plain");
+        process.exitCode = 1;
+        return;
+    }
+    const config = loadConfig(rootPath);
+    const db = createDatabase(config.dbPath);
+    try {
+        new Migrator(db, ALL_MIGRATIONS).migrate();
+        const repository = new KnowledgeRepository(db);
+        const graphRepository = new GraphRepository(db);
+        const service = new KnowledgeService({ repository, rootPath, graphRepository });
+        const provenanceRepo = new ProvenanceRepository(db);
+        // --note-id モード
+        if (options.noteId !== undefined) {
+            const noteId = parseInt(options.noteId, 10);
+            if (isNaN(noteId) || noteId < 1) {
+                console.error("Error: --note-id must be a positive integer");
+                process.exitCode = 1;
+                return;
+            }
+            const result = await service.findRelated({ noteId });
+            if (format === "json") {
+                console.log(JSON.stringify({ noteId, related: result }, null, 2));
+            }
+            else {
+                const lines = [];
+                lines.push(`Note ID: ${noteId}`);
+                lines.push("");
+                if (result.graphRelations.length > 0) {
+                    lines.push("Knowledge Graph Relations:");
+                    for (const g of result.graphRelations) {
+                        lines.push(`  [${g.entityType}] ${g.name}`);
+                    }
+                    lines.push("");
+                }
+                if (result.relatedNotes.length > 0) {
+                    lines.push("Related Notes:");
+                    for (const n of result.relatedNotes) {
+                        lines.push(`  [${n.score.toFixed(2)}] ${n.filePath}  ${n.title}`);
+                    }
+                    lines.push("");
+                }
+                if (result.problemSolutionPairs.length > 0) {
+                    lines.push("Problem-Solution Pairs:");
+                    for (const p of result.problemSolutionPairs) {
+                        lines.push(`  [confidence: ${p.confidence.toFixed(2)}] ${p.problemPattern} → ${p.solutionPattern}`);
+                    }
+                }
+                console.error(lines.join("\n"));
+            }
+            return;
+        }
+        // エンティティ名の解決
+        let entityName;
+        if (options.entity !== undefined) {
+            // --entity オプション: sync
+            entityName = options.entity;
+        }
+        else if (query !== undefined) {
+            // [query] 引数: searchEntities (sync) → 最初の結果を使用
+            const searchResult = service.searchEntities({ query });
+            if (searchResult.totalResults === 0 || searchResult.entities.length === 0) {
+                console.error(`Entity '${query}' not found in knowledge base.`);
+                console.error(`Try: knowledgine explain --entity <name> --path <dir>`);
+                process.exitCode = 1;
+                return;
+            }
+            entityName = searchResult.entities[0].name;
+        }
+        else {
+            // 引数もオプションもない
+            console.error("Error: Provide a query argument, --entity <name>, or --note-id <id>");
+            console.error("Usage: knowledgine explain [query] [--entity <name>] [--note-id <id>]");
+            process.exitCode = 1;
+            return;
+        }
+        // getEntityGraph (sync)
+        const entityGraph = service.getEntityGraph({ entityName });
+        if (!entityGraph) {
+            console.error(`Entity '${entityName}' not found in knowledge base.`);
+            console.error(`Try: knowledgine explain --entity <name> --path <dir>`);
+            process.exitCode = 1;
+            return;
+        }
+        // Provenance 取得
+        const provenance = provenanceRepo.getByEntityUri(`entity://${entityName}`);
+        // 出力
+        if (format === "json") {
+            console.log(formatJson(entityGraph, provenance));
+        }
+        else if (options.timeline) {
+            // 因果リンク検出・表示
+            const causalDetector = new CausalLinkDetector(repository);
+            causalDetector.detectAll();
+            // エンティティに紐づくノートの因果リンクを表示
+            const linkedNoteIds = entityGraph.linkedNotes
+                .map((n) => (typeof n === "object" && "id" in n ? n.id : null))
+                .filter((id) => id !== null);
+            const causalLinksText = linkedNoteIds.length > 0
+                ? linkedNoteIds
+                    .map((id) => formatCausalLinks(id, repository))
+                    .filter((s) => s.length > 0)
+                    .join("\n")
+                : "";
+            console.error(formatTimeline(entityName, entityGraph, provenance, causalLinksText || undefined));
+        }
+        else {
+            console.error(formatPlain(entityName, entityGraph, provenance));
+        }
+    }
+    catch (error) {
+        console.error(`Error: ${error instanceof Error ? error.message : String(error)}`);
+        process.exitCode = 1;
+    }
+    finally {
+        db.close();
+    }
+}
+export function registerExplainCommand(program) {
+    program
+        .command("explain [query]")
+        .description("Explain entity background with Provenance-backed timeline")
+        .option("--entity <name>", "Entity name to explain")
+        .option("--note-id <id>", "Note ID to explain")
+        .option("--timeline", "Show chronological timeline view")
+        .option("--format <format>", "Output format: json, yaml, plain", "plain")
+        .option("--path <dir>", "Project root path")
+        .action(explainAction);
+}
+//# sourceMappingURL=explain.js.map

package/dist/commands/explain.js.map

@@ -0,0 +1 @@
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package/dist/commands/feedback-suggest.d.ts

@@ -0,0 +1,8 @@
+import type { Command } from "commander";
+export interface FeedbackSuggestOptions {
+    useful?: boolean;
+    notUseful?: boolean;
+    path?: string;
+}
+export declare function registerFeedbackSuggestCommand(program: Command): void;
+//# sourceMappingURL=feedback-suggest.d.ts.map

package/dist/commands/feedback-suggest.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"feedback-suggest.d.ts","sourceRoot":"","sources":["../../src/commands/feedback-suggest.ts"],"names":[],"mappings":"AAQA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEzC,MAAM,WAAW,sBAAsB;IACrC,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AA2CD,wBAAgB,8BAA8B,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAQrE"}

package/dist/commands/feedback-suggest.js

@@ -0,0 +1,43 @@
+import { loadConfig, resolveDefaultPath, createDatabase, Migrator, KnowledgeRepository, ALL_MIGRATIONS, } from "@knowledgine/core";
+async function feedbackSuggestAction(noteIdStr, options) {
+    const noteId = parseInt(noteIdStr, 10);
+    if (isNaN(noteId) || noteId <= 0) {
+        console.error(`Error: Invalid note ID "${noteIdStr}". Must be a positive integer.`);
+        process.exitCode = 1;
+        return;
+    }
+    if (!options.useful && !options.notUseful) {
+        console.error("Error: Specify either --useful or --not-useful to record feedback.");
+        process.exitCode = 1;
+        return;
+    }
+    const isUseful = Boolean(options.useful);
+    const rootPath = resolveDefaultPath(options.path);
+    const config = loadConfig(rootPath);
+    const db = createDatabase(config.dbPath);
+    try {
+        new Migrator(db, ALL_MIGRATIONS).migrate();
+        const repository = new KnowledgeRepository(db);
+        const note = repository.getNoteById(noteId);
+        if (!note) {
+            console.error(`Error: Note not found (ID: ${noteId}).`);
+            process.exitCode = 1;
+            return;
+        }
+        repository.saveSuggestFeedback(noteId, "", isUseful);
+        console.log(`Feedback saved for note ${noteId} ("${note.title}").`);
+    }
+    finally {
+        db.close();
+    }
+}
+export function registerFeedbackSuggestCommand(program) {
+    program
+        .command("feedback-suggest <note-id>")
+        .description("Provide feedback on a suggest result")
+        .option("--useful", "Mark this suggestion as useful")
+        .option("--not-useful", "Mark this suggestion as not useful")
+        .option("--path <dir>", "Project root path")
+        .action(feedbackSuggestAction);
+}
+//# sourceMappingURL=feedback-suggest.js.map

package/dist/commands/feedback-suggest.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"feedback-suggest.js","sourceRoot":"","sources":["../../src/commands/feedback-suggest.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,UAAU,EACV,kBAAkB,EAClB,cAAc,EACd,QAAQ,EACR,mBAAmB,EACnB,cAAc,GACf,MAAM,mBAAmB,CAAC;AAS3B,KAAK,UAAU,qBAAqB,CAClC,SAAiB,EACjB,OAA+B;IAE/B,MAAM,MAAM,GAAG,QAAQ,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;IACvC,IAAI,KAAK,CAAC,MAAM,CAAC,IAAI,MAAM,IAAI,CAAC,EAAE,CAAC;QACjC,OAAO,CAAC,KAAK,CAAC,2BAA2B,SAAS,gCAAgC,CAAC,CAAC;QACpF,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;QACrB,OAAO;IACT,CAAC;IAED,IAAI,CAAC,OAAO,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC;QAC1C,OAAO,CAAC,KAAK,CAAC,oEAAoE,CAAC,CAAC;QACpF,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;QACrB,OAAO;IACT,CAAC;IAED,MAAM,QAAQ,GAAG,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;IAEzC,MAAM,QAAQ,GAAG,kBAAkB,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IAClD,MAAM,MAAM,GAAG,UAAU,CAAC,QAAQ,CAAC,CAAC;IACpC,MAAM,EAAE,GAAG,cAAc,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAEzC,IAAI,CAAC;QACH,IAAI,QAAQ,CAAC,EAAE,EAAE,cAAc,CAAC,CAAC,OAAO,EAAE,CAAC;QAC3C,MAAM,UAAU,GAAG,IAAI,mBAAmB,CAAC,EAAE,CAAC,CAAC;QAE/C,MAAM,IAAI,GAAG,UAAU,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QAC5C,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,OAAO,CAAC,KAAK,CAAC,8BAA8B,MAAM,IAAI,CAAC,CAAC;YACxD,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;YACrB,OAAO;QACT,CAAC;QAED,UAAU,CAAC,mBAAmB,CAAC,MAAM,EAAE,EAAE,EAAE,QAAQ,CAAC,CAAC;QACrD,OAAO,CAAC,GAAG,CAAC,2BAA2B,MAAM,MAAM,IAAI,CAAC,KAAK,KAAK,CAAC,CAAC;IACtE,CAAC;YAAS,CAAC;QACT,EAAE,CAAC,KAAK,EAAE,CAAC;IACb,CAAC;AACH,CAAC;AAED,MAAM,UAAU,8BAA8B,CAAC,OAAgB;IAC7D,OAAO;SACJ,OAAO,CAAC,4BAA4B,CAAC;SACrC,WAAW,CAAC,sCAAsC,CAAC;SACnD,MAAM,CAAC,UAAU,EAAE,gCAAgC,CAAC;SACpD,MAAM,CAAC,cAAc,EAAE,oCAAoC,CAAC;SAC5D,MAAM,CAAC,cAAc,EAAE,mBAAmB,CAAC;SAC3C,MAAM,CAAC,qBAAqB,CAAC,CAAC;AACnC,CAAC"}

package/dist/commands/feedback.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"feedback.d.ts","sourceRoot":"","sources":["../../src/commands/feedback.ts"],"names":[],"mappings":"AAuCA,MAAM,WAAW,mBAAmB;IAClC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,mBAAmB,CAAC,OAAO,EAAE,mBAAmB,GAAG,OAAO,CAAC,IAAI,CAAC,CAmBrF;AAED,MAAM,WAAW,oBAAoB;IACnC,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,oBAAoB,CACxC,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,IAAI,CAAC,CAkBf;AAED,MAAM,WAAW,sBAAsB;IACrC,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,sBAAsB,CAC1C,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,sBAAsB,GAC9B,OAAO,CAAC,IAAI,CAAC,CAkBf;AAED,MAAM,WAAW,oBAAoB;IACnC,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,oBAAoB,CAAC,OAAO,EAAE,oBAAoB,GAAG,OAAO,CAAC,IAAI,CAAC,CAUvF;AAID,MAAM,WAAW,qBAAqB;IACpC,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,qBAAqB,CAAC,OAAO,EAAE,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CAgCzF"}
+{"version":3,"file":"feedback.d.ts","sourceRoot":"","sources":["../../src/commands/feedback.ts"],"names":[],"mappings":"AAuCA,MAAM,WAAW,mBAAmB;IAClC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,mBAAmB,CAAC,OAAO,EAAE,mBAAmB,GAAG,OAAO,CAAC,IAAI,CAAC,CAcrF;AAED,MAAM,WAAW,oBAAoB;IACnC,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,oBAAoB,CACxC,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,IAAI,CAAC,CAoBf;AAED,MAAM,WAAW,sBAAsB;IACrC,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,sBAAsB,CAC1C,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,sBAAsB,GAC9B,OAAO,CAAC,IAAI,CAAC,CAkBf;AAED,MAAM,WAAW,oBAAoB;IACnC,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,oBAAoB,CAAC,OAAO,EAAE,oBAAoB,GAAG,OAAO,CAAC,IAAI,CAAC,CAUvF;AAID,MAAM,WAAW,qBAAqB;IACpC,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,qBAAqB,CAAC,OAAO,EAAE,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CAgCzF"}

package/dist/commands/feedback.js

@@ -30,12 +30,7 @@ export async function feedbackListCommand(options) {
         console.log("No feedback records found.");
         return;
     }
-    const rows = records.map((r) => [
-        String(r.id),
-        r.errorType,
-        r.entityName,
-        statusColor(r.status),
-    ]);
+    const rows = records.map((r) => [String(r.id), r.errorType, r.entityName, statusColor(r.status)]);
     console.log(createTable({ head: ["ID", "Error Type", "Entity", "Status"], rows }));
 }
 export async function feedbackApplyCommand(idStr, options) {

package/dist/commands/feedback.js.map

@@ -1 +1 @@
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package/dist/commands/ingest.d.ts.map

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