@kitelev/exocortex-cli 16.80.1 → 16.80.3

package/dist/index.js

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-// @kitelev/exocortex-cli v16.80.1
+// @kitelev/exocortex-cli v16.80.3
 // CLI tool for Exocortex knowledge management system - SPARQL queries, task management, and more
 // License: MIT
 
@@ -372,7 +372,7 @@ LIMIT ${this.config.defaultLimit}`,s="\u041D\u0435 \u0443\u0434\u0430\u043B\u043
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r}};gr.SourceAnnotator=dv;gr.SourceAnnotator=dv=BV([(0,GV.injectable)(),VV("design:paramtypes",[Object])],dv)});var gv=S(Hn=>{"use strict";var WV=Hn&&Hn.__decorate||function(n,e,t,r){var i=arguments.length,s=i<3?e:r===null?r=Object.getOwnPropertyDescriptor(e,t):r,o;if(typeof Reflect=="object"&&typeof Reflect.decorate=="function")s=Reflect.decorate(n,e,t,r);else for(var c=n.length-1;c>=0;c--)(o=n[c])&&(s=(i<3?o(s):i>3?o(e,t,s):o(e,t))||s);return i>3&&s&&Object.defineProperty(e,t,s),s},zV=Hn&&Hn.__metadata||function(n,e){if(typeof Reflect=="object"&&typeof Reflect.metadata=="function")return Reflect.metadata(n,e)},n3=Hn&&Hn.__param||function(n,e){return function(t,r){e(t,r,n)}};Object.defineProperty(Hn,"__esModule",{value:!0});Hn.NoteToRDFConverter=void 0;Hn.normaliseExcludedFolders=a3;Hn.isPathExcluded=c3;var pv=Le(),yr=Gn(),_o=Ie(),mn=Ue(),i3=Ut(),Yt=Qt(),s3=Vt(),HV=K1(),KV=Gc(),mv=z1(),Nn=rb(),QV=lv(),o3=new Set(["archived","draft","pinned","aliases"]);function a3(n){return Array.isArray(n)?n.map(e=>String(e).replace(/\\/g,"/").trim()).filter(e=>e.length>0).map(e=>e.endsWith("/")?e:`${e}/`):[]}a(a3,"normaliseExcludedFolders");function c3(n,e){if(e.length===0)return!1;let t=n.replace(/\\/g,"/");for(let r of e)if(t.startsWith(r))return!0;return!1}a(c3,"isPathExcluded");function XV(n){if(!n)return"";let e=n.replace(/\\/g,"/");for(;e.startsWith("/");)e=e.slice(1);for(;e.endsWith("/");)e=e.slice(0,-1);return e.length>0?`${e}/`:""}a(XV,"normaliseSubjectIriPrefix");var kl=class{static{a(this,"NoteToRDFConverter")}constructor(e,t=KV.NullLogger,r={}){this.vault=e,this.logger=t,this.BODY_WIKILINK_PATTERN=/(?<!!)\[\[([^\]|]+)(?:\|[^\]]+)?\]\]/g,this.pendingExtraTriples=[],this.vocabularyMapper=new HV.RDFVocabularyMapper,this.subjectIriPrefix=XV(r.subjectIriPrefix)}async convertNote(e){let t=this.vault.getFrontmatter(e);if(!t)return[];let r=this.notePathToIRI(e.path),i=Yt.Namespace.EXO.term("Asset_filename"),s=new yr.Triple(r,i,new mn.Literal(e.basename));if(Nn.Exo003Parser.isExo003Format(t)){let o=await this.convertExo003Note(e,t);return[s,...o]}return this.convertLegacyNote(e,t,s)}async convertLegacyNote(e,t,r){this.pendingExtraTriples=[];let i=[r],s=this.notePathToIRI(e.path);for(let[f,d]of Object.entries(t)){let h=o3.has(f)?`exo__Asset_${f}`:f;if(!this.isExocortexProperty(h))continue;let p=this.propertyKeyToIRI(h),g=Array.isArray(d)?d:[d];for(let y of g)if(!((f==="exo__Asset_label"||o3.has(f))&&(y==null||typeof y=="string"&&y.trim()==="")))if(f==="exo__Instance_class"){let v=this.valueToClassURI(y);i.push(new yr.Triple(s,p,v))}else{let v=await this.valueToRDFObject(y,e,p);for(let _ of v)if(i.push(new yr.Triple(s,p,_)),this.vocabularyMapper.hasMappingFor(f)&&_ instanceof _o.IRI){let E=this.vocabularyMapper.generateMappedTriple(s,f,_);E&&i.push(E)}}if(f==="exo__Instance_class")for(let y of g){let v=this.valueToClassURI(y);if(v instanceof _o.IRI){let _=Yt.Namespace.RDF.term("type");i.push(new yr.Triple(s,_,v))}}if(f==="exo__Asset_label"){let y=Yt.Namespace.RDFS.term("label");for(let v of g)typeof v=="string"&&v.length>0&&i.push(new yr.Triple(s,y,new mn.Literal(v)))}}let o="exo__Instance_class"in t||"exo__Asset_uid"in t,c=t.exo__Asset_label,l="exo__Asset_label"in t&&c!==null&&c!==void 0&&!(typeof c=="string"&&c.trim()==="")&&!(Array.isArray(c)&&c.length===0);if(o&&!l){let f=Yt.Namespace.RDFS.term("label"),d=Yt.Namespace.EXO.term("Asset_label"),h=new mn.Literal(e.basename);i.push(new yr.Triple(s,f,h)),i.push(new yr.Triple(s,d,h))}i.push(...this.pendingExtraTriples),this.pendingExtraTriples=[];let u=await this.convertBodyWikilinks(e,s);return i.push(...u),i}async convertExo003Note(e,t){let r=Nn.Exo003Parser.parse(t);if(!r.success||!r.metadata)return[];let i=r.metadata,s=[];switch(i.metadata){case Nn.Exo003MetadataType.Namespace:break;case Nn.Exo003MetadataType.Anchor:s.push(...this.convertExo003Anchor(e,i));break;case Nn.Exo003MetadataType.BlankNode:s.push(...this.convertExo003BlankNode(e,i));break;case Nn.Exo003MetadataType.Statement:s.push(...this.convertExo003Statement(e,i));break;case Nn.Exo003MetadataType.Body:s.push(...await this.convertExo003Body(e,i));break}return s}convertExo003Anchor(e,t){let r=this.notePathToIRI(e.path),i=new _o.IRI(t.uri);return[new yr.Triple(r,Yt.Namespace.OWL.term("sameAs"),i),new yr.Triple(i,Yt.Namespace.OWL.term("sameAs"),r)]}convertExo003BlankNode(e,t){let r=this.notePathToIRI(e.path),i=t.uri.replace(/[^a-zA-Z0-9_-]/g,"_");return[new yr.Triple(r,Yt.Namespace.OWL.term("sameAs"),new i3.BlankNode(i))]}convertExo003Statement(e,t){let r=[];try{let i=this.createExo003ReferenceResolver(e),s=Nn.Exo003Parser.toTriple(t,i);r.push(s);let o=this.notePathToIRI(e.path);r.push(new yr.Triple(o,Yt.Namespace.RDF.term("value"),s.subject))}catch{}return r}async convertExo003Body(e,t){let r=[];try{let i=await this.vault.read(e),s=this.extractBodyContent(i),o=this.createExo003ReferenceResolver(e),c=o(t.subject),l=o(t.predicate);if(c.type==="literal")throw new Error("Body subject cannot be a literal");if(l.type!=="iri")throw new Error("Body predicate must be an IRI");let u=c.type==="iri"?new _o.IRI(c.value):new i3.BlankNode(c.value),f=new _o.IRI(l.value),d=Nn.Exo003Parser.toLiteral(t,s.trim());r.push(new yr.Triple(u,f,d));let h=this.notePathToIRI(e.path);r.push(new yr.Triple(h,Yt.Namespace.RDF.term("value"),u))}catch{}return r}createExo003ReferenceResolver(e){return t=>{let r=this.extractWikilink(t),i=r||t,s=this.vault.getFirstLinkpathDest(i,e.path);if(s){let o=this.vault.getFrontmatter(s);if(o&&Nn.Exo003Parser.isExo003Format(o)){let c=Nn.Exo003Parser.parse(o);if(c.success&&c.metadata){let l=c.metadata;if(l.metadata===Nn.Exo003MetadataType.Anchor||l.metadata===Nn.Exo003MetadataType.Namespace)return{type:"iri",value:l.uri};if(l.metadata===Nn.Exo003MetadataType.BlankNode)return{type:"blank",value:l.uri.replace(/[^a-zA-Z0-9_-]/g,"_")}}}return{type:"iri",value:this.notePathToIRI(s.path).value}}return!r&&t.includes("://")?{type:"iri",value:t}:{type:"literal",value:t}}}async convertVault(e={}){return(await this.convertVaultWithValidation({strict:!1,excludedFolders:e.excludedFolders})).triples}async convertVaultWithValidation(e={}){let t=this.vault.getAllFiles(),r=[],i=[],s=e.strict??!1,o=(0,QV.discoverFileSpaceExclusions)(this.vault);for(let u of o.warnings)this.logger.warn(`FileSpace discovery: ${u}`);let c=[...a3(e.excludedFolders),...o.prefixes],l=c.length===0?t:t.filter(u=>!c3(u.path,c));for(let u of l)try{let f=this.vault.getFrontmatter(u),d=f?this.validateExocortexAsset(f,u.basename):null;if(d){if(s)throw new Error(`Invariant violation in "${u.path}": ${d.message}`);i.push({path:u.path,reason:`Invariant violation: ${d.message}`}),this.logger.warn(`Skipping file with invariant violation: ${u.path}`,{code:d.code,property:d.property,reason:d.message});continue}let h=await this.convertNote(u);r.push(...h)}catch(f){let d=f instanceof Error?f.message:String(f);if(s)throw new Error(`Invalid IRI for file "${u.path}": ${d}`);i.push({path:u.path,reason:`Invalid IRI: ${d}`}),this.logger.warn(`Skipping file with invalid IRI: ${u.path}`,{reason:d})}return{triples:r,skippedFiles:i,summary:{total:l.length,indexed:l.length-i.length,skipped:i.length},fileSpaces:o}}static inferLabelFromBasename(e){return Yt.Namespace.fromPropertyKey(e)!==null?e:null}validateExocortexAsset(e,t){let r=a(d=>d==null?!0:typeof d=="string"?d.trim()==="":Array.isArray(d)?d.length===0||d.every(r):!1,"isEmpty");if(!("exo__Instance_class"in e||"exo__Asset_uid"in e))return null;let s=["exo__Asset_uid","exo__Instance_class"];for(let d of s){if(!(d in e))return{code:"MISSING_PROPERTY",property:d,message:`Required property "${d}" is missing`};if(r(e[d]))return{code:"EMPTY_PROPERTY",property:d,message:`Required property "${d}" is empty`}}let o=["ems__Effort_status","ems__Effort_parent","ems__Effort_lockedBy","ems__Effort_lockExpires","exo__Asset_updatedAt","ems__Effort_startTimestamp"];for(let d of o)if(d in e&&r(e[d]))return{code:"EMPTY_OPTIONAL_PROPERTY",property:d,message:`Optional property "${d}" is present but empty`};let c=e.exo__Instance_class,l=Array.isArray(c)?c:[c],u=null,f=!1;for(let d of l){if(typeof d!="string")continue;let h=this.removeQuotes(d),g=(this.extractWikilink(h)??h).trim();/^[a-z][a-zA-Z0-9]*__/.test(g)&&/[\s()]/.test(g)?u||(u={candidate:d}):f=!0}return u&&!f?{code:"INVALID_INSTANCE_CLASS_IRI",property:"exo__Instance_class",message:`Invalid Instance_class IRI: "${u.candidate}"`}:null}async validateVault(){let e=this.vault.getAllFiles(),t=[];for(let r of e){let i=(0,mv.vaultPathToIRI)(r.path);_o.IRI.isValidIRI(i)||t.push({path:r.path,reason:`Path "${r.path}" cannot be converted to a valid IRI`})}return t}notePathToIRI(e){return new _o.IRI((0,mv.vaultPathToIRI)(`${this.subjectIriPrefix}${e}`))}synthesizeWikilinkTargetIRI(e){return new _o.IRI((0,mv.vaultPathToIRI)(e))}isExocortexProperty(e){return Yt.Namespace.fromPropertyKey(e)!==null}propertyKeyToIRI(e){let t=Yt.Namespace.fromPropertyKey(e);if(!t)throw new Error(`Invalid property key: ${e}`);return t.namespace.term(t.localName)}emitTypeTripleForEnumInstance(e,t){let r=this.vault.getFrontmatter(t);if(!r)return;let i=r.exo__Instance_class,s=Array.isArray(i)?i[0]:i;if(typeof s!="string")return;let o=this.valueToClassURI(s);o instanceof _o.IRI&&(this.pendingExtraTriples.push(new yr.Triple(e,Yt.Namespace.RDF.term("type"),o)),this.pendingExtraTriples.push(new yr.Triple(e,Yt.Namespace.EXO.term("Instance_class"),o)))}async valueToRDFObject(e,t,r){if(typeof e=="string"){let i=this.removeQuotes(e),s=this.extractWikilink(i);if(s){let o=this.vault.getFirstLinkpathDest(s,t.path);if(o){let l=this.notePathToIRI(o.path),u=s.includes("|")?s.split("|")[0]:s;if(this.isUUID(u)){let d=new mn.Literal(u);if(r?.value.endsWith("#Grounding_targetValueRef")||r?.value.endsWith("#Grounding_targetValueSubstitution")||r?.value.endsWith("#Grounding_targetClass")||r?.value.endsWith("#Grounding_type")||r?.value.endsWith("#PropertyDefault_value"))return[l];let p=this.expandClassValue(o.basename);if(p)return this.emitTypeTripleForEnumInstance(p,o),[p];let g=this.vault.getFrontmatter(o);if(g){let E=g.exo__Asset_label;if(typeof E=="string"){let T=this.expandClassValue(E);if(T)return this.emitTypeTripleForEnumInstance(T,o),[T]}}let y=r?.value.endsWith("#Asset_prototype")||r?.value.endsWith("/Asset_prototype"),v=(process.env.EXOCORTEX_DUAL_STORAGE_PREDICATES??"").split(",").map(E=>E.trim()).filter(Boolean),_=v.length>0&&v.some(E=>r?.value.endsWith(`#${E}`));return y||_?[l,d]:[l]}let f=this.expandClassValue(o.basename);return f?(this.emitTypeTripleForEnumInstance(f,o),[f]):[l]}if(this.isClassReference(s)){let l=this.expandClassValue(s);if(l)return[l]}let c=s.includes("|")?s.split("|")[0]:s;return this.isUUID(c)?[this.synthesizeWikilinkTargetIRI(`${c}.md`)]:[new mn.Literal(i)]}if(this.isClassReference(i)){let o=this.expandClassValue(i);if(o)return[o]}return this.isISO8601DateTime(i)?[new mn.Literal(i,Yt.Namespace.XSD.term("dateTime"))]:[new mn.Literal(i)]}return typeof e=="boolean"?[new mn.Literal(e.toString())]:typeof e=="number"?[new mn.Literal(e.toString(),Yt.Namespace.XSD.term("decimal"))]:e instanceof Date?[new mn.Literal(e.toISOString(),Yt.Namespace.XSD.term("dateTime"))]:[new mn.Literal(String(e))]}isISO8601DateTime(e){return/^\d{4}-\d{2}-\d{2}T\d{2}:\d{2}:\d{2}(\.\d{1,3})?(Z|[+-]\d{2}:\d{2})?$/.test(e)}removeQuotes(e){let t=e.trim();return t.startsWith('"')&&t.endsWith('"')||t.startsWith("'")&&t.endsWith("'")?t.substring(1,t.length-1):e}extractWikilink(e){let t=e.match(/^\[\[([^\]]+)\]\]$/);if(!t)return null;let r=t[1];return r.includes("|")?r.split("|")[0]:r}extractWikilinkAlias(e){let t=e.match(/^\[\[([^\]]+)\]\]$/);if(!t)return null;let r=t[1],i=r.indexOf("|");return i>=0?r.substring(i+1).trim():null}valueToClassURI(e){if(typeof e!="string")return new mn.Literal(String(e));let t=this.removeQuotes(e),i=this.extractWikilink(t)||t,s=this.expandClassValue(i);if(s)return s;let o=this.extractWikilinkAlias(t);if(o){let c=this.expandClassValue(o);if(c)return c}if(this.isUUID(i)){let c=this.vault.getFirstLinkpathDest(i,"");if(c){let l=this.expandClassValue(c.basename);if(l)return l;let u=this.vault.getFrontmatter(c);if(u){let f=u.exo__Asset_label;if(typeof f=="string"){let d=this.expandClassValue(f);if(d)return d}}return this.notePathToIRI(c.path)}}return new mn.Literal(t)}isClassReference(e){return/\s/.test(e)?!1:Yt.Namespace.fromPropertyKey(e)!==null}isUUID(e){return/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(e)}expandClassValue(e){let t=this.removeQuotes(e),r=Yt.Namespace.fromPropertyKey(t);return!r||/[\s()]/.test(r.localName)?null:r.namespace.term(r.localName)}extractBodyContent(e){let t=/^---\r?\n[\s\S]*?\r?\n---\r?\n?/;return e.replace(t,"")}extractBodyWikilinks(e){let t=new Set,r,i=new RegExp(this.BODY_WIKILINK_PATTERN.source,"g");for(;(r=i.exec(e))!==null;)r[1]&&t.add(r[1]);return Array.from(t)}async convertBodyWikilinks(e,t){let r=[];try{let i=await this.vault.read(e),s=this.extractBodyContent(i),o=this.extractBodyWikilinks(s),c=Yt.Namespace.EXO.term("Asset_bodyLink");for(let l of o){let u=this.vault.getFirstLinkpathDest(l,e.path);if(u){let f=this.notePathToIRI(u.path);r.push(new yr.Triple(t,c,f))}else if(this.isClassReference(l)){let f=this.expandClassValue(l);f?r.push(new yr.Triple(t,c,f)):r.push(new yr.Triple(t,c,new mn.Literal(l)))}else r.push(new yr.Triple(t,c,new mn.Literal(l)))}}catch{}return r}};Hn.NoteToRDFConverter=kl;kl.SkippedFileInfo=class{constructor(n,e){this.path=n,this.reason=e}};kl.VaultValidationResult=class{constructor(n,e,t){this.triples=n,this.skippedFiles=e,this.summary=t}};kl.VaultValidationOptions=class{constructor(n=!1){this.strict=n}};Hn.NoteToRDFConverter=kl=WV([(0,pv.injectable)(),n3(0,(0,pv.inject)(s3.DI_TOKENS.IVaultAdapter)),n3(1,(0,pv.inject)(s3.DI_TOKENS.ILogger)),zV("design:paramtypes",[Object,Object,Object])],kl)});var _v=S(Jm=>{"use strict";Object.defineProperty(Jm,"__esModule",{value:!0});Jm.FilterContainsOptimizer=void 0;var YV=Ie(),JV=/[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}/i,yv=class{static{a(this,"FilterContainsOptimizer")}constructor(){this.tripleStore=null,this.lastOptimizationHints=[]}setTripleStore(e){this.tripleStore=e}getLastOptimizationHints(){return this.lastOptimizationHints}clearHints(){this.lastOptimizationHints=[]}async optimize(e){return this.clearHints(),this.optimizeRecursive(e)}optimizeSync(e,t){return this.clearHints(),this.optimizeSyncRecursive(e,t)}async optimizeRecursive(e){return e.type==="filter"?this.optimizeFilter(e):e.type==="join"?{type:"join",left:await this.optimizeRecursive(e.left),right:await this.optimizeRecursive(e.right)}:e.type==="leftjoin"?{...e,left:await this.optimizeRecursive(e.left),right:await this.optimizeRecursive(e.right)}:e.type==="union"?{type:"union",left:await this.optimizeRecursive(e.left),right:await this.optimizeRecursive(e.right)}:e.type==="minus"?{...e,left:await this.optimizeRecursive(e.left),right:await this.optimizeRecursive(e.right)}:e.type==="project"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="orderby"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="slice"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="distinct"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="reduced"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="group"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="extend"?{...e,input:await this.optimizeRecursive(e.input)}:e}optimizeSyncRecursive(e,t){return e.type==="filter"?this.optimizeFilterSync(e,t):e.type==="join"?{type:"join",left:this.optimizeSyncRecursive(e.left,t),right:this.optimizeSyncRecursive(e.right,t)}:e.type==="leftjoin"?{...e,left:this.optimizeSyncRecursive(e.left,t),right:this.optimizeSyncRecursive(e.right,t)}:e.type==="union"?{type:"union",left:this.optimizeSyncRecursive(e.left,t),right:this.optimizeSyncRecursive(e.right,t)}:e.type==="minus"?{...e,left:this.optimizeSyncRecursive(e.left,t),right:this.optimizeSyncRecursive(e.right,t)}:e.type==="project"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="orderby"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="slice"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="distinct"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="reduced"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="group"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="extend"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e}async optimizeFilter(e){let t=this.detectContainsUUIDPattern(e.expression);if(!t)return{type:"filter",expression:e.expression,input:await this.optimizeRecursive(e.input)};let r=[];return this.tripleStore&&(r=await this.findSubjectsContainingUUID(t.uuid)),this.rewriteFilter(e,t,r)}optimizeFilterSync(e,t){let r=this.detectContainsUUIDPattern(e.expression);if(!r)return{type:"filter",expression:e.expression,input:this.optimizeSyncRecursive(e.input,t)};let i=t?t.filter(s=>s.includes(r.uuid)):[];return this.rewriteFilter(e,r,i)}rewriteFilter(e,t,r){if(this.lastOptimizationHints.push({type:"uuid-index-lookup",originalPattern:`FILTER(CONTAINS(STR(?${t.variable}), "${t.uuid}"))`,suggestedRewrite:r.length===1?`VALUES ?${t.variable} { <${r[0]}> }`:r.length>1?`VALUES ?${t.variable} { ${r.map(i=>`<${i}>`).join(" ")} }`:"No matching URIs found for UUID",estimatedSpeedup:r.length>0?"O(n) \u2192 O(1)":"N/A",matchedUri:r.length===1?r[0]:void 0}),r.length===0)return{type:"filter",expression:e.expression,input:this.optimizeSyncRecursive(e.input)};if(r.length===1){let i=this.injectSubjectConstraint(e.input,t.variable,r[0]);if(i!==e.input)return i}return this.createValuesJoin(e,t,r)}detectContainsUUIDPattern(e){if(e.type==="function"||e.type==="functionCall"){let t=e;if((typeof t.function=="string"?t.function.toLowerCase():t.function?.value?.toLowerCase()??"")==="contains"&&t.args.length===2)return this.analyzeContainsArgs(t.args[0],t.args[1],e)}if(e.type==="logical"&&e.operator==="&&")for(let t of e.operands){let r=this.detectContainsUUIDPattern(t);if(r)return r}return null}analyzeContainsArgs(e,t,r){let i=null;if(e.type==="function"||e.type==="functionCall"){let s=e;if((typeof s.function=="string"?s.function.toLowerCase():s.function?.value?.toLowerCase()??"")==="str"&&s.args.length===1){let c=s.args[0];c.type==="variable"&&(i=c.name)}}if(!i&&e.type==="variable"&&(i=e.name),!i)return null;if(t.type==="literal"){let c=String(t.value).match(JV);if(c)return{variable:i,uuid:c[0].toLowerCase(),originalExpression:r}}return null}async findSubjectsContainingUUID(e){if(!this.tripleStore)return[];if(this.tripleStore.findSubjectsByUUID)return(await this.tripleStore.findSubjectsByUUID(e)).map(s=>s.value);let t=await this.tripleStore.subjects(),r=[];for(let i of t)i instanceof YV.IRI&&i.value.toLowerCase().includes(e.toLowerCase())&&r.push(i.value);return r}injectSubjectConstraint(e,t,r){if(e.type==="bgp"){let i=e.triples.map(o=>o.subject.type==="variable"&&o.subject.value===t?{...o,subject:{type:"iri",value:r}}:o);if(i.some((o,c)=>o.subject!==e.triples[c].subject))return{type:"bgp",triples:i}}if(e.type==="join"){let i=this.injectSubjectConstraint(e.left,t,r),s=this.injectSubjectConstraint(e.right,t,r);if(i!==e.left||s!==e.right)return{type:"join",left:i,right:s}}if(e.type==="filter"){let i=this.injectSubjectConstraint(e.input,t,r);if(i!==e.input)return{...e,input:i}}return e}createValuesJoin(e,t,r){return{type:"join",left:{type:"values",variables:[t.variable],bindings:r.map(o=>({[t.variable]:{type:"iri",value:o}}))},right:this.optimizeSyncRecursive(e.input)}}analyzeQuery(e){let t=[];return this.analyzeRecursive(e,t),t}analyzeRecursive(e,t){if(e.type==="filter"){let r=this.detectContainsUUIDPattern(e.expression);r&&t.push({type:"uuid-index-lookup",originalPattern:`FILTER(CONTAINS(STR(?${r.variable}), "${r.uuid}"))`,suggestedRewrite:`Use --optimize flag or rewrite as VALUES ?${r.variable} { <uri-containing-uuid> }`,estimatedSpeedup:"O(n) \u2192 O(1) with UUID index lookup"}),this.analyzeRecursive(e.input,t);return}e.type==="join"?(this.analyzeRecursive(e.left,t),this.analyzeRecursive(e.right,t)):e.type==="leftjoin"?(this.analyzeRecursive(e.left,t),this.analyzeRecursive(e.right,t)):e.type==="union"?(this.analyzeRecursive(e.left,t),this.analyzeRecursive(e.right,t)):e.type==="minus"?(this.analyzeRecursive(e.left,t),this.analyzeRecursive(e.right,t)):e.type==="project"?this.analyzeRecursive(e.input,t):e.type==="orderby"?this.analyzeRecursive(e.input,t):e.type==="slice"?this.analyzeRecursive(e.input,t):e.type==="distinct"?this.analyzeRecursive(e.input,t):e.type==="reduced"?this.analyzeRecursive(e.input,t):e.type==="group"?this.analyzeRecursive(e.input,t):e.type==="extend"&&this.analyzeRecursive(e.input,t)}};Jm.FilterContainsOptimizer=yv});var l3=S(Zm=>{"use strict";Object.defineProperty(Zm,"__esModule",{value:!0});Zm.AlgebraOptimizer=void 0;var ZV=_v(),bv=class{static{a(this,"AlgebraOptimizer")}constructor(){this.stats=new Map,this.tripleStore=null,this.filterContainsOptimizer=new ZV.FilterContainsOptimizer}setTripleStore(e){this.tripleStore=e,this.filterContainsOptimizer.setTripleStore(e)}getOptimizationHints(){return this.filterContainsOptimizer.getLastOptimizationHints()}analyzeQuery(e){return this.filterContainsOptimizer.analyzeQuery(e)}optimize(e){let t=e;return t=this.eliminateEmptyBGPInFilterJoin(t),t=this.filterPushDown(t),t=this.joinReordering(t),t}async optimizeAsync(e){let t=e;return t=this.eliminateEmptyBGPInFilterJoin(t),this.tripleStore&&(t=await this.filterContainsOptimizer.optimize(t)),t=this.filterPushDown(t),t=this.joinReordering(t),t}optimizeWithSubjects(e,t){let r=e;return r=this.eliminateEmptyBGPInFilterJoin(r),r=this.filterContainsOptimizer.optimizeSync(r,t),r=this.filterPushDown(r),r=this.joinReordering(r),r}eliminateEmptyBGPInFilterJoin(e){if(e.type==="join"){if(e.left.type==="filter"){let t=e.left;if(t.input.type==="bgp"&&t.input.triples.length===0)return{type:"filter",expression:t.expression,input:this.eliminateEmptyBGPInFilterJoin(e.right)}}if(e.right.type==="filter"){let t=e.right;if(t.input.type==="bgp"&&t.input.triples.length===0)return{type:"filter",expression:t.expression,input:this.eliminateEmptyBGPInFilterJoin(e.left)}}return{type:"join",left:this.eliminateEmptyBGPInFilterJoin(e.left),right:this.eliminateEmptyBGPInFilterJoin(e.right)}}return e.type==="filter"?{...e,input:this.eliminateEmptyBGPInFilterJoin(e.input)}:e.type==="leftjoin"?{...e,left:this.eliminateEmptyBGPInFilterJoin(e.left),right:this.eliminateEmptyBGPInFilterJoin(e.right)}:e.type==="union"?{...e,left:this.eliminateEmptyBGPInFilterJoin(e.left),right:this.eliminateEmptyBGPInFilterJoin(e.right)}:e.type==="minus"?{...e,left:this.eliminateEmptyBGPInFilterJoin(e.left),right:this.eliminateEmptyBGPInFilterJoin(e.right)}:e.type==="project"?{...e,input:this.eliminateEmptyBGPInFilterJoin(e.input)}:e.type==="orderby"?{...e,input:this.eliminateEmptyBGPInFilterJoin(e.input)}:e.type==="slice"?{...e,input:this.eliminateEmptyBGPInFilterJoin(e.input)}:e.type==="distinct"?{...e,input:this.eliminateEmptyBGPInFilterJoin(e.input)}:e}filterPushDown(e){return e.type==="filter"?this.pushDownFilter(e):e.type==="join"?{type:"join",left:this.filterPushDown(e.left),right:this.filterPushDown(e.right)}:e.type==="leftjoin"?{...e,left:this.filterPushDown(e.left),right:this.filterPushDown(e.right)}:e.type==="union"?{type:"union",left:this.filterPushDown(e.left),right:this.filterPushDown(e.right)}:e.type==="minus"?{...e,left:this.filterPushDown(e.left),right:this.filterPushDown(e.right)}:e.type==="project"?{...e,input:this.filterPushDown(e.input)}:e.type==="orderby"?{...e,input:this.filterPushDown(e.input)}:e.type==="slice"?{...e,input:this.filterPushDown(e.input)}:e.type==="distinct"?{...e,input:this.filterPushDown(e.input)}:e}pushDownFilter(e){let t=e.input;if(t.type==="join"){let r=this.getFilterVariables(e.expression),i=this.getOperationVariables(t.left),s=this.getOperationVariables(t.right),o=r.every(l=>i.has(l)),c=r.every(l=>s.has(l));return o&&!c?{type:"join",left:{type:"filter",expression:e.expression,input:this.filterPushDown(t.left)},right:this.filterPushDown(t.right)}:c&&!o?{type:"join",left:this.filterPushDown(t.left),right:{type:"filter",expression:e.expression,input:this.filterPushDown(t.right)}}:{type:"filter",expression:e.expression,input:{type:"join",left:this.filterPushDown(t.left),right:this.filterPushDown(t.right)}}}return t.type==="union"?{type:"union",left:{type:"filter",expression:e.expression,input:this.filterPushDown(t.left)},right:{type:"filter",expression:e.expression,input:this.filterPushDown(t.right)}}:{type:"filter",expression:e.expression,input:this.filterPushDown(t)}}getFilterVariables(e){let t=[];if(e.type==="variable")t.push(e.name);else if(e.type==="comparison")t.push(...this.getFilterVariables(e.left)),t.push(...this.getFilterVariables(e.right));else if(e.type==="logical")for(let r of e.operands)t.push(...this.getFilterVariables(r));else if(e.type==="function")for(let r of e.args)t.push(...this.getFilterVariables(r));return Array.from(new Set(t))}getOperationVariables(e){let t=new Set;if(e.type==="bgp")for(let r of e.triples)r.subject.type==="variable"&&t.add(r.subject.value),r.predicate.type==="variable"&&t.add(r.predicate.value),r.object.type==="variable"&&t.add(r.object.value);else if(e.type==="join"){let r=this.getOperationVariables(e.left),i=this.getOperationVariables(e.right);return new Set([...r,...i])}else{if(e.type==="filter")return this.getOperationVariables(e.input);if(e.type==="leftjoin"){let r=this.getOperationVariables(e.left),i=this.getOperationVariables(e.right);return new Set([...r,...i])}else if(e.type==="union"){let r=this.getOperationVariables(e.left),i=this.getOperationVariables(e.right);return new Set([...r,...i])}else{if(e.type==="minus")return this.getOperationVariables(e.left);if(e.type==="project")return new Set(e.variables)}}return t}joinReordering(e){return e.type==="join"?this.reorderJoin(e):e.type==="filter"?{...e,input:this.joinReordering(e.input)}:e.type==="leftjoin"?{...e,left:this.joinReordering(e.left),right:this.joinReordering(e.right)}:e.type==="union"?{...e,left:this.joinReordering(e.left),right:this.joinReordering(e.right)}:e.type==="minus"?{...e,left:this.joinReordering(e.left),right:this.joinReordering(e.right)}:e.type==="project"?{...e,input:this.joinReordering(e.input)}:e.type==="orderby"?{...e,input:this.joinReordering(e.input)}:e.type==="slice"?{...e,input:this.joinReordering(e.input)}:e.type==="distinct"?{...e,input:this.joinReordering(e.input)}:e}reorderJoin(e){let t=this.isConstrained(e.left),r=this.isConstrained(e.right);if(r&&!t)return{type:"join",left:this.joinReordering(e.right),right:this.joinReordering(e.left)};if(t&&!r)return{type:"join",left:this.joinReordering(e.left),right:this.joinReordering(e.right)};let i=this.estimateCost(e.left);return this.estimateCost(e.right)<i?{type:"join",left:this.joinReordering(e.right),right:this.joinReordering(e.left)}:{type:"join",left:this.joinReordering(e.left),right:this.joinReordering(e.right)}}isConstrained(e){return e.type==="values"?!0:e.type==="bgp"?e.triples.some(t=>t.object.type!=="variable"||t.subject.type!=="variable"):e.type==="filter"?this.isConstrained(e.input):e.type==="join"?this.isConstrained(e.left)||this.isConstrained(e.right):e.type==="union"?this.isConstrained(e.left)&&this.isConstrained(e.right):!1}estimateCost(e){if(e.type==="bgp"){let t=0;for(let r of e.triples){let i=10;r.subject.type==="variable"&&(i*=10),r.predicate.type==="variable"&&(i*=20),r.object.type==="variable"&&(i*=5),t+=i}return t}if(e.type==="filter")return this.estimateCost(e.input)*.3;if(e.type==="join"){let t=this.estimateCost(e.left),r=this.estimateCost(e.right);return e.left.type==="values"||e.right.type==="values"?Math.min(t,r)*2:t*r}if(e.type==="leftjoin")return this.estimateCost(e.left)+this.estimateCost(e.right)*.5;if(e.type==="union")return this.estimateCost(e.left)+this.estimateCost(e.right);if(e.type==="values"){let t=e.bindings;return Array.isArray(t)?t.length*5:10}return e.type==="minus"?this.estimateCost(e.left)+this.estimateCost(e.right)*.3:100}setStatistics(e,t){this.stats.set(e,t)}getStatistics(e){return this.stats.get(e)}};Zm.AlgebraOptimizer=bv});var u3=S(eg=>{"use strict";Object.defineProperty(eg,"__esModule",{value:!0});eg.AlgebraSerializer=void 0;var Sv=class{static{a(this,"AlgebraSerializer")}toString(e,t=0){let r="  ".repeat(t);switch(e.type){case"bgp":return`${r}BGP [
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mn.Literal(e.basename));if(Nn.Exo003Parser.isExo003Format(t)){let o=await this.convertExo003Note(e,t);return[s,...o]}return this.convertLegacyNote(e,t,s)}async convertLegacyNote(e,t,r){this.pendingExtraTriples=[];let i=[r],s=this.notePathToIRI(e.path);for(let[f,d]of Object.entries(t)){let h=o3.has(f)?`exo__Asset_${f}`:f;if(!this.isExocortexProperty(h))continue;let p=this.propertyKeyToIRI(h),g=Array.isArray(d)?d:[d];for(let y of g)if(!((f==="exo__Asset_label"||o3.has(f))&&(y==null||typeof y=="string"&&y.trim()==="")))if(f==="exo__Instance_class"){let v=this.valueToClassURI(y);i.push(new yr.Triple(s,p,v))}else{let v=await this.valueToRDFObject(y,e,p);for(let _ of v)if(i.push(new yr.Triple(s,p,_)),this.vocabularyMapper.hasMappingFor(f)&&_ instanceof _o.IRI){let E=this.vocabularyMapper.generateMappedTriple(s,f,_);E&&i.push(E)}}if(f==="exo__Instance_class")for(let y of g){let v=this.valueToClassURI(y);if(v instanceof _o.IRI){let _=Yt.Namespace.RDF.term("type");i.push(new yr.Triple(s,_,v))}}if(f==="exo__Asset_label"){let y=Yt.Namespace.RDFS.term("label");for(let v of g)typeof v=="string"&&v.length>0&&i.push(new yr.Triple(s,y,new mn.Literal(v)))}}let o="exo__Instance_class"in t||"exo__Asset_uid"in t,c=t.exo__Asset_label,l="exo__Asset_label"in t&&c!==null&&c!==void 0&&!(typeof c=="string"&&c.trim()==="")&&!(Array.isArray(c)&&c.length===0);if(o&&!l){let f=Yt.Namespace.RDFS.term("label"),d=Yt.Namespace.EXO.term("Asset_label"),h=new mn.Literal(e.basename);i.push(new yr.Triple(s,f,h)),i.push(new yr.Triple(s,d,h))}i.push(...this.pendingExtraTriples),this.pendingExtraTriples=[];let u=await this.convertBodyWikilinks(e,s);return i.push(...u),i}async convertExo003Note(e,t){let r=Nn.Exo003Parser.parse(t);if(!r.success||!r.metadata)return[];let i=r.metadata,s=[];switch(i.metadata){case Nn.Exo003MetadataType.Namespace:break;case Nn.Exo003MetadataType.Anchor:s.push(...this.convertExo003Anchor(e,i));break;case Nn.Exo003MetadataType.BlankNode:s.push(...this.convertExo003BlankNode(e,i));break;case Nn.Exo003MetadataType.Statement:s.push(...this.convertExo003Statement(e,i));break;case Nn.Exo003MetadataType.Body:s.push(...await this.convertExo003Body(e,i));break}return s}convertExo003Anchor(e,t){let r=this.notePathToIRI(e.path),i=new _o.IRI(t.uri);return[new yr.Triple(r,Yt.Namespace.OWL.term("sameAs"),i),new yr.Triple(i,Yt.Namespace.OWL.term("sameAs"),r)]}convertExo003BlankNode(e,t){let r=this.notePathToIRI(e.path),i=t.uri.replace(/[^a-zA-Z0-9_-]/g,"_");return[new yr.Triple(r,Yt.Namespace.OWL.term("sameAs"),new i3.BlankNode(i))]}convertExo003Statement(e,t){let r=[];try{let i=this.createExo003ReferenceResolver(e),s=Nn.Exo003Parser.toTriple(t,i);r.push(s);let o=this.notePathToIRI(e.path);r.push(new yr.Triple(o,Yt.Namespace.RDF.term("value"),s.subject))}catch{}return r}async convertExo003Body(e,t){let r=[];try{let i=await this.vault.read(e),s=this.extractBodyContent(i),o=this.createExo003ReferenceResolver(e),c=o(t.subject),l=o(t.predicate);if(c.type==="literal")throw new Error("Body subject cannot be a literal");if(l.type!=="iri")throw new Error("Body predicate must be an IRI");let u=c.type==="iri"?new _o.IRI(c.value):new i3.BlankNode(c.value),f=new _o.IRI(l.value),d=Nn.Exo003Parser.toLiteral(t,s.trim());r.push(new yr.Triple(u,f,d));let h=this.notePathToIRI(e.path);r.push(new yr.Triple(h,Yt.Namespace.RDF.term("value"),u))}catch{}return r}createExo003ReferenceResolver(e){return t=>{let r=this.extractWikilink(t),i=r||t,s=this.vault.getFirstLinkpathDest(i,e.path);if(s){let o=this.vault.getFrontmatter(s);if(o&&Nn.Exo003Parser.isExo003Format(o)){let c=Nn.Exo003Parser.parse(o);if(c.success&&c.metadata){let l=c.metadata;if(l.metadata===Nn.Exo003MetadataType.Anchor||l.metadata===Nn.Exo003MetadataType.Namespace)return{type:"iri",value:l.uri};if(l.metadata===Nn.Exo003MetadataType.BlankNode)return{type:"blank",value:l.uri.replace(/[^a-zA-Z0-9_-]/g,"_")}}}return{type:"iri",value:this.notePathToIRI(s.path).value}}return!r&&t.includes("://")?{type:"iri",value:t}:{type:"literal",value:t}}}async convertVault(e={}){return(await this.convertVaultWithValidation({strict:!1,excludedFolders:e.excludedFolders})).triples}async convertVaultWithValidation(e={}){let t=this.vault.getAllFiles(),r=[],i=[],s=e.strict??!1,o=0,c=0,l=(0,QV.discoverFileSpaceExclusions)(this.vault);for(let d of l.warnings)this.logger.warn(`FileSpace discovery: ${d}`);let u=[...a3(e.excludedFolders),...l.prefixes],f=u.length===0?t:t.filter(d=>!c3(d.path,u));for(let d of f)try{let h=this.vault.getFrontmatter(d),p=h?this.validateExocortexAsset(h,d.basename):null;if(p){if(s)throw new Error(`Invariant violation in "${d.path}": ${p.message}`);i.push({path:d.path,reason:`Invariant violation: ${p.message}`}),o++,this.logger.info(`Skipping file with invariant violation: ${d.path}`,{code:p.code,property:p.property,reason:p.message});continue}let g=await this.convertNote(d);r.push(...g)}catch(h){let p=h instanceof Error?h.message:String(h);if(s)throw new Error(`Invalid IRI for file "${d.path}": ${p}`);i.push({path:d.path,reason:`Invalid IRI: ${p}`}),c++,this.logger.info(`Skipping file with invalid IRI: ${d.path}`,{reason:p})}return o>0&&this.logger.warn(`Skipped ${o} file${o===1?"":"s"} with invariant violations during indexing (paths in developer console)`,{count:o}),c>0&&this.logger.warn(`Skipped ${c} file${c===1?"":"s"} with invalid IRI during indexing (paths in developer console)`,{count:c}),{triples:r,skippedFiles:i,summary:{total:f.length,indexed:f.length-i.length,skipped:i.length},fileSpaces:l}}static inferLabelFromBasename(e){return Yt.Namespace.fromPropertyKey(e)!==null?e:null}validateExocortexAsset(e,t){let r=a(d=>d==null?!0:typeof d=="string"?d.trim()==="":Array.isArray(d)?d.length===0||d.every(r):!1,"isEmpty");if(!("exo__Instance_class"in e||"exo__Asset_uid"in e))return null;let s=["exo__Asset_uid","exo__Instance_class"];for(let d of s){if(!(d in e))return{code:"MISSING_PROPERTY",property:d,message:`Required property "${d}" is missing`};if(r(e[d]))return{code:"EMPTY_PROPERTY",property:d,message:`Required property "${d}" is empty`}}let o=["ems__Effort_status","ems__Effort_parent","ems__Effort_lockedBy","ems__Effort_lockExpires","exo__Asset_updatedAt","ems__Effort_startTimestamp"];for(let d of o)if(d in e&&r(e[d]))return{code:"EMPTY_OPTIONAL_PROPERTY",property:d,message:`Optional property "${d}" is present but empty`};let c=e.exo__Instance_class,l=Array.isArray(c)?c:[c],u=null,f=!1;for(let d of l){if(typeof d!="string")continue;let h=this.removeQuotes(d),g=(this.extractWikilink(h)??h).trim();/^[a-z][a-zA-Z0-9]*__/.test(g)&&/[\s()]/.test(g)?u||(u={candidate:d}):f=!0}return u&&!f?{code:"INVALID_INSTANCE_CLASS_IRI",property:"exo__Instance_class",message:`Invalid Instance_class IRI: "${u.candidate}"`}:null}async validateVault(){let e=this.vault.getAllFiles(),t=[];for(let r of e){let i=(0,mv.vaultPathToIRI)(r.path);_o.IRI.isValidIRI(i)||t.push({path:r.path,reason:`Path "${r.path}" cannot be converted to a valid IRI`})}return t}notePathToIRI(e){return new _o.IRI((0,mv.vaultPathToIRI)(`${this.subjectIriPrefix}${e}`))}synthesizeWikilinkTargetIRI(e){return new _o.IRI((0,mv.vaultPathToIRI)(e))}isExocortexProperty(e){return Yt.Namespace.fromPropertyKey(e)!==null}propertyKeyToIRI(e){let t=Yt.Namespace.fromPropertyKey(e);if(!t)throw new Error(`Invalid property key: ${e}`);return t.namespace.term(t.localName)}emitTypeTripleForEnumInstance(e,t){let r=this.vault.getFrontmatter(t);if(!r)return;let i=r.exo__Instance_class,s=Array.isArray(i)?i[0]:i;if(typeof s!="string")return;let o=this.valueToClassURI(s);o instanceof _o.IRI&&(this.pendingExtraTriples.push(new yr.Triple(e,Yt.Namespace.RDF.term("type"),o)),this.pendingExtraTriples.push(new yr.Triple(e,Yt.Namespace.EXO.term("Instance_class"),o)))}async valueToRDFObject(e,t,r){if(typeof e=="string"){let i=this.removeQuotes(e),s=this.extractWikilink(i);if(s){let o=this.vault.getFirstLinkpathDest(s,t.path);if(o){let l=this.notePathToIRI(o.path),u=s.includes("|")?s.split("|")[0]:s;if(this.isUUID(u)){let d=new mn.Literal(u);if(r?.value.endsWith("#Grounding_targetValueRef")||r?.value.endsWith("#Grounding_targetValueSubstitution")||r?.value.endsWith("#Grounding_targetClass")||r?.value.endsWith("#Grounding_type")||r?.value.endsWith("#PropertyDefault_value"))return[l];let p=this.expandClassValue(o.basename);if(p)return this.emitTypeTripleForEnumInstance(p,o),[p];let g=this.vault.getFrontmatter(o);if(g){let E=g.exo__Asset_label;if(typeof E=="string"){let T=this.expandClassValue(E);if(T)return this.emitTypeTripleForEnumInstance(T,o),[T]}}let y=r?.value.endsWith("#Asset_prototype")||r?.value.endsWith("/Asset_prototype"),v=(process.env.EXOCORTEX_DUAL_STORAGE_PREDICATES??"").split(",").map(E=>E.trim()).filter(Boolean),_=v.length>0&&v.some(E=>r?.value.endsWith(`#${E}`));return y||_?[l,d]:[l]}let f=this.expandClassValue(o.basename);return f?(this.emitTypeTripleForEnumInstance(f,o),[f]):[l]}if(this.isClassReference(s)){let l=this.expandClassValue(s);if(l)return[l]}let c=s.includes("|")?s.split("|")[0]:s;return this.isUUID(c)?[this.synthesizeWikilinkTargetIRI(`${c}.md`)]:[new mn.Literal(i)]}if(this.isClassReference(i)){let o=this.expandClassValue(i);if(o)return[o]}return this.isISO8601DateTime(i)?[new mn.Literal(i,Yt.Namespace.XSD.term("dateTime"))]:[new mn.Literal(i)]}return typeof e=="boolean"?[new mn.Literal(e.toString())]:typeof e=="number"?[new mn.Literal(e.toString(),Yt.Namespace.XSD.term("decimal"))]:e instanceof Date?[new mn.Literal(e.toISOString(),Yt.Namespace.XSD.term("dateTime"))]:[new mn.Literal(String(e))]}isISO8601DateTime(e){return/^\d{4}-\d{2}-\d{2}T\d{2}:\d{2}:\d{2}(\.\d{1,3})?(Z|[+-]\d{2}:\d{2})?$/.test(e)}removeQuotes(e){let t=e.trim();return t.startsWith('"')&&t.endsWith('"')||t.startsWith("'")&&t.endsWith("'")?t.substring(1,t.length-1):e}extractWikilink(e){let t=e.match(/^\[\[([^\]]+)\]\]$/);if(!t)return null;let r=t[1];return r.includes("|")?r.split("|")[0]:r}extractWikilinkAlias(e){let t=e.match(/^\[\[([^\]]+)\]\]$/);if(!t)return null;let r=t[1],i=r.indexOf("|");return i>=0?r.substring(i+1).trim():null}valueToClassURI(e){if(typeof e!="string")return new mn.Literal(String(e));let t=this.removeQuotes(e),i=this.extractWikilink(t)||t,s=this.expandClassValue(i);if(s)return s;let o=this.extractWikilinkAlias(t);if(o){let c=this.expandClassValue(o);if(c)return c}if(this.isUUID(i)){let c=this.vault.getFirstLinkpathDest(i,"");if(c){let l=this.expandClassValue(c.basename);if(l)return l;let u=this.vault.getFrontmatter(c);if(u){let f=u.exo__Asset_label;if(typeof f=="string"){let d=this.expandClassValue(f);if(d)return d}}return this.notePathToIRI(c.path)}}return new mn.Literal(t)}isClassReference(e){return/\s/.test(e)?!1:Yt.Namespace.fromPropertyKey(e)!==null}isUUID(e){return/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(e)}expandClassValue(e){let t=this.removeQuotes(e),r=Yt.Namespace.fromPropertyKey(t);return!r||/[\s()]/.test(r.localName)?null:r.namespace.term(r.localName)}extractBodyContent(e){let t=/^---\r?\n[\s\S]*?\r?\n---\r?\n?/;return e.replace(t,"")}extractBodyWikilinks(e){let t=new Set,r,i=new RegExp(this.BODY_WIKILINK_PATTERN.source,"g");for(;(r=i.exec(e))!==null;)r[1]&&t.add(r[1]);return Array.from(t)}async convertBodyWikilinks(e,t){let r=[];try{let i=await this.vault.read(e),s=this.extractBodyContent(i),o=this.extractBodyWikilinks(s),c=Yt.Namespace.EXO.term("Asset_bodyLink");for(let l of o){let u=this.vault.getFirstLinkpathDest(l,e.path);if(u){let f=this.notePathToIRI(u.path);r.push(new yr.Triple(t,c,f))}else if(this.isClassReference(l)){let f=this.expandClassValue(l);f?r.push(new yr.Triple(t,c,f)):r.push(new yr.Triple(t,c,new mn.Literal(l)))}else r.push(new yr.Triple(t,c,new mn.Literal(l)))}}catch{}return r}};Hn.NoteToRDFConverter=kl;kl.SkippedFileInfo=class{constructor(n,e){this.path=n,this.reason=e}};kl.VaultValidationResult=class{constructor(n,e,t){this.triples=n,this.skippedFiles=e,this.summary=t}};kl.VaultValidationOptions=class{constructor(n=!1){this.strict=n}};Hn.NoteToRDFConverter=kl=WV([(0,pv.injectable)(),n3(0,(0,pv.inject)(s3.DI_TOKENS.IVaultAdapter)),n3(1,(0,pv.inject)(s3.DI_TOKENS.ILogger)),zV("design:paramtypes",[Object,Object,Object])],kl)});var _v=S(Jm=>{"use strict";Object.defineProperty(Jm,"__esModule",{value:!0});Jm.FilterContainsOptimizer=void 0;var YV=Ie(),JV=/[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}/i,yv=class{static{a(this,"FilterContainsOptimizer")}constructor(){this.tripleStore=null,this.lastOptimizationHints=[]}setTripleStore(e){this.tripleStore=e}getLastOptimizationHints(){return this.lastOptimizationHints}clearHints(){this.lastOptimizationHints=[]}async optimize(e){return this.clearHints(),this.optimizeRecursive(e)}optimizeSync(e,t){return this.clearHints(),this.optimizeSyncRecursive(e,t)}async optimizeRecursive(e){return e.type==="filter"?this.optimizeFilter(e):e.type==="join"?{type:"join",left:await this.optimizeRecursive(e.left),right:await this.optimizeRecursive(e.right)}:e.type==="leftjoin"?{...e,left:await this.optimizeRecursive(e.left),right:await this.optimizeRecursive(e.right)}:e.type==="union"?{type:"union",left:await this.optimizeRecursive(e.left),right:await this.optimizeRecursive(e.right)}:e.type==="minus"?{...e,left:await this.optimizeRecursive(e.left),right:await this.optimizeRecursive(e.right)}:e.type==="project"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="orderby"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="slice"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="distinct"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="reduced"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="group"?{...e,input:await this.optimizeRecursive(e.input)}:e.type==="extend"?{...e,input:await this.optimizeRecursive(e.input)}:e}optimizeSyncRecursive(e,t){return e.type==="filter"?this.optimizeFilterSync(e,t):e.type==="join"?{type:"join",left:this.optimizeSyncRecursive(e.left,t),right:this.optimizeSyncRecursive(e.right,t)}:e.type==="leftjoin"?{...e,left:this.optimizeSyncRecursive(e.left,t),right:this.optimizeSyncRecursive(e.right,t)}:e.type==="union"?{type:"union",left:this.optimizeSyncRecursive(e.left,t),right:this.optimizeSyncRecursive(e.right,t)}:e.type==="minus"?{...e,left:this.optimizeSyncRecursive(e.left,t),right:this.optimizeSyncRecursive(e.right,t)}:e.type==="project"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="orderby"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="slice"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="distinct"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="reduced"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="group"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e.type==="extend"?{...e,input:this.optimizeSyncRecursive(e.input,t)}:e}async optimizeFilter(e){let t=this.detectContainsUUIDPattern(e.expression);if(!t)return{type:"filter",expression:e.expression,input:await this.optimizeRecursive(e.input)};let r=[];return this.tripleStore&&(r=await this.findSubjectsContainingUUID(t.uuid)),this.rewriteFilter(e,t,r)}optimizeFilterSync(e,t){let r=this.detectContainsUUIDPattern(e.expression);if(!r)return{type:"filter",expression:e.expression,input:this.optimizeSyncRecursive(e.input,t)};let i=t?t.filter(s=>s.includes(r.uuid)):[];return this.rewriteFilter(e,r,i)}rewriteFilter(e,t,r){if(this.lastOptimizationHints.push({type:"uuid-index-lookup",originalPattern:`FILTER(CONTAINS(STR(?${t.variable}), "${t.uuid}"))`,suggestedRewrite:r.length===1?`VALUES ?${t.variable} { <${r[0]}> }`:r.length>1?`VALUES ?${t.variable} { ${r.map(i=>`<${i}>`).join(" ")} }`:"No matching URIs found for UUID",estimatedSpeedup:r.length>0?"O(n) \u2192 O(1)":"N/A",matchedUri:r.length===1?r[0]:void 0}),r.length===0)return{type:"filter",expression:e.expression,input:this.optimizeSyncRecursive(e.input)};if(r.length===1){let i=this.injectSubjectConstraint(e.input,t.variable,r[0]);if(i!==e.input)return i}return this.createValuesJoin(e,t,r)}detectContainsUUIDPattern(e){if(e.type==="function"||e.type==="functionCall"){let t=e;if((typeof t.function=="string"?t.function.toLowerCase():t.function?.value?.toLowerCase()??"")==="contains"&&t.args.length===2)return this.analyzeContainsArgs(t.args[0],t.args[1],e)}if(e.type==="logical"&&e.operator==="&&")for(let t of e.operands){let r=this.detectContainsUUIDPattern(t);if(r)return r}return null}analyzeContainsArgs(e,t,r){let i=null;if(e.type==="function"||e.type==="functionCall"){let s=e;if((typeof s.function=="string"?s.function.toLowerCase():s.function?.value?.toLowerCase()??"")==="str"&&s.args.length===1){let c=s.args[0];c.type==="variable"&&(i=c.name)}}if(!i&&e.type==="variable"&&(i=e.name),!i)return null;if(t.type==="literal"){let c=String(t.value).match(JV);if(c)return{variable:i,uuid:c[0].toLowerCase(),originalExpression:r}}return null}async findSubjectsContainingUUID(e){if(!this.tripleStore)return[];if(this.tripleStore.findSubjectsByUUID)return(await this.tripleStore.findSubjectsByUUID(e)).map(s=>s.value);let t=await this.tripleStore.subjects(),r=[];for(let i of t)i instanceof YV.IRI&&i.value.toLowerCase().includes(e.toLowerCase())&&r.push(i.value);return r}injectSubjectConstraint(e,t,r){if(e.type==="bgp"){let i=e.triples.map(o=>o.subject.type==="variable"&&o.subject.value===t?{...o,subject:{type:"iri",value:r}}:o);if(i.some((o,c)=>o.subject!==e.triples[c].subject))return{type:"bgp",triples:i}}if(e.type==="join"){let i=this.injectSubjectConstraint(e.left,t,r),s=this.injectSubjectConstraint(e.right,t,r);if(i!==e.left||s!==e.right)return{type:"join",left:i,right:s}}if(e.type==="filter"){let i=this.injectSubjectConstraint(e.input,t,r);if(i!==e.input)return{...e,input:i}}return e}createValuesJoin(e,t,r){return{type:"join",left:{type:"values",variables:[t.variable],bindings:r.map(o=>({[t.variable]:{type:"iri",value:o}}))},right:this.optimizeSyncRecursive(e.input)}}analyzeQuery(e){let t=[];return this.analyzeRecursive(e,t),t}analyzeRecursive(e,t){if(e.type==="filter"){let r=this.detectContainsUUIDPattern(e.expression);r&&t.push({type:"uuid-index-lookup",originalPattern:`FILTER(CONTAINS(STR(?${r.variable}), "${r.uuid}"))`,suggestedRewrite:`Use --optimize flag or rewrite as VALUES ?${r.variable} { <uri-containing-uuid> }`,estimatedSpeedup:"O(n) \u2192 O(1) with UUID index lookup"}),this.analyzeRecursive(e.input,t);return}e.type==="join"?(this.analyzeRecursive(e.left,t),this.analyzeRecursive(e.right,t)):e.type==="leftjoin"?(this.analyzeRecursive(e.left,t),this.analyzeRecursive(e.right,t)):e.type==="union"?(this.analyzeRecursive(e.left,t),this.analyzeRecursive(e.right,t)):e.type==="minus"?(this.analyzeRecursive(e.left,t),this.analyzeRecursive(e.right,t)):e.type==="project"?this.analyzeRecursive(e.input,t):e.type==="orderby"?this.analyzeRecursive(e.input,t):e.type==="slice"?this.analyzeRecursive(e.input,t):e.type==="distinct"?this.analyzeRecursive(e.input,t):e.type==="reduced"?this.analyzeRecursive(e.input,t):e.type==="group"?this.analyzeRecursive(e.input,t):e.type==="extend"&&this.analyzeRecursive(e.input,t)}};Jm.FilterContainsOptimizer=yv});var l3=S(Zm=>{"use strict";Object.defineProperty(Zm,"__esModule",{value:!0});Zm.AlgebraOptimizer=void 0;var ZV=_v(),bv=class{static{a(this,"AlgebraOptimizer")}constructor(){this.stats=new Map,this.tripleStore=null,this.filterContainsOptimizer=new ZV.FilterContainsOptimizer}setTripleStore(e){this.tripleStore=e,this.filterContainsOptimizer.setTripleStore(e)}getOptimizationHints(){return this.filterContainsOptimizer.getLastOptimizationHints()}analyzeQuery(e){return this.filterContainsOptimizer.analyzeQuery(e)}optimize(e){let t=e;return t=this.eliminateEmptyBGPInFilterJoin(t),t=this.filterPushDown(t),t=this.joinReordering(t),t}async optimizeAsync(e){let t=e;return t=this.eliminateEmptyBGPInFilterJoin(t),this.tripleStore&&(t=await this.filterContainsOptimizer.optimize(t)),t=this.filterPushDown(t),t=this.joinReordering(t),t}optimizeWithSubjects(e,t){let r=e;return r=this.eliminateEmptyBGPInFilterJoin(r),r=this.filterContainsOptimizer.optimizeSync(r,t),r=this.filterPushDown(r),r=this.joinReordering(r),r}eliminateEmptyBGPInFilterJoin(e){if(e.type==="join"){if(e.left.type==="filter"){let t=e.left;if(t.input.type==="bgp"&&t.input.triples.length===0)return{type:"filter",expression:t.expression,input:this.eliminateEmptyBGPInFilterJoin(e.right)}}if(e.right.type==="filter"){let t=e.right;if(t.input.type==="bgp"&&t.input.triples.length===0)return{type:"filter",expression:t.expression,input:this.eliminateEmptyBGPInFilterJoin(e.left)}}return{type:"join",left:this.eliminateEmptyBGPInFilterJoin(e.left),right:this.eliminateEmptyBGPInFilterJoin(e.right)}}return e.type==="filter"?{...e,input:this.eliminateEmptyBGPInFilterJoin(e.input)}:e.type==="leftjoin"?{...e,left:this.eliminateEmptyBGPInFilterJoin(e.left),right:this.eliminateEmptyBGPInFilterJoin(e.right)}:e.type==="union"?{...e,left:this.eliminateEmptyBGPInFilterJoin(e.left),right:this.eliminateEmptyBGPInFilterJoin(e.right)}:e.type==="minus"?{...e,left:this.eliminateEmptyBGPInFilterJoin(e.left),right:this.eliminateEmptyBGPInFilterJoin(e.right)}:e.type==="project"?{...e,input:this.eliminateEmptyBGPInFilterJoin(e.input)}:e.type==="orderby"?{...e,input:this.eliminateEmptyBGPInFilterJoin(e.input)}:e.type==="slice"?{...e,input:this.eliminateEmptyBGPInFilterJoin(e.input)}:e.type==="distinct"?{...e,input:this.eliminateEmptyBGPInFilterJoin(e.input)}:e}filterPushDown(e){return e.type==="filter"?this.pushDownFilter(e):e.type==="join"?{type:"join",left:this.filterPushDown(e.left),right:this.filterPushDown(e.right)}:e.type==="leftjoin"?{...e,left:this.filterPushDown(e.left),right:this.filterPushDown(e.right)}:e.type==="union"?{type:"union",left:this.filterPushDown(e.left),right:this.filterPushDown(e.right)}:e.type==="minus"?{...e,left:this.filterPushDown(e.left),right:this.filterPushDown(e.right)}:e.type==="project"?{...e,input:this.filterPushDown(e.input)}:e.type==="orderby"?{...e,input:this.filterPushDown(e.input)}:e.type==="slice"?{...e,input:this.filterPushDown(e.input)}:e.type==="distinct"?{...e,input:this.filterPushDown(e.input)}:e}pushDownFilter(e){let t=e.input;if(t.type==="join"){let r=this.getFilterVariables(e.expression),i=this.getOperationVariables(t.left),s=this.getOperationVariables(t.right),o=r.every(l=>i.has(l)),c=r.every(l=>s.has(l));return o&&!c?{type:"join",left:{type:"filter",expression:e.expression,input:this.filterPushDown(t.left)},right:this.filterPushDown(t.right)}:c&&!o?{type:"join",left:this.filterPushDown(t.left),right:{type:"filter",expression:e.expression,input:this.filterPushDown(t.right)}}:{type:"filter",expression:e.expression,input:{type:"join",left:this.filterPushDown(t.left),right:this.filterPushDown(t.right)}}}return t.type==="union"?{type:"union",left:{type:"filter",expression:e.expression,input:this.filterPushDown(t.left)},right:{type:"filter",expression:e.expression,input:this.filterPushDown(t.right)}}:{type:"filter",expression:e.expression,input:this.filterPushDown(t)}}getFilterVariables(e){let t=[];if(e.type==="variable")t.push(e.name);else if(e.type==="comparison")t.push(...this.getFilterVariables(e.left)),t.push(...this.getFilterVariables(e.right));else if(e.type==="logical")for(let r of e.operands)t.push(...this.getFilterVariables(r));else if(e.type==="function")for(let r of e.args)t.push(...this.getFilterVariables(r));return Array.from(new Set(t))}getOperationVariables(e){let t=new Set;if(e.type==="bgp")for(let r of e.triples)r.subject.type==="variable"&&t.add(r.subject.value),r.predicate.type==="variable"&&t.add(r.predicate.value),r.object.type==="variable"&&t.add(r.object.value);else if(e.type==="join"){let r=this.getOperationVariables(e.left),i=this.getOperationVariables(e.right);return new Set([...r,...i])}else{if(e.type==="filter")return this.getOperationVariables(e.input);if(e.type==="leftjoin"){let r=this.getOperationVariables(e.left),i=this.getOperationVariables(e.right);return new Set([...r,...i])}else if(e.type==="union"){let r=this.getOperationVariables(e.left),i=this.getOperationVariables(e.right);return new Set([...r,...i])}else{if(e.type==="minus")return this.getOperationVariables(e.left);if(e.type==="project")return new Set(e.variables)}}return t}joinReordering(e){return e.type==="join"?this.reorderJoin(e):e.type==="filter"?{...e,input:this.joinReordering(e.input)}:e.type==="leftjoin"?{...e,left:this.joinReordering(e.left),right:this.joinReordering(e.right)}:e.type==="union"?{...e,left:this.joinReordering(e.left),right:this.joinReordering(e.right)}:e.type==="minus"?{...e,left:this.joinReordering(e.left),right:this.joinReordering(e.right)}:e.type==="project"?{...e,input:this.joinReordering(e.input)}:e.type==="orderby"?{...e,input:this.joinReordering(e.input)}:e.type==="slice"?{...e,input:this.joinReordering(e.input)}:e.type==="distinct"?{...e,input:this.joinReordering(e.input)}:e}reorderJoin(e){let t=this.isConstrained(e.left),r=this.isConstrained(e.right);if(r&&!t)return{type:"join",left:this.joinReordering(e.right),right:this.joinReordering(e.left)};if(t&&!r)return{type:"join",left:this.joinReordering(e.left),right:this.joinReordering(e.right)};let i=this.estimateCost(e.left);return this.estimateCost(e.right)<i?{type:"join",left:this.joinReordering(e.right),right:this.joinReordering(e.left)}:{type:"join",left:this.joinReordering(e.left),right:this.joinReordering(e.right)}}isConstrained(e){return e.type==="values"?!0:e.type==="bgp"?e.triples.some(t=>t.object.type!=="variable"||t.subject.type!=="variable"):e.type==="filter"?this.isConstrained(e.input):e.type==="join"?this.isConstrained(e.left)||this.isConstrained(e.right):e.type==="union"?this.isConstrained(e.left)&&this.isConstrained(e.right):!1}estimateCost(e){if(e.type==="bgp"){let t=0;for(let r of e.triples){let i=10;r.subject.type==="variable"&&(i*=10),r.predicate.type==="variable"&&(i*=20),r.object.type==="variable"&&(i*=5),t+=i}return t}if(e.type==="filter")return this.estimateCost(e.input)*.3;if(e.type==="join"){let t=this.estimateCost(e.left),r=this.estimateCost(e.right);return e.left.type==="values"||e.right.type==="values"?Math.min(t,r)*2:t*r}if(e.type==="leftjoin")return this.estimateCost(e.left)+this.estimateCost(e.right)*.5;if(e.type==="union")return this.estimateCost(e.left)+this.estimateCost(e.right);if(e.type==="values"){let t=e.bindings;return Array.isArray(t)?t.length*5:10}return e.type==="minus"?this.estimateCost(e.left)+this.estimateCost(e.right)*.3:100}setStatistics(e,t){this.stats.set(e,t)}getStatistics(e){return this.stats.get(e)}};Zm.AlgebraOptimizer=bv});var u3=S(eg=>{"use strict";Object.defineProperty(eg,"__esModule",{value:!0});eg.AlgebraSerializer=void 0;var Sv=class{static{a(this,"AlgebraSerializer")}toString(e,t=0){let r="  ".repeat(t);switch(e.type){case"bgp":return`${r}BGP [
 ${e.triples.map(u=>`${r}  ${this.tripleToString(u)}`).join(`
 `)}
 ${r}]`;case"filter":return`${r}Filter(
@@ -828,7 +828,7 @@ Next steps:
 `),process.stdout.write(`  File:   ${e.file}
 `),process.stdout.write(`  Commit: ${e.sha}
 `),process.stdout.write(`  URL:    ${e.url}
-`)),process.exit(0)}catch(e){let t=e instanceof Error?e:new Error(String(e)),r=new Mu;t.message=r.redact(t.message),t.stack&&(t.stack=r.redact(t.stack)),re.handle(t)}})}a(Tne,"restPushCommand");function j4(n){let e=new oe;return e.name("exocortex").description("CLI tool for Exocortex knowledge management system").version(n??"16.80.1"),e.addCommand(i4()),e.addCommand(p4()),e.addCommand(LN()),e.addCommand(MN()),e.addCommand(dk()),e.addCommand(BN()),e.addCommand(VN()),e.addCommand(HN()),e.addCommand(mk()),e.addCommand(vk()),e.addCommand(Ak()),e.addCommand(Ik()),e.addCommand(Rk()),e.addCommand($k()),e.addCommand(Uk()),e.addCommand(Hk()),e.addCommand(n4()),e.addCommand(v4()),e.addCommand(C4()),e.addCommand(P4()),e.addCommand(F4()),e.addCommand(M4()),e}a(j4,"createProgram");j4().parse();0&&(module.exports={createProgram});
+`)),process.exit(0)}catch(e){let t=e instanceof Error?e:new Error(String(e)),r=new Mu;t.message=r.redact(t.message),t.stack&&(t.stack=r.redact(t.stack)),re.handle(t)}})}a(Tne,"restPushCommand");function j4(n){let e=new oe;return e.name("exocortex").description("CLI tool for Exocortex knowledge management system").version(n??"16.80.3"),e.addCommand(i4()),e.addCommand(p4()),e.addCommand(LN()),e.addCommand(MN()),e.addCommand(dk()),e.addCommand(BN()),e.addCommand(VN()),e.addCommand(HN()),e.addCommand(mk()),e.addCommand(vk()),e.addCommand(Ak()),e.addCommand(Ik()),e.addCommand(Rk()),e.addCommand($k()),e.addCommand(Uk()),e.addCommand(Hk()),e.addCommand(n4()),e.addCommand(v4()),e.addCommand(C4()),e.addCommand(P4()),e.addCommand(F4()),e.addCommand(M4()),e}a(j4,"createProgram");j4().parse();0&&(module.exports={createProgram});
 /*! Bundled license information:
 
 reflect-metadata/Reflect.js:

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@kitelev/exocortex-cli",
-  "version": "16.80.1",
+  "version": "16.80.3",
   "description": "CLI tool for Exocortex knowledge management system - SPARQL queries, task management, and more",
   "main": "dist/index.js",
   "bin": {