@know-graph/core 0.4.0

package/dist/coverage/__tests__/fixtures/mixed-project/unannotated.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"unannotated.d.ts","sourceRoot":"","sources":["../../../../../src/coverage/__tests__/fixtures/mixed-project/unannotated.ts"],"names":[],"mappings":"AAAA,wBAAgB,OAAO,IAAI,MAAM,CAEhC"}

package/dist/coverage/__tests__/fixtures/mixed-project/unannotated.js

@@ -0,0 +1,4 @@
+export function goodbye() {
+    return 'goodbye';
+}
+//# sourceMappingURL=unannotated.js.map

package/dist/coverage/__tests__/fixtures/mixed-project/unannotated.js.map

@@ -0,0 +1 @@
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package/dist/coverage/coverage-calculator.d.ts

@@ -0,0 +1,3 @@
+import type { CoverageOptions, CoverageResult } from './types.js';
+export declare function calculateCoverage(options: CoverageOptions): CoverageResult;
+//# sourceMappingURL=coverage-calculator.d.ts.map

package/dist/coverage/coverage-calculator.d.ts.map

@@ -0,0 +1 @@
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package/dist/coverage/coverage-calculator.js

@@ -0,0 +1,204 @@
+/**
+ * @knowgraph
+ * type: module
+ * description: Pure functions to calculate documentation coverage by scanning files for @knowgraph annotations
+ * owner: knowgraph-core
+ * status: experimental
+ * tags: [coverage, calculator, scanner]
+ * context:
+ *   business_goal: Measure what percentage of parseable files have @knowgraph annotations
+ *   domain: coverage-engine
+ */
+import { readFileSync, readdirSync, statSync } from 'node:fs';
+import { join, extname, relative, dirname } from 'node:path';
+import { createDefaultRegistry } from '../parsers/registry.js';
+const SKIP_DIRS = new Set([
+    'node_modules',
+    '.git',
+    'dist',
+    'build',
+    '__pycache__',
+    '.venv',
+    'venv',
+    'coverage',
+    '.next',
+    '.tox',
+]);
+const PARSEABLE_EXTENSIONS = new Set([
+    '.py',
+    '.pyi',
+    '.ts',
+    '.tsx',
+    '.js',
+    '.jsx',
+    '.mts',
+    '.cts',
+]);
+const EXTENSION_TO_LANGUAGE = {
+    '.py': 'python',
+    '.pyi': 'python',
+    '.ts': 'typescript',
+    '.tsx': 'typescript',
+    '.js': 'javascript',
+    '.jsx': 'javascript',
+    '.mts': 'typescript',
+    '.cts': 'typescript',
+};
+function collectParseableFiles(rootDir, exclude) {
+    const results = [];
+    function walk(dir) {
+        let entries;
+        try {
+            entries = readdirSync(dir);
+        }
+        catch {
+            return;
+        }
+        for (const entry of entries) {
+            if (entry.startsWith('.') || exclude.has(entry))
+                continue;
+            const fullPath = join(dir, entry);
+            try {
+                const stat = statSync(fullPath);
+                if (stat.isDirectory()) {
+                    walk(fullPath);
+                }
+                else if (stat.isFile() && PARSEABLE_EXTENSIONS.has(extname(entry))) {
+                    results.push(fullPath);
+                }
+            }
+            catch {
+                // Skip inaccessible files
+            }
+        }
+    }
+    walk(rootDir);
+    return results;
+}
+function analyzeFile(filePath, rootDir, registry) {
+    const ext = extname(filePath);
+    const language = EXTENSION_TO_LANGUAGE[ext] ?? 'unknown';
+    const relPath = relative(rootDir, filePath);
+    try {
+        const content = readFileSync(filePath, 'utf-8');
+        const results = registry.parseFile(content, filePath);
+        return {
+            filePath: relPath,
+            language,
+            hasAnnotation: results.length > 0,
+            entityCount: results.length,
+        };
+    }
+    catch {
+        return {
+            filePath: relPath,
+            language,
+            hasAnnotation: false,
+            entityCount: 0,
+        };
+    }
+}
+function computePercentage(annotated, total) {
+    if (total === 0)
+        return 0;
+    return Math.round((annotated / total) * 1000) / 10;
+}
+function buildBreakdown(files, keyFn) {
+    const groups = new Map();
+    for (const file of files) {
+        const key = keyFn(file);
+        const existing = groups.get(key) ?? { annotatedCount: 0, totalCount: 0 };
+        groups.set(key, {
+            annotatedCount: existing.annotatedCount + (file.hasAnnotation ? 1 : 0),
+            totalCount: existing.totalCount + 1,
+        });
+    }
+    return [...groups.entries()]
+        .map(([category, { annotatedCount, totalCount }]) => ({
+        category,
+        annotatedCount,
+        totalCount,
+        percentage: computePercentage(annotatedCount, totalCount),
+    }))
+        .sort((a, b) => b.percentage - a.percentage);
+}
+function buildOwnerBreakdown(files, rootDir, registry) {
+    const ownerMap = new Map();
+    for (const file of files) {
+        if (!file.hasAnnotation) {
+            const key = '(no owner)';
+            const existing = ownerMap.get(key) ?? {
+                annotatedCount: 0,
+                totalCount: 0,
+            };
+            ownerMap.set(key, {
+                annotatedCount: existing.annotatedCount,
+                totalCount: existing.totalCount + 1,
+            });
+            continue;
+        }
+        const absPath = join(rootDir, file.filePath);
+        try {
+            const content = readFileSync(absPath, 'utf-8');
+            const results = registry.parseFile(content, absPath);
+            const owners = new Set();
+            for (const result of results) {
+                owners.add(result.metadata.owner ?? '(no owner)');
+            }
+            for (const owner of owners) {
+                const existing = ownerMap.get(owner) ?? {
+                    annotatedCount: 0,
+                    totalCount: 0,
+                };
+                ownerMap.set(owner, {
+                    annotatedCount: existing.annotatedCount + 1,
+                    totalCount: existing.totalCount + 1,
+                });
+            }
+        }
+        catch {
+            const key = '(no owner)';
+            const existing = ownerMap.get(key) ?? {
+                annotatedCount: 0,
+                totalCount: 0,
+            };
+            ownerMap.set(key, {
+                annotatedCount: existing.annotatedCount,
+                totalCount: existing.totalCount + 1,
+            });
+        }
+    }
+    return [...ownerMap.entries()]
+        .map(([category, { annotatedCount, totalCount }]) => ({
+        category,
+        annotatedCount,
+        totalCount,
+        percentage: computePercentage(annotatedCount, totalCount),
+    }))
+        .sort((a, b) => b.percentage - a.percentage);
+}
+export function calculateCoverage(options) {
+    const { rootDir, exclude = [] } = options;
+    const excludeSet = new Set([...SKIP_DIRS, ...exclude]);
+    const registry = createDefaultRegistry();
+    const filePaths = collectParseableFiles(rootDir, excludeSet);
+    const files = filePaths.map((fp) => analyzeFile(fp, rootDir, registry));
+    const annotatedFiles = files.filter((f) => f.hasAnnotation).length;
+    const totalFiles = files.length;
+    const byLanguage = buildBreakdown(files, (f) => f.language);
+    const byDirectory = buildBreakdown(files, (f) => {
+        const dir = dirname(f.filePath);
+        return dir === '.' ? '(root)' : dir;
+    });
+    const byOwner = buildOwnerBreakdown(files, rootDir, registry);
+    return {
+        totalFiles,
+        annotatedFiles,
+        percentage: computePercentage(annotatedFiles, totalFiles),
+        byLanguage,
+        byDirectory,
+        byOwner,
+        files,
+    };
+}
+//# sourceMappingURL=coverage-calculator.js.map

package/dist/coverage/coverage-calculator.js.map

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package/dist/coverage/index.d.ts

@@ -0,0 +1,3 @@
+export { calculateCoverage } from './coverage-calculator.js';
+export type { CoverageBreakdown, CoverageOptions, CoverageResult, FileCoverageInfo, } from './types.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/coverage/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/coverage/index.js

@@ -0,0 +1,2 @@
+export { calculateCoverage } from './coverage-calculator.js';
+//# sourceMappingURL=index.js.map

package/dist/coverage/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/coverage/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,MAAM,0BAA0B,CAAC"}

package/dist/coverage/types.d.ts

@@ -0,0 +1,38 @@
+/**
+ * @knowgraph
+ * type: interface
+ * description: Immutable types for documentation coverage calculation and reporting
+ * owner: knowgraph-core
+ * status: experimental
+ * tags: [coverage, types, interface]
+ * context:
+ *   business_goal: Define data structures for measuring annotation coverage across a codebase
+ *   domain: coverage-engine
+ */
+export interface FileCoverageInfo {
+    readonly filePath: string;
+    readonly language: string;
+    readonly hasAnnotation: boolean;
+    readonly entityCount: number;
+}
+export interface CoverageBreakdown {
+    readonly category: string;
+    readonly annotatedCount: number;
+    readonly totalCount: number;
+    readonly percentage: number;
+}
+export interface CoverageResult {
+    readonly totalFiles: number;
+    readonly annotatedFiles: number;
+    readonly percentage: number;
+    readonly byLanguage: readonly CoverageBreakdown[];
+    readonly byDirectory: readonly CoverageBreakdown[];
+    readonly byOwner: readonly CoverageBreakdown[];
+    readonly files: readonly FileCoverageInfo[];
+}
+export interface CoverageOptions {
+    readonly rootDir: string;
+    readonly exclude?: readonly string[];
+    readonly byDimension?: 'language' | 'directory' | 'owner' | 'type';
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/coverage/types.d.ts.map

@@ -0,0 +1 @@
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package/dist/coverage/types.js

@@ -0,0 +1,13 @@
+/**
+ * @knowgraph
+ * type: interface
+ * description: Immutable types for documentation coverage calculation and reporting
+ * owner: knowgraph-core
+ * status: experimental
+ * tags: [coverage, types, interface]
+ * context:
+ *   business_goal: Define data structures for measuring annotation coverage across a codebase
+ *   domain: coverage-engine
+ */
+export {};
+//# sourceMappingURL=types.js.map

package/dist/coverage/types.js.map

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package/dist/index.d.ts

@@ -0,0 +1,17 @@
+export * from './types/index.js';
+export type { Parser, ParserRegistry as ParserRegistryInterface, } from './parsers/types.js';
+export { extractKnowgraphYaml, parseAndValidateMetadata, extractMetadata, } from './parsers/metadata-extractor.js';
+export type { ExtractionError, ExtractionResult, } from './parsers/metadata-extractor.js';
+export { createPythonParser } from './parsers/python-parser.js';
+export { createTypescriptParser } from './parsers/typescript-parser.js';
+export { createGenericParser } from './parsers/generic-parser.js';
+export { createGoParser } from './parsers/go-parser.js';
+export { createJavaParser } from './parsers/java-parser.js';
+export { createDefaultRegistry } from './parsers/registry.js';
+export * from './indexer/index.js';
+export * from './query/index.js';
+export * from './validation/index.js';
+export * from './coverage/index.js';
+export * from './suggest/index.js';
+export * from './connectors/index.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

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package/dist/index.js

@@ -0,0 +1,16 @@
+// Core library exports
+export * from './types/index.js';
+export { extractKnowgraphYaml, parseAndValidateMetadata, extractMetadata, } from './parsers/metadata-extractor.js';
+export { createPythonParser } from './parsers/python-parser.js';
+export { createTypescriptParser } from './parsers/typescript-parser.js';
+export { createGenericParser } from './parsers/generic-parser.js';
+export { createGoParser } from './parsers/go-parser.js';
+export { createJavaParser } from './parsers/java-parser.js';
+export { createDefaultRegistry } from './parsers/registry.js';
+export * from './indexer/index.js';
+export * from './query/index.js';
+export * from './validation/index.js';
+export * from './coverage/index.js';
+export * from './suggest/index.js';
+export * from './connectors/index.js';
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

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package/dist/indexer/database.d.ts

@@ -0,0 +1,32 @@
+/**
+ * @knowgraph
+ * type: module
+ * description: SQLite database manager with CRUD operations for entities, tags, links, and relationships
+ * owner: knowgraph-core
+ * status: stable
+ * tags: [database, sqlite, crud, storage]
+ * context:
+ *   business_goal: Persist and retrieve code entities with full metadata and relationships
+ *   domain: indexer-engine
+ */
+import Database from 'better-sqlite3';
+import type { Link } from '../types/index.js';
+import type { EntityInsert, IndexStats, StoredEntity } from './types.js';
+export declare function generateEntityId(filePath: string, name: string, line: number): string;
+export interface DatabaseManager {
+    readonly db: Database.Database;
+    initialize(): void;
+    close(): void;
+    getEntityById(id: string): StoredEntity | undefined;
+    getEntitiesByFilePath(filePath: string): readonly StoredEntity[];
+    insertEntity(entity: EntityInsert): string;
+    updateEntity(id: string, entity: Partial<EntityInsert>): void;
+    deleteEntitiesByFilePath(filePath: string): void;
+    insertRelationship(sourceId: string, targetId: string, type: string): void;
+    insertTags(entityId: string, tags: readonly string[]): void;
+    insertLinks(entityId: string, links: readonly Link[]): void;
+    getStats(): IndexStats;
+    getFileHash(filePath: string): string | undefined;
+}
+export declare function createDatabaseManager(dbPath?: string): DatabaseManager;
+//# sourceMappingURL=database.d.ts.map

package/dist/indexer/database.d.ts.map

@@ -0,0 +1 @@
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package/dist/indexer/database.js

@@ -0,0 +1,242 @@
+/**
+ * @knowgraph
+ * type: module
+ * description: SQLite database manager with CRUD operations for entities, tags, links, and relationships
+ * owner: knowgraph-core
+ * status: stable
+ * tags: [database, sqlite, crud, storage]
+ * context:
+ *   business_goal: Persist and retrieve code entities with full metadata and relationships
+ *   domain: indexer-engine
+ */
+import Database from 'better-sqlite3';
+import { createHash } from 'node:crypto';
+import { CREATE_TABLES_SQL, DELETE_FTS_BY_ENTITY_SQL, DELETE_FTS_BY_FILE_SQL, INSERT_ENTITY_SQL, INSERT_FTS_SQL, INSERT_LINK_SQL, INSERT_RELATIONSHIP_SQL, INSERT_TAG_SQL, UPDATE_ENTITY_SQL, } from './schema.js';
+export function generateEntityId(filePath, name, line) {
+    const raw = `${filePath}:${name}:${line}`;
+    return createHash('sha256').update(raw).digest('hex');
+}
+function rowToStoredEntity(row, tags, links) {
+    return {
+        id: row.id,
+        filePath: row.file_path,
+        name: row.name,
+        entityType: row.entity_type,
+        description: row.description,
+        rawDocstring: row.raw_docstring,
+        signature: row.signature,
+        parent: row.parent,
+        language: row.language,
+        line: row.line,
+        column: row.column_num,
+        owner: row.owner,
+        status: row.status,
+        metadata: JSON.parse(row.metadata_json),
+        tags,
+        links,
+        fileHash: row.file_hash,
+        createdAt: row.created_at,
+        updatedAt: row.updated_at,
+    };
+}
+export function createDatabaseManager(dbPath) {
+    const db = new Database(dbPath ?? ':memory:');
+    db.pragma('journal_mode = WAL');
+    db.pragma('foreign_keys = ON');
+    function initialize() {
+        db.exec(CREATE_TABLES_SQL);
+    }
+    function close() {
+        db.close();
+    }
+    function getTagsForEntity(entityId) {
+        const rows = db
+            .prepare('SELECT tag FROM tags WHERE entity_id = ?')
+            .all(entityId);
+        return rows.map((r) => r.tag);
+    }
+    function getLinksForEntity(entityId) {
+        const rows = db
+            .prepare('SELECT link_type, url, title FROM links WHERE entity_id = ?')
+            .all(entityId);
+        return rows.map((r) => ({
+            type: r.link_type,
+            url: r.url,
+            title: r.title ?? undefined,
+        }));
+    }
+    function insertFtsEntry(entityId, name, description, tagsText, owner) {
+        db.prepare(INSERT_FTS_SQL).run({
+            entity_id: entityId,
+            name,
+            description,
+            tags_text: tagsText,
+            owner,
+        });
+    }
+    function deleteFtsByEntityId(entityId) {
+        db.prepare(DELETE_FTS_BY_ENTITY_SQL).run({ entity_id: entityId });
+    }
+    function deleteFtsByFilePath(filePath) {
+        db.prepare(DELETE_FTS_BY_FILE_SQL).run({ file_path: filePath });
+    }
+    function getEntityById(id) {
+        const row = db.prepare('SELECT * FROM entities WHERE id = ?').get(id);
+        if (!row)
+            return undefined;
+        const tags = getTagsForEntity(id);
+        const links = getLinksForEntity(id);
+        return rowToStoredEntity(row, tags, links);
+    }
+    function getEntitiesByFilePath(filePath) {
+        const rows = db
+            .prepare('SELECT * FROM entities WHERE file_path = ?')
+            .all(filePath);
+        return rows.map((row) => {
+            const tags = getTagsForEntity(row.id);
+            const links = getLinksForEntity(row.id);
+            return rowToStoredEntity(row, tags, links);
+        });
+    }
+    function insertEntity(entity) {
+        const id = generateEntityId(entity.filePath, entity.name, entity.line);
+        const params = {
+            id,
+            file_path: entity.filePath,
+            name: entity.name,
+            entity_type: entity.entityType,
+            description: entity.description,
+            raw_docstring: entity.rawDocstring ?? null,
+            signature: entity.signature ?? null,
+            parent: entity.parent ?? null,
+            language: entity.language,
+            line: entity.line,
+            column_num: entity.column,
+            owner: entity.owner ?? null,
+            status: entity.status ?? null,
+            metadata_json: JSON.stringify(entity.metadata),
+            file_hash: entity.fileHash ?? null,
+        };
+        db.prepare(INSERT_ENTITY_SQL).run(params);
+        const tagsText = entity.tags?.join(' ') ?? '';
+        insertFtsEntry(id, entity.name, entity.description, tagsText, entity.owner ?? '');
+        if (entity.tags && entity.tags.length > 0) {
+            insertTags(id, entity.tags);
+        }
+        if (entity.links && entity.links.length > 0) {
+            insertLinks(id, entity.links);
+        }
+        return id;
+    }
+    function updateEntity(id, entity) {
+        const existing = db
+            .prepare('SELECT * FROM entities WHERE id = ?')
+            .get(id);
+        if (!existing)
+            return;
+        deleteFtsByEntityId(id);
+        const params = {
+            id,
+            file_path: entity.filePath ?? existing.file_path,
+            name: entity.name ?? existing.name,
+            entity_type: entity.entityType ?? existing.entity_type,
+            description: entity.description ?? existing.description,
+            raw_docstring: entity.rawDocstring ?? existing.raw_docstring,
+            signature: entity.signature ?? existing.signature,
+            parent: entity.parent ?? existing.parent,
+            language: entity.language ?? existing.language,
+            line: entity.line ?? existing.line,
+            column_num: entity.column ?? existing.column_num,
+            owner: entity.owner ?? existing.owner,
+            status: entity.status ?? existing.status,
+            metadata_json: entity.metadata
+                ? JSON.stringify(entity.metadata)
+                : existing.metadata_json,
+            file_hash: entity.fileHash ?? existing.file_hash,
+        };
+        db.prepare(UPDATE_ENTITY_SQL).run(params);
+        const tags = entity.tags ?? getTagsForEntity(id);
+        const tagsText = tags.join(' ');
+        insertFtsEntry(id, params.name, params.description, tagsText, params.owner ?? '');
+    }
+    function deleteEntitiesByFilePath(filePath) {
+        deleteFtsByFilePath(filePath);
+        db.prepare('DELETE FROM entities WHERE file_path = ?').run(filePath);
+    }
+    function insertRelationship(sourceId, targetId, type) {
+        db.prepare(INSERT_RELATIONSHIP_SQL).run({
+            source_id: sourceId,
+            target_id: targetId,
+            relationship_type: type,
+        });
+    }
+    function insertTags(entityId, tags) {
+        const stmt = db.prepare(INSERT_TAG_SQL);
+        for (const tag of tags) {
+            stmt.run({ entity_id: entityId, tag });
+        }
+    }
+    function insertLinks(entityId, links) {
+        const stmt = db.prepare(INSERT_LINK_SQL);
+        for (const link of links) {
+            stmt.run({
+                entity_id: entityId,
+                link_type: link.type ?? null,
+                url: link.url,
+                title: link.title ?? null,
+            });
+        }
+    }
+    function getStats() {
+        const totalEntities = db.prepare('SELECT COUNT(*) as count FROM entities').get().count;
+        const totalRelationships = db
+            .prepare('SELECT COUNT(*) as count FROM relationships')
+            .get().count;
+        const totalTags = db.prepare('SELECT COUNT(*) as count FROM tags').get().count;
+        const totalLinks = db.prepare('SELECT COUNT(*) as count FROM links').get().count;
+        const typeRows = db
+            .prepare('SELECT entity_type, COUNT(*) as count FROM entities GROUP BY entity_type')
+            .all();
+        const entitiesByType = {};
+        for (const row of typeRows) {
+            entitiesByType[row.entity_type] = row.count;
+        }
+        const langRows = db
+            .prepare('SELECT language, COUNT(*) as count FROM entities GROUP BY language')
+            .all();
+        const entitiesByLanguage = {};
+        for (const row of langRows) {
+            entitiesByLanguage[row.language] = row.count;
+        }
+        return {
+            totalEntities,
+            totalRelationships,
+            totalTags,
+            totalLinks,
+            entitiesByType,
+            entitiesByLanguage,
+        };
+    }
+    function getFileHash(filePath) {
+        const row = db
+            .prepare('SELECT file_hash FROM entities WHERE file_path = ? LIMIT 1')
+            .get(filePath);
+        return row?.file_hash ?? undefined;
+    }
+    return {
+        db,
+        initialize,
+        close,
+        getEntityById,
+        getEntitiesByFilePath,
+        insertEntity,
+        updateEntity,
+        deleteEntitiesByFilePath,
+        insertRelationship,
+        insertTags,
+        insertLinks,
+        getStats,
+        getFileHash,
+    };
+}
+//# sourceMappingURL=database.js.map

package/dist/indexer/database.js.map

@@ -0,0 +1 @@
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