@kitelev/exocortex-cli 16.94.0 → 16.95.0

package/dist/index.js

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-// @kitelev/exocortex-cli v16.94.0
+// @kitelev/exocortex-cli v16.95.0
 // CLI tool for Exocortex knowledge management system - SPARQL queries, task management, and more
 // License: MIT
 
@@ -775,7 +775,7 @@ Next steps:
 `),process.stdout.write(`  File:   ${e.file}
 `),process.stdout.write(`  Commit: ${e.sha}
 `),process.stdout.write(`  URL:    ${e.url}
-`)),process.exit(0)}catch(e){let t=e instanceof Error?e:new Error(String(e)),r=new Ei;t.message=r.redact(t.message),t.stack&&(t.stack=r.redact(t.stack)),le.handle(t)}})}a(Xie,"restPushCommand");var $o=require("node:fs"),Dj=require("node:crypto"),Ti=J(require("node:path"));var Ai=J(nt());var Yie=a(async n=>{let e=await Dj.webcrypto.subtle.digest("SHA-1",n.buffer.slice(n.byteOffset,n.byteOffset+n.byteLength));return[...new Uint8Array(e)].map(t=>t.toString(16).padStart(2,"0")).join("")},"nodeSha1"),Jie={parse:a(n=>Nt.load(n,{schema:Nt.CORE_SCHEMA}),"parse"),stringify:a(n=>Nt.dump(n,{schema:Nt.CORE_SCHEMA,lineWidth:-1}),"stringify")};function Zie(n,e){if(n.tokenFromGh===!0)return Ei.resolveGhToken(e.ghTokenRunner);let t=e.env??process.env,r=n.token||t.GITHUB_TOKEN||t.GH_TOKEN||"";if(r.length===0)throw new Error("A GitHub token is required (private sync units read as 404 without one). Use --token-from-gh, --token <pat>, or set GITHUB_TOKEN / GH_TOKEN.");return r}a(Zie,"resolveToken");function ese(n){let e=a(r=>Ti.join(n,r),"abs"),t=a(async(r,i)=>{let s;try{s=await $o.promises.readdir(r,{withFileTypes:!0})}catch{return}for(let o of s){let c=Ti.join(r,o.name);if(o.isDirectory()){if(o.name===".git")continue;await t(c,i)}else o.isFile()&&i.push(Ti.relative(n,c).split(Ti.sep).join("/"))}},"walk");return{async list(){let r=[];return(0,$o.existsSync)(n)&&await t(n,r),r},read:a(r=>$o.promises.readFile(e(r),"utf-8"),"read"),async readBinary(r){return new Uint8Array(await $o.promises.readFile(e(r)))},async write(){throw new Error("exosync-parity is read-only \u2014 write refused")},async delete(){throw new Error("exosync-parity is read-only \u2014 delete refused")}}}a(ese,"nodeLocalFilesPort");function vA(n){let e=new pt(n),t=new Ai.SpaceSpecAccumulator;for(let r of e.getAllFiles()){let i=e.getFrontmatter(r);if(!i)continue;let s=(0,Ai.classifySpaceDeclaration)(i,r.path);if(s.kind==="not-space"||(s.warning!==void 0&&t.warnings.push(s.warning),s.kind==="skip"))continue;let o=t.offer(s.candidate);o!==null&&(0,$o.existsSync)(Ti.join(n,o.localPath))&&t.commit(s.candidate)}return{specs:t.specs,warnings:t.warnings}}a(vA,"collectVaultSpecs");function tse(n,e){for(let t of n.repos){let r=t.headSha!==void 0?` @${t.headSha.slice(0,7)}`:"";e(`${t.repoKey}${r}: ${t.status} \u2014 ${t.inParity}/${t.filesChecked} in parity, M2 diffs ${t.m2SemanticDiffs}, accounted ${t.accountedCount}, M1 violations ${t.m1Violations.length}${t.attachmentHashSetIdentical!==void 0?`, attachment hash-set ${t.attachmentHashSetIdentical?"identical":"DIFFERS"}`:""}`),t.detail!==void 0&&e(`  ${t.detail}`);for(let i of t.warnings)e(`  warn: ${i}`);for(let i of t.discrepancies)e(`  ${i.cls}: ${i.path}${i.detail!==void 0?` (${i.detail})`:""}`);for(let i of t.m1Violations)e(`  M1 VIOLATION: ${i.path} \u2014 ${i.detail}`)}e((0,Ai.summarizeParityRound)(n))}a(tse,"printHumanReport");async function rse(n,e={}){let t=e.out??(y=>console.log(y)),r=Ti.resolve(n.vault);if(!(0,$o.existsSync)(r))throw new Error(`Vault path does not exist: ${r}`);let i=Zie(n,e),s=new Ei({token:i,...n.apiBase!==void 0?{apiBase:n.apiBase}:{}}),o=e.transportFactory?.(i,n.apiBase)??s.transport(),{specs:c,warnings:l}=vA(r);for(let y of l)t(`warn: ${y}`);if(c.length===0)return t("Nothing to check \u2014 no materialized AssetSpaces with a GitHub source found in this vault."),2;let u=n.configDir??".obsidian",f=Ti.join(r,u,"plugins","exocortex",Ai.WATERMARK_STORE_FILENAME),d=new Ai.FileWatermarkStore({read:a(async()=>{try{return await $o.promises.readFile(f,"utf-8")}catch{return null}},"read"),writeAtomic:a(async()=>{throw new Error("exosync-parity: watermark access is read-only by contract")},"writeAtomic")}),p=new Ai.ParityValidator({transport:o,sha1:Yie,localFilesFor:a(y=>ese(Ti.join(r,y.localPath)),"localFilesFor"),watermarks:{get:a(y=>d.get(y),"get")},yaml:Jie,redact:a(y=>s.redact(y),"redact"),...n.apiBase!==void 0?{baseURL:n.apiBase}:{}});t(`ExoSync parity check: ${c.length} repo(s), vault ${r}`);let h=await p.runRound(c,{trigger:"standalone"});return n.json===!0?t(JSON.stringify(h,null,2)):tse(h,t),h.vacuous?2:h.ok?0:1}a(rse,"runExosyncParity");function Fj(){return new Ae("exosync-parity").description("ExoSync M1/M2 parity report: compare materialized sync units against their remote heads (read-only; RFC 4e4dc453 Phase E)").requiredOption("--vault <path>","Vault root path").option("--config-dir <name>","Obsidian config dir name (watermark location)",".obsidian").option("--json","Print the full round record as JSON").option("--token <pat>","GitHub PAT (or env GITHUB_TOKEN / GH_TOKEN). Prefer --token-from-gh.").option("--token-from-gh","Resolve the PAT via `gh auth token`").option("--api-base <url>","GitHub API base (testing)").action(async n=>{try{process.exitCode=await rse(n)}catch(e){le.handle(e,{command:"exosync-parity"}),process.exitCode=1}})}a(Fj,"exosyncParityCommand");var Dr=require("node:fs"),Nj=require("node:crypto"),xn=J(require("node:path"));var Fr=J(nt());var Lj=a(async n=>{let e=await Nj.webcrypto.subtle.digest("SHA-1",n.buffer.slice(n.byteOffset,n.byteOffset+n.byteLength));return[...new Uint8Array(e)].map(t=>t.toString(16).padStart(2,"0")).join("")},"nodeSha1"),nse={parse:a(n=>Nt.load(n,{schema:Nt.CORE_SCHEMA}),"parse"),stringify:a(n=>Nt.dump(n,{schema:Nt.CORE_SCHEMA,lineWidth:-1}),"stringify")};function ise(n,e){if(n.tokenFromGh===!0)return Ei.resolveGhToken(e.ghTokenRunner);let t=e.env??process.env,r=n.token||t.GITHUB_TOKEN||t.GH_TOKEN||"";if(r.length===0)throw new Error("A GitHub token is required (private sync units read as 404 and push needs write scope). Use --token-from-gh, --token <pat>, or set GITHUB_TOKEN / GH_TOKEN.");return r}a(ise,"resolveToken");function sse(n){let e=/^https:\/\/github\.com\/([^/]+)\/([^/]+?)(?:\.git)?\/?$/.exec(n.trim());if(e===null)throw new Error(`Invalid quarantine repo URL (expected https://github.com/<owner>/<repo>): ${n}`);return{owner:e[1],repo:e[2]}}a(sse,"parseGitHubRepoUrl");function ose(n){let e=a(i=>xn.join(n,i),"abs"),t=a(async(i,s)=>{let o;try{o=await Dr.promises.readdir(i,{withFileTypes:!0})}catch{return}for(let c of o){let l=xn.join(i,c.name);if(c.isDirectory()){if(c.name===".git")continue;await t(l,s)}else c.isFile()&&s.push(xn.relative(n,l).split(xn.sep).join("/"))}},"walk"),r=a(async(i,s)=>{let o=xn.dirname(i);await Dr.promises.mkdir(o,{recursive:!0});let c=`${i}.local.tmp`;await s(c),await Dr.promises.rename(c,i)},"writeAtomic");return{async list(){let i=[];return(0,Dr.existsSync)(n)&&await t(n,i),i},read:a(i=>Dr.promises.readFile(e(i),"utf-8"),"read"),async write(i,s){await r(e(i),o=>Dr.promises.writeFile(o,s,"utf-8"))},async delete(i){await Dr.promises.rm(e(i),{force:!0})},async readBinary(i){return new Uint8Array(await Dr.promises.readFile(e(i)))},async writeBinary(i,s){let o=s.buffer.slice(s.byteOffset,s.byteOffset+s.byteLength);await r(e(i),c=>Dr.promises.writeFile(c,Buffer.from(o)))}}}a(ose,"nodeLocalFilesPort");function ase(n){return{async read(){try{return await Dr.promises.readFile(n,"utf-8")}catch{return null}},async writeAtomic(e){await Dr.promises.mkdir(xn.dirname(n),{recursive:!0});let t=`${n}.local.tmp`;await Dr.promises.writeFile(t,e,"utf-8"),await Dr.promises.rename(t,n)}}}a(ase,"nodeWatermarkFileIO");function cse(n){return{async check(e){let t=xn.join(n,e.localPath);if(!(0,Dr.existsSync)(t))return{fullyMaterialized:!1,reason:`mount folder ${e.localPath} does not exist`};let r=0;try{r=(await Dr.promises.readdir(t)).length}catch{return{fullyMaterialized:!1,reason:`mount folder ${e.localPath} is not readable`}}return r===0&&e.spaceKind!=="file"?{fullyMaterialized:!1,reason:`mount folder ${e.localPath} is empty (mid-mount?)`}:{fullyMaterialized:!0}}}}a(cse,"nodeMaterializationCheck");function lse(n,e){let t=n.pushedSha!==void 0?` \u2192@${n.pushedSha.slice(0,7)}`:"";e(`${n.repoKey}${t}: ${n.status} \u2014 pulled ${n.pulledCount}, pushed ${n.pushedCount}, merged ${n.mergedCount}, quarantined ${n.quarantinedCount}${(n.pushedDeletes?.length??0)>0?`, deleted ${n.pushedDeletes.length}`:""}`),n.detail!==void 0&&e(`  ${n.detail}`);for(let r of n.warnings)e(`  warn: ${r}`);(n.deferredPaths?.length??0)>0&&e(`  deferred (\u2192 full sync): ${n.deferredPaths.join(", ")}`),(n.deferredDeletes?.length??0)>0&&e(`  deferred deletes: ${n.deferredDeletes.join(", ")}`)}a(lse,"printRepoResult");function use(n){return n==="conflict"||n==="full-conflict"||n==="retry-exhausted"||n==="busy"||n==="auth-required"||n==="error"}a(use,"isFailureStatus");async function fse(n,e,t={}){let r=t.out??(b=>console.log(b)),i=xn.resolve(e.vault);if(!(0,Dr.existsSync)(i))throw new Error(`Vault path does not exist: ${i}`);let s=ise(e,t),o=new Ei({token:s,...e.apiBase!==void 0?{apiBase:e.apiBase}:{}}),c=t.transportFactory?.(s,e.apiBase)??o.transport(),{specs:l,warnings:u}=vA(i);for(let b of u)r(`warn: ${b}`);if(l.length===0)return r("Nothing to sync \u2014 no materialized AssetSpaces with a GitHub source found in this vault."),2;let f=e.configDir??".obsidian",d=xn.join(i,f,"plugins","exocortex",Fr.WATERMARK_STORE_FILENAME),p,h=e.quarantineRepo?.trim()??"";if(h.length>0){let{owner:b,repo:S}=sse(h);p=new Fr.SyncedQuarantineStore({transport:(0,Fr.withRateLimitBackoff)(c),sha1:Lj,owner:b,repo:S,branch:Fr.SYNC_BRANCH,redact:a(T=>o.redact(T),"redact")})}let y=new Fr.SyncEngine({transport:c,watermarkStore:new Fr.FileWatermarkStore(ase(d)),materializationCheck:cse(i),localFilesFor:a(b=>ose(xn.join(i,b.localPath)),"localFilesFor"),sha1:Lj,redact:a(b=>o.redact(b),"redact"),commitMessage:a((b,S,T=0)=>`exosync: ${S} change(s)${T>0?`, ${T} deletion(s)`:""} (CLI)`,"commitMessage"),mergeLayer:new Fr.GatedStructuredMerger(new Fr.StructuredMerger(nse)),...p!==void 0?{quarantine:p}:{},...e.apiBase!==void 0?{baseURL:e.apiBase}:{}});r(`ExoSync ${n}: ${l.length} repo(s), vault ${i}${p!==void 0?" (quarantine configured)":""}`);let g=(0,Fr.orderChildrenFirst)(l),v=await y.syncAll(g,n);if(e.json===!0)r(JSON.stringify(v,null,2));else{for(let S of v)lse(S,r);let b=v.reduce((S,T)=>({pulled:S.pulled+T.pulledCount,pushed:S.pushed+T.pushedCount,merged:S.merged+T.mergedCount,quarantined:S.quarantined+T.quarantinedCount}),{pulled:0,pushed:0,merged:0,quarantined:0});r(`Summary: ${v.length} repo(s) \u2014 pulled ${b.pulled}, pushed ${b.pushed}, merged ${b.merged}, quarantined ${b.quarantined}`)}return v.some(b=>use(b.status))?1:0}a(fse,"runExosyncSync");function EA(n){return n.requiredOption("--vault <path>","Vault root path").option("--config-dir <name>","Obsidian config dir name (watermark location)",".obsidian").option("--quarantine-repo <url>","Quarantine repo URL (https://github.com/<owner>/<repo>) \u2014 required for FileSpaces").option("--token <pat>","GitHub PAT (or env GITHUB_TOKEN / GH_TOKEN). Prefer --token-from-gh.").option("--token-from-gh","Resolve the PAT via `gh auth token`").option("--json","Print the full per-repo result array as JSON").option("--api-base <url>","GitHub API base (testing)")}a(EA,"withSyncOptions");function TA(n){return async e=>{try{process.exitCode=await fse(n,e)}catch(t){le.handle(t,{command:`exosync ${n}`}),process.exitCode=1}}}a(TA,"makeDirectionAction");function kj(){let n=new Ae("exosync").description("ExoSync over the GitHub REST API: sync/pull/push the materialized AssetSpace set (CLI parity with the plugin; RFC 4e4dc453 Phase B). Read-only divergence check: `exosync-parity`.");return EA(n.command("sync").description("Full pull\u2192merge\u2192push cycle for every materialized repo")).action(TA("sync")),EA(n.command("pull").description("Apply remote changes only (nothing leaves the device; local changes re-derive)")).action(TA("pull")),EA(n.command("push").description("Send the local delta only (remote changes are pinned to re-derive on the next pull/sync)")).action(TA("push")),n}a(kj,"exosyncCommand");function Mj(n){let e=new Ae;return e.name("exocortex").description("CLI tool for Exocortex knowledge management system").version(n??"16.94.0"),e.addCommand(VM()),e.addCommand(JM()),e.addCommand(Lk()),e.addCommand(Mk()),e.addCommand(dM()),e.addCommand(Bk()),e.addCommand(Vk()),e.addCommand(Hk()),e.addCommand(mM()),e.addCommand(TM()),e.addCommand(IM()),e.addCommand(OM()),e.addCommand(BM()),e.addCommand(pj()),e.addCommand(_j()),e.addCommand(Sj()),e.addCommand(vj()),e.addCommand(Ij()),e.addCommand(Oj()),e.addCommand(Fj()),e.addCommand(kj()),e}a(Mj,"createProgram");Mj().parse();0&&(module.exports={createProgram});
+`)),process.exit(0)}catch(e){let t=e instanceof Error?e:new Error(String(e)),r=new Ei;t.message=r.redact(t.message),t.stack&&(t.stack=r.redact(t.stack)),le.handle(t)}})}a(Xie,"restPushCommand");var $o=require("node:fs"),Dj=require("node:crypto"),Ti=J(require("node:path"));var Ai=J(nt());var Yie=a(async n=>{let e=await Dj.webcrypto.subtle.digest("SHA-1",n.buffer.slice(n.byteOffset,n.byteOffset+n.byteLength));return[...new Uint8Array(e)].map(t=>t.toString(16).padStart(2,"0")).join("")},"nodeSha1"),Jie={parse:a(n=>Nt.load(n,{schema:Nt.CORE_SCHEMA}),"parse"),stringify:a(n=>Nt.dump(n,{schema:Nt.CORE_SCHEMA,lineWidth:-1}),"stringify")};function Zie(n,e){if(n.tokenFromGh===!0)return Ei.resolveGhToken(e.ghTokenRunner);let t=e.env??process.env,r=n.token||t.GITHUB_TOKEN||t.GH_TOKEN||"";if(r.length===0)throw new Error("A GitHub token is required (private sync units read as 404 without one). Use --token-from-gh, --token <pat>, or set GITHUB_TOKEN / GH_TOKEN.");return r}a(Zie,"resolveToken");function ese(n){let e=a(r=>Ti.join(n,r),"abs"),t=a(async(r,i)=>{let s;try{s=await $o.promises.readdir(r,{withFileTypes:!0})}catch{return}for(let o of s){let c=Ti.join(r,o.name);if(o.isDirectory()){if(o.name===".git")continue;await t(c,i)}else o.isFile()&&i.push(Ti.relative(n,c).split(Ti.sep).join("/"))}},"walk");return{async list(){let r=[];return(0,$o.existsSync)(n)&&await t(n,r),r},read:a(r=>$o.promises.readFile(e(r),"utf-8"),"read"),async readBinary(r){return new Uint8Array(await $o.promises.readFile(e(r)))},async write(){throw new Error("exosync-parity is read-only \u2014 write refused")},async delete(){throw new Error("exosync-parity is read-only \u2014 delete refused")}}}a(ese,"nodeLocalFilesPort");function vA(n){let e=new pt(n),t=new Ai.SpaceSpecAccumulator;for(let r of e.getAllFiles()){let i=e.getFrontmatter(r);if(!i)continue;let s=(0,Ai.classifySpaceDeclaration)(i,r.path);if(s.kind==="not-space"||(s.warning!==void 0&&t.warnings.push(s.warning),s.kind==="skip"))continue;let o=t.offer(s.candidate);o!==null&&(0,$o.existsSync)(Ti.join(n,o.localPath))&&t.commit(s.candidate)}return{specs:t.specs,warnings:t.warnings}}a(vA,"collectVaultSpecs");function tse(n,e){for(let t of n.repos){let r=t.headSha!==void 0?` @${t.headSha.slice(0,7)}`:"";e(`${t.repoKey}${r}: ${t.status} \u2014 ${t.inParity}/${t.filesChecked} in parity, M2 diffs ${t.m2SemanticDiffs}, accounted ${t.accountedCount}, M1 violations ${t.m1Violations.length}${t.attachmentHashSetIdentical!==void 0?`, attachment hash-set ${t.attachmentHashSetIdentical?"identical":"DIFFERS"}`:""}`),t.detail!==void 0&&e(`  ${t.detail}`);for(let i of t.warnings)e(`  warn: ${i}`);for(let i of t.discrepancies)e(`  ${i.cls}: ${i.path}${i.detail!==void 0?` (${i.detail})`:""}`);for(let i of t.m1Violations)e(`  M1 VIOLATION: ${i.path} \u2014 ${i.detail}`)}e((0,Ai.summarizeParityRound)(n))}a(tse,"printHumanReport");async function rse(n,e={}){let t=e.out??(y=>console.log(y)),r=Ti.resolve(n.vault);if(!(0,$o.existsSync)(r))throw new Error(`Vault path does not exist: ${r}`);let i=Zie(n,e),s=new Ei({token:i,...n.apiBase!==void 0?{apiBase:n.apiBase}:{}}),o=e.transportFactory?.(i,n.apiBase)??s.transport(),{specs:c,warnings:l}=vA(r);for(let y of l)t(`warn: ${y}`);if(c.length===0)return t("Nothing to check \u2014 no materialized AssetSpaces with a GitHub source found in this vault."),2;let u=n.configDir??".obsidian",f=Ti.join(r,u,"plugins","exocortex",Ai.WATERMARK_STORE_FILENAME),d=new Ai.FileWatermarkStore({read:a(async()=>{try{return await $o.promises.readFile(f,"utf-8")}catch{return null}},"read"),writeAtomic:a(async()=>{throw new Error("exosync-parity: watermark access is read-only by contract")},"writeAtomic")}),p=new Ai.ParityValidator({transport:o,sha1:Yie,localFilesFor:a(y=>ese(Ti.join(r,y.localPath)),"localFilesFor"),watermarks:{get:a(y=>d.get(y),"get")},yaml:Jie,redact:a(y=>s.redact(y),"redact"),...n.apiBase!==void 0?{baseURL:n.apiBase}:{}});t(`ExoSync parity check: ${c.length} repo(s), vault ${r}`);let h=await p.runRound(c,{trigger:"standalone"});return n.json===!0?t(JSON.stringify(h,null,2)):tse(h,t),h.vacuous?2:h.ok?0:1}a(rse,"runExosyncParity");function Fj(){return new Ae("exosync-parity").description("ExoSync M1/M2 parity report: compare materialized sync units against their remote heads (read-only; RFC 4e4dc453 Phase E)").requiredOption("--vault <path>","Vault root path").option("--config-dir <name>","Obsidian config dir name (watermark location)",".obsidian").option("--json","Print the full round record as JSON").option("--token <pat>","GitHub PAT (or env GITHUB_TOKEN / GH_TOKEN). Prefer --token-from-gh.").option("--token-from-gh","Resolve the PAT via `gh auth token`").option("--api-base <url>","GitHub API base (testing)").action(async n=>{try{process.exitCode=await rse(n)}catch(e){le.handle(e,{command:"exosync-parity"}),process.exitCode=1}})}a(Fj,"exosyncParityCommand");var Dr=require("node:fs"),Nj=require("node:crypto"),xn=J(require("node:path"));var Fr=J(nt());var Lj=a(async n=>{let e=await Nj.webcrypto.subtle.digest("SHA-1",n.buffer.slice(n.byteOffset,n.byteOffset+n.byteLength));return[...new Uint8Array(e)].map(t=>t.toString(16).padStart(2,"0")).join("")},"nodeSha1"),nse={parse:a(n=>Nt.load(n,{schema:Nt.CORE_SCHEMA}),"parse"),stringify:a(n=>Nt.dump(n,{schema:Nt.CORE_SCHEMA,lineWidth:-1}),"stringify")};function ise(n,e){if(n.tokenFromGh===!0)return Ei.resolveGhToken(e.ghTokenRunner);let t=e.env??process.env,r=n.token||t.GITHUB_TOKEN||t.GH_TOKEN||"";if(r.length===0)throw new Error("A GitHub token is required (private sync units read as 404 and push needs write scope). Use --token-from-gh, --token <pat>, or set GITHUB_TOKEN / GH_TOKEN.");return r}a(ise,"resolveToken");function sse(n){let e=/^https:\/\/github\.com\/([^/]+)\/([^/]+?)(?:\.git)?\/?$/.exec(n.trim());if(e===null)throw new Error(`Invalid quarantine repo URL (expected https://github.com/<owner>/<repo>): ${n}`);return{owner:e[1],repo:e[2]}}a(sse,"parseGitHubRepoUrl");function ose(n){let e=a(i=>xn.join(n,i),"abs"),t=a(async(i,s)=>{let o;try{o=await Dr.promises.readdir(i,{withFileTypes:!0})}catch{return}for(let c of o){let l=xn.join(i,c.name);if(c.isDirectory()){if(c.name===".git")continue;await t(l,s)}else c.isFile()&&s.push(xn.relative(n,l).split(xn.sep).join("/"))}},"walk"),r=a(async(i,s)=>{let o=xn.dirname(i);await Dr.promises.mkdir(o,{recursive:!0});let c=`${i}.local.tmp`;await s(c),await Dr.promises.rename(c,i)},"writeAtomic");return{async list(){let i=[];return(0,Dr.existsSync)(n)&&await t(n,i),i},read:a(i=>Dr.promises.readFile(e(i),"utf-8"),"read"),async write(i,s){await r(e(i),o=>Dr.promises.writeFile(o,s,"utf-8"))},async delete(i){await Dr.promises.rm(e(i),{force:!0})},async readBinary(i){return new Uint8Array(await Dr.promises.readFile(e(i)))},async writeBinary(i,s){let o=s.buffer.slice(s.byteOffset,s.byteOffset+s.byteLength);await r(e(i),c=>Dr.promises.writeFile(c,Buffer.from(o)))}}}a(ose,"nodeLocalFilesPort");function ase(n){return{async read(){try{return await Dr.promises.readFile(n,"utf-8")}catch{return null}},async writeAtomic(e){await Dr.promises.mkdir(xn.dirname(n),{recursive:!0});let t=`${n}.local.tmp`;await Dr.promises.writeFile(t,e,"utf-8"),await Dr.promises.rename(t,n)}}}a(ase,"nodeWatermarkFileIO");function cse(n){return{async check(e){let t=xn.join(n,e.localPath);if(!(0,Dr.existsSync)(t))return{fullyMaterialized:!1,reason:`mount folder ${e.localPath} does not exist`};let r=0;try{r=(await Dr.promises.readdir(t)).length}catch{return{fullyMaterialized:!1,reason:`mount folder ${e.localPath} is not readable`}}return r===0&&e.spaceKind!=="file"?{fullyMaterialized:!1,reason:`mount folder ${e.localPath} is empty (mid-mount?)`}:{fullyMaterialized:!0}}}}a(cse,"nodeMaterializationCheck");function lse(n,e){let t=n.pushedSha!==void 0?` \u2192@${n.pushedSha.slice(0,7)}`:"";e(`${n.repoKey}${t}: ${n.status} \u2014 pulled ${n.pulledCount}, pushed ${n.pushedCount}, merged ${n.mergedCount}, quarantined ${n.quarantinedCount}${(n.pushedDeletes?.length??0)>0?`, deleted ${n.pushedDeletes.length}`:""}`),n.detail!==void 0&&e(`  ${n.detail}`);for(let r of n.warnings)e(`  warn: ${r}`);(n.deferredPaths?.length??0)>0&&e(`  deferred (\u2192 full sync): ${n.deferredPaths.join(", ")}`),(n.deferredDeletes?.length??0)>0&&e(`  deferred deletes: ${n.deferredDeletes.join(", ")}`)}a(lse,"printRepoResult");function use(n){return n==="conflict"||n==="full-conflict"||n==="retry-exhausted"||n==="busy"||n==="auth-required"||n==="error"}a(use,"isFailureStatus");async function fse(n,e,t={}){let r=t.out??(b=>console.log(b)),i=xn.resolve(e.vault);if(!(0,Dr.existsSync)(i))throw new Error(`Vault path does not exist: ${i}`);let s=ise(e,t),o=new Ei({token:s,...e.apiBase!==void 0?{apiBase:e.apiBase}:{}}),c=t.transportFactory?.(s,e.apiBase)??o.transport(),{specs:l,warnings:u}=vA(i);for(let b of u)r(`warn: ${b}`);if(l.length===0)return r("Nothing to sync \u2014 no materialized AssetSpaces with a GitHub source found in this vault."),2;let f=e.configDir??".obsidian",d=xn.join(i,f,"plugins","exocortex",Fr.WATERMARK_STORE_FILENAME),p,h=e.quarantineRepo?.trim()??"";if(h.length>0){let{owner:b,repo:S}=sse(h);p=new Fr.SyncedQuarantineStore({transport:(0,Fr.withRateLimitBackoff)(c),sha1:Lj,owner:b,repo:S,branch:Fr.SYNC_BRANCH,redact:a(T=>o.redact(T),"redact")})}let y=new Fr.SyncEngine({transport:c,watermarkStore:new Fr.FileWatermarkStore(ase(d)),materializationCheck:cse(i),localFilesFor:a(b=>ose(xn.join(i,b.localPath)),"localFilesFor"),sha1:Lj,redact:a(b=>o.redact(b),"redact"),commitMessage:a((b,S,T=0)=>`exosync: ${S} change(s)${T>0?`, ${T} deletion(s)`:""} (CLI)`,"commitMessage"),mergeLayer:new Fr.GatedStructuredMerger(new Fr.StructuredMerger(nse)),...p!==void 0?{quarantine:p}:{},...e.apiBase!==void 0?{baseURL:e.apiBase}:{}});r(`ExoSync ${n}: ${l.length} repo(s), vault ${i}${p!==void 0?" (quarantine configured)":""}`);let g=(0,Fr.orderChildrenFirst)(l),v=await y.syncAll(g,n);if(e.json===!0)r(JSON.stringify(v,null,2));else{for(let S of v)lse(S,r);let b=v.reduce((S,T)=>({pulled:S.pulled+T.pulledCount,pushed:S.pushed+T.pushedCount,merged:S.merged+T.mergedCount,quarantined:S.quarantined+T.quarantinedCount}),{pulled:0,pushed:0,merged:0,quarantined:0});r(`Summary: ${v.length} repo(s) \u2014 pulled ${b.pulled}, pushed ${b.pushed}, merged ${b.merged}, quarantined ${b.quarantined}`)}return v.some(b=>use(b.status))?1:0}a(fse,"runExosyncSync");function EA(n){return n.requiredOption("--vault <path>","Vault root path").option("--config-dir <name>","Obsidian config dir name (watermark location)",".obsidian").option("--quarantine-repo <url>","Quarantine repo URL (https://github.com/<owner>/<repo>) \u2014 required for FileSpaces").option("--token <pat>","GitHub PAT (or env GITHUB_TOKEN / GH_TOKEN). Prefer --token-from-gh.").option("--token-from-gh","Resolve the PAT via `gh auth token`").option("--json","Print the full per-repo result array as JSON").option("--api-base <url>","GitHub API base (testing)")}a(EA,"withSyncOptions");function TA(n){return async e=>{try{process.exitCode=await fse(n,e)}catch(t){le.handle(t,{command:`exosync ${n}`}),process.exitCode=1}}}a(TA,"makeDirectionAction");function kj(){let n=new Ae("exosync").description("ExoSync over the GitHub REST API: sync/pull/push the materialized AssetSpace set (CLI parity with the plugin; RFC 4e4dc453 Phase B). Read-only divergence check: `exosync-parity`.");return EA(n.command("sync").description("Full pull\u2192merge\u2192push cycle for every materialized repo")).action(TA("sync")),EA(n.command("pull").description("Apply remote changes only (nothing leaves the device; local changes re-derive)")).action(TA("pull")),EA(n.command("push").description("Send the local delta only (remote changes are pinned to re-derive on the next pull/sync)")).action(TA("push")),n}a(kj,"exosyncCommand");function Mj(n){let e=new Ae;return e.name("exocortex").description("CLI tool for Exocortex knowledge management system").version(n??"16.95.0"),e.addCommand(VM()),e.addCommand(JM()),e.addCommand(Lk()),e.addCommand(Mk()),e.addCommand(dM()),e.addCommand(Bk()),e.addCommand(Vk()),e.addCommand(Hk()),e.addCommand(mM()),e.addCommand(TM()),e.addCommand(IM()),e.addCommand(OM()),e.addCommand(BM()),e.addCommand(pj()),e.addCommand(_j()),e.addCommand(Sj()),e.addCommand(vj()),e.addCommand(Ij()),e.addCommand(Oj()),e.addCommand(Fj()),e.addCommand(kj()),e}a(Mj,"createProgram");Mj().parse();0&&(module.exports={createProgram});
 /*! Bundled license information:
 
 reflect-metadata/Reflect.js:

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@kitelev/exocortex-cli",
-  "version": "16.94.0",
+  "version": "16.95.0",
   "description": "CLI tool for Exocortex knowledge management system - SPARQL queries, task management, and more",
   "main": "dist/index.js",
   "bin": {